Running as unit: rb-build-amd64_23-51700.service ==================================================================================== Wed Apr 2 23:15:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_23) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Wed Apr 2 23:15:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-yU0WP0hS" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Apr 2 23:15:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Wed Apr 2 23:15:59 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Lw9UHk' Wed Apr 2 23:16:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Apr 2 23:16:00 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-8NtbNU' ok, let's check if simka is building anywhere yet… ok, simka is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of simka in trixie on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Wed Apr 2 23:16:20 UTC 2025 I: starting to build simka/trixie/amd64 on jenkins on '2025-04-02 23:15' Wed Apr 2 23:16:20 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/51700/console.log 1743635780 amd64 trixie simka Wed Apr 2 23:16:20 UTC 2025 I: Downloading source for trixie/simka=1.5.3-8 --2025-04-02 23:16:20-- http://deb.debian.org/debian/pool/main/s/simka/simka_1.5.3-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2227 (2.2K) [text/prs.lines.tag] Saving to: ‘simka_1.5.3-8.dsc’ 0K .. 100% 274M=0s 2025-04-02 23:16:20 (274 MB/s) - ‘simka_1.5.3-8.dsc’ saved [2227/2227] --2025-04-02 23:16:20-- http://deb.debian.org/debian/pool/main/s/simka/simka_1.5.3-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2227 (2.2K) [text/prs.lines.tag] Saving to: ‘simka_1.5.3-8.dsc’ 0K .. 100% 274M=0s 2025-04-02 23:16:20 (274 MB/s) - ‘simka_1.5.3-8.dsc’ saved [2227/2227] Wed Apr 2 23:16:20 UTC 2025 I: simka_1.5.3-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: simka Binary: simka, simkamin Architecture: any-amd64 arm64 loong64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha all Version: 1.5.3-8 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust Homepage: https://github.com/GATB/simka Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/simka Vcs-Git: https://salsa.debian.org/med-team/simka.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgatbcore-dev, zlib1g-dev, libhdf5-dev, libboost-dev, python3-all, dh-sequence-python3, chrpath Package-List: simka deb science optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,ia64,ppc64,riscv64,sparc64,alpha simkamin deb science optional arch=all Checksums-Sha1: 2b4e7951051e7669b65d5f81af15fc9cbb2dea4e 168163 simka_1.5.3.orig.tar.gz c01d6a83db1848115a51c1824de6ada7e9dfa665 22048 simka_1.5.3-8.debian.tar.xz Checksums-Sha256: 545182a28430a8149efd709d9be323683c07ab289c5d0e345b67819f845d0628 168163 simka_1.5.3.orig.tar.gz 80df81ef6fc7f4ee8716b2d815cae0ce0d78b92d715dd7c2a25769957ad47cf6 22048 simka_1.5.3-8.debian.tar.xz Files: 29e4c0b033b034e7bab2ad96cabde230 168163 simka_1.5.3.orig.tar.gz a7ceb3cabc41b589534adc7879f8ad2b 22048 simka_1.5.3-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWe8IkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFPjw/+MNMSCP9NAvMXr177s4chb152ZMF/j/mK YdcbJH4E5s/DMtqeuOOHq14aWnhZSUiZwhwg/NP3oDqYhLL+UatuZRRx3hgX2B7i jrCaUxc6NXM5eebfjwc0EpGm7a8zLMYEpgKEVjWWrv4Rd0U/LK99yOSGZAcETzFw U1QuJifKR9FEUCw+lyF/kLCNPRXsh0KHT8guu3AmDxn2VQWrq55pBpUtP8BoNn3e GCmtpoqYf3iE0savAeR1kWHUpGOtqPBrRB5HPKqgU/JojQ+9vg3rWl53nSuycI3j poIC8fMLQKohi39RxHf3iPRKhhLbhGdqCKGaf4G+PI5Z7dtM2fXibCCXmsL+j643 7CMg0XazvkKWQQja3MGwz49WqgRsoL84eFtWatjPDLzAjECTUP6vZAoZxS1q3YeY StQhIzeO3iclKfYOXcutNadrc5FgpwcPwIEjJeHsYqDU9zTipBVNOavMWm3U9huW 1PhWruLyeh1SyBnw+eH6zASZInwoAWedzsfAAPaRyZxad8WE/yqO/D8x7Lbb3kDP rGpTYR3YQR4h66Khgq/14UA2du1cuB6l/qd71SUJlp4aOxk2xuQpM0WGmERCJC7e 2pW2w2EAdUWtB7FYdOqx08bLPB2ZhbYXIuwr97chMh8dS/+PgfC3QkI1BJG2CuRZ Bm4d/Y4w23I= =0I1b -----END PGP SIGNATURE----- Wed Apr 2 23:16:20 UTC 2025 I: Checking whether the package is not for us Wed Apr 2 23:16:20 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed Apr 2 23:16:20 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed Apr 2 23:16:20 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Wed Apr 2 23:16:20 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-omi4Yr' ==================================================================================== Wed Apr 2 23:16:21 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 simka trixie /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR 1.5.3-8" as arguments. Wed Apr 2 23:16:21 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-5kV9l1mS" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Apr 2 23:16:21 UTC 2025 I: Downloading source for trixie/simka=1.5.3-8 Reading package lists... NOTICE: 'simka' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/simka.git Please use: git clone https://salsa.debian.org/med-team/simka.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 192 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (dsc) [2227 B] Get:2 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (tar) [168 kB] Get:3 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (diff) [22.0 kB] Fetched 192 kB in 0s (3399 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'simka' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/simka.git Please use: git clone https://salsa.debian.org/med-team/simka.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 192 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (dsc) [2227 B] Get:2 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (tar) [168 kB] Get:3 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (diff) [22.0 kB] Fetched 192 kB in 0s (3399 kB/s) Download complete and in download only mode ============================================================================= Building simka in trixie on amd64 on ionos11-amd64 now. Date: Wed Apr 2 23:16:22 UTC 2025 Date UTC: Wed Apr 2 23:16:22 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 2 11:16:22 -12 2025 I: pbuilder-time-stamp: 1743635782 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [simka_1.5.3-8.dsc] I: copying [./simka_1.5.3.orig.tar.gz] I: copying [./simka_1.5.3-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./simka_1.5.3-8.dsc: unsupported subcommand dpkg-source: info: extracting simka in simka-1.5.3 dpkg-source: info: unpacking simka_1.5.3.orig.tar.gz dpkg-source: info: unpacking simka_1.5.3-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_temp_arrays.patch dpkg-source: info: applying detailed_errors.patch dpkg-source: info: applying fix_binary_path.patch dpkg-source: info: applying fix_test_path.