Running as unit: rb-build-amd64_22-53951.service ==================================================================================== Thu Aug 7 11:15:25 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_22) on jenkins, called using "ionos5-amd64 ionos11-amd64" as arguments. Thu Aug 7 11:15:25 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-SKudfLUz" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Aug 7 11:15:25 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Aug 7 11:15:25 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-tfH6TZ' Thu Aug 7 11:15:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Aug 7 11:15:26 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-rv6Few' ok, let's check if lambda-align2 is building anywhere yet… ok, lambda-align2 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of lambda-align2 in unstable on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Thu Aug 7 11:15:47 UTC 2025 I: starting to build lambda-align2/unstable/amd64 on jenkins on '2025-08-07 11:15' Thu Aug 7 11:15:47 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_22/53951/console.log 1754565347 amd64 unstable lambda-align2 Thu Aug 7 11:15:47 UTC 2025 I: Downloading source for unstable/lambda-align2=2.0.1-3 --2025-08-07 11:15:47-- http://deb.debian.org/debian/pool/main/l/lambda-align2/lambda-align2_2.0.1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2178 (2.1K) [text/prs.lines.tag] Saving to: ‘lambda-align2_2.0.1-3.dsc’ 0K .. 100% 258M=0s 2025-08-07 11:15:47 (258 MB/s) - ‘lambda-align2_2.0.1-3.dsc’ saved [2178/2178] --2025-08-07 11:15:47-- http://deb.debian.org/debian/pool/main/l/lambda-align2/lambda-align2_2.0.1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2178 (2.1K) [text/prs.lines.tag] Saving to: ‘lambda-align2_2.0.1-3.dsc’ 0K .. 100% 258M=0s 2025-08-07 11:15:47 (258 MB/s) - ‘lambda-align2_2.0.1-3.dsc’ saved [2178/2178] Thu Aug 7 11:15:47 UTC 2025 I: lambda-align2_2.0.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lambda-align2 Binary: lambda-align2 Architecture: any Version: 2.0.1-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Sascha Steinbiss Homepage: https://seqan.github.io/lambda Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/lambda-align2 Vcs-Git: https://salsa.debian.org/med-team/lambda-align2.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, coreutils, diffutils, gzip, ncbi-blast+, openssl Build-Depends: debhelper-compat (= 13), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl Package-List: lambda-align2 deb science optional arch=any Checksums-Sha1: d0f7e7958ea59fe15ccd64d913671c0d1a46327a 345677 lambda-align2_2.0.1.orig.tar.gz 11d2fe9fc6ae3eee877c7779f5092d1f598216ea 17604 lambda-align2_2.0.1-3.debian.tar.xz Checksums-Sha256: 35abec91722309421884a8e300fc1d3ee011a1b56eb0d0bb024e585a5b617daa 345677 lambda-align2_2.0.1.orig.tar.gz 6f5b3945f74a3dea091c094f8de0ab800eef9276adead57552d563ead18cb1b7 17604 lambda-align2_2.0.1-3.debian.tar.xz Files: fd5d462f5cef118208c233c540588576 345677 lambda-align2_2.0.1.orig.tar.gz 80ecce87683b854421cd12779c7e614e 17604 lambda-align2_2.0.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdIk1UACgkQPCZ2P2xn 5uKxUg/9Ebrk98vNNPVVO/XH8ycs269A+d/bdR6ehBmaZj1tr2UKnu56uKeHoUUP NuE/kdI/O31CD9uUGvOa+za0Ghd/9CARsIIP4ISi10oiL97idyL4cZDZHwCnZdtC nZfRL8bR7mxuvDBpdEcqosTTu3cg88nNQwGuL2pglP2zQqX4VNQ9FvnBTnz5Rxia sqwBkF1ZzsyjiZqXDGwC93Hiymr6yccTKoihtkWIlfvXfLw3F8PFrs5rLIEJI0fY 6Sx6Rqvg32Ke8TJjS8sBa1jbPDja76Uaxq0jC0TNe+Q8zhuIrAwlnIxmVUAQ/IMS nZqMPvWJkb7v41Y3DKqLLzwTYoBx98q+jvMLV9srVn7Dz6Gpnp4cg+p+qbaZYMp9 UDmGNQHT88cT91LFbvN2bnjMAfUgr3kedX7SbPjBgKef8lOXgPrOn8++UY0ecoNr mUwGsEEcpQ3Wc9GlitNCkT+KB7u15LbdcAAZi4z3f50uQCd2RmxbOpm585ejQyb0 XCJa75MX7FOhMQlXdUKX6O0jac8eoX5N5sV1SuujrrYqPeHazdAfs03MebpOqrJy 35IH6I7Q1fymN93TJS1AjXw8j/V9k+e3b9sIdfDze33TCVvpqHDJoMEx8YNVXmbZ 3bUV79W2ft+7vPVQF0rM4dU67qEquLrQmHjRaDqGyP1LLHEEejM= =vjLU -----END PGP SIGNATURE----- Thu Aug 7 11:15:47 UTC 2025 I: Checking whether the package is not for us Thu Aug 7 11:15:47 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu Aug 7 11:15:47 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu Aug 7 11:15:47 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Aug 7 11:15:47 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-RYBRI8' ==================================================================================== Wed Sep 9 17:38:48 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 lambda-align2 unstable /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL 2.0.1-3" as arguments. Wed Sep 9 17:38:48 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-WmJtZgnQ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Sep 9 17:38:48 UTC 2026 I: Downloading source for unstable/lambda-align2=2.0.1-3 Reading package lists... NOTICE: 'lambda-align2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align2.git Please use: git clone https://salsa.debian.org/med-team/lambda-align2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 365 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (dsc) [2178 B] Get:2 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (tar) [346 kB] Get:3 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (diff) [17.6 kB] Fetched 365 kB in 0s (12.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'lambda-align2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align2.git Please use: git clone https://salsa.debian.org/med-team/lambda-align2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 365 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (dsc) [2178 B] Get:2 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (tar) [346 kB] Get:3 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (diff) [17.6 kB] Fetched 365 kB in 0s (12.9 MB/s) Download complete and in download only mode ============================================================================= Building lambda-align2 in unstable on amd64 on ionos5-amd64 now. Date: Wed Sep 9 17:38:48 UTC 2026 Date UTC: Wed Sep 9 17:38:48 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 9 05:38:49 -12 2026 I: pbuilder-time-stamp: 1788975529 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align2_2.0.1-3.dsc] I: copying [./lambda-align2_2.0.1.orig.tar.gz] I: copying [./lambda-align2_2.0.1-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lambda-align2_2.0.1-3.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align2 in lambda-align2-2.0.1 dpkg-source: info: unpacking lambda-align2_2.0.1.orig.tar.gz dpkg-source: info: unpacking lambda-align2_2.0.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_tests dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0006-Fix-binaries-not-being-installed-on-non-amd64-archs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/565511/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='55f5b1e5e8ef4ab1a4b1ed43107abe29' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='565511' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/pbuilderrc_mgNw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b1 --logfile b1/build.log lambda-align2_2.0.1-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/565511/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 35.1 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 35.1 MB in 4s (9343 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/lambda-align2-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align2_2.0.1-3_source.changes dpkg-buildpackage: info: source package lambda-align2 dpkg-buildpackage: info: source version 2.0.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' if ls tests/*~ 1> /dev/null 2>&1; then \ for backup in tests/*~; do mv ${backup} ${backup%\~}; done; \ fi dh_auto_clean make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/lambda-align2.substvars debian/files rm -fr -- debian/lambda-align2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' dh_auto_configure -- \ -DLAMBDA_NATIVE_BUILD=OFF \ -DLAMBDA_MMAPPED_DB=OFF \ -DCMAKE_BUILD_TYPE=Release \ "-DLAMBDA_MULTIOPT_BUILD=1" cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release -DLAMBDA_MULTIOPT_BUILD=1 .