Running as unit: rb-build-amd64_24-41605.service ==================================================================================== Thu Nov 28 16:46:09 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_24) on jenkins, called using "ionos15-amd64 ionos11-amd64" as arguments. Thu Nov 28 16:46:09 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-vcmUX1kB" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 28 16:46:09 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Nov 28 16:46:09 UTC 2024 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-vtxGwe' Thu Nov 28 16:46:09 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Nov 28 16:46:09 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Vpfc5V' ok, let's check if r-cran-phytools is building anywhere yet… ok, r-cran-phytools is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-cran-phytools in trixie on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Thu Nov 28 16:46:11 UTC 2024 I: starting to build r-cran-phytools/trixie/amd64 on jenkins on '2024-11-28 16:46' Thu Nov 28 16:46:11 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/41605/console.log 1732812371 amd64 trixie r-cran-phytools Thu Nov 28 16:46:11 UTC 2024 I: Downloading source for trixie/r-cran-phytools=2.3-0-1 --2024-11-28 16:46:11-- http://deb.debian.org/debian/pool/main/r/r-cran-phytools/r-cran-phytools_2.3-0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2338 (2.3K) [text/prs.lines.tag] Saving to: ‘r-cran-phytools_2.3-0-1.dsc’ 0K .. 100% 226M=0s 2024-11-28 16:46:11 (226 MB/s) - ‘r-cran-phytools_2.3-0-1.dsc’ saved [2338/2338] --2024-11-28 16:46:11-- http://deb.debian.org/debian/pool/main/r/r-cran-phytools/r-cran-phytools_2.3-0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2338 (2.3K) [text/prs.lines.tag] Saving to: ‘r-cran-phytools_2.3-0-1.dsc’ 0K .. 100% 226M=0s 2024-11-28 16:46:11 (226 MB/s) - ‘r-cran-phytools_2.3-0-1.dsc’ saved [2338/2338] Thu Nov 28 16:46:11 UTC 2024 I: r-cran-phytools_2.3-0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-cran-phytools Binary: r-cran-phytools Architecture: all Version: 2.3-0-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://cran.r-project.org/package=phytools Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-phytools Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-phytools.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-ape (>= 5.7), r-cran-maps, r-cran-clustergeneration, r-cran-coda, r-cran-combinat, r-cran-deoptim, r-cran-doparallel, r-cran-expm, r-cran-foreach, r-cran-mass, r-cran-mnormt, r-cran-nlme, r-cran-numderiv, r-cran-optimparallel, r-cran-phangorn, r-cran-scatterplot3d Package-List: r-cran-phytools deb gnu-r optional arch=all Checksums-Sha1: 08266b751b59712e2c069ce203fadcf46cbcafe3 502936 r-cran-phytools_2.3-0.orig.tar.gz d7d86931f740c48b933d595d7aa1372ff12d66f4 3404 r-cran-phytools_2.3-0-1.debian.tar.xz Checksums-Sha256: 973020a695be3fef94a37d7d6732d9352b66e44d30feb554d267b6aeb646d081 502936 r-cran-phytools_2.3-0.orig.tar.gz 025aa8ea0d7210981422ff8b38a492817545603587b70e4ff4801eb265a83be9 3404 r-cran-phytools_2.3-0-1.debian.tar.xz Files: 2915ac3b549fff920e8de6ea55ad6592 502936 r-cran-phytools_2.3-0.orig.tar.gz 86b8f57955c8f6d05bee1d32690b9ade 3404 r-cran-phytools_2.3-0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEc0cUmcxg7Z7ugFlGxb1sjyKV1QIFAmZ96tUSHHBsZXNzeUBk ZWJpYW4ub3JnAAoJEMW9bI8ildUCXjwQAIeb6J7JlmjvZyoNgaeO6OhBR16eQa1S 4Rx2qjMXV7DGrqlc7djkd/Vd+RaevGacRXXcHbC55C/oittkbKLD1ZW/KoGT6WGR 2evIO0cXl0R6gK+OvRm35JhUxh0kePcGDezgcDiPBzp2BbH0f+Gfmj2hRQMHWYtE C77/uyRl1BX83F9ijHDP1AsHmw9zxRr7IOWTxkV2OdQoKdSNe1zUyMrn6lpzmZou CXE/u9sAt5dRQunS+xwbYFc0ZxeR7iaviKrscV1Jsgg+C0sS8nEeSTd6Xea/u3CJ DsHHSdBTtsXURmRgYN9jd2H6sL8kC+aUbQ0683FNyOxdn37eVeLUo5RX8DAdJc+t k6xBRLyXyhim0MRujOHjjmFO2AbI1C6gEAufykH2hgPwhYAcUR8SXA+wMdWa64OR Dp+krrN41Y2q50z7ufjO5qSHvBPGFPJC72XpjmLynCJXMNYhoyJAQqjayi4xW1Fz RYHNgKSRBUCrOMxFOENrnnN/pmQsCEGqEFVws0h6KY2t3P4YTIyeNIz+f5BqxZh0 euNypftypZd2zfPQNdQryd+HSM1tWdAgGPnrZgoAUPeWAwP3x+k3cJwXQDkgA/ux fbkuGwimvJOoG0nIAlu4m+TmtyhJFa7RrW1efk1VN4w6rLG6D+YIKhFETtQL0xdt ARmtIyDvof7R =Lr+1 -----END PGP SIGNATURE----- Thu Nov 28 16:46:11 UTC 2024 I: Checking whether the package is not for us Thu Nov 28 16:46:11 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu Nov 28 16:46:11 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu Nov 28 16:46:11 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Nov 28 16:46:11 UTC 2024 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-TFKxPF' ==================================================================================== Wed Dec 31 23:09:13 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 r-cran-phytools trixie /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx 2.3-0-1" as arguments. Wed Dec 31 23:09:13 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-W0Jfn6E3" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Dec 31 23:09:13 UTC 2025 I: Downloading source for trixie/r-cran-phytools=2.3-0-1 Reading package lists... NOTICE: 'r-cran-phytools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-cran-phytools.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-cran-phytools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 509 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (dsc) [2338 B] Get:2 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (tar) [503 kB] Get:3 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (diff) [3404 B] Fetched 509 kB in 0s (10.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-cran-phytools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-cran-phytools.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-cran-phytools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 509 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (dsc) [2338 B] Get:2 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (tar) [503 kB] Get:3 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (diff) [3404 B] Fetched 509 kB in 0s (10.1 MB/s) Download complete and in download only mode ============================================================================= Building r-cran-phytools in trixie on amd64 on ionos15-amd64 now. Date: Wed Dec 31 23:09:14 UTC 2025 Date UTC: Wed Dec 31 23:09:14 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 31 11:09:16 -12 2025 I: pbuilder-time-stamp: 1767222556 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] tar: ./build: time stamp 2027-02-01 12:10:44 is 34304487.43685712 s in the future tar: ./dev/ptmx: time stamp 2027-02-01 12:09:31 is 34304414.436646288 s in the future tar: ./dev/zero: time stamp 2027-02-01 12:09:31 is 34304414.436531807 s in the future tar: ./dev/null: time stamp 2027-02-01 12:09:31 is 34304414.436459926 s in the future tar: ./dev/console: time stamp 2027-02-01 12:09:31 is 34304414.436379692 s in the future tar: ./dev/random: time stamp 2027-02-01 12:09:31 is 34304414.436325502 s in the future tar: ./dev/full: time stamp 2027-02-01 12:09:31 is 34304414.436271445 s in the future tar: ./dev/pts: time stamp 2027-02-01 12:09:31 is 34304414.436189572 s in the future tar: ./dev/tty: time stamp 2027-02-01 12:09:31 is 34304414.436108521 s in the future tar: ./dev/urandom: time stamp 2027-02-01 12:09:31 is 34304414.436053381 s in the future tar: ./etc/terminfo: time stamp 2027-02-01 12:10:00 is 34304443.435747091 s in the future tar: ./etc/opt: time stamp 2027-02-01 12:09:32 is 34304415.434283456 s in the future tar: ./etc/security/opasswd: time stamp 2027-02-01 12:10:03 is 34304446.433934707 s in the future tar: ./etc/security: time stamp 2027-02-01 12:10:03 is 34304446.433581258 s in the future tar: ./etc/shadow: time stamp 2027-02-01 12:10:54 is 34304497.433354852 s in the future tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2027-02-01 12:12:07 is 34304570.432976912 s in the future tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2027-02-01 12:10:44 is 34304487.432900773 s in the future tar: ./etc/apt/sources.list: time stamp 2027-02-01 12:12:08 is 34304571.432664873 s in the future tar: ./etc/apt/trusted.gpg.d: time stamp 2027-02-01 12:10:30 is 34304473.432126239 s in the future tar: ./etc/apt: time stamp 2027-02-01 12:12:08 is 34304571.432018745 s in the future tar: ./etc/fstab: time stamp 2027-02-01 12:09:31 is 34304414.431959446 s in the future tar: ./etc/ld.so.conf.d: time stamp 2027-02-01 12:11:20 is 34304523.431172283 s in the future tar: ./etc/gshadow: time stamp 2027-02-01 12:10:54 is 34304497.431023905 s in the future tar: ./etc/shells: time stamp 2027-02-01 12:10:00 is 34304443.430940441 s in the future tar: ./etc/default: time stamp 2027-02-01 12:10:54 is 34304497.430603 s in the future tar: ./etc/group: time stamp 2027-02-01 12:10:54 is 34304497.430475927 s in the future tar: ./etc/.pwd.lock: time stamp 2027-02-01 12:10:54 is 34304497.43016468 s in the future tar: ./etc/skel: time stamp 2027-02-01 12:10:01 is 34304444.429960516 s in the future tar: ./etc/group-: time stamp 2027-02-01 12:09:31 is 34304414.429842657 s in the future tar: ./etc/subuid: time stamp 2027-02-01 12:09:31 is 34304414.429791365 s in the future tar: ./etc/pam.d/common-session: time stamp 2027-02-01 12:10:03 is 34304446.429101128 s in the future tar: ./etc/pam.d/common-password: time stamp 2027-02-01 12:10:03 is 34304446.429001305 s in the future tar: ./etc/pam.d/common-account: time stamp 2027-02-01 12:10:03 is 34304446.428919719 s in the future tar: ./etc/pam.d/common-session-noninteractive: time stamp 2027-02-01 12:10:03 is 34304446.428816826 s in the future tar: ./etc/pam.d/common-auth: time stamp 2027-02-01 12:10:03 is 34304446.428724321 s in the future tar: ./etc/pam.d: time stamp 2027-02-01 12:10:54 is 34304497.428503441 s in the future tar: ./etc/subgid: time stamp 2027-02-01 12:09:31 is 34304414.428394767 s in the future tar: ./etc/passwd-: time stamp 2027-02-01 12:09:31 is 34304414.428293135 s in the future tar: ./etc/environment: time stamp 2027-02-01 12:10:03 is 34304446.428176641 s in the future tar: ./etc/perl/Net: time stamp 2027-02-01 12:10:34 is 34304477.428012637 s in the future tar: ./etc/perl: time stamp 2027-02-01 12:10:29 is 34304472.427981005 s in the future tar: ./etc/selinux: time stamp 2027-02-01 12:10:53 is 34304496.427806764 s in the future tar: ./etc/kernel: time stamp 2027-02-01 12:10:06 is 34304449.42765861 s in the future tar: ./etc/passwd: time stamp 2027-02-01 12:10:54 is 34304497.427589219 s in the future tar: ./etc/dpkg/origins/default: time stamp 2027-02-01 12:09:32 is 34304415.427410396 s in the future tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2027-02-01 12:12:08 is 34304571.427128136 s in the future tar: ./etc/dpkg/dpkg.cfg.d: time stamp 2027-02-01 12:12:08 is 34304571.427089489 s in the future tar: ./etc/dpkg: time stamp 2027-02-01 12:10:37 is 34304480.427055696 s in the future tar: ./media: time stamp 2027-02-01 12:09:32 is 34304415.426819175 s in the