Running as unit: rb-build-amd64_24-49069.service ==================================================================================== Sat Feb 22 01:43:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_24) on jenkins, called using "ionos15-amd64 ionos11-amd64" as arguments. Sat Feb 22 01:43:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Efcenk1I" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 01:43:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sat Feb 22 01:43:59 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-7KAQFw' Sat Feb 22 01:43:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sat Feb 22 01:43:59 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-jWReTY' ok, let's check if cyvcf2 is building anywhere yet… ok, cyvcf2 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of cyvcf2 in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Sat Feb 22 01:44:11 UTC 2025 I: starting to build cyvcf2/unstable/amd64 on jenkins on '2025-02-22 01:43' Sat Feb 22 01:44:12 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/49069/console.log 1740188652 amd64 unstable cyvcf2 Sat Feb 22 01:44:12 UTC 2025 I: Downloading source for unstable/cyvcf2=0.31.1-2 --2025-02-22 01:44:12-- http://deb.debian.org/debian/pool/main/c/cyvcf2/cyvcf2_0.31.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2337 (2.3K) [text/prs.lines.tag] Saving to: ‘cyvcf2_0.31.1-2.dsc’ 0K .. 100% 398M=0s 2025-02-22 01:44:12 (398 MB/s) - ‘cyvcf2_0.31.1-2.dsc’ saved [2337/2337] --2025-02-22 01:44:12-- http://deb.debian.org/debian/pool/main/c/cyvcf2/cyvcf2_0.31.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2337 (2.3K) [text/prs.lines.tag] Saving to: ‘cyvcf2_0.31.1-2.dsc’ 0K .. 100% 398M=0s 2025-02-22 01:44:12 (398 MB/s) - ‘cyvcf2_0.31.1-2.dsc’ saved [2337/2337] Sat Feb 22 01:44:12 UTC 2025 I: cyvcf2_0.31.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cyvcf2 Binary: python3-cyvcf2 Architecture: any Version: 0.31.1-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Liubov Chuprikova , Étienne Mollier Homepage: https://github.com/brentp/cyvcf2 Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/cyvcf2 Vcs-Git: https://salsa.debian.org/med-team/cyvcf2.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, cython3, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-pytest, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man Package-List: python3-cyvcf2 deb python optional arch=any Checksums-Sha1: 879a95430499a10d40dcd9e177bf0e713d3a8059 420463 cyvcf2_0.31.1.orig.tar.gz 25837afcce56d49d8ccdc9fd2774c0a24220e8f3 6764 cyvcf2_0.31.1-2.debian.tar.xz Checksums-Sha256: 2a2bc695bd86cf07b5f0cfcd5c8f072e40076fb0954d81d8d7f404fe92ba4186 420463 cyvcf2_0.31.1.orig.tar.gz 3bd86808c3f8e09e9986f4a166e879b2d7b850c5ca03d711625886c5ed83097a 6764 cyvcf2_0.31.1-2.debian.tar.xz Files: 6b3f9cb0c8967bdbca8af3067e6a682c 420463 cyvcf2_0.31.1.orig.tar.gz d7b200fb15ade446e9952532ffcf42ce 6764 cyvcf2_0.31.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmaqBu4ACgkQPCZ2P2xn 5uJV/A//WApN7kMqvwg/adLN5oHkMNCGnzYtLV5zGBGlseDXE6UOXJzQ2geyXKHB SwB4Go5IrnejSW/mkvQbO2EKoTw5QOreJAVpLibXUnUJSFpuzV9xGTYrbE7nSoXp /o7FW/+lCsF35ojkiW8qJseO/bF8IeF6CXjCmt9khI46n2cA39zC5TwnJr36Gga+ Tf6QbUBHhTgSK/pSR/fXdXGlSHnTRX5TUKyNoxE0Hi1v9AoRKOGmNL4WoilcyFkw 32ymMJOLajDI9C4dkPqr1Ae6goQViBg1tB4ACPkQlTJ9fX+OrdtuXRInFkEWt4iT ztIivXJGlYm/1jr/aS2+ja0e8I5+lAobdwqu2UAVGwjFyxD2dizA8le+yLnopFGm 0RYY0tyz3coYuoqMhw3HvPocqvL8Fz1W+LT+PuoT2E9t1YJ+gHAiRSEfJ5Jz2S9a c29N4bSMj7Je6aD1+hpw8jiEyE0KZa9I0mKeEypEEt8+3ax48mm21O1FhH1Jhd2I SXKCd04g6+GcRXDTQunbWY/wNzpDUtxaA8geg6BDpRkk23fmNcwLdh8Hi+zAmKcs shPBlNGP96+pa429pLTztxVtarSIsmsxlXdVe9qBz6KrZQyMdrhpRrofUKSohfjW JsEI37i+S3uiFiR3kPhvkxZp/v+7GLx+8R4oWMWS6LRXoF0IEtI= =E1O3 -----END PGP SIGNATURE----- Sat Feb 22 01:44:12 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 01:44:12 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat Feb 22 01:44:12 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat Feb 22 01:44:12 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sat Feb 22 01:44:12 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-lbuFzM' ==================================================================================== Fri Mar 27 08:07:13 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 cyvcf2 unstable /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp 0.31.1-2" as arguments. Fri Mar 27 08:07:13 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-kgsDJDx7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 08:07:13 UTC 2026 I: Downloading source for unstable/cyvcf2=0.31.1-2 Reading package lists... NOTICE: 'cyvcf2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/cyvcf2.git Please use: git clone https://salsa.debian.org/med-team/cyvcf2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 430 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (dsc) [2337 B] Get:2 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (tar) [420 kB] Get:3 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (diff) [6764 B] Fetched 430 kB in 0s (5940 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'cyvcf2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/cyvcf2.git Please use: git clone https://salsa.debian.org/med-team/cyvcf2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 