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): src/CMakeLists.txt:34 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- These dependencies were found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.4.0 -- The requirements were met. Build configuration -- LAMBDA version is: 2.0.1 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF LAMBDA_MMAPPED_DB OFF LAMBDA_NATIVE_BUILD OFF LAMBDA_MULTIOPT_BUILD 1 LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align2-2.0.1/build make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_auto_build -O--builddirectory=build cd build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles /build/reproducible-path/lambda-align2-2.0.1/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/depend make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/lambda2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/lambda2-sse4.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 22%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o [ 22%] Building CXX object src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -mmmx -msse -msse2 -msse3 -mssse3 -msse4 -mpopcnt -MD -MT src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -MF CMakeFiles/lambda2-sse4.dir/lambda.cpp.o.d -o CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -MD -MT src/CMakeFiles/lambda2.dir/lambda.cpp.o -MF CMakeFiles/lambda2.dir/lambda.cpp.o.d -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:32, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:22: /build/reproducible-path/lambda-align2-2.0.1/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 219 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:32, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:22: /build/reproducible-path/lambda-align2-2.0.1/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 219 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:39: /build/reproducible-path/lambda-align2-2.0.1/src/search_algo.hpp:75:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:39: /build/reproducible-path/lambda-align2-2.0.1/src/search_algo.hpp:75:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:38, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:23: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:38, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:23: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:36: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 33 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:36: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 33 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 33%] Linking CXX executable ../bin/lambda2 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 44%] Linking CXX executable ../bin/lambda2-sse4 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2-sse4.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:345:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2.dir/link.d CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 44%] Built target lambda2 make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/manual.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 88%] Generating lambda2.1 [ 88%] Generating lambda2-searchp.1 [ 88%] Generating lambda2-searchn.1 [ 88%] Generating lambda2-mkindexn.1 [100%] Generating lambda2-mkindexp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 --export-help=man > lambda2.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchn --export-help=man > lambda2-searchn.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1 make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [100%] Built target manual In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:345:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2-sse4.dir/link.d "CMakeFiles/lambda2-sse4.dir/lambda.cpp.o" -o ../bin/lambda2-sse4 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [100%] Built target lambda2-sse4 make[2]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' #for md5 in debian/*.md5sums; do gzip --keep ${md5}; done #cp --backup debian/*md5sums.gz tests/ #cd build/tests && ctest . -I 1,10 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build rm -f -- debian/lambda-align2.substvars rm -fr -- debian/.debhelper/generated/lambda-align2/ debian/lambda-align2/ debian/tmp/ dh_auto_install --destdir=debian/lambda-align2/ -O--builddirectory=build install -m0755 -d /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 cd build && make -j42 install DESTDIR=/build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/libexec/lambda2 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/libexec/lambda2-sse4 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/bin/lambda2 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-AGPL3.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/README.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_installdocs -O--builddirectory=build install -m0755 -d debian/lambda-align2/usr/share/doc/lambda-align2 install -p -m0644 debian/copyright debian/lambda-align2/usr/share/doc/lambda-align2/copyright dh_installchangelogs -O--builddirectory=build install -m0755 -d debian/lambda-align2/usr/share/doc/lambda-align2 install -p -m0644 debian/.debhelper/generated/lambda-align2/dh_installchangelogs.dch.trimmed debian/lambda-align2/usr/share/doc/lambda-align2/changelog.Debian rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' sed -i -e 's@\(defaults to working directory\.\).*@\1@g' ./debian/lambda-align2/usr/share/man/man1/*.1 sed -i -e 's@\(number of threads to run concurrently\).*@\1. Default: autodetected.@g' ./debian/lambda-align2/usr/share/man/man1/*.1 sed -i 's/LAMBDA2 MKINDEXN/LAMBDA2_MKINDEXN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 sed -i 's/^lambda2 mkindexn /lambda2_mkindexn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 sed -i 's/LAMBDA2 MKINDEXP/LAMBDA2_MKINDEXP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 sed -i 's/^lambda2 mkindexp /lambda2_mkindexp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 sed -i 's/LAMBDA2 SEARCHN/LAMBDA2_SEARCHN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 sed -i 's/^lambda2 searchn /lambda2_searchn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 sed -i 's/LAMBDA2 SEARCHP/LAMBDA2_SEARCHP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 sed -i 's/^lambda2 searchp /lambda2_searchp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build cd debian/lambda-align2 chmod a-x usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1 gzip -9nf usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1 cd '/build/reproducible-path/lambda-align2-2.0.1' dh_fixperms -O--builddirectory=build find debian/lambda-align2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/lambda-align2/usr/share/doc -type f -a -true -a ! -regex 'debian/lambda-align2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/lambda-align2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2/usr/bin debian/lambda-align2/usr/libexec -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--builddirectory=build rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' # pass make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_strip -a -O--builddirectory=build strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2 strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2-sse4 dh_makeshlibs -a -O--builddirectory=build rm -f debian/lambda-align2/DEBIAN/shlibs dh_shlibdeps -a -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN dpkg-shlibdeps -Tdebian/lambda-align2.substvars debian/lambda-align2/usr/libexec/lambda2 debian/lambda-align2/usr/libexec/lambda2-sse4 dh_installdeb -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN dh_gencontrol -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN echo misc:Depends= >> debian/lambda-align2.substvars echo misc:Pre-Depends= >> debian/lambda-align2.substvars dpkg-gencontrol -plambda-align2 -ldebian/changelog -Tdebian/lambda-align2.substvars -cdebian/control -Pdebian/lambda-align2 chmod 0644 -- debian/lambda-align2/DEBIAN/control dh_md5sums -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN cd debian/lambda-align2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lambda-align2/DEBIAN/md5sums dh_builddeb -O--builddirectory=build dpkg-deb --root-owner-group --build debian/lambda-align2 .. dpkg-deb: building package 'lambda-align2' in '../lambda-align2_2.0.1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align2_2.0.1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../lambda-align2_2.0.