Running as unit: rb-build-amd64_22-29954.service ==================================================================================== Wed Jan 8 06:32:24 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_22) on jenkins, called using "ionos5-amd64 ionos11-amd64" as arguments. Wed Jan 8 06:32:24 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-QwAWp1z9" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 8 06:32:24 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Wed Jan 8 06:32:24 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-P7l6mw' Wed Jan 8 06:32:24 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Wed Jan 8 06:32:24 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-0Klljx' ok, let's check if obitools is building anywhere yet… ok, obitools is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of obitools in trixie on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Wed Jan 8 06:32:35 UTC 2025 I: starting to build obitools/trixie/amd64 on jenkins on '2025-01-08 06:32' Wed Jan 8 06:32:35 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_22/29954/console.log 1736317955 amd64 trixie obitools Wed Jan 8 06:32:35 UTC 2025 I: Downloading source for trixie/obitools=3.0.1~b26+dfsg-3 --2025-01-08 06:32:35-- http://deb.debian.org/debian/pool/main/o/obitools/obitools_3.0.1%7eb26%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2210 (2.2K) [text/prs.lines.tag] Saving to: ‘obitools_3.0.1~b26+dfsg-3.dsc’ 0K .. 100% 329M=0s 2025-01-08 06:32:35 (329 MB/s) - ‘obitools_3.0.1~b26+dfsg-3.dsc’ saved [2210/2210] --2025-01-08 06:32:35-- http://deb.debian.org/debian/pool/main/o/obitools/obitools_3.0.1%7eb26%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2210 (2.2K) [text/prs.lines.tag] Saving to: ‘obitools_3.0.1~b26+dfsg-3.dsc’ 0K .. 100% 329M=0s 2025-01-08 06:32:35 (329 MB/s) - ‘obitools_3.0.1~b26+dfsg-3.dsc’ saved [2210/2210] Wed Jan 8 06:32:35 UTC 2025 I: obitools_3.0.1~b26+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: obitools Binary: obitools Architecture: any Version: 3.0.1~b26+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: https://metabarcoding.org/obitools3 Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/obitools Vcs-Git: https://salsa.debian.org/med-team/obitools.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: less Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake Package-List: obitools deb science optional arch=any Checksums-Sha1: 79040b3e48957ae1669e2b094fb3fc56a8d0db7b 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz 880f7d3e5ed3a90e154997172fe470728ad2057d 3556832 obitools_3.0.1~b26+dfsg-3.debian.tar.xz Checksums-Sha256: 6f067e22b76e4489288f7a3d13027391ecba5719de324c2ca58ec4542bc60e91 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz 0b79fc02688c6b6bc60ac9d8e5415f91fdf750ae4b1c5a0b6fd2b00bb5218ca5 3556832 obitools_3.0.1~b26+dfsg-3.debian.tar.xz Files: 974e65eaa6d1a2f51a7f5594b6987349 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz 3036039d013d939b2e214e8912c188c1 3556832 obitools_3.0.1~b26+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmc/VXASHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+bi42EP/2QKQ98tQuiecGBFQt9elCmKAEVThZ5D yJ7sWoKMg+5zozDEJdYwt9P7rrht1ziSBD/rX+s9ukDuk2PulRfHD0k/x2PvRzA5 IHe6J/34yGwiEzxK2vBdnWNzCVQpeGS3Cs83/UAK0pnkIr6l17/k4TS04CjHYKfB XXWW05LV2UFH13EqZuRWN4mKgOhLYhUOSoBdLDqBDuV+0KnTL4eWbVxGUAY/Y7pd XfJ02xy8Dz3oJMnmU4tYH3M0Lf6GX9EYxrQcQCNc1twE6T5vOZ2/WLuMh78J67V7 S07nBIFf2LZ34DQLLxnhPARElzro/3XTphqNwra/1SqZ3ROeTh6IuigofJUEyE6d R7wwjV5/j1QvAXPlu2tAuZ8vRPpj7Y+3o5Uz4HTe5G4ixzYtVFQ57mYdxO2v+OEu v4MvX1RusNab/+WRhiUMd9lFBEkZeK1mzNcteizsQDUAbvYuQ8dovPzHrSeozinB fxx8EeU2jlkjGblsrED9qd7ypMity65hiWFjT0zmIymGNVKmg5u8eUFyrGrw82cX lmGBwKzHgUX44lCOEV7Dv1bR3pfYnAe/QAEE6NVJiJ6QoSMNsQPq86i8+ke+qNYl hd38rYvPOBBEEly0RVqRaa2RecnCw5qFvgK9weNH82zusheUgqRwoLCxeAcVPoyS zrfSmG4kgCSV =vPIl -----END PGP SIGNATURE----- Wed Jan 8 06:32:35 UTC 2025 I: Checking whether the package is not for us Wed Jan 8 06:32:35 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Wed Jan 8 06:32:35 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Wed Jan 8 06:32:35 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Wed Jan 8 06:32:35 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-LAGCrn' ==================================================================================== Tue Feb 10 12:55:36 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 obitools trixie /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV 3.0.1~b26+dfsg-3" as arguments. Tue Feb 10 12:55:36 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-lcztnUHc" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Feb 10 12:55:36 UTC 2026 I: Downloading source for trixie/obitools=3.0.1~b26+dfsg-3 Reading package lists... NOTICE: 'obitools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/obitools.git Please use: git clone https://salsa.debian.org/med-team/obitools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3814 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (dsc) [2210 B] Get:2 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (tar) [255 kB] Get:3 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (diff) [3557 kB] Fetched 3814 kB in 0s (23.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'obitools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/obitools.git Please use: git clone https://salsa.debian.org/med-team/obitools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3814 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (dsc) [2210 B] Get:2 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (tar) [255 kB] Get:3 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (diff) [3557 kB] Fetched 3814 kB in 0s (23.7 MB/s) Download complete and in download only mode ============================================================================= Building obitools in trixie on amd64 on ionos5-amd64 now. Date: Tue Feb 10 12:55:37 UTC 2026 Date UTC: Tue Feb 10 12:55:37 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 10 00:55:37 -12 2026 I: pbuilder-time-stamp: 1770728137 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_3.0.1~b26+dfsg-3.dsc] I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz] I: copying [./obitools_3.0.1~b26+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 21 15:44:48 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: issuer "crusoe@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_debian_options dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying any_arch dpkg-source: info: applying no-rpath dpkg-source: info: applying python3.12 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3307650/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='575ea4ef94834473bb2bfa5ab5719fd3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3307650' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/pbuilderrc_9sMq --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3307650/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19975 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-dev:native. pbuilder-satisfydepends-dummy depends on libpython3-dev; however: Package libpython3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 57.9 MB of archives. After unpacking 232 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-13 [91.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-3 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.2-1 [2267 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.2-1 [11.9 MB] Get: 57 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-1+b1 [3157 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.23 [919 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 76 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241217 [113 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-3 [30.4 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.8-3 [2154 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.8-3 [5134 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.8-1 [10.1 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.8-3 [505 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.8-1 [26.1 kB] Fetched 57.9 MB in 1s (110 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19975 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... 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Preparing to unpack .../00-python3-minimal_3.12.8-1_amd64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21358 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.8-1_amd64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libproc2-0:amd64. 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Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../21-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../22-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../23-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../24-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../25-libldap-2.5-0_2.5.19+dfsg-1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.19+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../26-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../27-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../28-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../29-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../30-libcurl4t64_8.11.1-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.11.1-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../31-libjsoncpp26_1.9.6-3_amd64.deb ... 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Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libjs-sphinxdoc (8.1.3-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libcurl4t64:amd64 (8.11.1-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up cmake (3.31.2-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.23) ... Setting up libpython3.12t64:amd64 (3.12.8-3) ... Setting up libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up libpython3.12-dev:amd64 (3.12.8-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-3_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' # skip it make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling python/obitools3/utils.pyx because it changed. Compiling python/obitools3/dms/dms.pyx because it changed. 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Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [ 1%] Building C object CMakeFiles/cobitools3.dir/obisig.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obisig.c.o -MF CMakeFiles/cobitools3.dir/obisig.c.o.d -o CMakeFiles/cobitools3.dir/obisig.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obisig.c" [ 3%] Building C object CMakeFiles/cobitools3.dir/obierrno.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obierrno.c.o -MF CMakeFiles/cobitools3.dir/obierrno.c.o.d -o CMakeFiles/cobitools3.dir/obierrno.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obierrno.c" [ 5%] Building C object CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -MF CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o.d -o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms_taxonomy.c" [ 7%] Building C object CMakeFiles/cobitools3.dir/obiblob_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -MF CMakeFiles/cobitools3.dir/obiblob_indexer.c.o.d -o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob_indexer.c" [ 9%] Building C object CMakeFiles/cobitools3.dir/obi_lcs.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_lcs.c.o -MF CMakeFiles/cobitools3.dir/obi_lcs.c.o.d -o CMakeFiles/cobitools3.dir/obi_lcs.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_lcs.c" [ 11%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_str.c" [ 13%] Building C object CMakeFiles/cobitools3.dir/bloom.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/bloom.c.o -MF CMakeFiles/cobitools3.dir/bloom.c.o.d -o CMakeFiles/cobitools3.dir/bloom.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/bloom.c" [ 15%] Building C object CMakeFiles/cobitools3.dir/build_reference_db.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/build_reference_db.c.o -MF CMakeFiles/cobitools3.dir/build_reference_db.c.o.d -o CMakeFiles/cobitools3.dir/build_reference_db.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/build_reference_db.c" [ 17%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_array.c" [ 19%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_idx.c" [ 21%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_bool.c" [ 23%] Building C object CMakeFiles/cobitools3.dir/libjson/json_utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -MF CMakeFiles/cobitools3.dir/libjson/json_utils.c.o.d -o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/json_utils.c" [ 25%] Building C object CMakeFiles/cobitools3.dir/libjson/cJSON.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -MF CMakeFiles/cobitools3.dir/libjson/cJSON.c.o.d -o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/cJSON.c" [ 26%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_blob.c" [ 28%] Building C object CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -MF CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o.d -o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/dna_seq_indexer.c" [ 30%] Building C object CMakeFiles/cobitools3.dir/obi_ecotag.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecotag.c.o -MF CMakeFiles/cobitools3.dir/obi_ecotag.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecotag.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecotag.c" [ 32%] Building C object CMakeFiles/cobitools3.dir/encode.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/encode.c.o -MF CMakeFiles/cobitools3.dir/encode.c.o.d -o CMakeFiles/cobitools3.dir/encode.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/encode.c" [ 34%] Building C object CMakeFiles/cobitools3.dir/obiavl.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiavl.c.o -MF CMakeFiles/cobitools3.dir/obiavl.c.o.d -o CMakeFiles/cobitools3.dir/obiavl.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiavl.c" [ 36%] Building C object CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -MF CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o.d -o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/sse_banded_LCS_alignment.c" [ 38%] Building C object CMakeFiles/cobitools3.dir/kmer_similarity.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/kmer_similarity.c.o -MF CMakeFiles/cobitools3.dir/kmer_similarity.c.o.d -o CMakeFiles/cobitools3.dir/kmer_similarity.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/kmer_similarity.c" [ 40%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_qual.c" [ 42%] Building C object CMakeFiles/cobitools3.dir/obi_clean.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_clean.c.o -MF CMakeFiles/cobitools3.dir/obi_clean.c.o.d -o CMakeFiles/cobitools3.dir/obi_clean.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_clean.c" [ 44%] Building C object CMakeFiles/cobitools3.dir/utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/utils.c.o -MF CMakeFiles/cobitools3.dir/utils.c.o.d -o CMakeFiles/cobitools3.dir/utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/utils.c" [ 46%] Building C object CMakeFiles/cobitools3.dir/uint8_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/uint8_indexer.c.o -MF CMakeFiles/cobitools3.dir/uint8_indexer.c.o.d -o CMakeFiles/cobitools3.dir/uint8_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/uint8_indexer.c" [ 48%] Building C object CMakeFiles/cobitools3.dir/murmurhash2.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" 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CMakeFiles/cobitools3.dir/obiview.c.o -MF CMakeFiles/cobitools3.dir/obiview.c.o.d -o CMakeFiles/cobitools3.dir/obiview.