Running as unit: rb-build-amd64_22-39705.service ==================================================================================== Fri Apr 25 02:08:26 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_22) on jenkins, called using "ionos5-amd64 ionos11-amd64" as arguments. Fri Apr 25 02:08:26 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-cZhlb7jm" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Apr 25 02:08:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Apr 25 02:08:26 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-KWO9VH' Fri Apr 25 02:08:27 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Apr 25 02:08:27 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-U0nQg6' ok, let's check if minimap is building anywhere yet… ok, minimap is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of minimap in unstable on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Fri Apr 25 02:08:38 UTC 2025 I: starting to build minimap/unstable/amd64 on jenkins on '2025-04-25 02:08' Fri Apr 25 02:08:38 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_22/39705/console.log 1745546918 amd64 unstable minimap Fri Apr 25 02:08:38 UTC 2025 I: Downloading source for unstable/minimap=0.2-8 --2025-04-25 02:08:38-- http://deb.debian.org/debian/pool/main/m/minimap/minimap_0.2-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2082 (2.0K) [text/prs.lines.tag] Saving to: ‘minimap_0.2-8.dsc’ 0K .. 100% 53.8M=0s 2025-04-25 02:08:38 (53.8 MB/s) - ‘minimap_0.2-8.dsc’ saved [2082/2082] --2025-04-25 02:08:38-- http://deb.debian.org/debian/pool/main/m/minimap/minimap_0.2-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2082 (2.0K) [text/prs.lines.tag] Saving to: ‘minimap_0.2-8.dsc’ 0K .. 100% 53.8M=0s 2025-04-25 02:08:38 (53.8 MB/s) - ‘minimap_0.2-8.dsc’ saved [2082/2082] Fri Apr 25 02:08:38 UTC 2025 I: minimap_0.2-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: minimap Binary: minimap, libminimap0, libminimap-dev Architecture: any Version: 0.2-8 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://github.com/lh3/minimap Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/minimap Vcs-Git: https://salsa.debian.org/med-team/minimap.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev Package-List: libminimap-dev deb libdevel optional arch=any libminimap0 deb libs optional arch=any minimap deb science optional arch=any Checksums-Sha1: 1ef8361ca16a92e898d901713b6f95e94c2b0db7 31209 minimap_0.2.orig.tar.gz 451abbf7a4669944e311dd06023fcd1626ed659f 78812 minimap_0.2-8.debian.tar.xz Checksums-Sha256: cfcf77cfe2d8d64b16ea60e0139363190eca4853da9dca9d872c38fe80bf5d68 31209 minimap_0.2.orig.tar.gz 1246ff77cb59091dbb4dd03d798c725c69769af2c6fb1c0877a71be42cf6ce57 78812 minimap_0.2-8.debian.tar.xz Files: 15257d99648f486e86580d8a7accc96b 31209 minimap_0.2.orig.tar.gz 2884b41071614e31427fa27be12d196c 78812 minimap_0.2-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAmV4dWIACgkQ6NN64vCf SHI29w//aTuDhuwP+mQ5rsA/LMDk4GGCtNKy4YNPxrW6CyOYuaOzthgSMNgO2wzg GK/o5YH2SULgPbAAkj1Dt96fF7j21rGEQCONcWnWoWjQddKCeEPowKO0wgBSv5jJ FgyZdpd/XDe3USO1APfyeLOhQOtUqlZB2ds1giX46dLz2m564hzwtVrHcAJP0J2z SckuuU+xcdi3/HRfggJ10b9ajkPt2JLNb/iO7xnO3lQw4aKJlYz1AifbSWyPsewX bfI20JZqaw6PWRX2h/nv/SuJcAa5rDVRIayXwDgietZ/yq+z5zMQszBSOV1G4vFX Uj7QA+FY/l1Rp6OFYTACnXgeOv2QZddHJzjD2MfUrOeVfwE3sqDVJt3l7gK5i7tL ujowiqpyKlM8xFtrDewWqKNHl1xudsxX0qFwl6M4tqosUSW2ZSio4ByIbgpvZTaf wGI1noDdoLcPLVCf/ghUy85G/Kxfpmi4M562ny4sUdboXGsCHGvOl1HggV0k5FMW wVFbKr7y7V0pkdPgLzzq4sJCmi4XD6la2TJ1C4Y4bApwZzpjfdaYQIqOdZRk0BlH Ej3DG6kXnnDUbQmUMMjn/EruOD/43Xe1R9bS0pJOeSJP/GYx0ItR6Rnc9yvkM2Ou BELWr7zDfXCJzyXQ0MKKcHlAdOaMmr4mpugkGRzZcbBJNIiEpDA= =MO0U -----END PGP SIGNATURE----- Fri Apr 25 02:08:38 UTC 2025 I: Checking whether the package is not for us Fri Apr 25 02:08:38 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Fri Apr 25 02:08:38 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Fri Apr 25 02:08:38 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Apr 25 02:08:38 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-H0W9pa' ==================================================================================== Thu May 28 08:31:38 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 minimap unstable /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv 0.2-8" as arguments. Thu May 28 08:31:38 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-xmXHKeIT" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu May 28 08:31:38 UTC 2026 I: Downloading source for unstable/minimap=0.2-8 Reading package lists... NOTICE: 'minimap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/minimap.git Please use: git clone https://salsa.debian.org/med-team/minimap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 112 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main minimap 0.2-8 (dsc) [2082 B] Get:2 http://deb.debian.org/debian unstable/main minimap 0.2-8 (tar) [31.2 kB] Get:3 http://deb.debian.org/debian unstable/main minimap 0.2-8 (diff) [78.8 kB] Fetched 112 kB in 0s (3461 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'minimap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/minimap.git Please use: git clone