future tar: ./mnt: time stamp 2027-02-01 12:09:32 is 34304415.426719346 s in the future tar: ./opt: time stamp 2027-02-01 12:09:32 is 34304415.426631854 s in the future tar: ./root: time stamp 2027-02-01 12:09:32 is 34304415.426405288 s in the future tar: ./run/lock: time stamp 2027-02-01 12:09:32 is 34304415.426271241 s in the future tar: ./srv: time stamp 2027-02-01 12:09:32 is 34304415.426156215 s in the future tar: ./usr/share/base-passwd: time stamp 2027-02-01 12:09:42 is 34304425.425816207 s in the future tar: ./usr/share/terminfo/a: time stamp 2027-02-01 12:09:57 is 34304440.425647281 s in the future tar: ./usr/share/terminfo/p: time stamp 2027-02-01 12:09:57 is 34304440.425527502 s in the future tar: ./usr/share/terminfo/E: time stamp 2027-02-01 12:09:57 is 34304440.425373865 s in the future tar: ./usr/share/terminfo/s: time stamp 2027-02-01 12:09:57 is 34304440.424934384 s in the future tar: ./usr/share/terminfo/h: time stamp 2027-02-01 12:09:57 is 34304440.424804834 s in the future tar: ./usr/share/terminfo/d: time stamp 2027-02-01 12:09:57 is 34304440.424689836 s in the future tar: ./usr/share/terminfo/l: time stamp 2027-02-01 12:09:57 is 34304440.424564126 s in the future tar: ./usr/share/terminfo/m: time stamp 2027-02-01 12:09:57 is 34304440.424326426 s in the future tar: ./usr/share/terminfo/c: time stamp 2027-02-01 12:09:57 is 34304440.424177297 s in the future tar: ./usr/share/terminfo/v: time stamp 2027-02-01 12:09:57 is 34304440.423977456 s in the future tar: ./usr/share/terminfo/w: time stamp 2027-02-01 12:09:57 is 34304440.423809058 s in the future tar: ./usr/share/terminfo/x: time stamp 2027-02-01 12:09:57 is 34304440.423393626 s in the future tar: ./usr/share/terminfo/t: time stamp 2027-02-01 12:09:57 is 34304440.423233464 s in the future tar: ./usr/share/terminfo/r: time stamp 2027-02-01 12:09:57 is 34304440.422930994 s in the future tar: ./usr/share/gdb/auto-load/usr/lib/x86_64-linux-gnu: time stamp 2027-02-01 12:10:27 is 34304470.422486006 s in the future tar: ./usr/share/gdb/auto-load/usr/lib: time stamp 2027-02-01 12:10:24 is 34304467.422446722 s in the future tar: ./usr/share/gdb/auto-load/usr: time stamp 2027-02-01 12:10:24 is 34304467.42242164 s in the future tar: ./usr/share/gdb/auto-load/lib/x86_64-linux-gnu: time stamp 2027-02-01 12:10:21 is 34304464.422231223 s in the future tar: ./usr/share/gdb/auto-load/lib: time stamp 2027-02-01 12:10:21 is 34304464.422197447 s in the future tar: ./usr/share/gdb/auto-load: time stamp 2027-02-01 12:10:24 is 34304467.422174577 s in the future tar: ./usr/share/gdb: time stamp 2027-02-01 12:10:21 is 34304464.422153583 s in the future tar: ./usr/share/info: time stamp 2027-02-01 12:09:59 is 34304442.418260146 s in the future tar: ./usr/share/build-essential: time stamp 2027-02-01 12:10:11 is 34304454.418032657 s in the future tar: ./usr/share/libc-bin: time stamp 2027-02-01 12:09:51 is 34304434.417908436 s in the future tar: ./usr/share/zsh/vendor-completions: time stamp 2027-02-01 12:10:16 is 34304459.417749521 s in the future tar: ./usr/share/zsh: time stamp 2027-02-01 12:10:16 is 34304459.417716462 s in the future tar: ./usr/share/libgcrypt20: time stamp 2027-02-01 12:10:23 is 34304466.417575518 s in the future tar: ./usr/share/man/fr/man7: time stamp 2027-02-01 12:10:16 is 34304459.417428158 s in the future tar: ./usr/share/man/fi/man1: time stamp 2027-02-01 12:10:53 is 34304496.411406375 s in the future tar: ./usr/share/man/id/man8: time stamp 2027-02-01 12:10:53 is 34304496.41077894 s in the future tar: ./usr/share/man/id/man1: time stamp 2027-02-01 12:10:53 is 34304496.410632172 s in the future tar: ./usr/share/man/id: time stamp 2027-02-01 12:10:53 is 34304496.410598461 s in the future tar: ./usr/share/man/uk/man8: time stamp 2027-02-01 12:10:53 is 34304496.409831396 s in the future tar: ./usr/share/man/uk/man1: time stamp 2027-02-01 12:10:53 is 34304496.409164961 s in the future tar: ./usr/share/man/uk/man5: time stamp 2027-02-01 12:10:53 is 34304496.408904664 s in the future tar: ./usr/share/man/uk: time stamp 2027-02-01 12:10:53 is 34304496.408870754 s in the future tar: ./usr/share/man/pt: time stamp 2027-02-01 12:10:07 is 34304450.404359502 s in the future tar: ./usr/share/man/nl: time stamp 2027-02-01 12:10:07 is 34304450.399719684 s in the future tar: ./usr/share/man/zh_CN/man8: time stamp 2027-02-01 12:10:53 is 34304496.398885148 s in the future tar: ./usr/share/man/zh_CN/man1: time stamp 2027-02-01 12:10:53 is 34304496.398522674 s in the future tar: ./usr/share/man/zh_CN/man5: time stamp 2027-02-01 12:10:53 is 34304496.398254097 s in the future tar: ./usr/share/man/zh_CN: time stamp 2027-02-01 12:10:53 is 34304496.398215699 s in the future tar: ./usr/share/man/tr/man8: time stamp 2027-02-01 12:10:53 is 34304496.397844499 s in the future tar: ./usr/share/man/tr/man1: time stamp 2027-02-01 12:10:53 is 34304496.397640114 s in the future tar: ./usr/share/man/tr/man5: time stamp 2027-02-01 12:10:53 is 34304496.397469885 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time stamp 2027-02-01 12:09:28 is 34304403.493228373 s in the future tar: ./usr/share/man/gl/man8: time stamp 2027-02-01 12:11:21 is 34304516.493209404 s in the future tar: ./usr/share/man/gl: time stamp 2027-02-01 12:10:54 is 34304489.493191908 s in the future tar: ./usr/share/man/pl/man1: time stamp 2027-02-01 12:10:53 is 34304488.49317144 s in the future tar: ./usr/share/man/pl: time stamp 2027-02-01 12:09:28 is 34304403.49313793 s in the future tar: ./usr/share/man/de: time stamp 2027-02-01 12:10:07 is 34304442.49305722 s in the future tar: ./usr/share/man/es/man1: time stamp 2027-02-01 12:11:20 is 34304515.493036406 s in the future tar: ./usr/share/man/es: time stamp 2027-02-01 12:09:28 is 34304403.493003868 s in the future tar: ./usr/share/man/sv/man1: time stamp 2027-02-01 12:11:20 is 34304515.492983843 s in the future tar: ./usr/share/man/sv: time stamp 2027-02-01 12:10:16 is 34304451.492964648 s in the future tar: ./usr/share/man/fi/man8: time stamp 2027-02-01 12:11:21 is 34304516.492930785 s in the future tar: ./usr/share/man/fi: time stamp 2027-02-01 12:10:54 is 34304489.492913038 s in the future tar: ./usr/share/man/fr: time stamp 2027-02-01 12:10:15 is 34304450.492862622 s in the future tar: ./usr/share/man: time stamp 2027-02-01 12:10:54 is 34304489.492844688 s in the future tar: ./usr/share: time stamp 2027-02-01 12:10:55 is 34304490.49282631 s in the future tar: ./usr: time stamp 2027-02-01 12:09:32 is 34304407.492809131 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2027-02-01 12:10:36 is 34304471.492772884 s in the future tar: ./etc/systemd/system: time stamp 2027-02-01 12:09:33 is 34304408.492752715 s in the future tar: ./etc/alternatives: time stamp 2027-02-01 12:11:21 is 34304516.492720541 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-cran-phytools_2.3-0-1.dsc] I: copying [./r-cran-phytools_2.3-0.orig.tar.gz] I: copying [./r-cran-phytools_2.3-0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jun 27 22:42:29 2024 gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 gpgv: issuer "plessy@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-phytools_2.3-0-1.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-phytools in r-cran-phytools-2.3-0 dpkg-source: info: unpacking r-cran-phytools_2.3-0.orig.tar.gz dpkg-source: info: unpacking r-cran-phytools_2.3-0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1625689/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7d33abd750034a629d9f7ec098c86ea1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1625689' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/pbuilderrc_UVmF --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b1 --logfile b1/build.log r-cran-phytools_2.3-0-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1625689/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-ape (>= 5.7), r-cran-maps, r-cran-clustergeneration, r-cran-coda, r-cran-combinat, r-cran-deoptim, r-cran-doparallel, r-cran-expm, r-cran-foreach, r-cran-mass, r-cran-mnormt, r-cran-nlme, r-cran-numderiv, r-cran-optimparallel, r-cran-phangorn, r-cran-scatterplot3d dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ape (>= 5.7); however: Package r-cran-ape is not installed. pbuilder-satisfydepends-dummy depends on r-cran-maps; however: Package r-cran-maps is not installed. pbuilder-satisfydepends-dummy depends on r-cran-clustergeneration; however: Package r-cran-clustergeneration is not installed. pbuilder-satisfydepends-dummy depends on r-cran-coda; however: Package r-cran-coda is not installed. pbuilder-satisfydepends-dummy depends on r-cran-combinat; however: Package r-cran-combinat is not installed. pbuilder-satisfydepends-dummy depends on r-cran-deoptim; however: Package r-cran-deoptim is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-expm; however: Package r-cran-expm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mass; however: Package r-cran-mass is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mnormt; however: Package r-cran-mnormt is not installed. pbuilder-satisfydepends-dummy depends on r-cran-nlme; however: Package r-cran-nlme is not installed. pbuilder-satisfydepends-dummy depends on r-cran-numderiv; however: Package r-cran-numderiv is not installed. pbuilder-satisfydepends-dummy depends on r-cran-optimparallel; however: Package r-cran-optimparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-phangorn; however: Package r-cran-phangorn is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scatterplot3d; however: Package r-cran-scatterplot3d is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libamd3{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcolamd3{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libglpk40{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libltdl7{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsuitesparseconfig7{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-ape{a} r-cran-cli{a} r-cran-clustergeneration{a} r-cran-coda{a} r-cran-codetools{a} r-cran-combinat{a} r-cran-cpp11{a} r-cran-deoptim{a} r-cran-digest{a} r-cran-doparallel{a} r-cran-expm{a} r-cran-fastmatch{a} r-cran-foreach{a} r-cran-generics{a} r-cran-glue{a} r-cran-igraph{a} r-cran-iterators{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-maps{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mnormt{a} r-cran-nlme{a} r-cran-numderiv{a} r-cran-optimparallel{a} r-cran-phangorn{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-quadprog{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-scatterplot3d{a} r-cran-vctrs{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-graph r-cran-bench r-cran-bit64 r-cran-brio r-cran-callr r-cran-caret r-cran-covr r-cran-crayon r-cran-dbi r-cran-decor r-cran-desc r-cran-dplyr r-cran-fs r-cran-ggplot2 r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lbfgsb3c