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/565511 and its subdirectories I: Current time: Wed Sep 9 05:42:20 -12 2026 I: pbuilder-time-stamp: 1788975740 Wed Sep 9 17:42:20 UTC 2026 I: Signing ./b1/lambda-align2_2.0.1-3_amd64.buildinfo as lambda-align2_2.0.1-3_amd64.buildinfo.asc Wed Sep 9 17:42:20 UTC 2026 I: Signed ./b1/lambda-align2_2.0.1-3_amd64.buildinfo as ./b1/lambda-align2_2.0.1-3_amd64.buildinfo.asc Wed Sep 9 17:42:20 UTC 2026 - build #1 for lambda-align2/unstable/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Wed Sep 9 17:42:20 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-WmJtZgnQ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 11:19 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 11:15 b2 -rw-r--r-- 1 jenkins jenkins 2178 Nov 28 2024 lambda-align2_2.0.1-3.dsc -rw------- 1 jenkins jenkins 3320 Aug 7 11:15 rbuildlog.ziIkmYH /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b1: total 2160 -rw-r--r-- 1 jenkins jenkins 139438 Aug 7 11:19 build.log -rw-r--r-- 1 jenkins jenkins 17604 Aug 7 11:19 lambda-align2_2.0.1-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2178 Aug 7 11:19 lambda-align2_2.0.1-3.dsc -rw-r--r-- 1 jenkins jenkins 5757 Aug 7 11:19 lambda-align2_2.0.1-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6639 Aug 7 11:19 lambda-align2_2.0.1-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1218 Aug 7 11:19 lambda-align2_2.0.1-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 2017040 Aug 7 11:19 lambda-align2_2.0.1-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1378 Aug 7 11:19 lambda-align2_2.0.1-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b2: total 0 Thu Aug 7 11:19:21 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 9 05:38:49 -12 2026 I: pbuilder-time-stamp: 1788975529 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align2_2.0.1-3.dsc] I: copying [./lambda-align2_2.0.1.orig.tar.gz] I: copying [./lambda-align2_2.0.1-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lambda-align2_2.0.1-3.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align2 in lambda-align2-2.0.1 dpkg-source: info: unpacking lambda-align2_2.0.1.orig.tar.gz dpkg-source: info: unpacking lambda-align2_2.0.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_tests dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0006-Fix-binaries-not-being-installed-on-non-amd64-archs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/565511/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='55f5b1e5e8ef4ab1a4b1ed43107abe29' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='565511' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/pbuilderrc_mgNw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b1 --logfile b1/build.log lambda-align2_2.0.1-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/565511/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 35.1 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 35.1 MB in 4s (9343 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_3.31.6-2_all.deb ... Unpacking cmake-data (3.31.6-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-4_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../28-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../29-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../32-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../33-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../34-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../35-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../36-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../37-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../38-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../39-libgnutls30t64_3.8.9-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../40-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../41-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../42-libcurl4t64_8.14.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.14.1-2) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../43-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../44-librhash1_1.4.6-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../45-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../46-cmake_3.31.6-2_amd64.deb ... Unpacking cmake (3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../47-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../48-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../49-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../50-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../51-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../52-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../53-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../54-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../55-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../56-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../57-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../58-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../59-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../60-libseqan2-dev_2.4.0+dfsg-16_all.deb ... Unpacking libseqan2-dev (2.4.0+dfsg-16) ... Selecting previously unselected package openssl. Preparing to unpack .../61-openssl_3.5.1-1_amd64.deb ... Unpacking openssl (3.5.1-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../62-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libseqan2-dev (2.4.0+dfsg-16) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.5.1-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libarchive13t64:amd64 (3.7.4-4) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:amd64 (8.14.1-2) ... Setting up debhelper (13.24.2) ... Setting up cmake (3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/lambda-align2-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align2_2.0.1-3_source.changes dpkg-buildpackage: info: source package lambda-align2 dpkg-buildpackage: info: source version 2.0.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' if ls tests/*~ 1> /dev/null 2>&1; then \ for backup in tests/*~; do mv ${backup} ${backup%\~}; done; \ fi dh_auto_clean make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/lambda-align2.substvars debian/files rm -fr -- debian/lambda-align2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' dh_auto_configure -- \ -DLAMBDA_NATIVE_BUILD=OFF \ -DLAMBDA_MMAPPED_DB=OFF \ -DCMAKE_BUILD_TYPE=Release \ "-DLAMBDA_MULTIOPT_BUILD=1" cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release -DLAMBDA_MULTIOPT_BUILD=1 .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): src/CMakeLists.txt:34 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- These dependencies were found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.4.0 -- The requirements were met. Build configuration -- LAMBDA version is: 2.0.1 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF LAMBDA_MMAPPED_DB OFF LAMBDA_NATIVE_BUILD OFF LAMBDA_MULTIOPT_BUILD 1 LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align2-2.0.1/build make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_auto_build -O--builddirectory=build cd build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles /build/reproducible-path/lambda-align2-2.0.1/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/depend make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/lambda2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/lambda2-sse4.