https://salsa.debian.org/med-team/minimap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 112 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main minimap 0.2-8 (dsc) [2082 B] Get:2 http://deb.debian.org/debian unstable/main minimap 0.2-8 (tar) [31.2 kB] Get:3 http://deb.debian.org/debian unstable/main minimap 0.2-8 (diff) [78.8 kB] Fetched 112 kB in 0s (3461 kB/s) Download complete and in download only mode ============================================================================= Building minimap in unstable on amd64 on ionos5-amd64 now. Date: Thu May 28 08:31:38 UTC 2026 Date UTC: Thu May 28 08:31:38 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed May 27 20:31:38 -12 2026 I: pbuilder-time-stamp: 1779957098 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [minimap_0.2-8.dsc] I: copying [./minimap_0.2.orig.tar.gz] I: copying [./minimap_0.2-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./minimap_0.2-8.dsc: unsupported subcommand dpkg-source: info: extracting minimap in minimap-0.2 dpkg-source: info: unpacking minimap_0.2.orig.tar.gz dpkg-source: info: unpacking minimap_0.2-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying ensure_64bit_value I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2473661/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='90cc850954b94141b3226867b31a94ee' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2473661' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/pbuilderrc_fA8a --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b1 --logfile b1/build.log minimap_0.2-8.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2473661/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After unpacking 44.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 12.1 MB in 0s (105 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/minimap-0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minimap_0.2-8_source.changes dpkg-buildpackage: info: source package minimap dpkg-buildpackage: info: source version 0.2-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/minimap-0.2' dh_auto_clean make -j42 clean make[2]: Entering directory '/build/reproducible-path/minimap-0.2' rm -fr gmon.out *.o a.out minimap sdust minimap-lite *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' test ! -e debian/bseq.h || mv debian/*.h /build/reproducible-path/minimap-0.2 make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/minimap-0.2' cp /build/reproducible-path/minimap-0.2/*.h debian/ dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/minimap-0.2' gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. main.c -o main.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. kthread.c -o kthread.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. misc.c -o misc.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. bseq.c -o bseq.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sketch.c -o sketch.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sdust.c -o sdust.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. index.c -o index.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. map.c -o map.o index.c: In function 'mm_idx_load': index.c:317:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 317 | fread(&mi->freq_thres, sizeof(float), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:319:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 319 | fread(mi->len, 4, mi->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:324:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 324 | fread(&l, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~ index.c:326:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 326 | fread(mi->name[i], 1, l, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:335:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fread(&b->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:337:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 337 | fread(b->p, 8, b->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:338:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fread(&size, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:345:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 345 | fread(x, 8, 2, fp); | ^~~~~~~~~~~~~~~~~~ ar -csru libminimap.a kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o gcc -shared -o libminimap.so.0 kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -fPIC -Wl,-soname,libminimap.so.0 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now ar: `u' modifier ignored since `D' is the default (see `U') gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wl,-z,relro -Wl,-z,now main.o -o minimap -L. -lminimap -lm -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/minimap-0.2' ln -s libminimap.so.* libminimap.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "*.h" /usr/include/minimap \ libminimap.