r-cran-lintr r-cran-lobstr r-cran-mlbench r-cran-mockery r-cran-pillar r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-progress r-cran-ps r-cran-rcolorbrewer r-cran-rgl r-cran-rmarkdown r-cran-rmpfr r-cran-roxygen2 r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-scales r-cran-sfsmisc r-cran-spam r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-tinytest r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-whoami r-cran-withr r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 227 newly installed, 0 to remove and 0 not upgraded. Need to get 135 MB of archives. After unpacking 379 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-14 [233 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B] Get: 40 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 65 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get: 109 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 111 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 112 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libncurses-dev amd64 6.5-2+b1 [351 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libreadline-dev amd64 8.2-5 [153 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.44-4 [261 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libpcre2-32-0 amd64 10.44-4 [248 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libpcre2-posix3 amd64 10.44-4 [60.3 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libpcre2-dev amd64 10.44-4 [790 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libpng-dev amd64 1.6.44-2 [366 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 r-base-dev all 4.4.2-1 [4516 B] Get: 137 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian trixie/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian trixie/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian trixie/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-8 [393 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 r-cran-littler amd64 0.3.20-1 [102 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 littler all 0.3.20-1 [16.0 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 r-cran-nlme amd64 3.1.166-1 [2330 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 r-cran-rcpp amd64 1.0.13-1-1 [2074 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 r-cran-ape amd64 5.8-1 [2920 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 r-cran-mass amd64 7.3-61-1 [1112 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 r-cran-clustergeneration all 1.3.8-1 [267 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 r-cran-coda all 0.19-4.1-1 [329 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 r-cran-combinat all 0.0-8-7 [42.8 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 r-cran-deoptim amd64 2.2-8-1 [120 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 r-cran-iterators all 1.0.14-1 [337 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 r-cran-foreach all 1.5.2-1 [122 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 r-cran-doparallel all 1.0.17-1 [188 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 r-cran-expm amd64 1.0-0-1 [228 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 r-cran-fastmatch amd64 1.1-4-1 [34.1 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 r-cran-igraph amd64 2.0.3-1 [5037 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 r-cran-maps amd64 3.4.2-1 [2012 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 r-cran-mnormt amd64 2.1.1-2 [171 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 r-cran-optimparallel all 1.0-2-2 [206 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 r-cran-quadprog amd64 1.5-8-1+b1 [33.6 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 r-cran-phangorn amd64 2.11.1+dfsg-1 [1679 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 r-cran-scatterplot3d all 0.3-44-1 [353 kB] Fetched 135 MB in 4s (37.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../020-dctrl-tools_2.24-3+b1_amd64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../027-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../029-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-14_amd64.deb ... Unpacking zip (3.0-14) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28_amd64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../037-libpaper1_1.1.29+b2_amd64.deb ... Unpacking libpaper1:amd64 (1.1.29+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29+b2_amd64.deb ... Unpacking libpaper-utils (1.1.29+b2) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../040-libblas3_3.12.0-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-4) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../041-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../042-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../043-libpng16-16t64_1.6.44-2_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../044-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../045-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../091-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../098-libxft2_2.3.6-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b2_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../101-libtk8.6_8.6.15-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.15-1) ... Selecting previously unselected package libice6:amd64. 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Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Dec 31 23:10:37 UTC 2025. Universal Time is now: Wed Dec 31 23:10:37 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14) ... Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b4) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:amd64 (10.44-4) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.10-2) ... 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Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:amd64 (5.6.3-1+b1) ... Setting up libsub-name-perl:amd64 (0.27-1+b3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpcre2-posix3:amd64 (10.44-4) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libngtcp2-16:amd64 (1.6.0-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.3.2-2) ... Setting up libdeflate-dev:amd64 (1.22-1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:amd64 (72.1-5+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b3) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up libblas-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-8) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libpcre2-dev:amd64 (10.44-4) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libpng-dev:amd64 (1.6.44-2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libglpk40:amd64 (5.0-1+b2) ... Setting up liblapack-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1) ... Setting up groff-base (1.23.0-5) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:amd64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ... Setting up libwww-curl-perl:amd64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:amd64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-fastmatch (1.1-4-1) ... Setting up r-cran-lattice (0.22-6-1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-numderiv (2016.8-1.1-3) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-coda (0.19-4.1-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-deoptim (2.2-8-1) ... Setting up r-cran-quadprog (1.5-8-1+b1) ... Setting up r-cran-littler (0.3.20-1) ... Setting up r-cran-rcpp (1.0.13-1-1) ... Setting up r-cran-optimparallel (1.0-2-2) ... Setting up r-cran-combinat (0.0-8-7) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-maps (3.4.2-1) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up r-base-dev (4.4.2-1) ... Setting up littler (0.3.20-1) ... Setting up libmoose-perl:amd64 (2.2207-1+b2) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-ape (5.8-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-mass (7.3-61-1) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-mnormt (2.1.1-2) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-scatterplot3d (0.3-44-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-doparallel (1.0.17-1) ... Setting up r-cran-clustergeneration (1.3.8-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-igraph (2.0.3-1) ... Setting up r-cran-expm (1.0-0-1) ... Setting up r-cran-phangorn (2.11.1+dfsg-1) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-cran-phytools-2.3-0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-cran-phytools_2.3-0-1_source.changes dpkg-buildpackage: info: source package r-cran-phytools dpkg-buildpackage: info: source version 2.3-0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Charles Plessy dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-phytools/ -O--buildsystem=R I: R Package: phytools Version: 2.3-0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 28 Jun 2024 07:40:30 +0900 mkdir -p /build/reproducible-path/r-cran-phytools-2.3-0/debian/r-cran-phytools/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-cran-phytools-2.3-0/debian/r-cran-phytools/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 28 Jun 2024 07:40:30 +0900'" * installing *source* package 'phytools' ... ** package 'phytools' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phytools) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-ape for Depends:ape (>= 5.7) I: Using r-cran-maps for Depends:maps I: Using r-cran-animation for Suggests:animation W: Cannot find a debian package for Suggests:geiger I: Using r-cran-plotrix for Suggests:plotrix I: Using r-cran-rcolorbrewer by changing version to for Suggests:RColorBrewer I: Using r-cran-rgl for Suggests:rgl I: Using r-cran-clustergeneration for Imports:clusterGeneration I: Using r-cran-coda for Imports:coda I: Using r-cran-combinat for Imports:combinat I: Using r-cran-deoptim for Imports:DEoptim I: Using r-cran-doparallel for Imports:doParallel I: Using r-cran-expm for Imports:expm I: Using r-cran-foreach for Imports:foreach I: Using r-cran-mass for Imports:MASS I: Using r-cran-mnormt for Imports:mnormt I: Using r-cran-nlme for Imports:nlme I: Using r-cran-numderiv for Imports:numDeriv I: Using r-cran-optimparallel for Imports:optimParallel I: Using r-cran-phangorn for Imports:phangorn (>= 2.3.1) I: Using r-cran-scatterplot3d for Imports:scatterplot3d I: Use r-cran-phytools as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-phytools' in '../r-cran-phytools_2.3-0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-phytools_2.3-0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-cran-phytools_2.3-0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1625689 and its subdirectories I: Current time: Wed Dec 31 11:11:51 -12 2025 I: pbuilder-time-stamp: 1767222711 Wed Dec 31 23:11:51 UTC 2025 I: Signing ./b1/r-cran-phytools_2.3-0-1_amd64.buildinfo as r-cran-phytools_2.3-0-1_amd64.buildinfo.asc Wed Dec 31 23:11:51 UTC 2025 I: Signed ./b1/r-cran-phytools_2.3-0-1_amd64.buildinfo as ./b1/r-cran-phytools_2.3-0-1_amd64.buildinfo.asc Wed Dec 31 23:11:51 UTC 2025 - build #1 for r-cran-phytools/trixie/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Wed Dec 31 23:11:51 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-W0Jfn6E3, removing. /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 28 16:48 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 28 16:46 b2 -rw-r--r-- 1 jenkins jenkins 2338 Jun 27 22:52 r-cran-phytools_2.3-0-1.dsc -rw------- 1 jenkins jenkins 3492 Nov 28 16:46 rbuildlog.86QfBxL /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b1: total 3552 -rw-r--r-- 1 jenkins jenkins 353624 Nov 28 16:48 build.log -rw-r--r-- 1 jenkins jenkins 3404 Nov 28 16:48 r-cran-phytools_2.3-0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2338 Nov 28 16:48 r-cran-phytools_2.3-0-1.dsc -rw-r--r-- 1 jenkins jenkins 2732668 Nov 28 16:48 r-cran-phytools_2.3-0-1_all.deb -rw-r--r-- 1 jenkins jenkins 11087 Nov 28 16:48 r-cran-phytools_2.3-0-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 11969 Nov 28 16:48 r-cran-phytools_2.3-0-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1205 Nov 28 16:48 r-cran-phytools_2.3-0-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1648 Nov 28 16:48 r-cran-phytools_2.3-0-1_source.changes -rw-r--r-- 1 jenkins jenkins 502936 Nov 28 16:48 r-cran-phytools_2.3-0.