430 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (dsc) [2337 B] Get:2 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (tar) [420 kB] Get:3 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (diff) [6764 B] Fetched 430 kB in 0s (5940 kB/s) Download complete and in download only mode ============================================================================= Building cyvcf2 in unstable on amd64 on ionos15-amd64 now. Date: Fri Mar 27 08:07:13 UTC 2026 Date UTC: Fri Mar 27 08:07:13 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 26 20:07:13 -12 2026 I: pbuilder-time-stamp: 1774598833 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cyvcf2_0.31.1-2.dsc] I: copying [./cyvcf2_0.31.1.orig.tar.gz] I: copying [./cyvcf2_0.31.1-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.1-2.dsc: unsupported subcommand dpkg-source: info: extracting cyvcf2 in cyvcf2-0.31.1 dpkg-source: info: unpacking cyvcf2_0.31.1.orig.tar.gz dpkg-source: info: unpacking cyvcf2_0.31.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2663571/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='842b68566e054009aa8f408fa5eb80c4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2663571' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/pbuilderrc_Fc5t --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b1 --logfile b1/build.log cyvcf2_0.31.1-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2663571/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, cython3, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-pytest, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-coloredlogs; however: Package python3-coloredlogs is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-openssl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-openssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} libldap-dev{a} libldap2{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-click{a} python3-coloredlogs{a} python3-dev{a} python3-humanfriendly{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-pygments wget 0 packages upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 84.7 MB of archives. After unpacking 353 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 11.0.0 [27.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-2 [138 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-17 [836 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.3+ds-2 [7517 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-2 [3159 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 47 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-2 [365 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.9.1-1 [23.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.9.1-1 [167 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.12.1-2 [479 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.23-1+b1 [56.0 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.9-1 [2151 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.9-1 [5125 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.1-2 [1072 B] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.9-1 [505 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.1-2 [1076 B] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.2.0-1 [98.7 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] Fetched 84.7 MB in 8s (10.1 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:amd64 (3.13.2-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20124 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_11.0.0_all.deb ... Unpacking media-types (11.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21134 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_amd64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-2_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_14.2.0-17_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-17) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-2_amd64.deb ... Unpacking python3-numpy (1:2.2.3+ds-2) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../006-libpython3.12-minimal_3.12.9-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.9-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../121-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package libpython3.13:amd64. Preparing to unpack .../122-libpython3.13_3.13.2-1_amd64.deb ... Unpacking libpython3.13:amd64 (3.13.2-1) ... Selecting previously unselected package libpython3.13-dev:amd64. Preparing to unpack .../123-libpython3.13-dev_3.13.2-1_amd64.deb ... Unpacking libpython3.13-dev:amd64 (3.13.2-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../124-libpython3-dev_3.13.1-2_amd64.deb ... Unpacking libpython3-dev:amd64 (3.13.1-2) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../125-libpython3.12-stdlib_3.12.9-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.9-1) ... Selecting previously unselected package libpython3.12t64:amd64. Preparing to unpack .../126-libpython3.12t64_3.12.9-1_amd64.deb ... Unpacking libpython3.12t64:amd64 (3.12.9-1) ... Selecting previously unselected package libpython3.12-dev:amd64. Preparing to unpack .../127-libpython3.12-dev_3.12.9-1_amd64.deb ... Unpacking libpython3.12-dev:amd64 (3.12.9-1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../128-libpython3-all-dev_3.13.1-2_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.13.1-2) ... Selecting previously unselected package python3.12. Preparing to unpack .../129-python3.12_3.12.9-1_amd64.deb ... Unpacking python3.12 (3.12.9-1) ... Selecting previously unselected package python3-all. 