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying use_debian_packaged_libraries.patch dpkg-source: info: applying high_cores_count.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3776757/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c1c57356891c4c05beca0fc6f7321495' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3776757' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/pbuilderrc_B3qK --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b1 --logfile b1/build.log simka_1.5.3-8.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3776757/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgatbcore-dev, zlib1g-dev, libhdf5-dev, libboost-dev, python3-all, dh-sequence-python3, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgatbcore-dev; however: Package libgatbcore-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgatbcore-dev{a} libgatbcore3{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 72.6 MB of archives. After unpacking 454 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-1 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-2 [746 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.13.0~rc3-1 [380 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 61 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-1+b1 [56.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 68 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250308 [115 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 83 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 86 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.9+dfsg-2 [311 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.13.0~rc3-1 [497 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libgatbcore3 amd64 1.4.2+dfsg-13+b4 [1837 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libgatbcore-dev amd64 1.4.2+dfsg-13+b4 [3806 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.2-2 [1044 B] Fetched 72.6 MB in 7s (11.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-2_amd64.deb ... Unpacking python3.13-minimal (3.13.2-2) ... Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20139 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_amd64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-1_all.deb ... Unpacking tzdata (2025b-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-2_amd64.deb ... Unpacking python3.13 (3.13.2-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21150 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.2-2_amd64.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-5_amd64.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-7_amd64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package chrpath. Preparing to unpack .../018-chrpath_0.18-1_amd64.deb ... Unpacking chrpath (0.18-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../019-cmake-data_3.31.6-1_all.deb ... Unpacking cmake-data (3.31.6-1) ... Selecting previously unselected package libxml2:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/simka-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../simka_1.5.3-8_source.changes dpkg-buildpackage: info: source package simka dpkg-buildpackage: info: source version 1.5.3-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. 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/build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/simple_test.sh -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/D_paired_1.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/A.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc/job_merge.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc/job_count.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge/job_merge.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge/job_count.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/simka_input.txt -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/C.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/B.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin_update.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin_utils.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/README.md -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/sonarqube_diags -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/heatmap.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/dendro.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/pca.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/run-visualization.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./README.md -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./LICENSE make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_install -a chrpath --delete debian/simka/usr/bin/* rm -rf debian/tmp/usr/example \ debian/tmp/usr/scripts make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_install -i ls -l debian/simkamin/usr/share && ls -l debian/simkamin/usr/share/simkamin total 12 drwxr-xr-x 3 pbuilder1 pbuilder1 4096 Apr 2 11:20 doc drwxr-xr-x 3 pbuilder1 pbuilder1 4096 Apr 2 11:20 man drwxr-xr-x 2 pbuilder1 pbuilder1 4096 Apr 2 11:20 simkamin total 32 -rw-r--r-- 1 pbuilder1 pbuilder1 8898 Apr 2 11:16 simkaMin.py -rw-r--r-- 1 pbuilder1 pbuilder1 9961 Apr 2 11:16 simkaMin_update.py -rw-r--r-- 1 pbuilder1 pbuilder1 5354 Dec 30 2020 simkaMin_utils.py rm -rf debian/tmp/usr/example \ debian/tmp/usr/scripts set -e; for file in debian/simkamin/usr/share/simkamin/*.py; do mv "$file" "${file%%.py}"; done mv debian/simkamin/usr/share/simkamin/simkaMin_utils debian/simkamin/usr/share/simkamin/simkaMin_utils.py make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_installman rm -rf debian/simka/usr/share/man/man1/simkaMin.1 \ debian/simka/usr/share/man/man1/simkaMin_update.1 make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_fixperms chmod +x debian/*/usr/bin/* make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'simka' in '../simka_1.5.3-8_amd64.deb'. dpkg-deb: building package 'simkamin' in '../simkamin_1.5.3-8_all.deb'. dpkg-deb: building package 'simka-dbgsym' in '../simka-dbgsym_1.5.3-8_amd64.deb'. dpkg-genbuildinfo --build=binary -O../simka_1.5.3-8_amd64.buildinfo dpkg-genchanges --build=binary -O../simka_1.5.3-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3776757 and its subdirectories I: Current time: Wed Apr 2 11:21:12 -12 2025 I: pbuilder-time-stamp: 1743636072 Wed Apr 2 23:21:12 UTC 2025 I: Signing ./b1/simka_1.5.3-8_amd64.buildinfo as simka_1.5.3-8_amd64.buildinfo.asc Wed Apr 2 23:21:12 UTC 2025 I: Signed ./b1/simka_1.5.3-8_amd64.buildinfo as ./b1/simka_1.5.3-8_amd64.buildinfo.asc Wed Apr 2 23:21:12 UTC 2025 - build #1 for simka/trixie/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Wed Apr 2 23:21:12 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-5kV9l1mS, removing. /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 2 23:21 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 2 23:16 b2 -rw------- 1 jenkins jenkins 3311 Apr 2 23:16 rbuildlog.PdKXtGs -rw-r--r-- 1 jenkins jenkins 2227 Jan 10 2024 simka_1.5.3-8.dsc /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b1: total 7868 -rw-r--r-- 1 jenkins jenkins 104035 Apr 2 23:21 build.log -rw-r--r-- 1 jenkins jenkins 7421252 Apr 2 23:21 simka-dbgsym_1.5.3-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 22048 Apr 2 23:21 simka_1.5.3-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2227 Apr 2 23:21 simka_1.5.3-8.dsc -rw-r--r-- 1 jenkins jenkins 8165 Apr 2 23:21 simka_1.5.3-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9047 Apr 2 23:21 simka_1.5.3-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1777 Apr 2 23:21 simka_1.5.3-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 435588 Apr 2 23:21 simka_1.5.3-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1284 Apr 2 23:21 simka_1.5.3-8_source.changes -rw-r--r-- 1 jenkins jenkins 32320 Apr 2 23:21 simkamin_1.5.3-8_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b2: total 0 Wed Apr 2 23:21:13 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 2 11:16:22 -12 2025 I: pbuilder-time-stamp: 1743635782 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [simka_1.5.3-8.dsc] I: copying [./simka_1.5.3.orig.tar.gz] I: copying [./simka_1.5.3-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./simka_1.5.3-8.dsc: unsupported subcommand dpkg-source: info: extracting simka in simka-1.5.3 dpkg-source: info: unpacking simka_1.5.3.orig.tar.gz dpkg-source: info: unpacking simka_1.5.3-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_temp_arrays.patch dpkg-source: info: applying detailed_errors.patch dpkg-source: info: applying fix_binary_path.patch dpkg-source: info: applying fix_test_path.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying use_debian_packaged_libraries.patch dpkg-source: info: applying high_cores_count.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3776757/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c1c57356891c4c05beca0fc6f7321495' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3776757' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/pbuilderrc_B3qK --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b1 --logfile b1/build.log simka_1.5.3-8.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3776757/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgatbcore-dev, zlib1g-dev, libhdf5-dev, libboost-dev, python3-all, dh-sequence-python3, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgatbcore-dev; however: Package libgatbcore-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgatbcore-dev{a} libgatbcore3{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 72.6 MB of archives. After unpacking 454 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-1 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-2 [746 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.13.0~rc3-1 [380 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 61 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-1+b1 [56.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 68 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250308 [115 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 83 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 86 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.9+dfsg-2 [311 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.13.0~rc3-1 [497 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libgatbcore3 amd64 1.4.2+dfsg-13+b4 [1837 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libgatbcore-dev amd64 1.4.2+dfsg-13+b4 [3806 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.2-2 [1044 B] Fetched 72.6 MB in 7s (11.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-2_amd64.deb ... Unpacking python3.13-minimal (3.13.2-2) ... Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20139 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_amd64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-1_all.deb ... Unpacking tzdata (2025b-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-2_amd64.deb ... Unpacking python3.13 (3.13.2-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21150 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.2-2_amd64.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-5_amd64.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-7_amd64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package chrpath. Preparing to unpack .../018-chrpath_0.18-1_amd64.deb ... Unpacking chrpath (0.18-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../019-cmake-data_3.31.6-1_all.deb ... Unpacking cmake-data (3.31.6-1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../020-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../021-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../022-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../023-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../024-libcom-err2_1.47.2-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../025-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... 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Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../032-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../033-libldap2_2.6.9+dfsg-2_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../034-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../035-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../036-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/simka-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../simka_1.5.3-8_source.changes dpkg-buildpackage: info: source package simka dpkg-buildpackage: info: source version 1.5.3-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. 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/build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/simka_input.txt -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/C.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/B.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin_update.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin_utils.