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b2: total 0 Thu Nov 28 16:48:52 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 31 11:09:16 -12 2025 I: pbuilder-time-stamp: 1767222556 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] tar: ./build: time stamp 2027-02-01 12:10:44 is 34304487.43685712 s in the future tar: ./dev/ptmx: time stamp 2027-02-01 12:09:31 is 34304414.436646288 s in the future tar: ./dev/zero: time stamp 2027-02-01 12:09:31 is 34304414.436531807 s in the future tar: ./dev/null: time stamp 2027-02-01 12:09:31 is 34304414.436459926 s in the future tar: ./dev/console: time stamp 2027-02-01 12:09:31 is 34304414.436379692 s in the future tar: ./dev/random: time stamp 2027-02-01 12:09:31 is 34304414.436325502 s in the future tar: ./dev/full: time stamp 2027-02-01 12:09:31 is 34304414.436271445 s in the future tar: ./dev/pts: time stamp 2027-02-01 12:09:31 is 34304414.436189572 s in the future tar: ./dev/tty: time stamp 2027-02-01 12:09:31 is 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s in the future tar: ./usr/include/x86_64-linux-gnux32/asm: time stamp 2027-02-01 12:10:29 is 34304464.496967901 s in the future tar: ./usr/include/x86_64-linux-gnux32: time stamp 2027-02-01 12:10:28 is 34304463.496930806 s in the future tar: ./usr/include/riscv64-linux-gnu/asm: time stamp 2027-02-01 12:10:29 is 34304464.496896213 s in the future tar: ./usr/include/riscv64-linux-gnu: time stamp 2027-02-01 12:10:28 is 34304463.496859629 s in the future tar: ./usr/include/alpha-linux-gnu/asm: time stamp 2027-02-01 12:10:29 is 34304464.496824874 s in the future tar: ./usr/include/alpha-linux-gnu: time stamp 2027-02-01 12:10:28 is 34304463.496788261 s in the future tar: ./usr/include/powerpc64-linux-gnu/asm: time stamp 2027-02-01 12:10:29 is 34304464.496753025 s in the future tar: ./usr/include/powerpc64-linux-gnu: time stamp 2027-02-01 12:10:28 is 34304463.496711426 s in the future tar: ./usr/include/aarch64-linux-gnu/asm: time stamp 2027-02-01 12:10:29 is 34304464.496674628 s in the 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future tar: ./usr/share/man/pl: time stamp 2027-02-01 12:09:28 is 34304403.49313793 s in the future tar: ./usr/share/man/de: time stamp 2027-02-01 12:10:07 is 34304442.49305722 s in the future tar: ./usr/share/man/es/man1: time stamp 2027-02-01 12:11:20 is 34304515.493036406 s in the future tar: ./usr/share/man/es: time stamp 2027-02-01 12:09:28 is 34304403.493003868 s in the future tar: ./usr/share/man/sv/man1: time stamp 2027-02-01 12:11:20 is 34304515.492983843 s in the future tar: ./usr/share/man/sv: time stamp 2027-02-01 12:10:16 is 34304451.492964648 s in the future tar: ./usr/share/man/fi/man8: time stamp 2027-02-01 12:11:21 is 34304516.492930785 s in the future tar: ./usr/share/man/fi: time stamp 2027-02-01 12:10:54 is 34304489.492913038 s in the future tar: ./usr/share/man/fr: time stamp 2027-02-01 12:10:15 is 34304450.492862622 s in the future tar: ./usr/share/man: time stamp 2027-02-01 12:10:54 is 34304489.492844688 s in the future tar: ./usr/share: time stamp 2027-02-01 12:10:55 is 34304490.49282631 s in the future tar: ./usr: time stamp 2027-02-01 12:09:32 is 34304407.492809131 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2027-02-01 12:10:36 is 34304471.492772884 s in the future tar: ./etc/systemd/system: time stamp 2027-02-01 12:09:33 is 34304408.492752715 s in the future tar: ./etc/alternatives: time stamp 2027-02-01 12:11:21 is 34304516.492720541 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-cran-phytools_2.3-0-1.dsc] I: copying [./r-cran-phytools_2.3-0.orig.tar.gz] I: copying [./r-cran-phytools_2.3-0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jun 27 22:42:29 2024 gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 gpgv: issuer "plessy@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-phytools_2.3-0-1.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-phytools in r-cran-phytools-2.3-0 dpkg-source: info: unpacking r-cran-phytools_2.3-0.orig.tar.gz dpkg-source: info: unpacking r-cran-phytools_2.3-0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1625689/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7d33abd750034a629d9f7ec098c86ea1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1625689' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/pbuilderrc_UVmF --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b1 --logfile b1/build.log r-cran-phytools_2.3-0-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1625689/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-ape (>= 5.7), r-cran-maps, r-cran-clustergeneration, r-cran-coda, r-cran-combinat, r-cran-deoptim, r-cran-doparallel, r-cran-expm, r-cran-foreach, r-cran-mass, r-cran-mnormt, r-cran-nlme, r-cran-numderiv, r-cran-optimparallel, r-cran-phangorn, r-cran-scatterplot3d dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ape (>= 5.7); however: Package r-cran-ape is not installed. pbuilder-satisfydepends-dummy depends on r-cran-maps; however: Package r-cran-maps is not installed. pbuilder-satisfydepends-dummy depends on r-cran-clustergeneration; however: Package r-cran-clustergeneration is not installed. pbuilder-satisfydepends-dummy depends on r-cran-coda; however: Package r-cran-coda is not installed. pbuilder-satisfydepends-dummy depends on r-cran-combinat; however: Package r-cran-combinat is not installed. pbuilder-satisfydepends-dummy depends on r-cran-deoptim; however: Package r-cran-deoptim is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-expm; however: Package r-cran-expm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mass; however: Package r-cran-mass is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mnormt; however: Package r-cran-mnormt is not installed. pbuilder-satisfydepends-dummy depends on r-cran-nlme; however: Package r-cran-nlme is not installed. pbuilder-satisfydepends-dummy depends on r-cran-numderiv; however: Package r-cran-numderiv is not installed. pbuilder-satisfydepends-dummy depends on r-cran-optimparallel; however: Package r-cran-optimparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-phangorn; however: Package r-cran-phangorn is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scatterplot3d; however: Package r-cran-scatterplot3d is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libamd3{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcolamd3{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libglpk40{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libltdl7{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsuitesparseconfig7{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-ape{a} r-cran-cli{a} r-cran-clustergeneration{a} r-cran-coda{a} r-cran-codetools{a} r-cran-combinat{a} r-cran-cpp11{a} r-cran-deoptim{a} r-cran-digest{a} r-cran-doparallel{a} r-cran-expm{a} r-cran-fastmatch{a} r-cran-foreach{a} r-cran-generics{a} r-cran-glue{a} r-cran-igraph{a} r-cran-iterators{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-maps{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mnormt{a} r-cran-nlme{a} r-cran-numderiv{a} r-cran-optimparallel{a} r-cran-phangorn{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-quadprog{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-scatterplot3d{a} r-cran-vctrs{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-graph r-cran-bench r-cran-bit64 r-cran-brio r-cran-callr r-cran-caret r-cran-covr r-cran-crayon r-cran-dbi r-cran-decor r-cran-desc r-cran-dplyr r-cran-fs r-cran-ggplot2 r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lbfgsb3c r-cran-lintr r-cran-lobstr r-cran-mlbench r-cran-mockery r-cran-pillar r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-progress r-cran-ps r-cran-rcolorbrewer r-cran-rgl r-cran-rmarkdown r-cran-rmpfr r-cran-roxygen2 r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-scales r-cran-sfsmisc r-cran-spam r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-tinytest r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-whoami r-cran-withr r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 227 newly installed, 0 to remove and 0 not upgraded. Need to get 135 MB of archives. After unpacking 379 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-14 [233 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B] Get: 40 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 65 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get: 109 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 111 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 112 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libncurses-dev amd64 6.5-2+b1 [351 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libreadline-dev amd64 8.2-5 [153 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.44-4 [261 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libpcre2-32-0 amd64 10.44-4 [248 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libpcre2-posix3 amd64 10.44-4 [60.3 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libpcre2-dev amd64 10.44-4 [790 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libpng-dev amd64 1.6.44-2 [366 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 r-base-dev all 4.4.2-1 [4516 B] Get: 137 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian trixie/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian trixie/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian trixie/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-8 [393 