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Setting up media-types (11.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up libzstd-dev:amd64 (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:amd64 (3.12.9-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 27 08:08:06 UTC 2026. Universal Time is now: Fri Mar 27 08:08:06 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.22.0-1+b1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up comerr-dev:amd64 (2.1-1.47.2-1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up libssl-dev:amd64 (3.4.1-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-2) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-17) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libnghttp3-dev:amd64 (1.6.0-2) ... Setting up liblzma-dev:amd64 (5.6.3-1+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdeflate-dev:amd64 (1.23-1+b1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libngtcp2-dev:amd64 (1.9.1-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:amd64 (2.6.9+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libpython3.13:amd64 (3.13.2-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up python3-packaging (24.2-1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ... Setting up python3-humanfriendly (10.0-6) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:amd64 (1.21.3-4) ... Setting up libpython3.13-dev:amd64 (3.13.2-1) ... Setting up cython3 (3.0.11+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.3+ds-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-4) ... Setting up libgnutls28-dev:amd64 (3.8.9-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:amd64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-4) ... Setting up python3.13-dev (3.13.2-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-2) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.9.1-1) ... Setting up libpython3.12t64:amd64 (3.12.9-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.1-2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up krb5-multidev:amd64 (1.21.3-4) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up libpython3.12-dev:amd64 (3.12.9-1) ... Setting up libkrb5-dev:amd64 (1.21.3-4) ... Setting up libpython3-all-dev:amd64 (3.13.1-2) ... Setting up python3.12-dev (3.12.9-1) ... Setting up dh-python (6.20250108) ... Setting up python3-all-dev (3.13.1-2) ... Setting up libcurl4-gnutls-dev:amd64 (8.12.1-2) ... Setting up libhts-dev:amd64 (1.21+ds-1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cyvcf2-0.31.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cyvcf2_0.31.1-2_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.31.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from cyvcf2-0.31.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py clean warning: cyvcf2/cyvcf2.pyx:1377:36: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2079:17: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2278:29: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2350:15: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running clean removing '/build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-cyvcf2.substvars debian/files rm -fr -- debian/python3-cyvcf2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) rm -rf cyvcf2.egg-info cyvcf2/cyvcf2.c __o.vcf find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py config warning: cyvcf2/cyvcf2.pyx:1377:36: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2079:17: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2278:29: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2350:15: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running config I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.13" I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt writing manifest file 'cyvcf2.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL building 'cyvcf2.cyvcf2' extension creating build/temp.linux-x86_64-cpython-312/cyvcf2 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-cpython-312/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:1266: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-cpython-312/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/cyvcf2/cyvcf2.o build/temp.linux-x86_64-cpython-312/cyvcf2/helpers.o -L/usr/lib/x86_64-linux-gnu -lhts -o /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL building 'cyvcf2.cyvcf2' extension creating build/temp.linux-x86_64-cpython-313/cyvcf2 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.13 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-cpython-313/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:1266: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.13 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-cpython-313/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/cyvcf2/cyvcf2.o build/temp.linux-x86_64-cpython-313/cyvcf2/helpers.o -L/usr/lib/x86_64-linux-gnu -lhts -o /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' echo "cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually" cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually for tdir in .pybuild/cpython3_* ; do \ cp -a cyvcf2/tests ${tdir}/build/cyvcf2 ; \ done dh_auto_test pybuild --test --test-pytest -i python{version} -p "3.12 3.13" I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cyvcf2-0.31.1 configfile: setup.cfg plugins: typeguard-4.4.1 collected 112 items cyvcf2/tests/test_cli.py . [ 0%] cyvcf2/tests/test_hemi.py . [ 1%] cyvcf2/tests/test_reader.py ............................................ [ 41%] ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] ============================= 112 passed in 1.26s ============================== I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cyvcf2-0.31.1 configfile: setup.cfg plugins: typeguard-4.4.1 collected 112 items cyvcf2/tests/test_cli.py . [ 0%] cyvcf2/tests/test_hemi.py . [ 1%] cyvcf2/tests/test_reader.py ............................................ [ 41%] ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] ============================= 112 passed in 1.22s ============================== rm -fr -- /tmp/dh-xdg-rundir-KUlpeWY7 # clean up after testing find . -name out.vcf -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-cyvcf2.substvars rm -fr -- debian/.debhelper/generated/python3-cyvcf2/ debian/python3-cyvcf2/ debian/tmp/ dh_auto_install --destdir=debian/python3-cyvcf2/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 pybuild --install -i python{version} -p "3.12 3.13" --dest-dir=/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL running install_lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2-0.31.1.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL running install_lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2-0.31.1.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' dh_numpy3 mv debian/python3-cyvcf2.substvars.new debian/python3-cyvcf2.substvars dh_install make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/copyright debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/.debhelper/generated/python3-cyvcf2/dh_installchangelogs.dch.trimmed debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog.Debian install -p -m0644 ./CHANGES.md debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' PATH=$PATH:/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin \ PYTHONPATH=/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/ \ help2man --no-info \ --name="fast parsing of VCF and BCF including region-queries" \ --version-string=0.31.1 cyvcf2 > debian/cyvcf2.1 dh_installman install -m0755 -d debian/python3-cyvcf2/usr/share/man/man1/ install -p -m0644 ./debian/cyvcf2.1 debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 mv debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1.dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 chmod 0644 -- debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13) D: dh_python3 debhelper:174: source=cyvcf2, binary packages=['python3-cyvcf2'] D: dh_python3 dh_python3:205: processing package python3-cyvcf2... D: dh_python3 fs:50: moving files from debian/python3-cyvcf2/usr/lib/python3.12/dist-packages to debian/python3-cyvcf2/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-cyvcf2/usr/lib/python3.13/dist-packages to debian/python3-cyvcf2/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-cyvcf2 details = {'requires.txt': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.31.1.egg-info/requires.txt'}, 'egg-info': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.31.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-cyvcf2 D: dh_python3 pydist:175: trying to find dependency for click (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for coloredlogs (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for numpy>=1.16.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3-coloredlogs', 'python3:any', 'python3 (<< 3.14)', 'python3-numpy', 'python3-click'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-cyvcf2 chmod a-x usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 gzip -9nf usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 cd '/build/reproducible-path/cyvcf2-0.31.1' dh_fixperms -O--buildsystem=pybuild find debian/python3-cyvcf2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cyvcf2/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cyvcf2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cyvcf2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cyvcf2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug -- debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug chmod 0644 -- debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cyvcf2/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cyvcf2/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc ln -s python3-cyvcf2 debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc/python3-cyvcf2-dbgsym install -m0755 -d debian/.debhelper/python3-cyvcf2 dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-cyvcf2/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN dpkg-shlibdeps -Tdebian/python3-cyvcf2.substvars debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/postinst cat debian/python3-cyvcf2.postinst.debhelper >> debian/python3-cyvcf2/DEBIAN/postinst chmod 0755 -- debian/python3-cyvcf2/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/prerm cat debian/python3-cyvcf2.prerm.debhelper >> debian/python3-cyvcf2/DEBIAN/prerm chmod 0755 -- debian/python3-cyvcf2/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN echo misc:Depends= >> debian/python3-cyvcf2.substvars echo misc:Pre-Depends= >> debian/python3-cyvcf2.substvars install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/.debhelper/python3-cyvcf2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cyvcf2-dbgsym "-DDepends=python3-cyvcf2 (= \${binary:Version})" "-DDescription=debug symbols for python3-cyvcf2" "-DBuild-Ids=0dc0f45c583b2aab36f5b0742c5cdfef375389e8 7132c2b6efe3a75e7039103dccee5899ecba7921" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/python3-cyvcf2 chmod 0644 -- debian/python3-cyvcf2/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN cd debian/python3-cyvcf2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-cyvcf2/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cyvcf2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-cyvcf2 .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cyvcf2/dbgsym-root .. dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb'. dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.31.1-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cyvcf2_0.31.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../cyvcf2_0.31.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from cyvcf2-0.31.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2663571 and its subdirectories I: Current time: Thu Mar 26 20:10:15 -12 2026 I: pbuilder-time-stamp: 1774599015 Fri Mar 27 08:10:15 UTC 2026 I: Signing ./b1/cyvcf2_0.31.1-2_amd64.buildinfo as cyvcf2_0.31.1-2_amd64.buildinfo.asc Fri Mar 27 08:10:15 UTC 2026 I: Signed ./b1/cyvcf2_0.31.1-2_amd64.buildinfo as ./b1/cyvcf2_0.31.1-2_amd64.buildinfo.asc Fri Mar 27 08:10:15 UTC 2026 - build #1 for cyvcf2/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Fri Mar 27 08:10:15 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-kgsDJDx7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 01:47 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 01:44 b2 -rw-r--r-- 1 jenkins jenkins 2337 Jul 31 2024 cyvcf2_0.31.1-2.dsc -rw------- 1 jenkins jenkins 3437 Feb 22 01:44 rbuildlog.ujWmpGE /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b1: total 4300 -rw-r--r-- 1 jenkins jenkins 131112 Feb 22 01:47 build.log -rw-r--r-- 1 jenkins jenkins 6764 Feb 22 01:47 cyvcf2_0.31.1-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2337 Feb 22 01:47 cyvcf2_0.31.1-2.dsc -rw-r--r-- 1 jenkins jenkins 8964 Feb 22 01:47 cyvcf2_0.31.1-2_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9846 Feb 22 01:47 cyvcf2_0.31.1-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1485 Feb 22 01:47 cyvcf2_0.31.1-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 1282 Feb 22 01:47 cyvcf2_0.31.1-2_source.changes -rw-r--r-- 1 jenkins jenkins 3148916 Feb 22 01:47 python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1070324 Feb 22 01:47 python3-cyvcf2_0.31.1-2_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b2: total 0 Sat Feb 22 01:47:16 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 26 20:07:13 -12 2026 I: pbuilder-time-stamp: 1774598833 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cyvcf2_0.31.1-2.dsc] I: copying [./cyvcf2_0.31.1.orig.tar.gz] I: copying [./cyvcf2_0.31.1-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.1-2.dsc: unsupported subcommand dpkg-source: info: extracting cyvcf2 in cyvcf2-0.31.1 dpkg-source: info: unpacking cyvcf2_0.31.1.orig.tar.gz dpkg-source: info: unpacking cyvcf2_0.31.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2663571/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='842b68566e054009aa8f408fa5eb80c4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2663571' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/pbuilderrc_Fc5t --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b1 --logfile b1/build.log cyvcf2_0.31.1-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2663571/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, cython3, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-pytest, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-coloredlogs; however: Package python3-coloredlogs is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-openssl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-openssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} libldap-dev{a} libldap2{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-click{a} python3-coloredlogs{a} python3-dev{a} python3-humanfriendly{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-pygments wget 0 packages upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 84.7 MB of archives. After unpacking 353 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 11.0.0 [27.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-2 [138 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-17 [836 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.3+ds-2 [7517 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-2 [3159 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 47 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-2 [365 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.9.1-1 [23.