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/README.md -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/sonarqube_diags -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/heatmap.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/dendro.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/pca.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/run-visualization.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./README.md -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./LICENSE make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_install -a chrpath --delete debian/simka/usr/bin/* rm -rf debian/tmp/usr/example \ debian/tmp/usr/scripts make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_install -i ls -l debian/simkamin/usr/share && ls -l debian/simkamin/usr/share/simkamin total 12 drwxr-xr-x 3 pbuilder1 pbuilder1 4096 Apr 2 11:20 doc drwxr-xr-x 3 pbuilder1 pbuilder1 4096 Apr 2 11:20 man drwxr-xr-x 2 pbuilder1 pbuilder1 4096 Apr 2 11:20 simkamin total 32 -rw-r--r-- 1 pbuilder1 pbuilder1 8898 Apr 2 11:16 simkaMin.py -rw-r--r-- 1 pbuilder1 pbuilder1 9961 Apr 2 11:16 simkaMin_update.py -rw-r--r-- 1 pbuilder1 pbuilder1 5354 Dec 30 2020 simkaMin_utils.py rm -rf debian/tmp/usr/example \ debian/tmp/usr/scripts set -e; for file in debian/simkamin/usr/share/simkamin/*.py; do mv "$file" "${file%%.py}"; done mv debian/simkamin/usr/share/simkamin/simkaMin_utils debian/simkamin/usr/share/simkamin/simkaMin_utils.py make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_installman rm -rf debian/simka/usr/share/man/man1/simkaMin.1 \ debian/simka/usr/share/man/man1/simkaMin_update.1 make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_fixperms chmod +x debian/*/usr/bin/* make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'simka' in '../simka_1.5.3-8_amd64.deb'. dpkg-deb: building package 'simkamin' in '../simkamin_1.5.3-8_all.deb'. dpkg-deb: building package 'simka-dbgsym' in '../simka-dbgsym_1.5.3-8_amd64.deb'. dpkg-genbuildinfo --build=binary -O../simka_1.5.3-8_amd64.buildinfo dpkg-genchanges --build=binary -O../simka_1.5.3-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3776757 and its subdirectories I: Current time: Wed Apr 2 11:21:12 -12 2025 I: pbuilder-time-stamp: 1743636072 Wed Apr 2 23:21:13 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed Apr 2 23:21:13 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed Apr 2 23:21:13 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Apr 2 23:21:13 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-plrcuq' ==================================================================================== Wed May 6 05:44:14 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 simka trixie /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR 1.5.3-8" as arguments. Wed May 6 05:44:14 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-lfDzkWI7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed May 6 05:44:14 UTC 2026 I: Downloading source for trixie/simka=1.5.3-8 Reading package lists... NOTICE: 'simka' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/simka.git Please use: git clone https://salsa.debian.org/med-team/simka.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 192 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (dsc) [2227 B] Get:2 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (tar) [168 kB] Get:3 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (diff) [22.0 kB] Fetched 192 kB in 0s (4509 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'simka' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/simka.git Please use: git clone https://salsa.debian.org/med-team/simka.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 192 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (dsc) [2227 B] Get:2 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (tar) [168 kB] Get:3 http://deb.debian.org/debian trixie/main simka 1.5.3-8 (diff) [22.0 kB] Fetched 192 kB in 0s (4509 kB/s) Download complete and in download only mode ============================================================================= Re-Building simka in trixie on amd64 on ionos15-amd64 now. Date: Wed May 6 05:44:14 UTC 2026 Date UTC: Wed May 6 05:44:14 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.j2monehR + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/pbuilderrc_xCwq + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' simka = debian-installer -o simka = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' simka = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/pbuilderrc_xCwq --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b2 --logfile b2/build.log simka_1.5.3-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed May 6 19:44:14 +14 2026 I: pbuilder-time-stamp: 1778046254 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [simka_1.5.3-8.dsc] I: copying [./simka_1.5.3.orig.tar.gz] I: copying [./simka_1.5.3-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./simka_1.5.3-8.dsc: unsupported subcommand dpkg-source: info: extracting simka in simka-1.5.3 dpkg-source: info: unpacking simka_1.5.3.orig.tar.gz dpkg-source: info: unpacking simka_1.5.3-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_temp_arrays.patch dpkg-source: info: applying detailed_errors.patch dpkg-source: info: applying fix_binary_path.patch dpkg-source: info: applying fix_test_path.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying use_debian_packaged_libraries.patch dpkg-source: info: applying high_cores_count.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 6 05:44 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=1836d7fdc4e941b299d5e540d641362b LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1429266 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/pbuilderrc_xCwq --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b2 --logfile b2/build.log simka_1.5.3-8.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgatbcore-dev, zlib1g-dev, libhdf5-dev, libboost-dev, python3-all, dh-sequence-python3, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgatbcore-dev; however: Package libgatbcore-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgatbcore-dev{a} libgatbcore3{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 72.6 MB of archives. After unpacking 454 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-1 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-2 [746 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 41 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.13.0~rc3-1 [380 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 61 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-1+b1 [56.