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 r-cran-littler amd64 0.3.20-1 [102 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 littler all 0.3.20-1 [16.0 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 r-cran-nlme amd64 3.1.166-1 [2330 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 r-cran-rcpp amd64 1.0.13-1-1 [2074 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 r-cran-ape amd64 5.8-1 [2920 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 r-cran-mass amd64 7.3-61-1 [1112 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 r-cran-clustergeneration all 1.3.8-1 [267 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 r-cran-coda all 0.19-4.1-1 [329 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 r-cran-combinat all 0.0-8-7 [42.8 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 r-cran-deoptim amd64 2.2-8-1 [120 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 r-cran-iterators all 1.0.14-1 [337 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 r-cran-foreach all 1.5.2-1 [122 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 r-cran-doparallel all 1.0.17-1 [188 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 r-cran-expm amd64 1.0-0-1 [228 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 r-cran-fastmatch amd64 1.1-4-1 [34.1 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 r-cran-igraph amd64 2.0.3-1 [5037 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 r-cran-maps amd64 3.4.2-1 [2012 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 r-cran-mnormt amd64 2.1.1-2 [171 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 r-cran-optimparallel all 1.0-2-2 [206 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 r-cran-quadprog amd64 1.5-8-1+b1 [33.6 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 r-cran-phangorn amd64 2.11.1+dfsg-1 [1679 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 r-cran-scatterplot3d all 0.3-44-1 [353 kB] Fetched 135 MB in 4s (37.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../091-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../098-libxft2_2.3.6-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b2_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../101-libtk8.6_8.6.15-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.15-1) ... Selecting previously unselected package libice6:amd64. 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Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Dec 31 23:10:37 UTC 2025. Universal Time is now: Wed Dec 31 23:10:37 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14) ... Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b4) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:amd64 (10.44-4) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.10-2) ... 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Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libpcre2-dev:amd64 (10.44-4) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libpng-dev:amd64 (1.6.44-2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libglpk40:amd64 (5.0-1+b2) ... Setting up liblapack-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1) ... Setting up groff-base (1.23.0-5) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:amd64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ... Setting up libwww-curl-perl:amd64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:amd64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-fastmatch (1.1-4-1) ... Setting up r-cran-lattice (0.22-6-1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-numderiv (2016.8-1.1-3) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-coda (0.19-4.1-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-deoptim (2.2-8-1) ... Setting up r-cran-quadprog (1.5-8-1+b1) ... Setting up r-cran-littler (0.3.20-1) ... Setting up r-cran-rcpp (1.0.13-1-1) ... Setting up r-cran-optimparallel (1.0-2-2) ... Setting up r-cran-combinat (0.0-8-7) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-maps (3.4.2-1) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up r-base-dev (4.4.2-1) ... Setting up littler (0.3.20-1) ... Setting up libmoose-perl:amd64 (2.2207-1+b2) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-ape (5.8-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-mass (7.3-61-1) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-mnormt (2.1.1-2) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-scatterplot3d (0.3-44-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-doparallel (1.0.17-1) ... Setting up r-cran-clustergeneration (1.3.8-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-igraph (2.0.3-1) ... Setting up r-cran-expm (1.0-0-1) ... Setting up r-cran-phangorn (2.11.1+dfsg-1) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-cran-phytools-2.3-0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-cran-phytools_2.3-0-1_source.changes dpkg-buildpackage: info: source package r-cran-phytools dpkg-buildpackage: info: source version 2.3-0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Charles Plessy dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-phytools/ -O--buildsystem=R I: R Package: phytools Version: 2.3-0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 28 Jun 2024 07:40:30 +0900 mkdir -p /build/reproducible-path/r-cran-phytools-2.3-0/debian/r-cran-phytools/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-cran-phytools-2.3-0/debian/r-cran-phytools/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 28 Jun 2024 07:40:30 +0900'" * installing *source* package 'phytools' ... ** package 'phytools' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phytools) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-ape for Depends:ape (>= 5.7) I: Using r-cran-maps for Depends:maps I: Using r-cran-animation for Suggests:animation W: Cannot find a debian package for Suggests:geiger I: Using r-cran-plotrix for Suggests:plotrix I: Using r-cran-rcolorbrewer by changing version to for Suggests:RColorBrewer I: Using r-cran-rgl for Suggests:rgl I: Using r-cran-clustergeneration for Imports:clusterGeneration I: Using r-cran-coda for Imports:coda I: Using r-cran-combinat for Imports:combinat I: Using r-cran-deoptim for Imports:DEoptim I: Using r-cran-doparallel for Imports:doParallel I: Using r-cran-expm for Imports:expm I: Using r-cran-foreach for Imports:foreach I: Using r-cran-mass for Imports:MASS I: Using r-cran-mnormt for Imports:mnormt I: Using r-cran-nlme for Imports:nlme I: Using r-cran-numderiv for Imports:numDeriv I: Using r-cran-optimparallel for Imports:optimParallel I: Using r-cran-phangorn for Imports:phangorn (>= 2.3.1) I: Using r-cran-scatterplot3d for Imports:scatterplot3d I: Use r-cran-phytools as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-phytools' in '../r-cran-phytools_2.3-0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-phytools_2.3-0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-cran-phytools_2.3-0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1625689 and its subdirectories I: Current time: Wed Dec 31 11:11:51 -12 2025 I: pbuilder-time-stamp: 1767222711 Thu Nov 28 16:48:52 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Nov 28 16:48:52 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Nov 28 16:48:52 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Nov 28 16:48:52 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ydJoVO' ==================================================================================== Thu Nov 28 16:48:53 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 r-cran-phytools trixie /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx 2.3-0-1" as arguments. Thu Nov 28 16:48:53 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Qas7ubP0" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 28 16:48:53 UTC 2024 I: Downloading source for trixie/r-cran-phytools=2.3-0-1 Reading package lists... NOTICE: 'r-cran-phytools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-cran-phytools.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-cran-phytools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 509 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (dsc) [2338 B] Get:2 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (tar) [503 kB] Get:3 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (diff) [3404 B] Fetched 509 kB in 0s (7068 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-cran-phytools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-cran-phytools.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-cran-phytools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 509 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (dsc) [2338 B] Get:2 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (tar) [503 kB] Get:3 http://deb.debian.org/debian trixie/main r-cran-phytools 2.3-0-1 (diff) [3404 B] Fetched 509 kB in 0s (7068 kB/s) Download complete and in download only mode ============================================================================= Re-Building r-cran-phytools in trixie on amd64 on ionos11-amd64 now. Date: Thu Nov 28 16:48:54 UTC 2024 Date UTC: Thu Nov 28 16:48:54 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/pbuilderrc_vjgB + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' r-cran-phytools = debian-installer -o r-cran-phytools = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' r-cran-phytools = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/pbuilderrc_vjgB --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b2 --logfile b2/build.log r-cran-phytools_2.3-0-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 29 06:48:54 +14 2024 I: pbuilder-time-stamp: 1732812534 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-cran-phytools_2.3-0-1.dsc] I: copying [./r-cran-phytools_2.3-0.orig.tar.gz] I: copying [./r-cran-phytools_2.3-0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jun 27 22:42:29 2024 gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 gpgv: issuer "plessy@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-phytools_2.3-0-1.