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.9.1-1 [167 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.12.1-2 [479 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.23-1+b1 [56.0 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.9-1 [2151 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.9-1 [5125 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.1-2 [1072 B] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.9-1 [505 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.1-2 [1076 B] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.2.0-1 [98.7 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] Fetched 84.7 MB in 8s (10.1 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../121-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package libpython3.13:amd64. Preparing to unpack .../122-libpython3.13_3.13.2-1_amd64.deb ... Unpacking libpython3.13:amd64 (3.13.2-1) ... Selecting previously unselected package libpython3.13-dev:amd64. Preparing to unpack .../123-libpython3.13-dev_3.13.2-1_amd64.deb ... Unpacking libpython3.13-dev:amd64 (3.13.2-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../124-libpython3-dev_3.13.1-2_amd64.deb ... Unpacking libpython3-dev:amd64 (3.13.1-2) ... 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Setting up media-types (11.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up libzstd-dev:amd64 (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:amd64 (3.12.9-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 27 08:08:06 UTC 2026. Universal Time is now: Fri Mar 27 08:08:06 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.22.0-1+b1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up comerr-dev:amd64 (2.1-1.47.2-1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up libssl-dev:amd64 (3.4.1-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-2) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-17) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libnghttp3-dev:amd64 (1.6.0-2) ... Setting up liblzma-dev:amd64 (5.6.3-1+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdeflate-dev:amd64 (1.23-1+b1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libngtcp2-dev:amd64 (1.9.1-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:amd64 (2.6.9+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libpython3.13:amd64 (3.13.2-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up python3-packaging (24.2-1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ... Setting up python3-humanfriendly (10.0-6) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:amd64 (1.21.3-4) ... Setting up libpython3.13-dev:amd64 (3.13.2-1) ... Setting up cython3 (3.0.11+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.3+ds-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-4) ... Setting up libgnutls28-dev:amd64 (3.8.9-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:amd64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-4) ... Setting up python3.13-dev (3.13.2-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-2) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.9.1-1) ... Setting up libpython3.12t64:amd64 (3.12.9-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.1-2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up krb5-multidev:amd64 (1.21.3-4) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up libpython3.12-dev:amd64 (3.12.9-1) ... Setting up libkrb5-dev:amd64 (1.21.3-4) ... Setting up libpython3-all-dev:amd64 (3.13.1-2) ... Setting up python3.12-dev (3.12.9-1) ... Setting up dh-python (6.20250108) ... Setting up python3-all-dev (3.13.1-2) ... Setting up libcurl4-gnutls-dev:amd64 (8.12.1-2) ... Setting up libhts-dev:amd64 (1.21+ds-1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cyvcf2-0.31.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cyvcf2_0.31.1-2_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.31.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from cyvcf2-0.31.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py clean warning: cyvcf2/cyvcf2.pyx:1377:36: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2079:17: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2278:29: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2350:15: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running clean removing '/build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-cyvcf2.substvars debian/files rm -fr -- debian/python3-cyvcf2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) rm -rf cyvcf2.egg-info cyvcf2/cyvcf2.c __o.vcf find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py config warning: cyvcf2/cyvcf2.pyx:1377:36: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2079:17: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2278:29: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2350:15: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running config I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.13" I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt writing manifest file 'cyvcf2.