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 68 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250308 [115 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 83 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 86 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.9+dfsg-2 [311 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.13.0~rc3-1 [497 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libgatbcore3 amd64 1.4.2+dfsg-13+b4 [1837 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libgatbcore-dev amd64 1.4.2+dfsg-13+b4 [3806 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.2-2 [1044 B] Fetched 72.6 MB in 1s (126 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-2_amd64.deb ... Unpacking python3.13-minimal (3.13.2-2) ... Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20139 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_amd64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-1_all.deb ... Unpacking tzdata (2025b-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-2_amd64.deb ... Unpacking python3.13 (3.13.2-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21150 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.2-2_amd64.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-5_amd64.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-7_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/simka-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../simka_1.5.3-8_source.changes dpkg-buildpackage: info: source package simka dpkg-buildpackage: info: source version 1.5.3-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. 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"None" -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simka -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaCount -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaCountProcess -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaMerge -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaMinCore -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/C.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/simple_test.sh -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/D_paired_2.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/A.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/D_paired_1.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc/job_count.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc/job_merge.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge/job_count.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge/job_merge.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/simka_input.txt -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/B.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/dataset_metadata.csv -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/README.md -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin_update.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin_utils.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/heatmap.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/pca.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/dendro.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/run-visualization.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/sonarqube_diags -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./README.md -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./LICENSE make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_install -a chrpath --delete debian/simka/usr/bin/* rm -rf debian/tmp/usr/example \ debian/tmp/usr/scripts make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_install -i ls -l debian/simkamin/usr/share && ls -l debian/simkamin/usr/share/simkamin total 12 drwxr-xr-x 3 pbuilder2 pbuilder2 4096 May 6 19:45 doc drwxr-xr-x 3 pbuilder2 pbuilder2 4096 May 6 19:45 man drwxr-xr-x 2 pbuilder2 pbuilder2 4096 May 6 19:45 simkamin total 32 -rw-r--r-- 1 pbuilder2 pbuilder2 8898 May 6 19:44 simkaMin.py -rw-r--r-- 1 pbuilder2 pbuilder2 9961 May 6 19:44 simkaMin_update.py -rw-r--r-- 1 pbuilder2 pbuilder2 5354 Dec 31 2020 simkaMin_utils.py rm -rf debian/tmp/usr/example \ debian/tmp/usr/scripts set -e; for file in debian/simkamin/usr/share/simkamin/*.py; do mv "$file" "${file%%.py}"; done mv debian/simkamin/usr/share/simkamin/simkaMin_utils debian/simkamin/usr/share/simkamin/simkaMin_utils.py make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_installman rm -rf debian/simka/usr/share/man/man1/simkaMin.1 \ debian/simka/usr/share/man/man1/simkaMin_update.1 make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/simka-1.5.3' dh_fixperms chmod +x debian/*/usr/bin/* make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'simka' in '../simka_1.5.3-8_amd64.deb'. dpkg-deb: building package 'simka-dbgsym' in '../simka-dbgsym_1.5.3-8_amd64.deb'. dpkg-deb: building package 'simkamin' in '../simkamin_1.5.3-8_all.deb'. dpkg-genbuildinfo --build=binary -O../simka_1.5.3-8_amd64.buildinfo dpkg-genchanges --build=binary -O../simka_1.5.3-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1429266 and its subdirectories I: Current time: Wed May 6 19:45:51 +14 2026 I: pbuilder-time-stamp: 1778046351 + false + set +x Wed May 6 05:45:51 UTC 2026 I: Signing ./b2/simka_1.5.3-8_amd64.buildinfo as simka_1.5.3-8_amd64.buildinfo.asc Wed May 6 05:45:51 UTC 2026 I: Signed ./b2/simka_1.5.3-8_amd64.buildinfo as ./b2/simka_1.5.3-8_amd64.buildinfo.asc Wed May 6 05:45:51 UTC 2026 - build #2 for simka/trixie/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Wed May 6 05:45:51 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-lfDzkWI7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR: total 124 drwxr-xr-x 2 jenkins jenkins 4096 Apr 2 23:21 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 2 23:22 b2 -rw------- 1 jenkins jenkins 107635 Apr 2 23:21 rbuildlog.PdKXtGs -rw-r--r-- 1 jenkins jenkins 2227 Jan 10 2024 simka_1.5.3-8.dsc /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b1: total 7888 -rw-r--r-- 1 jenkins jenkins 104035 Apr 2 23:21 build.log -rw-r--r-- 1 jenkins jenkins 7421252 Apr 2 23:21 simka-dbgsym_1.5.3-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 22048 Apr 2 23:21 simka_1.5.3-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2227 Apr 2 23:21 simka_1.5.3-8.dsc -rw-r--r-- 1 jenkins jenkins 8165 Apr 2 23:21 simka_1.5.3-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9047 Apr 2 23:21 simka_1.5.3-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1777 Apr 2 23:21 