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libminimap-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libminimap0/usr/lib/x86_64-linux-gnu mv ./libminimap.a debian/libminimap-dev/usr/lib/x86_64-linux-gnu mv ./libminimap.la debian/libminimap-dev/usr/lib/x86_64-linux-gnu || true mv ./libminimap.so debian/libminimap-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/minimap-0.2/libminimap.so.0 debian/libminimap0/usr/lib/x86_64-linux-gnu PKGDEV=libminimap-dev PKGSHL=libminimap0 install -d -m 755 debian/libminimap-dev//usr/include/minimap mv *.h debian/libminimap-dev//usr/include/minimap mv: cannot stat './libminimap.la': No such file or directory test ! -e debian/bseq.h || mv debian/*.h /build/reproducible-path/minimap-0.2 make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libminimap-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libminimap-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minimap' in '../minimap_0.2-8_amd64.deb'. dpkg-deb: building package 'minimap-dbgsym' in '../minimap-dbgsym_0.2-8_amd64.deb'. dpkg-deb: building package 'libminimap0' in '../libminimap0_0.2-8_amd64.deb'. dpkg-deb: building package 'libminimap0-dbgsym' in '../libminimap0-dbgsym_0.2-8_amd64.deb'. dpkg-deb: building package 'libminimap-dev' in '../libminimap-dev_0.2-8_amd64.deb'. dpkg-genbuildinfo --build=binary -O../minimap_0.2-8_amd64.buildinfo dpkg-genchanges --build=binary -O../minimap_0.2-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2473661 and its subdirectories I: Current time: Wed May 27 20:32:03 -12 2026 I: pbuilder-time-stamp: 1779957123 Thu May 28 08:32:03 UTC 2026 I: Signing ./b1/minimap_0.2-8_amd64.buildinfo as minimap_0.2-8_amd64.buildinfo.asc Thu May 28 08:32:03 UTC 2026 I: Signed ./b1/minimap_0.2-8_amd64.buildinfo as ./b1/minimap_0.2-8_amd64.buildinfo.asc Thu May 28 08:32:03 UTC 2026 - build #1 for minimap/unstable/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Thu May 28 08:32:03 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-xmXHKeIT, removing. /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 25 02:09 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 25 02:08 b2 -rw-r--r-- 1 jenkins jenkins 2082 Dec 12 2023 minimap_0.2-8.dsc -rw------- 1 jenkins jenkins 3173 Apr 25 02:08 rbuildlog.tS65UW1 /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b1: total 332 -rw-r--r-- 1 jenkins jenkins 25606 Apr 25 02:09 build.log -rw-r--r-- 1 jenkins jenkins 33308 Apr 25 02:09 libminimap-dev_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 51044 Apr 25 02:09 libminimap0-dbgsym_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 22392 Apr 25 02:09 libminimap0_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 56460 Apr 25 02:09 minimap-dbgsym_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 78812 Apr 25 02:09 minimap_0.2-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2082 Apr 25 02:09 minimap_0.2-8.dsc -rw-r--r-- 1 jenkins jenkins 6102 Apr 25 02:09 minimap_0.2-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6984 Apr 25 02:09 minimap_0.2-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2381 Apr 25 02:09 minimap_0.2-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 26532 Apr 25 02:09 minimap_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1254 Apr 25 02:09 minimap_0.2-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b2: total 0 Fri Apr 25 02:09:05 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 27 20:31:38 -12 2026 I: pbuilder-time-stamp: 1779957098 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [minimap_0.2-8.dsc] I: copying [./minimap_0.2.orig.tar.gz] I: copying [./minimap_0.2-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./minimap_0.2-8.dsc: unsupported subcommand dpkg-source: info: extracting minimap in minimap-0.2 dpkg-source: info: unpacking minimap_0.2.orig.tar.gz dpkg-source: info: unpacking minimap_0.2-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying ensure_64bit_value I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2473661/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='90cc850954b94141b3226867b31a94ee' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2473661' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/pbuilderrc_fA8a --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b1 --logfile b1/build.log minimap_0.2-8.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2473661/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After unpacking 44.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 12.1 MB in 0s (105 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/minimap-0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minimap_0.2-8_source.changes dpkg-buildpackage: info: source package minimap dpkg-buildpackage: info: source version 0.2-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/minimap-0.2' dh_auto_clean make -j42 clean make[2]: Entering directory '/build/reproducible-path/minimap-0.2' rm -fr gmon.out *.o a.out minimap sdust minimap-lite *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' test ! -e debian/bseq.h || mv debian/*.h /build/reproducible-path/minimap-0.2 make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/minimap-0.2' cp /build/reproducible-path/minimap-0.2/*.h debian/ dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/minimap-0.2' gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. main.c -o main.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. kthread.c -o kthread.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. misc.c -o misc.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. bseq.c -o bseq.