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiview.c" [ 53%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_int.c" [ 55%] Building C object CMakeFiles/cobitools3.dir/linked_list.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/linked_list.c.o -MF 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"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/hashtable.c" [ 61%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn.c" [ 63%] Building C object CMakeFiles/cobitools3.dir/char_str_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/char_str_indexer.c.o -MF CMakeFiles/cobitools3.dir/char_str_indexer.c.o.d -o CMakeFiles/cobitools3.dir/char_str_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/char_str_indexer.c" [ 65%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_float.c" [ 67%] Building C object CMakeFiles/cobitools3.dir/upperband.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/upperband.c.o -MF CMakeFiles/cobitools3.dir/upperband.c.o.d -o CMakeFiles/cobitools3.dir/upperband.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/upperband.c" [ 69%] Building C object CMakeFiles/cobitools3.dir/crc64.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/crc64.c.o -MF CMakeFiles/cobitools3.dir/crc64.c.o.d -o CMakeFiles/cobitools3.dir/crc64.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/crc64.c" [ 71%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_seq.c" [ 73%] Building C object CMakeFiles/cobitools3.dir/obilittlebigman.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obilittlebigman.c.o -MF CMakeFiles/cobitools3.dir/obilittlebigman.c.o.d -o CMakeFiles/cobitools3.dir/obilittlebigman.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obilittlebigman.c" [ 75%] Building C object CMakeFiles/cobitools3.dir/obidmscolumndir.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumndir.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumndir.c" [ 76%] Building C object CMakeFiles/cobitools3.dir/obidms.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms.c.o -MF CMakeFiles/cobitools3.dir/obidms.c.o.d -o CMakeFiles/cobitools3.dir/obidms.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms.c" [ 78%] Building C object CMakeFiles/cobitools3.dir/obi_ecopcr.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -MF CMakeFiles/cobitools3.dir/obi_ecopcr.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecopcr.c" [ 80%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -MF 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CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/libstki.c" [ 86%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_search.c" [ 88%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I 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"src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obitypes.c.o -MF CMakeFiles/cobitools3.dir/obitypes.c.o.d -o CMakeFiles/cobitools3.dir/obitypes.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obitypes.c" [ 98%] Building C object CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/array_indexer.c.o -MF CMakeFiles/cobitools3.dir/array_indexer.c.o.d -o CMakeFiles/cobitools3.dir/array_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/array_indexer.c" [100%] Linking C shared library libcobitools3.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cobitools3.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cobitools3.dir/link.d -Wl,-z,relro -shared 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CMakeFiles/cobitools3.dir/obi_clean.c.o CMakeFiles/cobitools3.dir/utils.c.o CMakeFiles/cobitools3.dir/uint8_indexer.c.o CMakeFiles/cobitools3.dir/murmurhash2.c.o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o CMakeFiles/cobitools3.dir/obiview.c.o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o CMakeFiles/cobitools3.dir/linked_list.c.o CMakeFiles/cobitools3.dir/obiblob.c.o CMakeFiles/cobitools3.dir/hashtable.c.o CMakeFiles/cobitools3.dir/obidmscolumn.c.o CMakeFiles/cobitools3.dir/char_str_indexer.c.o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o CMakeFiles/cobitools3.dir/upperband.c.o CMakeFiles/cobitools3.dir/crc64.c.o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o CMakeFiles/cobitools3.dir/obilittlebigman.c.o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o CMakeFiles/cobitools3.dir/obidms.c.o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o CMakeFiles/cobitools3.dir/obitypes.c.o CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers running build_ext building 'obitools3.utils' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/utils.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.dms' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.obiseq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.object' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.taxo.taxo' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.view.view' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.column' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.column_idx' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.char' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.qual' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.bool' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.str' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.float' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.seq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.int' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.temp' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/temp.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.command' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/command.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/command.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.arguments' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.config' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/config.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.logging' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/logging.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/logging.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.progress' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/progress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so building 'obitools3.files.universalopener' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/files x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so building 'obitools3.files.linebuffer' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so building 'obitools3.files.uncompress' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so building 'obitools3.uri.decode' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.fasta' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.tab' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._rassemble' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._dynamic' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._qsassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._freeendgap' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._solexapairend' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._freeendgapfm' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._qsrassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign.apat_pattern' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._nws' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._assemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign.shifted_ali' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.fasta' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/format x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.tab' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.header' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.annotate' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ecotag' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.build_ref_db' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.clean' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.head' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/head.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.test' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/test.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.rm' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.history' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/history.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ngsfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.addtaxids' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.less' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/less.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.grep' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ls' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ls.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.taxonomy' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.align' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/align.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.uniq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.import' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/import.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.cat' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/cat.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.stats' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ecopcr' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.sort' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/sort.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.export' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.count' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/count.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.clean_dms' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.tail' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/tail.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.split' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/split.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.alignpairedend' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.embl' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.fasta' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.ngsfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.genbank' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.tab' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.embl_genbank_features' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.header' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.universal' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/obi -> build/scripts-3.12 changing mode of build/scripts-3.12/obi from 644 to 755 dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' Traceback (most recent call last): File "/usr/bin/pybuild", line 604, in main(cfg) File "/usr/bin/pybuild", line 375, in main iversions = build_sorted(versions, impl=ipreter.impl) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 450, in build_sorted default_ver = default(impl) ^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 381, in default raise ValueError("interpreter implementation not supported: %r" % impl) ValueError: interpreter implementation not supported: '' PYTHONPATH= \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root '/build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (0.0s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[4]: Nothing to be done for 'CMakeFiles/cobitools3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info writing python/OBITools3.egg-info/PKG-INFO writing dependency_links to python/OBITools3.egg-info/dependency_links.txt writing top-level names to python/OBITools3.egg-info/top_level.txt writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'python' warning: no files found matching '*.h' under directory 'python' warning: no files found matching '*.txt' under directory 'doc/sphinx/source' warning: no files found matching '*.rst' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext' warning: no files found matching 'doc/sphinx/Makefile' warning: no files found matching 'doc/sphinx/Doxyfile' adding license file 'LICENSE' writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' Copying python/OBITools3.egg-info to /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/OBITools3-3.0.1b26.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obi -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin/obi to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: symbol log10 used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-3_amd64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3307650 and its subdirectories I: Current time: Tue Feb 10 01:06:56 -12 2026 I: pbuilder-time-stamp: 1770728816 Tue Feb 10 13:06:56 UTC 2026 I: Signing ./b1/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo as obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc Tue Feb 10 13:06:56 UTC 2026 I: Signed ./b1/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo as ./b1/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc Tue Feb 10 13:06:56 UTC 2026 - build #1 for obitools/trixie/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Tue Feb 10 13:06:56 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-lcztnUHc, removing. /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 8 06:43 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 8 06:32 b2 -rw-r--r-- 1 jenkins jenkins 2210 Nov 21 15:46 obitools_3.0.1~b26+dfsg-3.dsc -rw------- 1 jenkins jenkins 3362 Jan 8 06:32 rbuildlog.EghY38N /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b1: total 26160 -rw-r--r-- 1 jenkins jenkins 203834 Jan 8 06:43 build.log -rw-r--r-- 1 jenkins jenkins 17186704 Jan 8 06:43 obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 3556832 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2210 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3.dsc -rw-r--r-- 1 jenkins jenkins 7323 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8205 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1808 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 5800384 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1652 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b2: total 0 Wed Jan 8 06:43:57 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 10 00:55:37 -12 2026 I: pbuilder-time-stamp: 1770728137 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_3.0.1~b26+dfsg-3.dsc] I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz] I: copying [./obitools_3.0.1~b26+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 21 15:44:48 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: issuer "crusoe@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_debian_options dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying any_arch dpkg-source: info: applying no-rpath dpkg-source: info: applying python3.12 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3307650/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='575ea4ef94834473bb2bfa5ab5719fd3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3307650' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/pbuilderrc_9sMq --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3307650/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19975 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-dev:native. pbuilder-satisfydepends-dummy depends on libpython3-dev; however: Package libpython3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 57.9 MB of archives. After unpacking 232 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-13 [91.