simka_1.5.3-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 435588 Apr 2 23:21 simka_1.5.3-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1284 Apr 2 23:21 simka_1.5.3-8_source.changes -rw-r--r-- 1 jenkins jenkins 32320 Apr 2 23:21 simkamin_1.5.3-8_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b2: total 7868 -rw-r--r-- 1 jenkins jenkins 105977 Apr 2 23:22 build.log -rw-r--r-- 1 jenkins jenkins 7421252 Apr 2 23:22 simka-dbgsym_1.5.3-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 22048 Apr 2 23:22 simka_1.5.3-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2227 Apr 2 23:22 simka_1.5.3-8.dsc -rw-r--r-- 1 jenkins jenkins 8176 Apr 2 23:22 simka_1.5.3-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9058 Apr 2 23:22 simka_1.5.3-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1777 Apr 2 23:22 simka_1.5.3-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 435588 Apr 2 23:22 simka_1.5.3-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1284 Apr 2 23:22 simka_1.5.3-8_source.changes -rw-r--r-- 1 jenkins jenkins 32320 Apr 2 23:22 simkamin_1.5.3-8_all.deb Wed Apr 2 23:22:51 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed Apr 2 23:22:52 UTC 2025 I: simka_1.5.3-8_amd64.changes: Format: 1.8 Date: Wed, 10 Jan 2024 20:22:10 +0100 Source: simka Binary: simka simka-dbgsym simkamin Architecture: amd64 all Version: 1.5.3-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: simka - comparative metagenomics method dedicated to NGS datasets simkamin - approximate comparative metagenomics method dedicated to NGS data Closes: 1059213 Changes: simka (1.5.3-8) unstable; urgency=medium . * Team upload. * Add build support for loongarch64 Closes: #1059213 * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) Checksums-Sha1: bac6414a1f8bb224802b05722ecb92f7a383315e 7421252 simka-dbgsym_1.5.3-8_amd64.deb b59ddde64cc807e96e3b3f99ecc67825312abeec 8165 simka_1.5.3-8_amd64.buildinfo 11affaf99e64636e5b30160574fe75bb4ef1efc1 435588 simka_1.5.3-8_amd64.deb 9b34dbea7ee6810575c4ed14e11d560fa7e5f838 32320 simkamin_1.5.3-8_all.deb Checksums-Sha256: 820a3851d0121dad82be6057d39d6ef3dd8511b2f39e203cfffefa5b3354f7e4 7421252 simka-dbgsym_1.5.3-8_amd64.deb 8fff16e7630bb8eddd8a8fba7894a923d5f1146493b5f2c78e1fc7c6b090df54 8165 simka_1.5.3-8_amd64.buildinfo 1ba6896303baea9cab4a18d4b63d981262bad6272b41c88691a02a862e4aa783 435588 simka_1.5.3-8_amd64.deb abb30a3320fd0a31bcddf75df32ed3b4fb9327b83de9d3432d7448f1f41f258d 32320 simkamin_1.5.3-8_all.deb Files: 52f8ef92925b6c36dd1392322b440cc8 7421252 debug optional simka-dbgsym_1.5.3-8_amd64.deb 2909d657a0045b06515188c2d13d47ec 8165 science optional simka_1.5.3-8_amd64.buildinfo d4930186f29bf9e7b52e47e0f980fe18 435588 science optional simka_1.5.3-8_amd64.deb 9ea284b70e4dc7d06eb70e23c179c04f 32320 science optional simkamin_1.5.3-8_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/simka_1.5.3-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/simka_1.5.3-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/simka_1.5.3-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/simka_1.5.3-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/simka_1.5.3-8_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/simka_1.5.3-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-02 23:21:12.941132082 +0000 +++ b2/build.log 2025-04-02 23:22:51.890851415 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 2 11:16:22 -12 2025 -I: pbuilder-time-stamp: 1743635782 +I: Current time: Wed May 6 19:44:14 +14 2026 +I: pbuilder-time-stamp: 1778046254 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying high_cores_count.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3776757/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 6 05:44 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='c1c57356891c4c05beca0fc6f7321495' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3776757' - PS1='# ' - PS2='> ' + INVOCATION_ID=1836d7fdc4e941b299d5e540d641362b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1429266 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/pbuilderrc_B3qK --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b1 --logfile b1/build.log simka_1.5.3-8.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/pbuilderrc_xCwq --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b2 --logfile b2/build.log simka_1.5.3-8.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3776757/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -252,7 +284,7 @@ Get: 123 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.2-2 [1044 B] -Fetched 72.6 MB in 7s (11.2 MB/s) +Fetched 72.6 MB in 1s (126 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) @@ -666,8 +698,8 @@ Setting up tzdata (2025b-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Apr 2 23:19:14 UTC 2025. -Universal Time is now: Wed Apr 2 23:19:14 UTC 2025. +Local time is now: Wed May 6 05:44:50 UTC 2026. +Universal Time is now: Wed May 6 05:44:50 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -780,7 +812,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/simka-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../simka_1.5.3-8_source.changes +I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/simka-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../simka_1.5.3-8_source.changes dpkg-buildpackage: info: source package simka dpkg-buildpackage: info: source version 1.5.3-8 dpkg-buildpackage: info: source distribution unstable @@ -824,8 +860,8 @@ -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) --- Configuring done (2.2s) --- Generating done (0.1s) +-- Configuring done (0.6s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -836,7 +872,7 @@ -- Build files have been written to: /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/simka-1.5.3 -B/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -845,158 +881,158 @@ make -f CMakeFiles/simka.dir/build.make CMakeFiles/simka.dir/depend make -f CMakeFiles/simkaCountProcess.dir/build.make CMakeFiles/simkaCountProcess.dir/depend make -f CMakeFiles/simkaCount.dir/build.make CMakeFiles/simkaCount.dir/depend -make[3]: Entering directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/simka-1.5.3 /build/reproducible-path/simka-1.5.3 /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu/CMakeFiles/simka.dir/DependInfo.cmake "--color=" make -f CMakeFiles/simkaMerge.dir/build.make CMakeFiles/simkaMerge.dir/depend make -f CMakeFiles/simkaMinCore.dir/build.make CMakeFiles/simkaMinCore.dir/depend make[3]: Entering directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' -cd /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/simka-1.5.3 /build/reproducible-path/simka-1.5.3 /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu/CMakeFiles/simkaCountProcess.