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sketch.c -o sketch.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sdust.c -o sdust.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. index.c -o index.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. map.c -o map.o index.c: In function 'mm_idx_load': index.c:317:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 317 | fread(&mi->freq_thres, sizeof(float), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:319:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 319 | fread(mi->len, 4, mi->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:324:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 324 | fread(&l, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~ index.c:326:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 326 | fread(mi->name[i], 1, l, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:335:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fread(&b->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:337:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 337 | fread(b->p, 8, b->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:338:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fread(&size, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:345:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 345 | fread(x, 8, 2, fp); | ^~~~~~~~~~~~~~~~~~ ar -csru libminimap.a kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o gcc -shared -o libminimap.so.0 kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -fPIC -Wl,-soname,libminimap.so.0 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now ar: `u' modifier ignored since `D' is the default (see `U') gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wl,-z,relro -Wl,-z,now main.o -o minimap -L. -lminimap -lm -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/minimap-0.2' ln -s libminimap.so.* libminimap.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "*.h" /usr/include/minimap \ libminimap.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libminimap-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libminimap0/usr/lib/x86_64-linux-gnu mv ./libminimap.a debian/libminimap-dev/usr/lib/x86_64-linux-gnu mv ./libminimap.la debian/libminimap-dev/usr/lib/x86_64-linux-gnu || true mv ./libminimap.so debian/libminimap-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/minimap-0.2/libminimap.so.0 debian/libminimap0/usr/lib/x86_64-linux-gnu PKGDEV=libminimap-dev PKGSHL=libminimap0 install -d -m 755 debian/libminimap-dev//usr/include/minimap mv *.h debian/libminimap-dev//usr/include/minimap mv: cannot stat './libminimap.la': No such file or directory test ! -e debian/bseq.h || mv debian/*.h /build/reproducible-path/minimap-0.2 make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libminimap-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libminimap-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minimap' in '../minimap_0.2-8_amd64.deb'. dpkg-deb: building package 'minimap-dbgsym' in '../minimap-dbgsym_0.2-8_amd64.deb'. dpkg-deb: building package 'libminimap0' in '../libminimap0_0.2-8_amd64.deb'. dpkg-deb: building package 'libminimap0-dbgsym' in '../libminimap0-dbgsym_0.2-8_amd64.deb'. dpkg-deb: building package 'libminimap-dev' in '../libminimap-dev_0.2-8_amd64.deb'. dpkg-genbuildinfo --build=binary -O../minimap_0.2-8_amd64.buildinfo dpkg-genchanges --build=binary -O../minimap_0.2-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2473661 and its subdirectories I: Current time: Wed May 27 20:32:03 -12 2026 I: pbuilder-time-stamp: 1779957123 Fri Apr 25 02:09:06 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Fri Apr 25 02:09:06 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Fri Apr 25 02:09:06 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Apr 25 02:09:06 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-vKRp7d' ==================================================================================== Fri Apr 25 02:09:07 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 minimap unstable /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv 0.2-8" as arguments. Fri Apr 25 02:09:07 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ITNa4WCX" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Apr 25 02:09:07 UTC 2025 I: Downloading source for unstable/minimap=0.2-8 Reading package lists... NOTICE: 'minimap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/minimap.git Please use: git clone https://salsa.debian.org/med-team/minimap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 112 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main minimap 0.2-8 (dsc) [2082 B] Get:2 http://deb.debian.org/debian unstable/main minimap 0.2-8 (tar) [31.2 kB] Get:3 http://deb.debian.org/debian unstable/main minimap 0.2-8 (diff) [78.8 kB] Fetched 112 kB in 0s (2304 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'minimap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/minimap.git Please use: git clone https://salsa.debian.org/med-team/minimap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 112 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main minimap 0.2-8 (dsc) [2082 B] Get:2 http://deb.debian.org/debian unstable/main minimap 0.2-8 (tar) [31.2 kB] Get:3 http://deb.debian.org/debian unstable/main minimap 0.2-8 (diff) [78.8 kB] Fetched 112 kB in 0s (2304 kB/s) Download complete and in download only mode ============================================================================= Re-Building minimap in unstable on amd64 on ionos11-amd64 now. Date: Fri Apr 25 02:09:08 UTC 2025 Date UTC: Fri Apr 25 02:09:08 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/pbuilderrc_4DEn + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' minimap = debian-installer -o minimap = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' minimap = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/pbuilderrc_4DEn --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b2 --logfile b2/build.log minimap_0.2-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 25 16:09:09 +14 2025 I: pbuilder-time-stamp: 1745546949 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [minimap_0.2-8.dsc] I: copying [./minimap_0.2.orig.tar.gz] I: copying [./minimap_0.2-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./minimap_0.2-8.dsc: unsupported subcommand dpkg-source: info: extracting minimap in minimap-0.2 dpkg-source: info: unpacking minimap_0.2.orig.tar.gz dpkg-source: info: unpacking minimap_0.2-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying ensure_64bit_value I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 25 02:09 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=f7cd55e517664fc0b805fba4a7f549d6 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1559226 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/pbuilderrc_4DEn --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b2 --logfile b2/build.log minimap_0.2-8.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After unpacking 44.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 12.1 MB in 4s (2932 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/minimap-0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../minimap_0.2-8_source.changes dpkg-buildpackage: info: source package minimap dpkg-buildpackage: info: source version 0.2-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/minimap-0.2' dh_auto_clean make -j40 clean make[2]: Entering directory '/build/reproducible-path/minimap-0.2' rm -fr gmon.out *.o a.out minimap sdust minimap-lite *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' test ! -e debian/bseq.h || mv debian/*.h /build/reproducible-path/minimap-0.2 make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/minimap-0.2' cp /build/reproducible-path/minimap-0.2/*.h debian/ dh_auto_build make -j40 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/minimap-0.2' gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. main.c -o main.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. kthread.c -o kthread.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. misc.c -o misc.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. bseq.c -o bseq.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sketch.c -o sketch.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sdust.c -o sdust.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. index.c -o index.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. map.c -o map.o index.c: In function 'mm_idx_load': index.c:317:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 317 | fread(&mi->freq_thres, sizeof(float), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:319:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 319 | fread(mi->len, 4, mi->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:324:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 324 | fread(&l, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~ index.c:326:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 326 | fread(mi->name[i], 1, l, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:335:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fread(&b->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:337:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 337 | fread(b->p, 8, b->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:338:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fread(&size, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:345:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 345 | fread(x, 8, 2, fp); | ^~~~~~~~~~~~~~~~~~ ar -csru libminimap.a kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o ar: `u' modifier ignored since `D' is the default (see `U') gcc -shared -o libminimap.so.0 kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -fPIC -Wl,-soname,libminimap.so.0 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wl,-z,relro -Wl,-z,now main.o -o minimap -L. -lminimap -lm -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/minimap-0.2' ln -s libminimap.so.* libminimap.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "*.h" /usr/include/minimap \ libminimap.