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 22%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o [ 22%] Building CXX object src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -mmmx -msse -msse2 -msse3 -mssse3 -msse4 -mpopcnt -MD -MT src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -MF CMakeFiles/lambda2-sse4.dir/lambda.cpp.o.d -o CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -MD -MT src/CMakeFiles/lambda2.dir/lambda.cpp.o -MF CMakeFiles/lambda2.dir/lambda.cpp.o.d -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:32, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:22: /build/reproducible-path/lambda-align2-2.0.1/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 219 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:32, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:22: /build/reproducible-path/lambda-align2-2.0.1/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 219 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:39: /build/reproducible-path/lambda-align2-2.0.1/src/search_algo.hpp:75:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:39: /build/reproducible-path/lambda-align2-2.0.1/src/search_algo.hpp:75:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:38, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:23: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:38, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:23: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:36: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 33 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:36: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 33 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 33%] Linking CXX executable ../bin/lambda2 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 44%] Linking CXX executable ../bin/lambda2-sse4 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2-sse4.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:345:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2.dir/link.d CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 44%] Built target lambda2 make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/manual.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 88%] Generating lambda2.1 [ 88%] Generating lambda2-searchp.1 [ 88%] Generating lambda2-searchn.1 [ 88%] Generating lambda2-mkindexn.1 [100%] Generating lambda2-mkindexp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 --export-help=man > lambda2.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchn --export-help=man > lambda2-searchn.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1 make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [100%] Built target manual In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:345:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2-sse4.dir/link.d "CMakeFiles/lambda2-sse4.dir/lambda.cpp.o" -o ../bin/lambda2-sse4 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [100%] Built target lambda2-sse4 make[2]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' #for md5 in debian/*.md5sums; do gzip --keep ${md5}; done #cp --backup debian/*md5sums.gz tests/ #cd build/tests && ctest . -I 1,10 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build rm -f -- debian/lambda-align2.substvars rm -fr -- debian/.debhelper/generated/lambda-align2/ debian/lambda-align2/ debian/tmp/ dh_auto_install --destdir=debian/lambda-align2/ -O--builddirectory=build install -m0755 -d /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 cd build && make -j42 install DESTDIR=/build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/libexec/lambda2 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/libexec/lambda2-sse4 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/bin/lambda2 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-AGPL3.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/README.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_installdocs -O--builddirectory=build install -m0755 -d debian/lambda-align2/usr/share/doc/lambda-align2 install -p -m0644 debian/copyright debian/lambda-align2/usr/share/doc/lambda-align2/copyright dh_installchangelogs -O--builddirectory=build install -m0755 -d debian/lambda-align2/usr/share/doc/lambda-align2 install -p -m0644 debian/.debhelper/generated/lambda-align2/dh_installchangelogs.dch.trimmed debian/lambda-align2/usr/share/doc/lambda-align2/changelog.Debian rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' sed -i -e 's@\(defaults to working directory\.\).*@\1@g' ./debian/lambda-align2/usr/share/man/man1/*.1 sed -i -e 's@\(number of threads to run concurrently\).*@\1. Default: autodetected.@g' ./debian/lambda-align2/usr/share/man/man1/*.1 sed -i 's/LAMBDA2 MKINDEXN/LAMBDA2_MKINDEXN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 sed -i 's/^lambda2 mkindexn /lambda2_mkindexn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 sed -i 's/LAMBDA2 MKINDEXP/LAMBDA2_MKINDEXP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 sed -i 's/^lambda2 mkindexp /lambda2_mkindexp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 sed -i 's/LAMBDA2 SEARCHN/LAMBDA2_SEARCHN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 sed -i 's/^lambda2 searchn /lambda2_searchn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 sed -i 's/LAMBDA2 SEARCHP/LAMBDA2_SEARCHP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 sed -i 's/^lambda2 searchp /lambda2_searchp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build cd debian/lambda-align2 chmod a-x usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1 gzip -9nf usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1 cd '/build/reproducible-path/lambda-align2-2.0.1' dh_fixperms -O--builddirectory=build find debian/lambda-align2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/lambda-align2/usr/share/doc -type f -a -true -a ! -regex 'debian/lambda-align2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/lambda-align2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2/usr/bin debian/lambda-align2/usr/libexec -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--builddirectory=build rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' # pass make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_strip -a -O--builddirectory=build strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2 strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2-sse4 dh_makeshlibs -a -O--builddirectory=build rm -f debian/lambda-align2/DEBIAN/shlibs dh_shlibdeps -a -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN dpkg-shlibdeps -Tdebian/lambda-align2.substvars debian/lambda-align2/usr/libexec/lambda2 debian/lambda-align2/usr/libexec/lambda2-sse4 dh_installdeb -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN dh_gencontrol -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN echo misc:Depends= >> debian/lambda-align2.substvars echo misc:Pre-Depends= >> debian/lambda-align2.substvars dpkg-gencontrol -plambda-align2 -ldebian/changelog -Tdebian/lambda-align2.substvars -cdebian/control -Pdebian/lambda-align2 chmod 0644 -- debian/lambda-align2/DEBIAN/control dh_md5sums -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN cd debian/lambda-align2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lambda-align2/DEBIAN/md5sums dh_builddeb -O--builddirectory=build dpkg-deb --root-owner-group --build debian/lambda-align2 .. dpkg-deb: building package 'lambda-align2' in '../lambda-align2_2.0.1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align2_2.0.1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../lambda-align2_2.0.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/565511 and its subdirectories I: Current time: Wed Sep 9 05:42:20 -12 2026 I: pbuilder-time-stamp: 1788975740 Thu Aug 7 11:19:22 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Aug 7 11:19:22 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Aug 7 11:19:22 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Aug 7 11:19:22 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-89K15p' ==================================================================================== Thu Aug 7 11:19:23 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 lambda-align2 unstable /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL 2.0.1-3" as arguments. Thu Aug 7 11:19:23 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-0PyHs5zC" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Aug 7 11:19:23 UTC 2025 I: Downloading source for unstable/lambda-align2=2.0.1-3 Reading package lists... NOTICE: 'lambda-align2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align2.git Please use: git clone https://salsa.debian.org/med-team/lambda-align2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 365 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (dsc) [2178 B] Get:2 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (tar) [346 kB] Get:3 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (diff) [17.6 kB] Fetched 365 kB in 0s (15.