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-3 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.2-1 [2267 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.2-1 [11.9 MB] Get: 57 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-1+b1 [3157 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.23 [919 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 76 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241217 [113 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-3 [30.4 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.8-3 [2154 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.8-3 [5134 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.8-1 [10.1 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.8-3 [505 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.8-1 [26.1 kB] Fetched 57.9 MB in 1s (110 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19975 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_amd64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:amd64 (3.12.8-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20295 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_amd64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21358 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.8-1_amd64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libproc2-0:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-3_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' # skip it make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling python/obitools3/utils.pyx because it changed. Compiling python/obitools3/dms/dms.pyx because it changed. 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"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [ 1%] Building C object CMakeFiles/cobitools3.dir/obisig.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obisig.c.o -MF CMakeFiles/cobitools3.dir/obisig.c.o.d -o CMakeFiles/cobitools3.dir/obisig.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obisig.c" [ 3%] Building C object CMakeFiles/cobitools3.dir/obierrno.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obierrno.c.o -MF CMakeFiles/cobitools3.dir/obierrno.c.o.d -o CMakeFiles/cobitools3.dir/obierrno.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obierrno.c" [ 5%] Building C object CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -MF CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o.d -o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms_taxonomy.c" [ 7%] Building C object CMakeFiles/cobitools3.dir/obiblob_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I 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CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_qual.c" [ 42%] Building C object CMakeFiles/cobitools3.dir/obi_clean.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_clean.c.o -MF CMakeFiles/cobitools3.dir/obi_clean.c.o.d -o CMakeFiles/cobitools3.dir/obi_clean.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_clean.c" [ 44%] Building C object CMakeFiles/cobitools3.dir/utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/utils.c.o -MF CMakeFiles/cobitools3.dir/utils.c.o.d -o CMakeFiles/cobitools3.dir/utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/utils.c" [ 46%] Building C object CMakeFiles/cobitools3.dir/uint8_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/uint8_indexer.c.o -MF CMakeFiles/cobitools3.dir/uint8_indexer.c.o.d -o CMakeFiles/cobitools3.dir/uint8_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/uint8_indexer.c" [ 48%] Building C object CMakeFiles/cobitools3.dir/murmurhash2.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/murmurhash2.c.o -MF CMakeFiles/cobitools3.dir/murmurhash2.c.o.d -o CMakeFiles/cobitools3.dir/murmurhash2.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/murmurhash2.c" [ 50%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_char.c" [ 51%] Building C object CMakeFiles/cobitools3.dir/obiview.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiview.c.o -MF CMakeFiles/cobitools3.dir/obiview.c.o.d -o CMakeFiles/cobitools3.dir/obiview.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiview.c" [ 53%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_int.c" [ 55%] Building C object CMakeFiles/cobitools3.dir/linked_list.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/linked_list.c.o -MF CMakeFiles/cobitools3.dir/linked_list.c.o.d -o CMakeFiles/cobitools3.dir/linked_list.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/linked_list.c" [ 57%] Building C object CMakeFiles/cobitools3.dir/obiblob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob.c.o -MF CMakeFiles/cobitools3.dir/obiblob.c.o.d -o CMakeFiles/cobitools3.dir/obiblob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob.c" [ 59%] Building C object CMakeFiles/cobitools3.dir/hashtable.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/hashtable.c.o -MF CMakeFiles/cobitools3.dir/hashtable.c.o.d -o CMakeFiles/cobitools3.dir/hashtable.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/hashtable.c" [ 61%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn.c" [ 63%] Building C object CMakeFiles/cobitools3.dir/char_str_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/char_str_indexer.c.o -MF CMakeFiles/cobitools3.dir/char_str_indexer.c.o.d -o CMakeFiles/cobitools3.dir/char_str_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/char_str_indexer.c" [ 65%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_float.c" [ 67%] Building C object CMakeFiles/cobitools3.dir/upperband.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/upperband.c.o -MF CMakeFiles/cobitools3.dir/upperband.c.o.d -o CMakeFiles/cobitools3.dir/upperband.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/upperband.c" [ 69%] Building C object CMakeFiles/cobitools3.dir/crc64.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/crc64.c.o -MF CMakeFiles/cobitools3.dir/crc64.c.o.d -o CMakeFiles/cobitools3.dir/crc64.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/crc64.c" [ 71%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_seq.c" [ 73%] Building C object CMakeFiles/cobitools3.dir/obilittlebigman.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obilittlebigman.c.o -MF CMakeFiles/cobitools3.dir/obilittlebigman.c.o.d -o CMakeFiles/cobitools3.dir/obilittlebigman.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obilittlebigman.c" [ 75%] Building C object CMakeFiles/cobitools3.dir/obidmscolumndir.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumndir.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumndir.c" [ 76%] Building C object CMakeFiles/cobitools3.dir/obidms.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms.c.o -MF CMakeFiles/cobitools3.dir/obidms.c.o.d -o CMakeFiles/cobitools3.dir/obidms.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms.c" [ 78%] Building C object CMakeFiles/cobitools3.dir/obi_ecopcr.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -MF CMakeFiles/cobitools3.dir/obi_ecopcr.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecopcr.c" [ 80%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libthermo/nnparams.c" [ 82%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoapat.c" [ 84%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/libstki.c" [ 86%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_search.c" [ 88%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_parse.c" [ 90%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecodna.c" [ 92%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoMalloc.c" [ 94%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoError.c" [ 96%] Building C object CMakeFiles/cobitools3.dir/obitypes.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obitypes.c.o -MF CMakeFiles/cobitools3.dir/obitypes.c.o.d -o CMakeFiles/cobitools3.dir/obitypes.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obitypes.c" [ 98%] Building C object CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/array_indexer.c.o -MF CMakeFiles/cobitools3.dir/array_indexer.c.o.d -o CMakeFiles/cobitools3.dir/array_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/array_indexer.c" [100%] Linking C shared library libcobitools3.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cobitools3.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cobitools3.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libcobitools3.so -o libcobitools3.so CMakeFiles/cobitools3.dir/obisig.c.o CMakeFiles/cobitools3.dir/obierrno.c.o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o CMakeFiles/cobitools3.dir/obi_lcs.c.o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o CMakeFiles/cobitools3.dir/bloom.c.o CMakeFiles/cobitools3.dir/build_reference_db.c.o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o CMakeFiles/cobitools3.dir/obi_ecotag.c.o CMakeFiles/cobitools3.dir/encode.c.o CMakeFiles/cobitools3.dir/obiavl.c.o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o CMakeFiles/cobitools3.dir/kmer_similarity.c.o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o CMakeFiles/cobitools3.dir/obi_clean.c.o CMakeFiles/cobitools3.dir/utils.c.o CMakeFiles/cobitools3.dir/uint8_indexer.c.o CMakeFiles/cobitools3.dir/murmurhash2.c.o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o CMakeFiles/cobitools3.dir/obiview.c.o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o CMakeFiles/cobitools3.dir/linked_list.c.o CMakeFiles/cobitools3.dir/obiblob.c.o CMakeFiles/cobitools3.dir/hashtable.c.o CMakeFiles/cobitools3.dir/obidmscolumn.c.o CMakeFiles/cobitools3.dir/char_str_indexer.c.o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o CMakeFiles/cobitools3.dir/upperband.c.o CMakeFiles/cobitools3.dir/crc64.c.o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o CMakeFiles/cobitools3.dir/obilittlebigman.c.o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o CMakeFiles/cobitools3.dir/obidms.c.o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o CMakeFiles/cobitools3.dir/obitypes.c.o CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers running build_ext building 'obitools3.utils' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/utils.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.dms' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.obiseq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.object' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.taxo.taxo' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.view.view' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.column' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.column_idx' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.char' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.qual' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.bool' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.str' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.float' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.seq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.int' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.temp' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/temp.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.command' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/command.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/command.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.arguments' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.config' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/config.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.logging' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/logging.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/logging.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.progress' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/progress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so building 'obitools3.files.universalopener' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/files x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so building 'obitools3.files.linebuffer' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so building 'obitools3.files.uncompress' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so building 'obitools3.uri.decode' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.fasta' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.tab' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._rassemble' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._dynamic' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._qsassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._freeendgap' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._solexapairend' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._freeendgapfm' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._qsrassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign.apat_pattern' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._nws' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._assemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign.shifted_ali' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.fasta' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/format x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.tab' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.header' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.annotate' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ecotag' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.build_ref_db' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.clean' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.head' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/head.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.test' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/test.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.rm' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.history' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/history.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ngsfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.addtaxids' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.less' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/less.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.grep' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ls' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ls.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.taxonomy' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.align' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/align.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.uniq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.import' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/import.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.cat' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/cat.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.stats' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ecopcr' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.sort' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/sort.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.export' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.count' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/count.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.clean_dms' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.tail' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/tail.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.split' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/split.