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libminimap-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libminimap0/usr/lib/x86_64-linux-gnu mv ./libminimap.a debian/libminimap-dev/usr/lib/x86_64-linux-gnu mv ./libminimap.la debian/libminimap-dev/usr/lib/x86_64-linux-gnu || true mv ./libminimap.so debian/libminimap-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/minimap-0.2/libminimap.so.0 debian/libminimap0/usr/lib/x86_64-linux-gnu PKGDEV=libminimap-dev PKGSHL=libminimap0 install -d -m 755 debian/libminimap-dev//usr/include/minimap mv *.h debian/libminimap-dev//usr/include/minimap mv: cannot stat './libminimap.la': No such file or directory test ! -e debian/bseq.h || mv debian/*.h /build/reproducible-path/minimap-0.2 make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libminimap-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libminimap-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libminimap-dev' in '../libminimap-dev_0.2-8_amd64.deb'. dpkg-deb: building package 'libminimap0-dbgsym' in '../libminimap0-dbgsym_0.2-8_amd64.deb'. dpkg-deb: building package 'minimap' in '../minimap_0.2-8_amd64.deb'. dpkg-deb: building package 'libminimap0' in '../libminimap0_0.2-8_amd64.deb'. dpkg-deb: building package 'minimap-dbgsym' in '../minimap-dbgsym_0.2-8_amd64.deb'. dpkg-genbuildinfo --build=binary -O../minimap_0.2-8_amd64.buildinfo dpkg-genchanges --build=binary -O../minimap_0.2-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1559226 and its subdirectories I: Current time: Fri Apr 25 16:10:57 +14 2025 I: pbuilder-time-stamp: 1745547057 + false + set +x Fri Apr 25 02:10:57 UTC 2025 I: Signing ./b2/minimap_0.2-8_amd64.buildinfo as minimap_0.2-8_amd64.buildinfo.asc Fri Apr 25 02:10:57 UTC 2025 I: Signed ./b2/minimap_0.2-8_amd64.buildinfo as ./b2/minimap_0.2-8_amd64.buildinfo.asc Fri Apr 25 02:10:57 UTC 2025 - build #2 for minimap/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Fri Apr 25 02:10:57 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ITNa4WCX, removing. /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv: total 44 drwxr-xr-x 2 jenkins jenkins 4096 Apr 25 02:09 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 25 02:10 b2 -rw-r--r-- 1 jenkins jenkins 2082 Dec 12 2023 minimap_0.2-8.dsc -rw------- 1 jenkins jenkins 29067 Apr 25 02:09 rbuildlog.tS65UW1 /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b1: total 344 -rw-r--r-- 1 jenkins jenkins 25606 Apr 25 02:09 build.log -rw-r--r-- 1 jenkins jenkins 33308 Apr 25 02:09 libminimap-dev_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 51044 Apr 25 02:09 libminimap0-dbgsym_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 22392 Apr 25 02:09 libminimap0_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 56460 Apr 25 02:09 minimap-dbgsym_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 78812 Apr 25 02:09 minimap_0.2-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2082 Apr 25 02:09 minimap_0.2-8.dsc -rw-r--r-- 1 jenkins jenkins 6102 Apr 25 02:09 minimap_0.2-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6984 Apr 25 02:09 minimap_0.2-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2381 Apr 25 02:09 minimap_0.2-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 26532 Apr 25 02:09 minimap_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1254 Apr 25 02:09 minimap_0.2-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b2: total 332 -rw-r--r-- 1 jenkins jenkins 27527 Apr 25 02:10 build.log -rw-r--r-- 1 jenkins jenkins 33308 Apr 25 02:10 libminimap-dev_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 51044 Apr 25 02:10 libminimap0-dbgsym_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 22392 Apr 25 02:10 libminimap0_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 56460 Apr 25 02:10 minimap-dbgsym_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 78812 Apr 25 02:10 minimap_0.2-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2082 Apr 25 02:10 minimap_0.2-8.dsc -rw-r--r-- 1 jenkins jenkins 6091 Apr 25 02:10 minimap_0.2-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6973 Apr 25 02:10 minimap_0.2-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2381 Apr 25 02:10 minimap_0.2-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 26532 Apr 25 02:10 minimap_0.2-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1254 Apr 25 02:10 minimap_0.2-8_source.changes Fri Apr 25 02:10:58 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Fri Apr 25 02:10:58 UTC 2025 I: minimap_0.2-8_amd64.changes: Format: 1.8 Date: Tue, 12 Dec 2023 15:57:39 +0100 Source: minimap Binary: libminimap-dev libminimap0 libminimap0-dbgsym minimap minimap-dbgsym Architecture: amd64 Version: 0.2-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: libminimap-dev - development headers for libminimap libminimap0 - library for approximate mapping of long biosequences minimap - tool for approximate mapping of long biosequences such as DNA rea Closes: 1049859 Changes: minimap (0.2-8) unstable; urgency=medium . * Enable building twice in a row. Closes: #1049859 * Bump Standards-Version. * Bump d/copyright date. Checksums-Sha1: 6ecc8c8a0acce255d21ddf77172b925074adc4f8 33308 libminimap-dev_0.2-8_amd64.deb 7a57a00d3beda8563c317f60f2161e5b43f0f055 51044 libminimap0-dbgsym_0.2-8_amd64.deb 97de3dcb1549dcf7951963f2496086a65f94d642 22392 libminimap0_0.2-8_amd64.deb 737ad1be95be8a473f13c4f6e242a25a89e8a216 56460 