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'lambda-align2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align2.git Please use: git clone https://salsa.debian.org/med-team/lambda-align2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 365 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (dsc) [2178 B] Get:2 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (tar) [346 kB] Get:3 http://deb.debian.org/debian unstable/main lambda-align2 2.0.1-3 (diff) [17.6 kB] Fetched 365 kB in 0s (15.1 MB/s) Download complete and in download only mode ============================================================================= Re-Building lambda-align2 in unstable on amd64 on ionos11-amd64 now. Date: Thu Aug 7 11:19:23 UTC 2025 Date UTC: Thu Aug 7 11:19:23 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/pbuilderrc_xKKt + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' lambda-align2 = debian-installer -o lambda-align2 = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' lambda-align2 = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/pbuilderrc_xKKt --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b2 --logfile b2/build.log lambda-align2_2.0.1-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 8 01:19:23 +14 2025 I: pbuilder-time-stamp: 1754565563 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align2_2.0.1-3.dsc] I: copying [./lambda-align2_2.0.1.orig.tar.gz] I: copying [./lambda-align2_2.0.1-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lambda-align2_2.0.1-3.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align2 in lambda-align2-2.0.1 dpkg-source: info: unpacking lambda-align2_2.0.1.orig.tar.gz dpkg-source: info: unpacking lambda-align2_2.0.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_tests dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0006-Fix-binaries-not-being-installed-on-non-amd64-archs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Aug 7 11:19 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=92e227f77be647f98fb94a97d09b2e7a LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3673349 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/pbuilderrc_xKKt --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b2 --logfile b2/build.log lambda-align2_2.0.1-3.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 35.1 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 35.1 MB in 0s (132 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_3.31.6-2_all.deb ... Unpacking cmake-data (3.31.6-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-4_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../28-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../29-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../32-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../33-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../34-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../35-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../36-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../37-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../38-libtasn1-6_4.20.0-2_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/lambda-align2-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align2_2.0.1-3_source.changes dpkg-buildpackage: info: source package lambda-align2 dpkg-buildpackage: info: source version 2.0.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' if ls tests/*~ 1> /dev/null 2>&1; then \ for backup in tests/*~; do mv ${backup} ${backup%\~}; done; \ fi dh_auto_clean make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/lambda-align2.substvars debian/files rm -fr -- debian/lambda-align2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' dh_auto_configure -- \ -DLAMBDA_NATIVE_BUILD=OFF \ -DLAMBDA_MMAPPED_DB=OFF \ -DCMAKE_BUILD_TYPE=Release \ "-DLAMBDA_MULTIOPT_BUILD=1" cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release -DLAMBDA_MULTIOPT_BUILD=1 .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): src/CMakeLists.txt:34 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- These dependencies were found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.4.0 -- The requirements were met. Build configuration -- LAMBDA version is: 2.0.1 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF LAMBDA_MMAPPED_DB OFF LAMBDA_NATIVE_BUILD OFF LAMBDA_MULTIOPT_BUILD 1 LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align2-2.0.1/build make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_auto_build -O--builddirectory=build cd build && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles /build/reproducible-path/lambda-align2-2.0.1/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/depend make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/lambda2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/lambda2-sse4.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 11%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=40 -s -MD -MT src/CMakeFiles/lambda2.dir/lambda.cpp.o -MF CMakeFiles/lambda2.dir/lambda.cpp.o.d -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp [ 22%] Building CXX object src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=40 -s -mmmx -msse -msse2 -msse3 -mssse3 -msse4 -mpopcnt -MD -MT src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -MF CMakeFiles/lambda2-sse4.dir/lambda.cpp.o.d -o CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:32, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:22: /build/reproducible-path/lambda-align2-2.0.1/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 219 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:32, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:22: /build/reproducible-path/lambda-align2-2.0.1/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 219 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:39: /build/reproducible-path/lambda-align2-2.0.1/src/search_algo.hpp:75:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:39: /build/reproducible-path/lambda-align2-2.0.1/src/search_algo.hpp:75:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:38, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:23: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:38, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:23: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:36: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 33 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:36: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 33 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 33%] Linking CXX executable ../bin/lambda2 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2.dir/link.txt --verbose=1 [ 44%] Linking CXX executable ../bin/lambda2-sse4 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2-sse4.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:345:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=40 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2.dir/link.d CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 44%] Built target lambda2 make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/manual.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 55%] Generating lambda2.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 --export-help=man > lambda2.1 [ 66%] Generating lambda2-searchn.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchn --export-help=man > lambda2-searchn.1 [ 77%] Generating lambda2-searchp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 88%] Generating lambda2-mkindexn.