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.alignpairedend' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.embl' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.fasta' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.ngsfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.genbank' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.tab' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.embl_genbank_features' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.header' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.universal' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/obi -> build/scripts-3.12 changing mode of build/scripts-3.12/obi from 644 to 755 dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' Traceback (most recent call last): File "/usr/bin/pybuild", line 604, in main(cfg) File "/usr/bin/pybuild", line 375, in main iversions = build_sorted(versions, impl=ipreter.impl) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 450, in build_sorted default_ver = default(impl) ^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 381, in default raise ValueError("interpreter implementation not supported: %r" % impl) ValueError: interpreter implementation not supported: '' PYTHONPATH= \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root '/build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (0.0s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[4]: Nothing to be done for 'CMakeFiles/cobitools3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info writing python/OBITools3.egg-info/PKG-INFO writing dependency_links to python/OBITools3.egg-info/dependency_links.txt writing top-level names to python/OBITools3.egg-info/top_level.txt writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'python' warning: no files found matching '*.h' under directory 'python' warning: no files found matching '*.txt' under directory 'doc/sphinx/source' warning: no files found matching '*.rst' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext' warning: no files found matching 'doc/sphinx/Makefile' warning: no files found matching 'doc/sphinx/Doxyfile' adding license file 'LICENSE' writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' Copying python/OBITools3.egg-info to /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/OBITools3-3.0.1b26.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obi -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin/obi to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: symbol log10 used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-3_amd64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3307650 and its subdirectories I: Current time: Tue Feb 10 01:06:56 -12 2026 I: pbuilder-time-stamp: 1770728816 Wed Jan 8 06:43:57 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Wed Jan 8 06:43:57 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Wed Jan 8 06:43:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Wed Jan 8 06:43:57 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-MdF0U6' ==================================================================================== Wed Jan 8 06:43:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 obitools trixie /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV 3.0.1~b26+dfsg-3" as arguments. Wed Jan 8 06:43:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-EQBFB9ot" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 8 06:43:59 UTC 2025 I: Downloading source for trixie/obitools=3.0.1~b26+dfsg-3 Reading package lists... NOTICE: 'obitools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/obitools.git Please use: git clone https://salsa.debian.org/med-team/obitools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3814 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (dsc) [2210 B] Get:2 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (tar) [255 kB] Get:3 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (diff) [3557 kB] Fetched 3814 kB in 0s (22.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'obitools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/obitools.git Please use: git clone https://salsa.debian.org/med-team/obitools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3814 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (dsc) [2210 B] Get:2 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (tar) [255 kB] Get:3 http://deb.debian.org/debian trixie/main obitools 3.0.1~b26+dfsg-3 (diff) [3557 kB] Fetched 3814 kB in 0s (22.3 MB/s) Download complete and in download only mode ============================================================================= Re-Building obitools in trixie on amd64 on ionos11-amd64 now. Date: Wed Jan 8 06:44:00 UTC 2025 Date UTC: Wed Jan 8 06:44:00 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/pbuilderrc_N1SZ + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' obitools = debian-installer -o obitools = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' obitools = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/pbuilderrc_N1SZ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b2 --logfile b2/build.log obitools_3.0.1~b26+dfsg-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 8 20:44:00 +14 2025 I: pbuilder-time-stamp: 1736318640 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_3.0.1~b26+dfsg-3.dsc] I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz] I: copying [./obitools_3.0.1~b26+dfsg-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-3.dsc: unsupported subcommand dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_debian_options dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying any_arch dpkg-source: info: applying no-rpath dpkg-source: info: applying python3.12 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 8 06:44 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=22334d54d18e48a8aaaf8228a35b55a3 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1591455 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/pbuilderrc_N1SZ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b2 --logfile b2/build.log obitools_3.0.1~b26+dfsg-3.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19853 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-dev:native. pbuilder-satisfydepends-dummy depends on libpython3-dev; however: Package libpython3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 60.5 MB of archives. After unpacking 241 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-13 [91.9 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-3 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.2-1 [2267 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.2-1 [11.9 MB] Get: 63 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-1+b1 [3157 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 70 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.23 [919 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241217 [113 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-3 [30.4 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.8-3 [2154 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.8-3 [5134 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.8-1 [10.1 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.8-3 [505 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.8-1 [26.1 kB] Fetched 60.5 MB in 8s (7377 kB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-3_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' # skip it make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling python/obitools3/utils.pyx because it changed. 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Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (4.4s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [ 1%] Building C object CMakeFiles/cobitools3.dir/obisig.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obisig.c.o -MF CMakeFiles/cobitools3.dir/obisig.c.o.d -o CMakeFiles/cobitools3.dir/obisig.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obisig.c" [ 3%] Building C object CMakeFiles/cobitools3.dir/obierrno.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obierrno.c.o -MF CMakeFiles/cobitools3.dir/obierrno.c.o.d -o CMakeFiles/cobitools3.dir/obierrno.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obierrno.c" [ 5%] Building C object CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -MF CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o.d -o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms_taxonomy.c" [ 7%] Building C object CMakeFiles/cobitools3.dir/obiblob_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -MF CMakeFiles/cobitools3.dir/obiblob_indexer.c.o.d -o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob_indexer.c" [ 9%] Building C object CMakeFiles/cobitools3.dir/obi_lcs.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_lcs.c.o -MF CMakeFiles/cobitools3.dir/obi_lcs.c.o.d -o CMakeFiles/cobitools3.dir/obi_lcs.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_lcs.c" [ 11%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_str.c" [ 13%] Building C object CMakeFiles/cobitools3.dir/bloom.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/bloom.c.o -MF CMakeFiles/cobitools3.dir/bloom.c.o.d -o CMakeFiles/cobitools3.dir/bloom.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/bloom.c" [ 15%] Building C object CMakeFiles/cobitools3.dir/build_reference_db.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/build_reference_db.c.o -MF CMakeFiles/cobitools3.dir/build_reference_db.c.o.d -o CMakeFiles/cobitools3.dir/build_reference_db.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/build_reference_db.c" [ 17%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_array.c" [ 19%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_idx.c" [ 21%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_bool.c" [ 23%] Building C object CMakeFiles/cobitools3.dir/libjson/json_utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -MF CMakeFiles/cobitools3.dir/libjson/json_utils.c.o.d -o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/json_utils.c" [ 25%] Building C object CMakeFiles/cobitools3.dir/libjson/cJSON.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -MF CMakeFiles/cobitools3.dir/libjson/cJSON.c.o.d -o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/cJSON.c" [ 26%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_blob.c" [ 28%] Building C object CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -MF CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o.d -o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/dna_seq_indexer.c" [ 30%] Building C object CMakeFiles/cobitools3.dir/obi_ecotag.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecotag.c.o -MF CMakeFiles/cobitools3.dir/obi_ecotag.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecotag.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecotag.c" [ 32%] Building C object CMakeFiles/cobitools3.dir/encode.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/encode.c.o -MF CMakeFiles/cobitools3.dir/encode.c.o.d -o CMakeFiles/cobitools3.dir/encode.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/encode.c" [ 34%] Building C object CMakeFiles/cobitools3.dir/obiavl.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiavl.c.o -MF CMakeFiles/cobitools3.dir/obiavl.c.o.d -o CMakeFiles/cobitools3.dir/obiavl.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiavl.c" [ 36%] Building C object 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CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_qual.c" [ 42%] Building C object CMakeFiles/cobitools3.dir/obi_clean.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_clean.c.o -MF CMakeFiles/cobitools3.dir/obi_clean.c.o.d -o CMakeFiles/cobitools3.dir/obi_clean.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_clean.c" [ 44%] Building C object CMakeFiles/cobitools3.dir/utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/utils.c.o -MF CMakeFiles/cobitools3.dir/utils.c.o.d -o CMakeFiles/cobitools3.dir/utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/utils.c" [ 46%] Building C object CMakeFiles/cobitools3.dir/uint8_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/uint8_indexer.c.o -MF CMakeFiles/cobitools3.dir/uint8_indexer.c.o.d -o CMakeFiles/cobitools3.dir/uint8_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/uint8_indexer.c" [ 48%] Building C object CMakeFiles/cobitools3.dir/murmurhash2.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" 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CMakeFiles/cobitools3.dir/obiview.c.o -MF CMakeFiles/cobitools3.dir/obiview.c.o.d -o CMakeFiles/cobitools3.dir/obiview.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiview.c" [ 53%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_int.c" [ 55%] Building C object CMakeFiles/cobitools3.dir/linked_list.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/linked_list.c.o -MF CMakeFiles/cobitools3.dir/linked_list.c.o.d -o CMakeFiles/cobitools3.dir/linked_list.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/linked_list.c" [ 57%] Building C object CMakeFiles/cobitools3.dir/obiblob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob.c.o -MF CMakeFiles/cobitools3.dir/obiblob.c.o.d -o CMakeFiles/cobitools3.dir/obiblob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob.c" [ 59%] Building C object CMakeFiles/cobitools3.dir/hashtable.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/hashtable.c.o -MF CMakeFiles/cobitools3.dir/hashtable.c.o.d -o CMakeFiles/cobitools3.dir/hashtable.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/hashtable.c" [ 61%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn.c" [ 63%] Building C object CMakeFiles/cobitools3.dir/char_str_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/char_str_indexer.c.o -MF CMakeFiles/cobitools3.dir/char_str_indexer.c.o.d -o CMakeFiles/cobitools3.dir/char_str_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/char_str_indexer.c" [ 65%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_float.c" [ 67%] Building C object CMakeFiles/cobitools3.dir/upperband.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/upperband.c.o -MF CMakeFiles/cobitools3.dir/upperband.c.o.d -o CMakeFiles/cobitools3.dir/upperband.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/upperband.c" [ 69%] Building C object CMakeFiles/cobitools3.dir/crc64.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/crc64.c.o -MF CMakeFiles/cobitools3.dir/crc64.c.o.d -o CMakeFiles/cobitools3.dir/crc64.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/crc64.c" [ 71%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_seq.c" [ 73%] Building C object CMakeFiles/cobitools3.dir/obilittlebigman.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obilittlebigman.c.o -MF CMakeFiles/cobitools3.dir/obilittlebigman.c.o.d -o CMakeFiles/cobitools3.dir/obilittlebigman.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obilittlebigman.c" [ 75%] Building C object CMakeFiles/cobitools3.dir/obidmscolumndir.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumndir.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumndir.c" [ 76%] Building C object CMakeFiles/cobitools3.dir/obidms.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms.c.o -MF CMakeFiles/cobitools3.dir/obidms.c.o.d -o CMakeFiles/cobitools3.dir/obidms.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms.c" [ 78%] Building C object CMakeFiles/cobitools3.dir/obi_ecopcr.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -MF CMakeFiles/cobitools3.dir/obi_ecopcr.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecopcr.c" [ 80%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -MF 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CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/libstki.c" [ 86%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_search.c" [ 88%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_parse.c" [ 90%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecodna.c" [ 92%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I 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"src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obitypes.c.o -MF CMakeFiles/cobitools3.dir/obitypes.c.o.d -o CMakeFiles/cobitools3.dir/obitypes.