minimap-dbgsym_0.2-8_amd64.deb 2705feb939ebdd9a7dea31a4128598900f5b3f14 6102 minimap_0.2-8_amd64.buildinfo 435c679851d865b522d4d8cf1051e563bcd3d9bf 26532 minimap_0.2-8_amd64.deb Checksums-Sha256: a5442cf14cc416628e2f9e22d2ae654ddd1769e0a1d94bcbceec2e400b6e4b0c 33308 libminimap-dev_0.2-8_amd64.deb 0b89e010888dc8121cbdb6996d26d2135b21428302ec3381383e1f3c997b6790 51044 libminimap0-dbgsym_0.2-8_amd64.deb 08a5e62a17451050269f5fce694dc1f898f73503499d4bd886f5d8f24e14c8ec 22392 libminimap0_0.2-8_amd64.deb 20d008efcb003c694daec0ae150800b340f4118cebcfb1d84db3ec93f9db74e7 56460 minimap-dbgsym_0.2-8_amd64.deb 3c4875e8289c3950935e1054149dae616fcbcb562dac04cd2cbd34e3025debc5 6102 minimap_0.2-8_amd64.buildinfo 0cc45ad520e8c4dfba8867df0c1d3590165caa8c61026a3b818d7bf7928a252e 26532 minimap_0.2-8_amd64.deb Files: 36595c9ccfa47701a0cee14e64b423ba 33308 libdevel optional libminimap-dev_0.2-8_amd64.deb 5b422dd555ddf4b78904cdf7047a5a52 51044 debug optional libminimap0-dbgsym_0.2-8_amd64.deb 33101b889de8767c19981254dc15157a 22392 libs optional libminimap0_0.2-8_amd64.deb ed85d8db2c37d99d06fe047e0c092978 56460 debug optional minimap-dbgsym_0.2-8_amd64.deb ac75bca031f741d97cae5c577a92fba3 6102 science optional minimap_0.2-8_amd64.buildinfo 2582a7ee7c2bdd554986aa1730f0730d 26532 science optional minimap_0.2-8_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/minimap_0.2-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/minimap_0.2-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/minimap_0.2-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/minimap_0.2-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/minimap_0.2-8_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/minimap_0.2-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-25 02:09:05.941489427 +0000 +++ b2/build.log 2025-04-25 02:10:58.023128991 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 27 20:31:38 -12 2026 -I: pbuilder-time-stamp: 1779957098 +I: Current time: Fri Apr 25 16:09:09 +14 2025 +I: pbuilder-time-stamp: 1745546949 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying ensure_64bit_value I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2473661/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 25 02:09 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='90cc850954b94141b3226867b31a94ee' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2473661' - PS1='# ' - PS2='> ' + INVOCATION_ID=f7cd55e517664fc0b805fba4a7f549d6 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1559226 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/pbuilderrc_fA8a --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b1 --logfile b1/build.log minimap_0.2-8.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/pbuilderrc_4DEn --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b2 --logfile b2/build.log minimap_0.2-8.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2473661/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -142,7 +174,7 @@ Get: 29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 12.1 MB in 0s (105 MB/s) +Fetched 12.1 MB in 4s (2932 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) @@ -281,7 +313,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/minimap-0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minimap_0.2-8_source.changes +I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/minimap-0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../minimap_0.2-8_source.changes dpkg-buildpackage: info: source package minimap dpkg-buildpackage: info: source version 0.2-8 dpkg-buildpackage: info: source distribution unstable @@ -293,7 +329,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/minimap-0.2' dh_auto_clean - make -j42 clean + make -j40 clean make[2]: Entering directory '/build/reproducible-path/minimap-0.2' rm -fr gmon.out *.o a.out minimap sdust minimap-lite *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' @@ -309,7 +345,7 @@ make[1]: Entering directory '/build/reproducible-path/minimap-0.2' cp /build/reproducible-path/minimap-0.2/*.h debian/ dh_auto_build - make -j42 "INSTALL=install --strip-program=true" + make -j40 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/minimap-0.2' gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. main.c -o main.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. kthread.c -o kthread.o @@ -345,8 +381,8 @@ 345 | fread(x, 8, 2, fp); | ^~~~~~~~~~~~~~~~~~ ar -csru libminimap.a kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -gcc -shared -o libminimap.so.0 kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -fPIC -Wl,-soname,libminimap.so.0 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now ar: `u' modifier ignored since `D' is the default (see `U') +gcc -shared -o libminimap.so.0 kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -fPIC -Wl,-soname,libminimap.so.0 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minimap-0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wl,-z,relro -Wl,-z,now main.o -o minimap -L. -lminimap -lm -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/minimap-0.2' make[1]: Leaving directory '/build/reproducible-path/minimap-0.2' @@ -397,11 +433,11 @@ dpkg-gencontrol: warning: package