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [100%] Generating lambda2-mkindexp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1 make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [100%] Built target manual In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:345:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=40 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2-sse4.dir/link.d "CMakeFiles/lambda2-sse4.dir/lambda.cpp.o" -o ../bin/lambda2-sse4 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [100%] Built target lambda2-sse4 make[2]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' #for md5 in debian/*.md5sums; do gzip --keep ${md5}; done #cp --backup debian/*md5sums.gz tests/ #cd build/tests && ctest . -I 1,10 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build rm -f -- debian/lambda-align2.substvars rm -fr -- debian/.debhelper/generated/lambda-align2/ debian/lambda-align2/ debian/tmp/ dh_auto_install --destdir=debian/lambda-align2/ -O--builddirectory=build install -m0755 -d /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 cd build && make -j40 install DESTDIR=/build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/libexec/lambda2 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/libexec/lambda2-sse4 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/bin/lambda2 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-AGPL3.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/README.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_installdocs -O--builddirectory=build install -m0755 -d debian/lambda-align2/usr/share/doc/lambda-align2 install -p -m0644 debian/copyright debian/lambda-align2/usr/share/doc/lambda-align2/copyright dh_installchangelogs -O--builddirectory=build install -m0755 -d debian/lambda-align2/usr/share/doc/lambda-align2 install -p -m0644 debian/.debhelper/generated/lambda-align2/dh_installchangelogs.dch.trimmed debian/lambda-align2/usr/share/doc/lambda-align2/changelog.Debian rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' sed -i -e 's@\(defaults to working directory\.\).*@\1@g' ./debian/lambda-align2/usr/share/man/man1/*.1 sed -i -e 's@\(number of threads to run concurrently\).*@\1. Default: autodetected.@g' ./debian/lambda-align2/usr/share/man/man1/*.1 sed -i 's/LAMBDA2 MKINDEXN/LAMBDA2_MKINDEXN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 sed -i 's/^lambda2 mkindexn /lambda2_mkindexn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 sed -i 's/LAMBDA2 MKINDEXP/LAMBDA2_MKINDEXP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 sed -i 's/^lambda2 mkindexp /lambda2_mkindexp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 sed -i 's/LAMBDA2 SEARCHN/LAMBDA2_SEARCHN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 sed -i 's/^lambda2 searchn /lambda2_searchn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 sed -i 's/LAMBDA2 SEARCHP/LAMBDA2_SEARCHP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 sed -i 's/^lambda2 searchp /lambda2_searchp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build cd debian/lambda-align2 chmod a-x usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1 gzip -9nf usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1 cd '/build/reproducible-path/lambda-align2-2.0.1' dh_fixperms -O--builddirectory=build find debian/lambda-align2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/lambda-align2/usr/share/doc -type f -a -true -a ! -regex 'debian/lambda-align2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/lambda-align2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2/usr/bin debian/lambda-align2/usr/libexec -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--builddirectory=build rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' # pass make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_strip -a -O--builddirectory=build strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2-sse4 strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2 dh_makeshlibs -a -O--builddirectory=build rm -f debian/lambda-align2/DEBIAN/shlibs dh_shlibdeps -a -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN dpkg-shlibdeps -Tdebian/lambda-align2.substvars debian/lambda-align2/usr/libexec/lambda2-sse4 debian/lambda-align2/usr/libexec/lambda2 dh_installdeb -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN dh_gencontrol -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN echo misc:Depends= >> debian/lambda-align2.substvars echo misc:Pre-Depends= >> debian/lambda-align2.substvars dpkg-gencontrol -plambda-align2 -ldebian/changelog -Tdebian/lambda-align2.substvars -cdebian/control -Pdebian/lambda-align2 chmod 0644 -- debian/lambda-align2/DEBIAN/control dh_md5sums -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN cd debian/lambda-align2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lambda-align2/DEBIAN/md5sums dh_builddeb -O--builddirectory=build dpkg-deb --root-owner-group --build debian/lambda-align2 .. dpkg-deb: building package 'lambda-align2' in '../lambda-align2_2.0.1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align2_2.0.1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../lambda-align2_2.0.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3673349 and its subdirectories I: Current time: Fri Aug 8 01:22:53 +14 2025 I: pbuilder-time-stamp: 1754565773 + false + set +x Thu Aug 7 11:22:53 UTC 2025 I: Signing ./b2/lambda-align2_2.0.1-3_amd64.buildinfo as lambda-align2_2.0.1-3_amd64.buildinfo.asc Thu Aug 7 11:22:53 UTC 2025 I: Signed ./b2/lambda-align2_2.0.1-3_amd64.buildinfo as ./b2/lambda-align2_2.0.1-3_amd64.buildinfo.asc Thu Aug 7 11:22:53 UTC 2025 - build #2 for lambda-align2/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Thu Aug 7 11:22:53 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-0PyHs5zC, removing. /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL: total 156 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 11:19 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 11:22 b2 -rw-r--r-- 1 jenkins jenkins 2178 Nov 28 2024 lambda-align2_2.0.1-3.dsc -rw------- 1 jenkins jenkins 143046 Aug 7 11:19 rbuildlog.ziIkmYH /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b1: total 2168 -rw-r--r-- 1 jenkins jenkins 139438 Aug 7 11:19 build.log -rw-r--r-- 1 jenkins jenkins 17604 Aug 7 11:19 lambda-align2_2.0.1-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2178 Aug 7 11:19 lambda-align2_2.0.1-3.dsc -rw-r--r-- 1 jenkins jenkins 5757 Aug 7 11:19 lambda-align2_2.0.1-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6639 Aug 7 11:19 lambda-align2_2.0.1-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1218 Aug 7 11:19 lambda-align2_2.0.1-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 2017040 Aug 7 11:19 lambda-align2_2.0.1-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1378 Aug 7 11:19 lambda-align2_2.0.1-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b2: total 2160 -rw-r--r-- 1 jenkins jenkins 141359 Aug 7 11:22 build.log -rw-r--r-- 1 jenkins jenkins 17604 Aug 7 11:22 lambda-align2_2.0.1-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2178 Aug 7 11:22 lambda-align2_2.0.1-3.dsc -rw-r--r-- 1 jenkins jenkins 5744 Aug 7 11:22 lambda-align2_2.0.1-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6626 Aug 7 11:22 lambda-align2_2.0.1-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1218 Aug 7 11:22 lambda-align2_2.0.1-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 2017040 Aug 7 11:22 lambda-align2_2.0.1-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1378 Aug 7 11:22 lambda-align2_2.0.1-3_source.changes Thu Aug 7 11:22:53 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Aug 7 11:22:54 UTC 2025 I: lambda-align2_2.0.1-3_amd64.changes: Format: 1.8 Date: Thu, 28 Nov 2024 13:53:13 +0100 Source: lambda-align2 Binary: lambda-align2 Architecture: amd64 Version: 2.0.