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obitypes.c" [ 98%] Building C object CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/array_indexer.c.o -MF CMakeFiles/cobitools3.dir/array_indexer.c.o.d -o CMakeFiles/cobitools3.dir/array_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/array_indexer.c" [100%] Linking C shared library libcobitools3.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cobitools3.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/cobitools3.dir/link.d -Wl,-z,relro -shared 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CMakeFiles/cobitools3.dir/obi_clean.c.o CMakeFiles/cobitools3.dir/utils.c.o CMakeFiles/cobitools3.dir/uint8_indexer.c.o CMakeFiles/cobitools3.dir/murmurhash2.c.o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o CMakeFiles/cobitools3.dir/obiview.c.o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o CMakeFiles/cobitools3.dir/linked_list.c.o CMakeFiles/cobitools3.dir/obiblob.c.o CMakeFiles/cobitools3.dir/hashtable.c.o CMakeFiles/cobitools3.dir/obidmscolumn.c.o CMakeFiles/cobitools3.dir/char_str_indexer.c.o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o CMakeFiles/cobitools3.dir/upperband.c.o CMakeFiles/cobitools3.dir/crc64.c.o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o CMakeFiles/cobitools3.dir/obilittlebigman.c.o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o CMakeFiles/cobitools3.dir/obidms.c.o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o CMakeFiles/cobitools3.dir/obitypes.c.o CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri running build_ext building 'obitools3.utils' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/utils.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.split' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/split.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.head' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/head.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.stats' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ecotag' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.test' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/test.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.less' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/less.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.annotate' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.align' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/align.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.clean' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.taxonomy' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.count' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/count.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.addtaxids' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.uniq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.grep' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.export' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ecopcr' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.import' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/import.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.rm' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.cat' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/cat.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.alignpairedend' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ngsfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.sort' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/sort.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.clean_dms' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.build_ref_db' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.tail' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/tail.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.history' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/history.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.ls' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ls.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.config' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/config.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.progress' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/progress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.temp' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/temp.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.arguments' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.command' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/command.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/command.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so building 'obitools3.apps.logging' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/logging.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/logging.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._nws' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign.apat_pattern' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._dynamic' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._rassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._qsrassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._qsassemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._assemble' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign.shifted_ali' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._freeendgapfm' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._freeendgap' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so building 'obitools3.libalign._solexapairend' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.header' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/format x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.fasta' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.tab' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.format.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.fasta' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.tab' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.writers.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.universal' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.header' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.embl' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.fasta' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.tab' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.ngsfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.genbank' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.embl_genbank_features' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so building 'obitools3.files.universalopener' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/files x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so building 'obitools3.files.linebuffer' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so building 'obitools3.files.uncompress' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.dms' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.obiseq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.object' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.taxo.taxo' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.view.view' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.column' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.column_idx' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.bool' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.qual' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.str' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.seq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.char' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.int' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so building 'obitools3.dms.column.typed_column.float' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so building 'obitools3.uri.decode' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/obi -> build/scripts-3.12 changing mode of build/scripts-3.12/obi from 644 to 755 dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' Traceback (most recent call last): File "/usr/bin/pybuild", line 604, in main(cfg) File "/usr/bin/pybuild", line 375, in main iversions = build_sorted(versions, impl=ipreter.impl) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 450, in build_sorted default_ver = default(impl) ^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 381, in default raise ValueError("interpreter implementation not supported: %r" % impl) ValueError: interpreter implementation not supported: '' PYTHONPATH= \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root '/build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (0.1s) -- Generating done (0.1s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[4]: Nothing to be done for 'CMakeFiles/cobitools3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info writing python/OBITools3.egg-info/PKG-INFO writing dependency_links to python/OBITools3.egg-info/dependency_links.txt writing top-level names to python/OBITools3.egg-info/top_level.txt writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'python' warning: no files found matching '*.h' under directory 'python' warning: no files found matching '*.txt' under directory 'doc/sphinx/source' warning: no files found matching '*.rst' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext' warning: no files found matching 'doc/sphinx/Makefile' warning: no files found matching 'doc/sphinx/Doxyfile' adding license file 'LICENSE' writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' Copying python/OBITools3.egg-info to /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/OBITools3-3.0.1b26.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obi -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin/obi to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: symbol log10 used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-3_amd64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1591455 and its subdirectories I: Current time: Wed Jan 8 21:17:31 +14 2025 I: pbuilder-time-stamp: 1736320651 + false + set +x Wed Jan 8 07:17:31 UTC 2025 I: Signing ./b2/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo as obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc Wed Jan 8 07:17:31 UTC 2025 I: Signed ./b2/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo as ./b2/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc Wed Jan 8 07:17:31 UTC 2025 - build #2 for obitools/trixie/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Wed Jan 8 07:17:31 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-EQBFB9ot, removing. /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV: total 220 drwxr-xr-x 2 jenkins jenkins 4096 Jan 8 06:43 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 8 07:17 b2 -rw-r--r-- 1 jenkins jenkins 2210 Nov 21 15:46 obitools_3.0.1~b26+dfsg-3.dsc -rw------- 1 jenkins jenkins 207484 Jan 8 06:43 rbuildlog.EghY38N /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b1: total 26204 -rw-r--r-- 1 jenkins jenkins 203834 Jan 8 06:43 build.log -rw-r--r-- 1 jenkins jenkins 17186704 Jan 8 06:43 obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 3556832 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2210 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3.dsc -rw-r--r-- 1 jenkins jenkins 7323 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8205 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1808 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 5800384 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1652 Jan 8 06:43 obitools_3.0.1~b26+dfsg-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b2: total 26164 -rw-r--r-- 1 jenkins jenkins 207431 Jan 8 07:17 build.log -rw-r--r-- 1 jenkins jenkins 17186704 Jan 8 07:17 obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 3556832 Jan 8 07:17 obitools_3.0.1~b26+dfsg-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2210 Jan 8 07:17 obitools_3.0.1~b26+dfsg-3.dsc -rw-r--r-- 1 jenkins jenkins 7312 Jan 8 07:17 obitools_3.0.1~b26+dfsg-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8194 Jan 8 07:17 obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1808 Jan 8 07:17 obitools_3.0.1~b26+dfsg-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 5800384 Jan 8 07:17 obitools_3.0.1~b26+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1652 Jan 8 07:17 obitools_3.0.1~b26+dfsg-3_source.changes Wed Jan 8 07:17:32 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Wed Jan 8 07:17:34 UTC 2025 I: obitools_3.0.1~b26+dfsg-3_amd64.changes: Format: 1.8 Date: Thu, 21 Nov 2024 16:40:55 +0100 Source: obitools Binary: obitools obitools-dbgsym Architecture: amd64 Version: 3.0.1~b26+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: obitools - programs to analyze NGS data in a DNA metabarcoding context Changes: obitools (3.0.1~b26+dfsg-3) unstable; urgency=medium . * Team upload. * Install the shared library to the correct directory and remove the rpath. * Add a basic smoke autopkgtest * Improve cross-building * Add another smoke test * Add tutorial data and an autopkgtest using it. * d/control: new upstream doesn't have any docs to build. Remove remaining sphinx parts. * Added patch to fix running on Python3.12+. Checksums-Sha1: f8b8355fe231e7166d6294ee0eaf59bb55b0e053 17186704 obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb 104a710436c5b5df72dc02abc581d0a25115d16f 7323 obitools_3.0.1~b26+dfsg-3_amd64.buildinfo fcf34ed8653a584017d3098662bc3a80ce5f401a 5800384 obitools_3.0.1~b26+dfsg-3_amd64.deb Checksums-Sha256: 48b6b98d97e2377292effe484667f12de14049f08577ed86f4a470f40ecd7765 17186704 obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb ee55c804585e3d6517bec74feaf51ee48a06395a02030ae04b7395e8e1e0b250 7323 obitools_3.0.1~b26+dfsg-3_amd64.buildinfo d3e000e3a69c62fa42210f10de2c70f39245394635520e62242dad490f86a152 5800384 obitools_3.0.1~b26+dfsg-3_amd64.deb Files: ac6a1553df5969034729435f4c577ca7 17186704 debug optional obitools-dbgsym_3.0.1~b26+dfsg-3_amd64.deb d154191a8dffef84ed37c81f5dda84cb 7323 science optional obitools_3.0.1~b26+dfsg-3_amd64.buildinfo 3399aa2c0a68336aaf283e52cb301363 5800384 science optional obitools_3.0.1~b26+dfsg-3_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/obitools_3.0.1~b26+dfsg-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/obitools_3.0.1~b26+dfsg-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/obitools_3.0.1~b26+dfsg-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/obitools_3.0.1~b26+dfsg-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/obitools_3.0.1~b26+dfsg-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-08 06:43:56.827292150 +0000 +++ b2/build.log 2025-01-08 07:17:32.367554091 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Feb 10 00:55:37 -12 2026 -I: pbuilder-time-stamp: 1770728137 +I: Current time: Wed Jan 8 20:44:00 +14 2025 +I: pbuilder-time-stamp: 1736318640 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -16,11 +16,7 @@ I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz] I: copying [./obitools_3.0.1~b26+dfsg-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Nov 21 15:44:48 2024 -gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 -gpgv: issuer "crusoe@debian.org" -gpgv: Can't check signature: No public key -dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-3.dsc: no acceptable signature found +dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-3.dsc: unsupported subcommand dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-3.debian.tar.xz @@ -32,52 +28,84 @@ dpkg-source: info: applying python3.12 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3307650/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 8 06:44 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='575ea4ef94834473bb2bfa5ab5719fd3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3307650' - PS1='# ' - PS2='> ' + INVOCATION_ID=22334d54d18e48a8aaaf8228a35b55a3 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1591455 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/pbuilderrc_9sMq --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/pbuilderrc_N1SZ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b2 --logfile b2/build.log obitools_3.0.1~b26+dfsg-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3307650/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -90,7 +118,7 @@ Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19975 files and directories currently installed.) +(Reading database ... 