libminimap-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb +dpkg-deb: building package 'libminimap-dev' in '../libminimap-dev_0.2-8_amd64.deb'. +dpkg-deb: building package 'libminimap0-dbgsym' in '../libminimap0-dbgsym_0.2-8_amd64.deb'. dpkg-deb: building package 'minimap' in '../minimap_0.2-8_amd64.deb'. -dpkg-deb: building package 'minimap-dbgsym' in '../minimap-dbgsym_0.2-8_amd64.deb'. dpkg-deb: building package 'libminimap0' in '../libminimap0_0.2-8_amd64.deb'. -dpkg-deb: building package 'libminimap0-dbgsym' in '../libminimap0-dbgsym_0.2-8_amd64.deb'. -dpkg-deb: building package 'libminimap-dev' in '../libminimap-dev_0.2-8_amd64.deb'. +dpkg-deb: building package 'minimap-dbgsym' in '../minimap-dbgsym_0.2-8_amd64.deb'. dpkg-genbuildinfo --build=binary -O../minimap_0.2-8_amd64.buildinfo dpkg-genchanges --build=binary -O../minimap_0.2-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -409,12 +445,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1559226/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2473661 and its subdirectories -I: Current time: Wed May 27 20:32:03 -12 2026 -I: pbuilder-time-stamp: 1779957123 +I: removing directory /srv/workspace/pbuilder/1559226 and its subdirectories +I: Current time: Fri Apr 25 16:10:57 +14 2025 +I: pbuilder-time-stamp: 1745547057 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/minimap_0.2-8.diff: 69.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/minimap_0.2-8.diff.gz b2/build.log: 76.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 77.5% -- replaced with stdout Fri Apr 25 02:10:59 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_minimap_unstable_amd64_1745547059 + touch /var/log/reproducible-builds/diffoscope_stamp_minimap_unstable_amd64_1745547059 + RESULT=0 + systemd-run '--description=diffoscope on minimap/0.2-8 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_22-39705 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv --run-session -c jenkins-reproducible-unstable-diffoscope-ccd58f29-7082-4710-800c-f384c6f14cb5 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/dbd-tmp-hvI9jMl ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/minimap_0.2-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/minimap_0.2-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/minimap_0.2-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b1/minimap_0.2-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b2/minimap_0.2-8_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_22-39705.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/minimap_0.2-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/minimap_0.2-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/minimap_0.2-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b1/minimap_0.2-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.aoZaFeAv/b2/minimap_0.2-8_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.006s) 0.006s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 431ms CPU time consumed: 426ms _ _ _ __ ___ (_)_ __ (_)_ __ ___ __ _ _ __ | '_ ` _ \| | '_ \| | '_ ` _ \ / _` | '_ \ | | | | | | | | | | | | | | | | (_| | |_) | |_| |_| |_|_|_| |_|_|_| |_| |_|\__,_| .__/ |_| Fri Apr 25 02:11:15 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 25 02:11:15 UTC 2025 I: minimap from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-25 02:11:16] INFO: Starting at 2025-04-25 02:11:16.089735 [2025-04-25 02:11:16] INFO: Generating the pages of 1 package(s) [2025-04-25 02:11:16] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/minimap didn't produce a buildlog, even though it has been built. [2025-04-25 02:11:16] INFO: Finished at 2025-04-25 02:11:16.826463, took: 0:00:00.736735 Fri Apr 25 02:11:16 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/minimap.html Fri Apr 25 02:11:16 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Apr 25 02:11:16 UTC 2025 I: Submitting 8.0K b1/minimap_0.2-8_amd64.buildinfo.asc Fri Apr 25 02:11:46 UTC 2025 E: Could not submit buildinfo from b1 to http://buildinfo.debian.net/api/submit Fri Apr 25 02:11:47 UTC 2025 I: Submitting 8.0K b2/minimap_0.2-8_amd64.buildinfo.asc https://buildinfo.debian.net/59e68c5624b99a8e8253c741afbb2fac18ab4a11/minimap_0.2-8_amd64 Fri Apr 25 02:12:12 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 25 02:12:12 UTC 2025 I: Done submitting .buildinfo files. Fri Apr 25 02:12:12 UTC 2025 I: Removing signed minimap_0.2-8_amd64.buildinfo.asc files: removed './b1/minimap_0.2-8_amd64.buildinfo.asc' removed './b2/minimap_0.2-8_amd64.buildinfo.asc' 1745547132 amd64 unstable minimap Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/minimap_0.2-8.rbuild.log: 73.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/minimap_0.2-8.rbuild.log.gz [2025-04-25 02:12:13] INFO: Starting at 2025-04-25 02:12:13.196457 [2025-04-25 02:12:13] INFO: Generating the pages of 1 package(s) [2025-04-25 02:12:13] INFO: Finished at 2025-04-25 02:12:13.704877, took: 0:00:00.508427 All cleanup done. Fri Apr 25 02:12:13 UTC 2025 - total duration: 0h 2m 49s. Fri Apr 25 02:12:13 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-cZhlb7jm, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 47.180s CPU time consumed: 8.018s