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Enrico Seiler Description: lambda-align2 - Local Aligner for Massive Biological DatA - v2 Changes: lambda-align2 (2.0.1-3) unstable; urgency=medium . * Team upload. * Added patch to enable install on non-amd64 archs * d/control: build on any arch * d/control: openssl is only needed for tests Checksums-Sha1: 331fde038ba300f009d88ba4646072ab684aa162 5757 lambda-align2_2.0.1-3_amd64.buildinfo c17507f5fe945ae0c18c6e05fed8fd2eea6b2a2d 2017040 lambda-align2_2.0.1-3_amd64.deb Checksums-Sha256: 60dfc3ef422450d0cd6bf6d9673d4ff278c0b22cb3e503df2906a740789017f3 5757 lambda-align2_2.0.1-3_amd64.buildinfo b0d7d671c72b7406879f510114e78a4ce1af8ec637926861a05691f96e30f9c8 2017040 lambda-align2_2.0.1-3_amd64.deb Files: b65ca6780799ead5043ea2bd7bf7b654 5757 science optional lambda-align2_2.0.1-3_amd64.buildinfo f8b7fbb2c6d56a31bc77d020b349e537 2017040 science optional lambda-align2_2.0.1-3_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/lambda-align2_2.0.1-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/lambda-align2_2.0.1-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/lambda-align2_2.0.1-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/lambda-align2_2.0.1-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/lambda-align2_2.0.1-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/lambda-align2_2.0.1-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-08-07 11:19:21.814584887 +0000 +++ b2/build.log 2025-08-07 11:22:53.742860738 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 9 05:38:49 -12 2026 -I: pbuilder-time-stamp: 1788975529 +I: Current time: Fri Aug 8 01:19:23 +14 2025 +I: pbuilder-time-stamp: 1754565563 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying 0006-Fix-binaries-not-being-installed-on-non-amd64-archs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/565511/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 7 11:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='55f5b1e5e8ef4ab1a4b1ed43107abe29' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='565511' - PS1='# ' - PS2='> ' + INVOCATION_ID=92e227f77be647f98fb94a97d09b2e7a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3673349 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/pbuilderrc_mgNw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b1 --logfile b1/build.log lambda-align2_2.0.1-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/pbuilderrc_xKKt --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b2 --logfile b2/build.log lambda-align2_2.0.1-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/565511/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -181,7 +213,7 @@ Get: 61 http://deb.debian.org/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 35.1 MB in 4s (9343 kB/s) +Fetched 35.1 MB in 0s (132 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) @@ -448,7 +480,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/lambda-align2-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align2_2.0.1-3_source.changes +I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lambda-align2-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align2_2.0.1-3_source.changes dpkg-buildpackage: info: source package lambda-align2 dpkg-buildpackage: info: source version 2.0.1-3 dpkg-buildpackage: info: source distribution unstable @@ -548,7 +584,7 @@ to work with policies introduced by or earlier. --- Configuring done (1.1s) +-- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -561,7 +597,7 @@ -- Build files have been written to: /build/reproducible-path/lambda-align2-2.0.1/build make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_auto_build -O--builddirectory=build - cd build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles /build/reproducible-path/lambda-align2-2.0.1/build//CMakeFiles/progress.marks @@ -579,10 +615,10 @@ make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' -[ 22%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o +[ 11%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o +cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=40 -s -MD -MT src/CMakeFiles/lambda2.dir/lambda.cpp.o -MF CMakeFiles/lambda2.dir/lambda.cpp.o.d -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp [ 22%] Building CXX object src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -mmmx -msse -msse2 -msse3 -mssse3 -msse4 -mpopcnt -MD -MT src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -MF CMakeFiles/lambda2-sse4.dir/lambda.cpp.o.d -o CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp -cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -MD -MT src/CMakeFiles/lambda2.dir/lambda.cpp.o -MF CMakeFiles/lambda2.dir/lambda.cpp.o.d -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp +cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=40 -s -mmmx -msse -msse2 -msse3 -mssse3 -msse4 -mpopcnt -MD -MT src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -MF CMakeFiles/lambda2-sse4.dir/lambda.cpp.o.d -o CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:32, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:22: /build/reproducible-path/lambda-align2-2.0.1/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -661,6 +697,8 @@ | ~~~~~~^~~~~~~~~~~ [ 33%] Linking CXX executable ../bin/lambda2 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2.dir/link.txt --verbose=1 +[ 44%] Linking CXX executable ../bin/lambda2-sse4 +cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2-sse4.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -800,16 +838,19 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'operator++.isra': +/usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -[ 44%] Linking CXX executable ../bin/lambda2-sse4 -cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2-sse4.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -849,16 +890,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'process.isra': +/usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -875,7 +911,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -896,7 +932,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -917,7 +953,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -938,11 +974,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'insertStream': +/usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1002,12 +1038,15 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function 'assign.constprop.isra': +/usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1025,15 +1064,12 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'process.isra': +/usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1119,11 +1155,10 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:345:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1171,10 +1206,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:345:26: + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1182,7 +1218,7 @@ /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2.dir/link.d CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=40 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2.dir/link.d CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 44%] Built target lambda2 make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend @@ -1191,18 +1227,12 @@ make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' -[ 88%] Generating lambda2.1 -[ 88%] Generating lambda2-searchp.1 -[ 88%] Generating lambda2-searchn.1 -[ 88%] Generating lambda2-mkindexn.1 -[100%] Generating lambda2-mkindexp.1 -cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 +[ 55%] Generating lambda2.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 --export-help=man > lambda2.1 +[ 66%] Generating lambda2-searchn.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchn --export-help=man > lambda2-searchn.1 +[ 77%] Generating lambda2-searchp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1 -cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1 -make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' -[100%] Built target manual In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -1281,6 +1311,8 @@ /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ +[ 88%] Generating lambda2-mkindexn.1 +cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -1307,6 +1339,10 @@ /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ +[100%] Generating lambda2-mkindexp.1 +cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1 +make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' +[100%] Built target manual In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -1346,16 +1382,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'process.isra': +/usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1373,12 +1404,15 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function 'assign.constprop.isra': +/usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1395,11 +1429,13 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'operator++.isra': +/usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1441,7 +1477,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1462,7 +1498,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1525,7 +1561,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1546,7 +1582,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1722,7 +1758,7 @@ /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2-sse4.dir/link.d "CMakeFiles/lambda2-sse4.dir/lambda.cpp.o" -o ../bin/lambda2-sse4 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=40 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file=CMakeFiles/lambda2-sse4.dir/link.d "CMakeFiles/lambda2-sse4.dir/lambda.cpp.o" -o ../bin/lambda2-sse4 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [100%] Built target lambda2-sse4 make[2]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' @@ -1742,7 +1778,7 @@ rm -fr -- debian/.debhelper/generated/lambda-align2/ debian/lambda-align2/ debian/tmp/ dh_auto_install --destdir=debian/lambda-align2/ -O--builddirectory=build install -m0755 -d /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 - cd build && make -j42 install DESTDIR=/build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build && make -j40 install DESTDIR=/build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1795,16 +1831,16 @@ man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 - mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 - chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 - mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 - chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 - mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 - chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 + mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 + chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 + mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 + chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 + mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 + chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build @@ -1829,13 +1865,13 @@ # pass make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_strip -a -O--builddirectory=build - strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2 strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2-sse4 + strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2 dh_makeshlibs -a -O--builddirectory=build rm -f debian/lambda-align2/DEBIAN/shlibs dh_shlibdeps -a -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN - dpkg-shlibdeps -Tdebian/lambda-align2.substvars debian/lambda-align2/usr/libexec/lambda2 debian/lambda-align2/usr/libexec/lambda2-sse4 + dpkg-shlibdeps -Tdebian/lambda-align2.substvars debian/lambda-align2/usr/libexec/lambda2-sse4 debian/lambda-align2/usr/libexec/lambda2 dh_installdeb -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN dh_gencontrol -O--builddirectory=build @@ -1858,12 +1894,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3673349/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/565511 and its subdirectories -I: Current time: Wed Sep 9 05:42:20 -12 2026 -I: pbuilder-time-stamp: 1788975740 +I: removing directory /srv/workspace/pbuilder/3673349 and its subdirectories +I: Current time: Fri Aug 8 01:22:53 +14 2025 +I: pbuilder-time-stamp: 1754565773 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/lambda-align2_2.0.1-3.diff: 85.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/lambda-align2_2.0.1-3.diff.gz b2/build.log: 90.1% -- replaced with stdout Compressing the 1st log... b1/build.log: 90.6% -- replaced with stdout Thu Aug 7 11:22:55 UTC 2025 I: diffoscope 303 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_lambda-align2_unstable_amd64_1754565775 + touch /var/log/reproducible-builds/diffoscope_stamp_lambda-align2_unstable_amd64_1754565775 + RESULT=0 + systemd-run '--description=diffoscope on lambda-align2/2.0.1-3 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_22-53951 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL --run-session -c jenkins-reproducible-unstable-diffoscope-0bda82ac-0c0d-49a0-abad-9c71c97f1522 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/dbd-tmp-11pfqeU ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/lambda-align2_2.0.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/lambda-align2_2.0.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/lambda-align2_2.0.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b1/lambda-align2_2.0.1-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b2/lambda-align2_2.0.1-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_22-53951.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/lambda-align2_2.0.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/lambda-align2_2.0.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/lambda-align2_2.0.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b1/lambda-align2_2.0.1-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.l3J9bOlL/b2/lambda-align2_2.0.1-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 160ms CPU time consumed: 161ms _ _ _ _ _ ____ | | __ _ _ __ ___ | |__ __| | __ _ __ _| (_) __ _ _ __ |___ \ | |/ _` | '_ ` _ \| '_ \ / _` |/ _` |_____ / _` | | |/ _` | '_ \ __) | | | (_| | | | | | | |_) | (_| | (_| |_____| (_| | | | (_| | | | |/ __/ |_|\__,_|_| |_| |_|_.__/ \__,_|\__,_| \__,_|_|_|\__, |_| |_|_____| |___/ Thu Aug 7 11:22:55 UTC 2025 I: diffoscope 303 found no differences in the changes files, and a .buildinfo file also exists. Thu Aug 7 11:22:55 UTC 2025 I: lambda-align2 from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-08-07 11:22:55] INFO: Starting at 2025-08-07 11:22:55.740472 [2025-08-07 11:22:55] INFO: Generating the pages of 1 package(s) [2025-08-07 11:22:55] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/lambda-align2 didn't produce a buildlog, even though it has been built. [2025-08-07 11:22:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/lambda-align2_2.0.0-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/lambda-align2_2.0.0-9.diff.gz is missing [2025-08-07 11:22:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/lambda-align2_2.0.0-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/lambda-align2_2.0.0-9.diff.gz is missing [2025-08-07 11:22:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/lambda-align2_2.0.0-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/lambda-align2_2.0.0-9.diff.gz is missing [2025-08-07 11:22:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/lambda-align2_2.0.0-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/lambda-align2_2.0.0-9.diff.gz is missing [2025-08-07 11:22:55] INFO: Finished at 2025-08-07 11:22:55.934678, took: 0:00:00.194208 Thu Aug 7 11:22:55 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/lambda-align2.html Thu Aug 7 11:22:55 UTC 2025 I: Removing signed lambda-align2_2.0.1-3_amd64.buildinfo.asc files: removed './b1/lambda-align2_2.0.1-3_amd64.buildinfo.asc' removed './b2/lambda-align2_2.0.1-3_amd64.buildinfo.asc' 1754565775 amd64 unstable lambda-align2 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/lambda-align2_2.0.1-3.rbuild.log: 89.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/lambda-align2_2.0.1-3.rbuild.log.gz [2025-08-07 11:22:56] INFO: Starting at 2025-08-07 11:22:56.210025 [2025-08-07 11:22:56] INFO: Generating the pages of 1 package(s) [2025-08-07 11:22:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/lambda-align2_2.0.0-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/lambda-align2_2.0.0-9.diff.gz is missing [2025-08-07 11:22:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/lambda-align2_2.0.0-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/lambda-align2_2.0.0-9.diff.gz is missing [2025-08-07 11:22:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/lambda-align2_2.0.0-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/lambda-align2_2.0.0-9.diff.gz is missing [2025-08-07 11:22:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/lambda-align2_2.0.0-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/lambda-align2_2.0.0-9.diff.gz is missing [2025-08-07 11:22:56] INFO: Finished at 2025-08-07 11:22:56.431112, took: 0:00:00.221089 All cleanup done. Thu Aug 7 11:22:56 UTC 2025 - total duration: 0h 7m 30s. Thu Aug 7 11:22:56 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-SKudfLUz, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 7min 30.584s CPU time consumed: 5.177s