19853 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -118,11 +146,11 @@ pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: - autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} + autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget -0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded. -Need to get 57.9 MB of archives. After unpacking 232 MB will be used. +0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. +Need to get 60.5 MB of archives. After unpacking 241 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] @@ -131,94 +159,100 @@ Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB] -Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] -Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] -Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] -Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] -Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] -Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] -Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] -Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] -Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] -Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] -Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] -Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] -Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-3 [677 kB] -Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] -Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] -Get: 23 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] -Get: 24 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] -Get: 25 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] -Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] -Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] -Get: 28 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] -Get: 29 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-3 [200 kB] -Get: 30 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] -Get: 31 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] -Get: 32 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-13 [91.9 kB] -Get: 33 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] -Get: 34 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] -Get: 35 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] -Get: 36 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] -Get: 37 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] -Get: 38 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] -Get: 39 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-3 [723 kB] -Get: 40 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.2-1 [2267 kB] -Get: 41 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] -Get: 42 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] -Get: 43 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] -Get: 44 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] -Get: 45 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] -Get: 46 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] -Get: 47 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] -Get: 48 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] -Get: 49 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] -Get: 50 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] -Get: 51 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] -Get: 52 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] -Get: 53 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] -Get: 54 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] -Get: 55 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] -Get: 56 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.2-1 [11.9 MB] -Get: 57 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-1+b1 [3157 kB] -Get: 58 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.23 [90.6 kB] -Get: 59 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] -Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] -Get: 61 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] -Get: 62 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] -Get: 63 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] -Get: 64 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] -Get: 65 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] -Get: 66 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-3 [1600 kB] -Get: 67 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] -Get: 68 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] -Get: 69 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.23 [919 kB] -Get: 70 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] -Get: 71 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] -Get: 72 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] -Get: 73 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] -Get: 74 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] -Get: 75 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] -Get: 76 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] -Get: 77 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] -Get: 78 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] -Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] -Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] -Get: 81 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241217 [113 kB] -Get: 82 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] -Get: 83 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] -Get: 84 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] -Get: 85 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-3 [30.4 kB] -Get: 86 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.8-3 [2154 kB] -Get: 87 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Get: 88 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.8-3 [5134 kB] -Get: 89 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.8-1 [10.1 kB] -Get: 90 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.8-3 [505 kB] -Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.8-1 [26.1 kB] -Fetched 57.9 MB in 1s (110 MB/s) +Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] +Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] +Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] +Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] +Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] +Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] +Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] +Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] +Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] +Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] +Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] +Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] +Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] +Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-3 [677 kB] +Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] +Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] +Get: 24 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] +Get: 25 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] +Get: 26 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] +Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] +Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] +Get: 29 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] +Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-3 [200 kB] +Get: 31 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] +Get: 32 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] +Get: 33 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-13 [91.9 kB] +Get: 34 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] +Get: 35 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] +Get: 36 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] +Get: 37 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] +Get: 38 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] +Get: 39 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] +Get: 40 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-3 [723 kB] +Get: 41 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.2-1 [2267 kB] +Get: 42 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] +Get: 43 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] +Get: 44 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] +Get: 45 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] +Get: 46 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] +Get: 47 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] +Get: 48 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] +Get: 49 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] +Get: 50 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] +Get: 51 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] +Get: 52 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] +Get: 53 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] +Get: 54 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] +Get: 55 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] +Get: 56 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] +Get: 57 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] +Get: 58 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] +Get: 59 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] +Get: 60 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] +Get: 61 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] +Get: 62 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.2-1 [11.9 MB] +Get: 63 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-1+b1 [3157 kB] +Get: 64 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.23 [90.6 kB] +Get: 65 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] +Get: 66 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] +Get: 67 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] +Get: 68 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] +Get: 69 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] +Get: 70 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] +Get: 71 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] +Get: 72 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-3 [1600 kB] +Get: 73 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] +Get: 74 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] +Get: 75 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.23 [919 kB] +Get: 76 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] +Get: 77 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] +Get: 78 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] +Get: 79 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] +Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] +Get: 81 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] +Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] +Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] +Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] +Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] +Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] +Get: 87 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241217 [113 kB] +Get: 88 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] +Get: 89 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] +Get: 90 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] +Get: 91 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-3 [30.4 kB] +Get: 92 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.8-3 [2154 kB] +Get: 93 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] +Get: 94 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.8-3 [5134 kB] +Get: 95 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.8-1 [10.1 kB] +Get: 96 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.8-3 [505 kB] +Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.8-1 [26.1 kB] +Fetched 60.5 MB in 8s (7377 kB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19975 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19853 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. @@ -231,7 +265,7 @@ Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20295 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20173 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_amd64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. @@ -243,57 +277,60 @@ Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... +Selecting previously unselected package libffi8:amd64. +Preparing to unpack .../04-libffi8_3.4.6-1_amd64.deb ... +Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:amd64. -Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... +Preparing to unpack .../05-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. -Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_amd64.deb ... +Preparing to unpack .../06-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. -Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... +Preparing to unpack .../07-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21241 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.8-1_amd64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libproc2-0:amd64. @@ -362,146 +399,161 @@ Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../22-libbrotli1_1.1.0-2+b6_amd64.deb ... 