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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CMakeFiles/simkaMerge.dir/src/core/template/SimkaAlgorithmTemplate_192.cpp.o CMakeFiles/simkaMerge.dir/src/core/template/SimkaAlgorithmTemplate_224.cpp.o CMakeFiles/simkaMerge.dir/src/core/template/SimkaAlgorithmTemplate_256.cpp.o CMakeFiles/simkaMerge.dir/src/core/template/SimkaAlgorithmTemplate_32.cpp.o CMakeFiles/simkaMerge.dir/src/core/template/SimkaAlgorithmTemplate_64.cpp.o CMakeFiles/simkaMerge.dir/src/core/template/SimkaAlgorithmTemplate_96.cpp.o CMakeFiles/simkaMerge.dir/src/core/Simka.cpp.o CMakeFiles/simkaMerge.dir/src/core/SimkaAlgorithm.cpp.o CMakeFiles/simkaMerge.dir/src/core/SimkaDistance.cpp.o -o bin/simkaMerge -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial -lgatbcore -lhdf5 -lz make[3]: Leaving directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' -[100%] Built target simkaMerge +[ 98%] Built target simkaMerge +[100%] Linking CXX executable bin/simkaMinCore +/usr/bin/cmake -E cmake_link_script CMakeFiles/simkaMinCore.dir/link.txt --verbose=1 +/usr/bin/c++ -Wno-error -O2 -g -Wunused-result -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/simkaMinCore.dir/link.d CMakeFiles/simkaMinCore.dir/src/simkaMin/SimkaMin.cpp.o CMakeFiles/simkaMinCore.dir/src/simkaMin/MurmurHash3.cpp.o -o bin/simkaMinCore -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial -lgatbcore -lhdf5 -lz -lpthread +make[3]: Leaving directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' +[100%] Built target simkaMinCore make[2]: Leaving directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' @@ -1004,7 +1040,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/simka-1.5.3/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/simka-1.5.3/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/simka-1.5.3 -B/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1015,39 +1051,39 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaMerge --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaCount -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simka --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaMinCore +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaCount -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaCountProcess +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaMerge +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./bin/simkaMinCore -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/D_paired_2.fasta --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/dataset_metadata.csv +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/C.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/simple_test.sh --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/D_paired_1.fasta +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/D_paired_2.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/A.fasta +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/D_paired_1.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc/job_merge.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc/job_count.bash +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/tgcc/job_merge.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge/job_merge.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge/job_count.bash +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/potara_job/sge/job_merge.bash -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/simka_input.txt --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/C.fasta -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/B.fasta +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./example/dataset_metadata.csv -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin_update.py +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/README.md -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin.py +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin_update.py -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/simkaMin_utils.py --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./simkaMin/README.md -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/sonarqube_diags -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/heatmap.r --- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/dendro.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/pca.r +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/dendro.r -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/visualization/run-visualization.py +-- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./scripts/sonarqube_diags -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./README.md -- Installing: /build/reproducible-path/simka-1.5.3/debian/tmp/usr/./LICENSE make[1]: Leaving directory '/build/reproducible-path/simka-1.5.3/obj-x86_64-linux-gnu' @@ -1063,13 +1099,13 @@ dh_install -i ls -l debian/simkamin/usr/share && ls -l debian/simkamin/usr/share/simkamin total 12 -drwxr-xr-x 3 pbuilder1 pbuilder1 4096 Apr 2 11:20 doc -drwxr-xr-x 3 pbuilder1 pbuilder1 4096 Apr 2 11:20 man -drwxr-xr-x 2 pbuilder1 pbuilder1 4096 Apr 2 11:20 simkamin +drwxr-xr-x 3 pbuilder2 pbuilder2 4096 May 6 19:45 doc +drwxr-xr-x 3 pbuilder2 pbuilder2 4096 May 6 19:45 man +drwxr-xr-x 2 pbuilder2 pbuilder2 4096 May 6 19:45 simkamin total 32 --rw-r--r-- 1 pbuilder1 pbuilder1 8898 Apr 2 11:16 simkaMin.py --rw-r--r-- 1 pbuilder1 pbuilder1 9961 Apr 2 11:16 simkaMin_update.py --rw-r--r-- 1 pbuilder1 pbuilder1 5354 Dec 30 2020 simkaMin_utils.py +-rw-r--r-- 1 pbuilder2 pbuilder2 8898 May 6 19:44 simkaMin.py +-rw-r--r-- 1 pbuilder2 pbuilder2 9961 May 6 19:44 simkaMin_update.py +-rw-r--r-- 1 pbuilder2 pbuilder2 5354 Dec 31 2020 simkaMin_utils.py rm -rf debian/tmp/usr/example \ debian/tmp/usr/scripts set -e; for file in debian/simkamin/usr/share/simkamin/*.py; do mv "$file" "${file%%.py}"; done @@ -1102,8 +1138,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'simka' in '../simka_1.5.3-8_amd64.deb'. -dpkg-deb: building package 'simkamin' in '../simkamin_1.5.3-8_all.deb'. dpkg-deb: building package 'simka-dbgsym' in '../simka-dbgsym_1.5.3-8_amd64.deb'. +dpkg-deb: building package 'simkamin' in '../simkamin_1.5.3-8_all.deb'. dpkg-genbuildinfo --build=binary -O../simka_1.5.3-8_amd64.buildinfo dpkg-genchanges --build=binary -O../simka_1.5.3-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1111,12 +1147,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1429266/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3776757 and its subdirectories -I: Current time: Wed Apr 2 11:21:12 -12 2025 -I: pbuilder-time-stamp: 1743636072 +I: removing directory /srv/workspace/pbuilder/1429266 and its subdirectories +I: Current time: Wed May 6 19:45:51 +14 2026 +I: pbuilder-time-stamp: 1778046351 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/simka_1.5.3-8.diff: 91.