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-phytools in r-cran-phytools-2.3-0 dpkg-source: info: unpacking r-cran-phytools_2.3-0.orig.tar.gz dpkg-source: info: unpacking r-cran-phytools_2.3-0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 28 16:49 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=079ef764d1de4f09b111bef955b763b9 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1062865 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/pbuilderrc_vjgB --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b2 --logfile b2/build.log r-cran-phytools_2.3-0-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-ape (>= 5.7), r-cran-maps, r-cran-clustergeneration, r-cran-coda, r-cran-combinat, r-cran-deoptim, r-cran-doparallel, r-cran-expm, r-cran-foreach, r-cran-mass, r-cran-mnormt, r-cran-nlme, r-cran-numderiv, r-cran-optimparallel, r-cran-phangorn, r-cran-scatterplot3d dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ape (>= 5.7); however: Package r-cran-ape is not installed. pbuilder-satisfydepends-dummy depends on r-cran-maps; however: Package r-cran-maps is not installed. pbuilder-satisfydepends-dummy depends on r-cran-clustergeneration; however: Package r-cran-clustergeneration is not installed. pbuilder-satisfydepends-dummy depends on r-cran-coda; however: Package r-cran-coda is not installed. pbuilder-satisfydepends-dummy depends on r-cran-combinat; however: Package r-cran-combinat is not installed. pbuilder-satisfydepends-dummy depends on r-cran-deoptim; however: Package r-cran-deoptim is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-expm; however: Package r-cran-expm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mass; however: Package r-cran-mass is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mnormt; however: Package r-cran-mnormt is not installed. pbuilder-satisfydepends-dummy depends on r-cran-nlme; however: Package r-cran-nlme is not installed. pbuilder-satisfydepends-dummy depends on r-cran-numderiv; however: Package r-cran-numderiv is not installed. pbuilder-satisfydepends-dummy depends on r-cran-optimparallel; however: Package r-cran-optimparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-phangorn; however: Package r-cran-phangorn is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scatterplot3d; however: Package r-cran-scatterplot3d is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libamd3{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcolamd3{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libglpk40{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libltdl7{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsuitesparseconfig7{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-ape{a} r-cran-cli{a} r-cran-clustergeneration{a} r-cran-coda{a} r-cran-codetools{a} r-cran-combinat{a} r-cran-cpp11{a} r-cran-deoptim{a} r-cran-digest{a} r-cran-doparallel{a} r-cran-expm{a} r-cran-fastmatch{a} r-cran-foreach{a} r-cran-generics{a} r-cran-glue{a} r-cran-igraph{a} r-cran-iterators{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-maps{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mnormt{a} r-cran-nlme{a} r-cran-numderiv{a} r-cran-optimparallel{a} r-cran-phangorn{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-quadprog{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-scatterplot3d{a} r-cran-vctrs{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-graph r-cran-bench r-cran-bit64 r-cran-brio r-cran-callr r-cran-caret r-cran-covr r-cran-crayon r-cran-dbi r-cran-decor r-cran-desc r-cran-dplyr r-cran-fs r-cran-ggplot2 r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lbfgsb3c r-cran-lintr r-cran-lobstr r-cran-mlbench r-cran-mockery r-cran-pillar r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-progress r-cran-ps r-cran-rcolorbrewer r-cran-rgl r-cran-rmarkdown r-cran-rmpfr r-cran-roxygen2 r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-scales r-cran-sfsmisc r-cran-spam r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-tinytest r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-whoami r-cran-withr r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 227 newly installed, 0 to remove and 0 not upgraded. Need to get 135 MB of archives. After unpacking 379 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-14 [233 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B] Get: 40 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 65 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get: 109 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 111 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 112 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libncurses-dev amd64 6.5-2+b1 [351 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libreadline-dev amd64 8.2-5 [153 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.44-4 [261 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libpcre2-32-0 amd64 10.44-4 [248 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libpcre2-posix3 amd64 10.44-4 [60.3 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libpcre2-dev amd64 10.44-4 [790 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libpng-dev amd64 1.6.44-2 [366 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 r-base-dev all 4.4.2-1 [4516 B] Get: 137 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian trixie/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian trixie/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian trixie/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-8 [393 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 r-cran-littler amd64 0.3.20-1 [102 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 littler all 0.3.20-1 [16.0 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 r-cran-nlme amd64 3.1.166-1 [2330 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 r-cran-rcpp amd64 1.0.13-1-1 [2074 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 r-cran-ape amd64 5.8-1 [2920 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 r-cran-mass amd64 7.3-61-1 [1112 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 r-cran-clustergeneration all 1.3.8-1 [267 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 r-cran-coda all 0.19-4.1-1 [329 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 r-cran-combinat all 0.0-8-7 [42.8 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 r-cran-deoptim amd64 2.2-8-1 [120 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 r-cran-iterators all 1.0.14-1 [337 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 r-cran-foreach all 1.5.2-1 [122 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 r-cran-doparallel all 1.0.17-1 [188 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 r-cran-expm amd64 1.0-0-1 [228 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 r-cran-fastmatch amd64 1.1-4-1 [34.1 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 r-cran-igraph amd64 2.0.3-1 [5037 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 r-cran-maps amd64 3.4.2-1 [2012 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 r-cran-mnormt amd64 2.1.1-2 [171 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 r-cran-optimparallel all 1.0-2-2 [206 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 r-cran-quadprog amd64 1.5-8-1+b1 [33.6 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 r-cran-phangorn amd64 2.11.1+dfsg-1 [1679 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 r-cran-scatterplot3d all 0.3-44-1 [353 kB] Fetched 135 MB in 2s (65.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... 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Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../029-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... 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Preparing to unpack .../040-libblas3_3.12.0-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-4) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../041-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../042-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../043-libpng16-16t64_1.6.44-2_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../044-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../045-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. 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Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../052-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../053-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../054-libx11-6_2%3a1.8.10-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.10-2) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../055-libxcb-render0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../056-libxcb-shm0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../057-libxext6_2%3a1.3.4-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1+b2_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1+b2) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../059-libcairo2_1.18.2-2_amd64.deb ... Unpacking libcairo2:amd64 (1.18.2-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../060-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../061-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../062-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../063-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../064-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../065-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../066-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../067-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../068-libldap-2.5-0_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../069-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../070-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../071-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../072-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../073-libcurl4t64_8.11.0-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.11.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../074-libdeflate0_1.22-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.22-1) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../075-libglib2.0-0t64_2.82.2-2_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.82.2-2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../076-libjpeg62-turbo_1%3a2.1.5-3+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../077-libgfortran5_14.2.0-8_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-8) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../078-liblapack3_3.12.0-4_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-4) ... Selecting previously unselected package fontconfig. Preparing to unpack .../079-fontconfig_2.15.0-1.1+b1_amd64.deb ... Unpacking fontconfig (2.15.0-1.1+b1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../080-libfribidi0_1.0.15-1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.15-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../081-libgraphite2-3_1.3.14-2+b1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-2+b1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../082-libharfbuzz0b_10.0.1-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../083-libthai-data_0.1.29-2_all.deb ... Unpacking libthai-data (0.1.29-2) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../084-libdatrie1_0.2.13-3+b1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.13-3+b1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../085-libthai0_0.1.29-2+b1_amd64.deb ... Unpacking libthai0:amd64 (0.1.29-2+b1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../086-libpango-1.0-0_1.54.0+ds-3_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.54.0+ds-3) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../087-libpangoft2-1.0-0_1.54.0+ds-3_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../088-libpangocairo-1.0-0_1.54.0+ds-3_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../089-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../091-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../098-libxft2_2.3.6-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b2_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../101-libtk8.6_8.6.15-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.15-1) ... Selecting previously unselected package libice6:amd64. 