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Unpacking libpython3.12-dev:amd64 (3.12.8-3) ... Selecting previously unselected package libpython3-dev:amd64. -Preparing to unpack .../67-libpython3-dev_3.12.8-1_amd64.deb ... +Preparing to unpack .../72-libpython3-dev_3.12.8-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.12.8-1) ... Selecting previously unselected package python3.12-dev. -Preparing to unpack .../68-python3.12-dev_3.12.8-3_amd64.deb ... +Preparing to unpack .../73-python3.12-dev_3.12.8-3_amd64.deb ... Unpacking python3.12-dev (3.12.8-3) ... Selecting previously unselected package python3-dev. -Preparing to unpack .../69-python3-dev_3.12.8-1_amd64.deb ... +Preparing to unpack .../74-python3-dev_3.12.8-1_amd64.deb ... Unpacking python3-dev (3.12.8-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... @@ -515,7 +567,6 @@ Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libuv1t64:amd64 (1.48.0-7) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... -Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.22.5-3) ... Setting up m4 (1.4.19-4) ... @@ -527,24 +578,26 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Feb 10 12:56:11 UTC 2026. -Universal Time is now: Tue Feb 10 12:56:11 UTC 2026. +Local time is now: Wed Jan 8 06:46:54 UTC 2025. +Universal Time is now: Wed Jan 8 06:46:54 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... -Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-6) ... +Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.22.5-3) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... +Setting up libffi8:amd64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... +Setting up libtasn1-6:amd64 (4.19.0-3+b3) ... Setting up netbase (6.4) ... Setting up cmake-data (3.31.2-1) ... Setting up librhash1:amd64 (1.4.5-1) ... @@ -559,26 +612,31 @@ Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-3) ... Setting up libtool (2.4.7-8) ... -Setting up libldap-2.5-0:amd64 (2.5.19+dfsg-1) ... +Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... +Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libjs-sphinxdoc (8.1.3-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... -Setting up libcurl4t64:amd64 (8.11.1-1) ... +Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... +Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. +Setting up libldap-2.5-0:amd64 (2.5.19+dfsg-1) ... +Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... -Setting up cmake (3.31.2-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... +Setting up libcurl4t64:amd64 (8.11.1-1) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.23) ... Setting up libpython3.12t64:amd64 (3.12.8-3) ... +Setting up cmake (3.31.2-1) ... Setting up libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up libpython3.12-dev:amd64 (3.12.8-3) ... @@ -608,7 +666,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-3_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -636,85 +698,85 @@ dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling python/obitools3/utils.pyx because it changed. -Compiling python/obitools3/dms/dms.pyx because it changed. -Compiling python/obitools3/dms/obiseq.pyx because it changed. -Compiling python/obitools3/dms/object.pyx because it changed. -Compiling python/obitools3/dms/taxo/taxo.pyx because it changed. -Compiling python/obitools3/dms/view/view.pyx because it changed. -Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed. -Compiling python/obitools3/dms/column/column.pyx because it changed. -Compiling python/obitools3/dms/column/column_idx.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/char.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/float.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/seq.pyx because it changed. -Compiling python/obitools3/dms/column/typed_column/int.pyx because it changed. -Compiling python/obitools3/apps/temp.pyx because it changed. -Compiling python/obitools3/apps/command.pyx because it changed. -Compiling python/obitools3/apps/arguments.pyx because it changed. -Compiling python/obitools3/apps/config.pyx because it changed. -Compiling python/obitools3/apps/logging.pyx because it changed. -Compiling python/obitools3/apps/progress.pyx because it changed. -Compiling python/obitools3/files/universalopener.pyx because it changed. -Compiling python/obitools3/files/linebuffer.pyx because it changed. -Compiling python/obitools3/files/uncompress.pyx because it changed. -Compiling python/obitools3/uri/decode.pyx because it changed. -Compiling python/obitools3/writers/fasta.pyx because it changed. -Compiling python/obitools3/writers/tab.pyx because it changed. -Compiling python/obitools3/writers/fastq.pyx because it changed. -Compiling python/obitools3/libalign/_rassemble.pyx because it changed. -Compiling python/obitools3/libalign/_dynamic.pyx because it changed. -Compiling python/obitools3/libalign/_qsassemble.pyx because it changed. -Compiling python/obitools3/libalign/_freeendgap.pyx because it changed. -Compiling python/obitools3/libalign/_solexapairend.pyx because it changed. -Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed. -Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed. -Compiling python/obitools3/libalign/apat_pattern.pyx because it changed. -Compiling python/obitools3/libalign/_nws.pyx because it changed. -Compiling python/obitools3/libalign/_assemble.pyx because it changed. -Compiling python/obitools3/libalign/shifted_ali.pyx because it changed. -Compiling python/obitools3/format/fasta.pyx because it changed. -Compiling python/obitools3/format/tab.pyx because it changed. -Compiling python/obitools3/format/header.pyx because it changed. -Compiling python/obitools3/format/fastq.pyx because it changed. -Compiling python/obitools3/commands/annotate.pyx because it changed. -Compiling python/obitools3/commands/ecotag.pyx because it changed. -Compiling python/obitools3/commands/build_ref_db.pyx because it changed. -Compiling python/obitools3/commands/clean.pyx because it changed. +Compiling python/obitools3/commands/split.pyx because it changed. Compiling python/obitools3/commands/head.pyx because it changed. +Compiling python/obitools3/commands/stats.pyx because it changed. +Compiling python/obitools3/commands/ecotag.pyx because it changed. Compiling python/obitools3/commands/test.pyx because it changed. -Compiling python/obitools3/commands/rm.pyx because it changed. -Compiling python/obitools3/commands/history.pyx because it changed. -Compiling python/obitools3/commands/ngsfilter.pyx because it changed. -Compiling python/obitools3/commands/addtaxids.pyx because it changed. Compiling python/obitools3/commands/less.pyx because it changed. -Compiling python/obitools3/commands/grep.pyx because it changed. -Compiling python/obitools3/commands/ls.pyx because it changed. -Compiling python/obitools3/commands/taxonomy.pyx because it changed. +Compiling python/obitools3/commands/annotate.pyx because it changed. Compiling python/obitools3/commands/align.pyx because it changed. +Compiling python/obitools3/commands/clean.pyx because it changed. +Compiling python/obitools3/commands/taxonomy.pyx because it changed. +Compiling python/obitools3/commands/count.pyx because it changed. +Compiling python/obitools3/commands/addtaxids.pyx because it changed. Compiling python/obitools3/commands/uniq.pyx because it changed. +Compiling python/obitools3/commands/grep.pyx because it changed. +Compiling python/obitools3/commands/export.pyx because it changed. +Compiling python/obitools3/commands/ecopcr.pyx because it changed. Compiling python/obitools3/commands/import.pyx because it changed. +Compiling python/obitools3/commands/rm.pyx because it changed. Compiling python/obitools3/commands/cat.pyx because it changed. -Compiling python/obitools3/commands/stats.pyx because it changed. -Compiling python/obitools3/commands/ecopcr.pyx because it changed. +Compiling python/obitools3/commands/alignpairedend.pyx because it changed. +Compiling python/obitools3/commands/ngsfilter.pyx because it changed. Compiling python/obitools3/commands/sort.pyx because it changed. -Compiling python/obitools3/commands/export.pyx because it changed. -Compiling python/obitools3/commands/count.pyx because it changed. Compiling python/obitools3/commands/clean_dms.pyx because it changed. +Compiling python/obitools3/commands/build_ref_db.pyx because it changed. Compiling python/obitools3/commands/tail.pyx because it changed. -Compiling python/obitools3/commands/split.pyx because it changed. -Compiling python/obitools3/commands/alignpairedend.pyx because it changed. +Compiling python/obitools3/commands/history.pyx because it changed. +Compiling python/obitools3/commands/ls.pyx because it changed. +Compiling python/obitools3/apps/config.pyx because it changed. +Compiling python/obitools3/apps/progress.pyx because it changed. +Compiling python/obitools3/apps/temp.pyx because it changed. +Compiling python/obitools3/apps/arguments.pyx because it changed. +Compiling python/obitools3/apps/command.pyx because it changed. +Compiling python/obitools3/apps/logging.pyx because it changed. +Compiling python/obitools3/libalign/_nws.pyx because it changed. +Compiling python/obitools3/libalign/apat_pattern.pyx because it changed. +Compiling python/obitools3/libalign/_dynamic.pyx because it changed. +Compiling python/obitools3/libalign/_rassemble.pyx because it changed. +Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed. +Compiling python/obitools3/libalign/_qsassemble.pyx because it changed. +Compiling python/obitools3/libalign/_assemble.pyx because it changed. +Compiling python/obitools3/libalign/shifted_ali.pyx because it changed. +Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed. +Compiling python/obitools3/libalign/_freeendgap.pyx because it changed. +Compiling python/obitools3/libalign/_solexapairend.pyx because it changed. +Compiling python/obitools3/format/header.pyx because it changed. +Compiling python/obitools3/format/fasta.pyx because it changed. +Compiling python/obitools3/format/tab.pyx because it changed. +Compiling python/obitools3/format/fastq.pyx because it changed. +Compiling python/obitools3/writers/fasta.pyx because it changed. +Compiling python/obitools3/writers/tab.pyx because it changed. +Compiling python/obitools3/writers/fastq.pyx because it changed. +Compiling python/obitools3/parsers/universal.pyx because it changed. +Compiling python/obitools3/parsers/header.pyx because it changed. Compiling python/obitools3/parsers/embl.pyx because it changed. Compiling python/obitools3/parsers/fasta.pyx because it changed. +Compiling python/obitools3/parsers/tab.pyx because it changed. Compiling python/obitools3/parsers/ngsfilter.pyx because it changed. Compiling python/obitools3/parsers/genbank.pyx because it changed. -Compiling python/obitools3/parsers/tab.pyx because it changed. -Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed. -Compiling python/obitools3/parsers/header.pyx because it changed. -Compiling python/obitools3/parsers/universal.pyx because it changed. Compiling python/obitools3/parsers/fastq.pyx because it changed. +Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed. +Compiling python/obitools3/files/universalopener.pyx because it changed. +Compiling python/obitools3/files/linebuffer.pyx because it changed. +Compiling python/obitools3/files/uncompress.pyx because it changed. +Compiling python/obitools3/dms/dms.pyx because it changed. +Compiling python/obitools3/dms/obiseq.pyx because it changed. +Compiling python/obitools3/dms/object.pyx because it changed. +Compiling python/obitools3/dms/taxo/taxo.pyx because it changed. +Compiling python/obitools3/dms/view/view.pyx because it changed. +Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed. +Compiling python/obitools3/dms/column/column.pyx because it changed. +Compiling python/obitools3/dms/column/column_idx.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/seq.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/char.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/int.pyx because it changed. +Compiling python/obitools3/dms/column/typed_column/float.pyx because it changed. +Compiling python/obitools3/uri/decode.pyx because it changed. [ 1/80] Cythonizing python/obitools3/apps/arguments.pyx [ 2/80] Cythonizing python/obitools3/apps/command.pyx [ 3/80] Cythonizing python/obitools3/apps/config.pyx @@ -819,8 +881,8 @@ -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (0.5s) --- Generating done (0.0s) +-- Configuring done (4.4s) +-- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: @@ -962,14 +1024,29 @@ make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 -copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 +copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3 +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands +copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps +copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups +copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign +copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign +copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format +copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers +copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers +copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files +copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi -copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view @@ -978,281 +1055,266 @@ copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps -copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups -copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files -copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi +copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers -copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign -copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign -copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format -copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands -copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers -copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers running build_ext building 'obitools3.utils' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/utils.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.dms' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.obiseq' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.object' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.taxo.taxo' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.view.view' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.column' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.column_idx' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.char' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.qual' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.bool' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.str' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so -building 'obitools3.dms.column.typed_column.float' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc 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src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/temp.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so -building 'obitools3.apps.command' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc 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build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so -building 'obitools3.apps.logging' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/logging.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/apps/logging.o -w 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src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so -building 'obitools3.uri.decode' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so -building 'obitools3.writers.fasta' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so -building 'obitools3.writers.tab' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so -building 'obitools3.writers.fastq' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._rassemble' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._dynamic' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._qsassemble' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._freeendgap' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._solexapairend' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._freeendgapfm' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._qsrassemble' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign.apat_pattern' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 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build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign._assemble' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so -building 'obitools3.libalign.shifted_ali' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so -building 'obitools3.format.fasta' extension -creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/format -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time 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build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so -building 'obitools3.format.header' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o 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-L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.annotate' extension +building 'obitools3.commands.split' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.ecotag' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.build_ref_db' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.clean' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/split.