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/simka_1.5.3-8.diff.gz b2/build.log: 86.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 87.0% -- replaced with stdout Wed Apr 2 23:22:53 UTC 2025 I: diffoscope 293 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_simka_trixie_amd64_1743636173 + touch /var/log/reproducible-builds/diffoscope_stamp_simka_trixie_amd64_1743636173 + RESULT=0 + systemd-run '--description=diffoscope on simka/1.5.3-8 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_23-51700 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR --run-session -c jenkins-reproducible-trixie-diffoscope-fa001771-fe5f-4d93-8cbc-8eec4dbd857c -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/dbd-tmp-qCwRLaN ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/simka_1.5.3-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/simka_1.5.3-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/simka_1.5.3-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b1/simka_1.5.3-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b2/simka_1.5.3-8_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_23-51700.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/simka_1.5.3-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/simka_1.5.3-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/simka_1.5.3-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b1/simka_1.5.3-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.j2monehR/b2/simka_1.5.3-8_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 229ms CPU time consumed: 229ms _ _ ___(_)_ __ ___ | | ____ _ / __| | '_ ` _ \| |/ / _` | \__ \ | | | | | | < (_| | |___/_|_| |_| |_|_|\_\__,_| Wed Apr 2 23:22:54 UTC 2025 I: diffoscope 293 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 2 23:22:54 UTC 2025 I: simka from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-02 23:22:54] INFO: Starting at 2025-04-02 23:22:54.656707 [2025-04-02 23:22:54] INFO: Generating the pages of 1 package(s) [2025-04-02 23:22:54] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/simka_1.5.3-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/simka_1.5.3-8.diff.gz is missing [2025-04-02 23:22:54] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/simka_1.5.3-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/simka_1.5.3-8.diff.gz is missing [2025-04-02 23:22:54] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/simka didn't produce a buildlog, even though it has been built. [2025-04-02 23:22:54] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/simka_1.5.3-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/simka_1.5.3-8.diff.gz is missing [2025-04-02 23:22:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/simka_1.5.3-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/simka_1.5.3-8.diff.gz is missing [2025-04-02 23:22:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/simka_1.5.3-7.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/simka_1.5.3-7.diff.gz is missing [2025-04-02 23:22:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/simka_1.5.3-7.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/simka_1.5.3-7.diff.gz is missing [2025-04-02 23:22:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/simka_1.5.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/simka_1.5.3-4.diff.gz is missing [2025-04-02 23:22:55] INFO: Finished at 2025-04-02 23:22:55.105051, took: 0:00:00.448348 Wed Apr 2 23:22:55 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/simka.html Wed Apr 2 23:22:55 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Apr 2 23:22:55 UTC 2025 I: Submitting 12K b1/simka_1.5.3-8_amd64.buildinfo.asc https://buildinfo.debian.net/b59ddde64cc807e96e3b3f99ecc67825312abeec/simka_1.5.3-8_all Wed Apr 2 23:22:56 UTC 2025 I: Submitting 12K b2/simka_1.5.3-8_amd64.buildinfo.asc https://buildinfo.debian.net/ac2deb032298f790489cb0fc4c2f5791a92b70f7/simka_1.5.3-8_all Wed Apr 2 23:22:57 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 2 23:22:57 UTC 2025 I: Done submitting .buildinfo files. Wed Apr 2 23:22:57 UTC 2025 I: Removing signed simka_1.5.3-8_amd64.buildinfo.asc files: removed './b1/simka_1.5.3-8_amd64.buildinfo.asc' removed './b2/simka_1.5.3-8_amd64.buildinfo.asc' 1743636177 amd64 trixie simka Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/simka_1.5.3-8.rbuild.log: 85.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/simka_1.5.3-8.rbuild.log.gz [2025-04-02 23:22:57] INFO: Starting at 2025-04-02 23:22:57.456288 [2025-04-02 23:22:57] INFO: Generating the pages of 1 package(s) [2025-04-02 23:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/simka_1.5.3-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/simka_1.5.3-8.diff.gz is missing [2025-04-02 23:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/simka_1.5.3-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/simka_1.5.3-8.diff.gz is missing [2025-04-02 23:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/simka_1.5.3-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/simka_1.5.3-8.diff.gz is missing [2025-04-02 23:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/simka_1.5.3-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/simka_1.5.3-8.diff.gz is missing [2025-04-02 23:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/simka_1.5.3-7.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/simka_1.5.3-7.diff.gz is missing [2025-04-02 23:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/simka_1.5.3-7.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/simka_1.5.3-7.diff.gz is missing [2025-04-02 23:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/simka_1.5.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/simka_1.5.3-4.diff.gz is missing [2025-04-02 23:22:57] INFO: Finished at 2025-04-02 23:22:57.843883, took: 0:00:00.387599 All cleanup done. Wed Apr 2 23:22:57 UTC 2025 - total duration: 0h 6m 55s. Wed Apr 2 23:22:57 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-yU0WP0hS, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 6min 58.068s CPU time consumed: 7.113s