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Setting up libexpat1:amd64 (2.6.4-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libdatrie1:amd64 (0.2.13-3+b1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up unzip (6.0-28) ... 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Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 28 16:50:47 UTC 2024. Universal Time is now: Thu Nov 28 16:50:47 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14) ... Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b4) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:amd64 (10.44-4) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.10-2) ... 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Setting up readline-common (8.2-5) ... Setting up libicu-dev:amd64 (72.1-5+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b3) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up libblas-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-8) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libpcre2-dev:amd64 (10.44-4) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libpng-dev:amd64 (1.6.44-2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libglpk40:amd64 (5.0-1+b2) ... Setting up liblapack-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1) ... Setting up groff-base (1.23.0-5) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:amd64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ... Setting up libwww-curl-perl:amd64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:amd64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-fastmatch (1.1-4-1) ... Setting up r-cran-lattice (0.22-6-1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-numderiv (2016.8-1.1-3) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-coda (0.19-4.1-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-deoptim (2.2-8-1) ... Setting up r-cran-quadprog (1.5-8-1+b1) ... Setting up r-cran-littler (0.3.20-1) ... Setting up r-cran-rcpp (1.0.13-1-1) ... Setting up r-cran-optimparallel (1.0-2-2) ... Setting up r-cran-combinat (0.0-8-7) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-maps (3.4.2-1) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up r-base-dev (4.4.2-1) ... Setting up littler (0.3.20-1) ... Setting up libmoose-perl:amd64 (2.2207-1+b2) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-ape (5.8-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-mass (7.3-61-1) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-mnormt (2.1.1-2) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-scatterplot3d (0.3-44-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-doparallel (1.0.17-1) ... Setting up r-cran-clustergeneration (1.3.8-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-igraph (2.0.3-1) ... Setting up r-cran-expm (1.0-0-1) ... Setting up r-cran-phangorn (2.11.1+dfsg-1) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-cran-phytools-2.3-0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-cran-phytools_2.3-0-1_source.changes dpkg-buildpackage: info: source package r-cran-phytools dpkg-buildpackage: info: source version 2.3-0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Charles Plessy dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-phytools/ -O--buildsystem=R I: R Package: phytools Version: 2.3-0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 28 Jun 2024 07:40:30 +0900 mkdir -p /build/reproducible-path/r-cran-phytools-2.3-0/debian/r-cran-phytools/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-cran-phytools-2.3-0/debian/r-cran-phytools/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 28 Jun 2024 07:40:30 +0900'" * installing *source* package 'phytools' ... ** package 'phytools' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phytools) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-ape for Depends:ape (>= 5.7) I: Using r-cran-maps for Depends:maps I: Using r-cran-animation for Suggests:animation W: Cannot find a debian package for Suggests:geiger I: Using r-cran-plotrix for Suggests:plotrix I: Using r-cran-rcolorbrewer by changing version to for Suggests:RColorBrewer I: Using r-cran-rgl for Suggests:rgl I: Using r-cran-clustergeneration for Imports:clusterGeneration I: Using r-cran-coda for Imports:coda I: Using r-cran-combinat for Imports:combinat I: Using r-cran-deoptim for Imports:DEoptim I: Using r-cran-doparallel for Imports:doParallel I: Using r-cran-expm for Imports:expm I: Using r-cran-foreach for Imports:foreach I: Using r-cran-mass for Imports:MASS I: Using r-cran-mnormt for Imports:mnormt I: Using r-cran-nlme for Imports:nlme I: Using r-cran-numderiv for Imports:numDeriv I: Using r-cran-optimparallel for Imports:optimParallel I: Using r-cran-phangorn for Imports:phangorn (>= 2.3.1) I: Using r-cran-scatterplot3d for Imports:scatterplot3d I: Use r-cran-phytools as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-phytools' in '../r-cran-phytools_2.3-0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-phytools_2.3-0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-cran-phytools_2.3-0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1062865 and its subdirectories I: Current time: Fri Nov 29 06:52:39 +14 2024 I: pbuilder-time-stamp: 1732812759 + false + set +x Thu Nov 28 16:52:39 UTC 2024 I: Signing ./b2/r-cran-phytools_2.3-0-1_amd64.buildinfo as r-cran-phytools_2.3-0-1_amd64.buildinfo.asc Thu Nov 28 16:52:39 UTC 2024 I: Signed ./b2/r-cran-phytools_2.3-0-1_amd64.buildinfo as ./b2/r-cran-phytools_2.3-0-1_amd64.buildinfo.asc Thu Nov 28 16:52:39 UTC 2024 - build #2 for r-cran-phytools/trixie/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Thu Nov 28 16:52:39 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Qas7ubP0, removing. /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx: total 368 drwxr-xr-x 2 jenkins jenkins 4096 Nov 28 16:48 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 28 16:52 b2 -rw-r--r-- 1 jenkins jenkins 2338 Jun 27 22:52 r-cran-phytools_2.3-0-1.dsc -rw------- 1 jenkins jenkins 357405 Nov 28 16:48 rbuildlog.86QfBxL /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b1: total 3564 -rw-r--r-- 1 jenkins jenkins 353624 Nov 28 16:48 build.log -rw-r--r-- 1 jenkins jenkins 3404 Nov 28 16:48 r-cran-phytools_2.3-0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2338 Nov 28 16:48 r-cran-phytools_2.3-0-1.dsc -rw-r--r-- 1 jenkins jenkins 2732668 Nov 28 16:48 r-cran-phytools_2.3-0-1_all.deb -rw-r--r-- 1 jenkins jenkins 11087 Nov 28 16:48 r-cran-phytools_2.3-0-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 11969 Nov 28 16:48 r-cran-phytools_2.3-0-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1205 Nov 28 16:48 r-cran-phytools_2.3-0-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1648 Nov 28 16:48 r-cran-phytools_2.3-0-1_source.changes -rw-r--r-- 1 jenkins jenkins 502936 Nov 28 16:48 r-cran-phytools_2.3-0.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b2: total 3296 -rw-r--r-- 1 jenkins jenkins 93533 Nov 28 16:52 build.log -rw-r--r-- 1 jenkins jenkins 3404 Nov 28 16:52 r-cran-phytools_2.3-0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2338 Nov 28 16:52 r-cran-phytools_2.3-0-1.dsc -rw-r--r-- 1 jenkins jenkins 2732668 Nov 28 16:52 r-cran-phytools_2.3-0-1_all.deb -rw-r--r-- 1 jenkins jenkins 11078 Nov 28 16:52 r-cran-phytools_2.3-0-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 11960 Nov 28 16:52 r-cran-phytools_2.3-0-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1205 Nov 28 16:52 r-cran-phytools_2.3-0-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1648 Nov 28 16:52 r-cran-phytools_2.3-0-1_source.changes -rw-r--r-- 1 jenkins jenkins 502936 Nov 28 16:52 r-cran-phytools_2.3-0.orig.tar.gz Thu Nov 28 16:52:40 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Nov 28 16:52:40 UTC 2024 I: r-cran-phytools_2.3-0-1_amd64.changes: Format: 1.8 Date: Fri, 28 Jun 2024 07:40:30 +0900 Source: r-cran-phytools Binary: r-cran-phytools Architecture: all Version: 2.3-0-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Charles Plessy Description: r-cran-phytools - GNU R phylogenetic tools for comparative biology Changes: r-cran-phytools (2.3-0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) Checksums-Sha1: 587a27ba13f45f45e196dae392df0081ad0f1e92 2732668 r-cran-phytools_2.3-0-1_all.deb afb1cd133df378414470e3bd0d55757732b41a47 11087 r-cran-phytools_2.3-0-1_amd64.buildinfo Checksums-Sha256: f004e007af0039567d1b97ab586e0e49621db048e33ab96d1e77db274c3549f6 2732668 r-cran-phytools_2.3-0-1_all.deb a56fc8f32553568f83006183c95e10576dfd9bc88076e8515e84fa8616661435 11087 r-cran-phytools_2.3-0-1_amd64.buildinfo Files: 00840196f5414aaaa74fa0469ac17eef 2732668 gnu-r optional r-cran-phytools_2.3-0-1_all.deb b7fc26ba932355d55722964607c1b8af 11087 gnu-r optional r-cran-phytools_2.3-0-1_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/r-cran-phytools_2.3-0-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/r-cran-phytools_2.3-0-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/r-cran-phytools_2.3-0-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/r-cran-phytools_2.3-0-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/r-cran-phytools_2.3-0-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/r-cran-phytools_2.3-0-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-28 16:48:51.907030536 +0000 +++ b2/build.log 2024-11-28 16:52:40.128664563 +0000 @@ -1,2433 +1,8 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 31 11:09:16 -12 2025 -I: pbuilder-time-stamp: 1767222556 +I: Current time: Fri Nov 29 06:48:54 +14 2024 +I: pbuilder-time-stamp: 1732812534 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] -tar: ./build: time stamp 2027-02-01 12:10:44 is 34304487.43685712 s in the future -tar: ./dev/ptmx: time stamp 2027-02-01 12:09:31 is 34304414.436646288 s in the future -tar: ./dev/zero: time stamp 2027-02-01 12:09:31 is 34304414.436531807 s in the future -tar: ./dev/null: time stamp 2027-02-01 12:09:31 is 34304414.436459926 s in the future -tar: ./dev/console: time stamp 2027-02-01 12:09:31 is 34304414.436379692 s in the future -tar: ./dev/random: time stamp 2027-02-01 12:09:31 is 34304414.436325502 s in the future -tar: ./dev/full: time stamp 2027-02-01 