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.head' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/head.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.stats' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.ecotag' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.test' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/test.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.rm' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.history' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/history.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.ngsfilter' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.addtaxids' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.less' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/less.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.grep' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.ls' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ls.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.taxonomy' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.annotate' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.align' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/align.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.clean' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.taxonomy' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.count' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/count.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.addtaxids' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.uniq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.grep' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.export' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.ecopcr' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.import' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/import.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.rm' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.cat' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/cat.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.stats' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.ecopcr' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.alignpairedend' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.ngsfilter' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.sort' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/sort.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so -building 'obitools3.commands.export' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o 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/build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so building 'obitools3.commands.clean_dms' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so +building 'obitools3.commands.build_ref_db' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o 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/build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._rassemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._qsrassemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so +building 'obitools3.libalign._qsassemble' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o 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/build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.writers.fasta' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu 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/build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so +building 'obitools3.writers.fastq' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.universal' extension creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.header' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.embl' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.fasta' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.tab' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.ngsfilter' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.genbank' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.tab' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.embl_genbank_features' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.header' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so -building 'obitools3.parsers.universal' extension -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC -x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so building 'obitools3.parsers.fastq' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -w -fPIC x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.parsers.embl_genbank_features' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so +building 'obitools3.files.universalopener' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/files +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so +building 'obitools3.files.linebuffer' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so +building 'obitools3.files.uncompress' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.dms' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.obiseq' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.object' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.taxo.taxo' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.view.view' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.column' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.column_idx' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.bool' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.qual' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.str' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.seq' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.char' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.int' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so +building 'obitools3.dms.column.typed_column.float' extension +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so +building 'obitools3.uri.decode' extension +creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC +x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/obi -> build/scripts-3.12 @@ -1306,8 +1368,8 @@ to work with policies introduced by or earlier. --- Configuring done (0.0s) --- Generating done (0.0s) +-- Configuring done (0.1s) +-- Generating done (0.1s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' @@ -1341,140 +1403,140 @@ running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/view/view.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/object.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/config.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/temp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/command.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/logging.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/progress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/apps/arguments.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps +creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi +copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/universalopener.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/uncompress.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/uri/decode.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/writers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/utils.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/format/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/rm.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/test.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/stats.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/history.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/align.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/count.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/grep.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/tail.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/head.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/uniq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/split.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/sort.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/export.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/cat.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ls.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/taxonomy.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/import.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/annotate.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/less.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/commands/clean.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands -creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/universal.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/header.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/tab.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc +byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info @@ -1541,12 +1603,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1591455/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3307650 and its subdirectories -I: Current time: Tue Feb 10 01:06:56 -12 2026 -I: pbuilder-time-stamp: 1770728816 +I: removing directory /srv/workspace/pbuilder/1591455 and its subdirectories +I: Current time: Wed Jan 8 21:17:31 +14 2025 +I: pbuilder-time-stamp: 1736320651 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/obitools_3.0.1~b26+dfsg-3.diff: 93.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/obitools_3.0.1~b26+dfsg-3.diff.gz b2/build.log: 90.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 91.1% -- replaced with stdout Wed Jan 8 07:17:35 UTC 2025 I: diffoscope 284 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_obitools_trixie_amd64_1736320655 + touch /var/log/reproducible-builds/diffoscope_stamp_obitools_trixie_amd64_1736320655 + RESULT=0 + systemd-run '--description=diffoscope on obitools/3.0.1~b26+dfsg-3 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_22-29954 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV --run-session -c jenkins-reproducible-trixie-diffoscope-88d1e73f-74f1-4c52-aba0-2d2be4087a80 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/dbd-tmp-8WJDqMd ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/obitools_3.0.1~b26+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/obitools_3.0.1~b26+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/obitools_3.0.1~b26+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b1/obitools_3.0.1~b26+dfsg-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b2/obitools_3.0.1~b26+dfsg-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_22-29954.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/obitools_3.0.1~b26+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/obitools_3.0.1~b26+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/obitools_3.0.1~b26+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b1/obitools_3.0.1~b26+dfsg-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.qdEhqwMV/b2/obitools_3.0.1~b26+dfsg-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.523s) 0.523s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.207s) 0.207s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 818ms CPU time consumed: 819ms _ _ _ _ ___ | |__ (_) |_ ___ ___ | |___ / _ \| '_ \| | __/ _ \ / _ \| / __| | (_) | |_) | | || (_) | (_) | \__ \ \___/|_.__/|_|\__\___/ \___/|_|___/ Wed Jan 8 07:17:36 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Wed Jan 8 07:17:36 UTC 2025 I: obitools from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-08 07:17:36] INFO: Starting at 2025-01-08 07:17:36.806208 [2025-01-08 07:17:36] INFO: Generating the pages of 1 package(s) [2025-01-08 07:17:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/obitools_3.0.1~b26+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/obitools_3.0.1~b26+dfsg-3.diff.gz is missing [2025-01-08 07:17:37] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/obitools didn't produce a buildlog, even though it has been built. [2025-01-08 07:17:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/obitools_3.0.1~b26+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/obitools_3.0.1~b26+dfsg-3.diff.gz is missing [2025-01-08 07:17:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/obitools_1.2.13+dfsg-5.diff.gz is missing [2025-01-08 07:17:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/obitools_1.2.13+dfsg-5.diff.gz is missing [2025-01-08 07:17:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/obitools_1.2.13+dfsg-5.diff.gz is missing [2025-01-08 07:17:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/obitools_1.2.13+dfsg-3.diff.gz is missing [2025-01-08 07:17:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/obitools_1.2.13+dfsg-3.diff.gz is missing [2025-01-08 07:17:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/obitools_1.2.13+dfsg-3.diff.gz is missing [2025-01-08 07:17:37] INFO: Finished at 2025-01-08 07:17:37.163337, took: 0:00:00.357133 Wed Jan 8 07:17:37 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/obitools.html Wed Jan 8 07:17:37 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Jan 8 07:17:37 UTC 2025 I: Submitting 12K b1/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc https://buildinfo.debian.net/104a710436c5b5df72dc02abc581d0a25115d16f/obitools_3.0.1~b26+dfsg-3_amd64 Wed Jan 8 07:17:38 UTC 2025 I: Submitting 12K b2/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc https://buildinfo.debian.net/a7d9489d9375e5cdc3bc8b8a563ba89ef208571c/obitools_3.0.1~b26+dfsg-3_amd64 Wed Jan 8 07:17:38 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jan 8 07:17:38 UTC 2025 I: Done submitting .buildinfo files. Wed Jan 8 07:17:38 UTC 2025 I: Removing signed obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc files: removed './b1/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc' removed './b2/obitools_3.0.1~b26+dfsg-3_amd64.buildinfo.asc' 1736320658 amd64 trixie obitools Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/obitools_3.0.1~b26+dfsg-3.rbuild.log: 89.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/obitools_3.0.1~b26+dfsg-3.rbuild.log.gz [2025-01-08 07:17:39] INFO: Starting at 2025-01-08 07:17:39.103336 [2025-01-08 07:17:39] INFO: Generating the pages of 1 package(s) [2025-01-08 07:17:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/obitools_3.0.1~b26+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/obitools_3.0.1~b26+dfsg-3.diff.gz is missing [2025-01-08 07:17:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/obitools_3.0.1~b26+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/obitools_3.0.1~b26+dfsg-3.diff.gz is missing [2025-01-08 07:17:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/obitools_1.2.13+dfsg-5.diff.gz is missing [2025-01-08 07:17:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/obitools_1.2.13+dfsg-5.diff.gz is missing [2025-01-08 07:17:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/obitools_1.2.13+dfsg-5.diff.gz is missing [2025-01-08 07:17:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/obitools_1.2.13+dfsg-3.diff.gz is missing [2025-01-08 07:17:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/obitools_1.2.13+dfsg-3.diff.gz is missing [2025-01-08 07:17:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/obitools_1.2.13+dfsg-3.diff.gz is missing [2025-01-08 07:17:39] INFO: Finished at 2025-01-08 07:17:39.455172, took: 0:00:00.351840 All cleanup done. Wed Jan 8 07:17:39 UTC 2025 - total duration: 0h 45m 12s. Wed Jan 8 07:17:39 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-QwAWp1z9, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 45min 15.348s CPU time consumed: 7.607s