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./usr/share/locale/nl/LC_TIME: time stamp 2027-02-01 12:09:44 is 34304419.493678155 s in the future -tar: ./usr/share/locale/nl: time stamp 2027-02-01 12:09:28 is 34304403.493660217 s in the future -tar: ./usr/share/locale/sr/LC_TIME: time stamp 2027-02-01 12:09:44 is 34304419.493640808 s in the future -tar: ./usr/share/locale/sr: time stamp 2027-02-01 12:09:28 is 34304403.493623084 s in the future -tar: ./usr/share/locale/pt/LC_TIME: time stamp 2027-02-01 12:09:44 is 34304419.493603113 s in the future -tar: ./usr/share/locale/pt: time stamp 2027-02-01 12:09:28 is 34304403.493583097 s in the future -tar: ./usr/share/locale/uk/LC_TIME: time stamp 2027-02-01 12:09:44 is 34304419.493562632 s in the future -tar: ./usr/share/locale/uk: time stamp 2027-02-01 12:09:28 is 34304403.493544105 s in the future -tar: ./usr/share/locale/id/LC_TIME: time stamp 2027-02-01 12:09:44 is 34304419.493524199 s in the future -tar: ./usr/share/locale/id: time stamp 2027-02-01 12:09:28 is 34304403.493506429 s in the future -tar: ./usr/share/locale/fi/LC_TIME: time stamp 2027-02-01 12:09:44 is 34304419.493486711 s in the future -tar: ./usr/share/locale/fi: time stamp 2027-02-01 12:09:28 is 34304403.493468918 s in the future -tar: ./usr/share/locale/fr/LC_TIME: time stamp 2027-02-01 12:09:44 is 34304419.493448375 s in the future -tar: ./usr/share/locale/fr: time stamp 2027-02-01 12:09:28 is 34304403.493430361 s in the future -tar: ./usr/share/locale: time stamp 2027-02-01 12:10:54 is 34304489.493411356 s in the future -tar: ./usr/share/man/sl/man1: time stamp 2027-02-01 12:10:00 is 34304435.493389712 s in the future -tar: ./usr/share/man/cs/man8: time stamp 2027-02-01 12:11:21 is 34304516.493355022 s in the future -tar: ./usr/share/man/cs: time stamp 2027-02-01 12:10:53 is 34304488.493337277 s in the future -tar: ./usr/share/man/it/man1: time stamp 2027-02-01 12:10:54 is 34304489.493316509 s in the future -tar: ./usr/share/man/it: time stamp 2027-02-01 12:09:28 is 34304403.493282322 s in the future -tar: ./usr/share/man/ja/man1: time stamp 2027-02-01 12:10:53 is 34304488.493262609 s in the future -tar: ./usr/share/man/ja: time stamp 2027-02-01 12:09:28 is 34304403.493228373 s in the future -tar: ./usr/share/man/gl/man8: time stamp 2027-02-01 12:11:21 is 34304516.493209404 s in the future -tar: ./usr/share/man/gl: time stamp 2027-02-01 12:10:54 is 34304489.493191908 s in the future -tar: ./usr/share/man/pl/man1: time stamp 2027-02-01 12:10:53 is 34304488.49317144 s in the future -tar: ./usr/share/man/pl: time stamp 2027-02-01 12:09:28 is 34304403.49313793 s in the future -tar: ./usr/share/man/de: time stamp 2027-02-01 12:10:07 is 34304442.49305722 s in the future -tar: ./usr/share/man/es/man1: time stamp 2027-02-01 12:11:20 is 34304515.493036406 s in the future -tar: ./usr/share/man/es: time stamp 2027-02-01 12:09:28 is 34304403.493003868 s in the future -tar: ./usr/share/man/sv/man1: time stamp 2027-02-01 12:11:20 is 34304515.492983843 s in the future -tar: ./usr/share/man/sv: time stamp 2027-02-01 12:10:16 is 34304451.492964648 s in the future -tar: ./usr/share/man/fi/man8: time stamp 2027-02-01 12:11:21 is 34304516.492930785 s in the future -tar: ./usr/share/man/fi: time stamp 2027-02-01 12:10:54 is 34304489.492913038 s in the future -tar: ./usr/share/man/fr: time stamp 2027-02-01 12:10:15 is 34304450.492862622 s in the future -tar: ./usr/share/man: time stamp 2027-02-01 12:10:54 is 34304489.492844688 s in the future -tar: ./usr/share: time stamp 2027-02-01 12:10:55 is 34304490.49282631 s in the future -tar: ./usr: time stamp 2027-02-01 12:09:32 is 34304407.492809131 s in the future -tar: ./etc/systemd/system/timers.target.wants: time stamp 2027-02-01 12:10:36 is 34304471.492772884 s in the future -tar: ./etc/systemd/system: time stamp 2027-02-01 12:09:33 is 34304408.492752715 s in the future -tar: ./etc/alternatives: time stamp 2027-02-01 12:11:21 is 34304516.492720541 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -2451,52 +26,84 @@ dpkg-source: info: unpacking r-cran-phytools_2.3-0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1625689/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 28 16:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='7d33abd750034a629d9f7ec098c86ea1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1625689' - PS1='# ' - PS2='> ' + INVOCATION_ID=079ef764d1de4f09b111bef955b763b9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1062865 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/pbuilderrc_UVmF --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b1 --logfile b1/build.log r-cran-phytools_2.3-0-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/pbuilderrc_vjgB --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b2 --logfile b2/build.log r-cran-phytools_2.3-0-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1625689/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -2795,7 +402,7 @@ Get: 225 http://deb.debian.org/debian trixie/main amd64 r-cran-quadprog amd64 1.5-8-1+b1 [33.6 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 r-cran-phangorn amd64 2.11.1+dfsg-1 [1679 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 r-cran-scatterplot3d all 0.3-44-1 [353 kB] -Fetched 135 MB in 4s (37.0 MB/s) +Fetched 135 MB in 2s (65.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) @@ -3534,8 +1141,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Dec 31 23:10:37 UTC 2025. -Universal Time is now: Wed Dec 31 23:10:37 UTC 2025. +Local time is now: Thu Nov 28 16:50:47 UTC 2024. +Universal Time is now: Thu Nov 28 16:50:47 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14) ... @@ -3753,7 +1360,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/r-cran-phytools-2.3-0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-cran-phytools_2.3-0-1_source.changes +I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-cran-phytools-2.3-0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-cran-phytools_2.3-0-1_source.changes dpkg-buildpackage: info: source package r-cran-phytools dpkg-buildpackage: info: source version 2.3-0-1 dpkg-buildpackage: info: source distribution unstable @@ -3840,12 +1451,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1062865/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1625689 and its subdirectories -I: Current time: Wed Dec 31 11:11:51 -12 2025 -I: pbuilder-time-stamp: 1767222711 +I: removing directory /srv/workspace/pbuilder/1062865 and its subdirectories +I: Current time: Fri Nov 29 06:52:39 +14 2024 +I: pbuilder-time-stamp: 1732812759 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/r-cran-phytools_2.3-0-1.diff: 88.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/r-cran-phytools_2.3-0-1.diff.gz b2/build.log: 81.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 86.9% -- replaced with stdout Thu Nov 28 16:52:41 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_r-cran-phytools_trixie_amd64_1732812761 + touch /var/log/reproducible-builds/diffoscope_stamp_r-cran-phytools_trixie_amd64_1732812761 + RESULT=0 + systemd-run '--description=diffoscope on r-cran-phytools/2.3-0-1 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_24-41605 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx --run-session -c jenkins-reproducible-trixie-diffoscope-f90d67a5-e7ee-47ef-b479-663b88cb2fab -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/dbd-tmp-0s8oub5 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/r-cran-phytools_2.3-0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/r-cran-phytools_2.3-0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/r-cran-phytools_2.3-0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b1/r-cran-phytools_2.3-0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b2/r-cran-phytools_2.3-0-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_24-41605.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/r-cran-phytools_2.3-0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/r-cran-phytools_2.3-0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/r-cran-phytools_2.3-0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b1/r-cran-phytools_2.3-0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cSkFrUAx/b2/r-cran-phytools_2.3-0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.372s) 0.372s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.038s) 0.038s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 702ms CPU time consumed: 702ms _ _ _ _ __ ___ _ __ __ _ _ __ _ __ | |__ _ _| |_ ___ ___ | |___ | '__|____ / __| '__/ _` | '_ \ _____| '_ \| '_ \| | | | __/ _ \ / _ \| / __| | | |_____| (__| | | (_| | | | |_____| |_) | | | | |_| | || (_) | (_) | \__ \ |_| \___|_| \__,_|_| |_| | .__/|_| |_|\__, |\__\___/ \___/|_|___/ |_| |___/ Thu Nov 28 16:52:42 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 28 16:52:42 UTC 2024 I: r-cran-phytools from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-28 16:52:43] INFO: Starting at 2024-11-28 16:52:43.539298 [2024-11-28 16:52:43] INFO: Generating the pages of 1 package(s) [2024-11-28 16:52:43] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/r-cran-phytools didn't produce a buildlog, even though it has been built. [2024-11-28 16:52:43] INFO: Finished at 2024-11-28 16:52:43.974448, took: 0:00:00.435157 Thu Nov 28 16:52:44 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/r-cran-phytools.html Thu Nov 28 16:52:44 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 28 16:52:44 UTC 2024 I: Submitting 12K b1/r-cran-phytools_2.3-0-1_amd64.buildinfo.asc https://buildinfo.debian.net/afb1cd133df378414470e3bd0d55757732b41a47/r-cran-phytools_2.3-0-1_all Thu Nov 28 16:52:44 UTC 2024 I: Submitting 12K b2/r-cran-phytools_2.3-0-1_amd64.buildinfo.asc https://buildinfo.debian.net/7305252f722443fab30da2aa3b1501eaffd8e75d/r-cran-phytools_2.3-0-1_all Thu Nov 28 16:52:45 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 28 16:52:45 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 28 16:52:45 UTC 2024 I: Removing signed r-cran-phytools_2.3-0-1_amd64.buildinfo.asc files: removed './b1/r-cran-phytools_2.3-0-1_amd64.buildinfo.asc' removed './b2/r-cran-phytools_2.3-0-1_amd64.buildinfo.asc' 1732812765 amd64 trixie r-cran-phytools Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/r-cran-phytools_2.3-0-1.rbuild.log: 86.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/r-cran-phytools_2.3-0-1.rbuild.log.gz [2024-11-28 16:52:45] INFO: Starting at 2024-11-28 16:52:45.945508 [2024-11-28 16:52:46] INFO: Generating the pages of 1 package(s) [2024-11-28 16:52:46] INFO: Finished at 2024-11-28 16:52:46.341702, took: 0:00:00.396202 All cleanup done. Thu Nov 28 16:52:46 UTC 2024 - total duration: 0h 6m 33s. Thu Nov 28 16:52:46 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-vcmUX1kB, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 6min 37.460s CPU time consumed: 7.308s