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL building 'cyvcf2.cyvcf2' extension creating build/temp.linux-x86_64-cpython-312/cyvcf2 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-cpython-312/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:1266: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-cpython-312/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/cyvcf2/cyvcf2.o build/temp.linux-x86_64-cpython-312/cyvcf2/helpers.o -L/usr/lib/x86_64-linux-gnu -lhts -o /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL building 'cyvcf2.cyvcf2' extension creating build/temp.linux-x86_64-cpython-313/cyvcf2 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.13 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-cpython-313/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:1266: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.13 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-cpython-313/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/cyvcf2/cyvcf2.o build/temp.linux-x86_64-cpython-313/cyvcf2/helpers.o -L/usr/lib/x86_64-linux-gnu -lhts -o /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' echo "cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually" cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually for tdir in .pybuild/cpython3_* ; do \ cp -a cyvcf2/tests ${tdir}/build/cyvcf2 ; \ done dh_auto_test pybuild --test --test-pytest -i python{version} -p "3.12 3.13" I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cyvcf2-0.31.1 configfile: setup.cfg plugins: typeguard-4.4.1 collected 112 items cyvcf2/tests/test_cli.py . [ 0%] cyvcf2/tests/test_hemi.py . [ 1%] cyvcf2/tests/test_reader.py ............................................ [ 41%] ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] ============================= 112 passed in 1.26s ============================== I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cyvcf2-0.31.1 configfile: setup.cfg plugins: typeguard-4.4.1 collected 112 items cyvcf2/tests/test_cli.py . [ 0%] cyvcf2/tests/test_hemi.py . [ 1%] cyvcf2/tests/test_reader.py ............................................ [ 41%] ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] ============================= 112 passed in 1.22s ============================== rm -fr -- /tmp/dh-xdg-rundir-KUlpeWY7 # clean up after testing find . -name out.vcf -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-cyvcf2.substvars rm -fr -- debian/.debhelper/generated/python3-cyvcf2/ debian/python3-cyvcf2/ debian/tmp/ dh_auto_install --destdir=debian/python3-cyvcf2/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 pybuild --install -i python{version} -p "3.12 3.13" --dest-dir=/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL running install_lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2-0.31.1.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL running install_lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2-0.31.1.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' dh_numpy3 mv debian/python3-cyvcf2.substvars.new debian/python3-cyvcf2.substvars dh_install make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/copyright debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/.debhelper/generated/python3-cyvcf2/dh_installchangelogs.dch.trimmed debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog.Debian install -p -m0644 ./CHANGES.md debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' PATH=$PATH:/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin \ PYTHONPATH=/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/ \ help2man --no-info \ --name="fast parsing of VCF and BCF including region-queries" \ --version-string=0.31.1 cyvcf2 > debian/cyvcf2.1 dh_installman install -m0755 -d debian/python3-cyvcf2/usr/share/man/man1/ install -p -m0644 ./debian/cyvcf2.1 debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 mv debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1.dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 chmod 0644 -- debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13) D: dh_python3 debhelper:174: source=cyvcf2, binary packages=['python3-cyvcf2'] D: dh_python3 dh_python3:205: processing package python3-cyvcf2... D: dh_python3 fs:50: moving files from debian/python3-cyvcf2/usr/lib/python3.12/dist-packages to debian/python3-cyvcf2/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-cyvcf2/usr/lib/python3.13/dist-packages to debian/python3-cyvcf2/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-cyvcf2 details = {'requires.txt': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.31.1.egg-info/requires.txt'}, 'egg-info': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.31.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-cyvcf2 D: dh_python3 pydist:175: trying to find dependency for click (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for coloredlogs (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for numpy>=1.16.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3-coloredlogs', 'python3:any', 'python3 (<< 3.14)', 'python3-numpy', 'python3-click'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-cyvcf2 chmod a-x usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 gzip -9nf usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 cd '/build/reproducible-path/cyvcf2-0.31.1' dh_fixperms -O--buildsystem=pybuild find debian/python3-cyvcf2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cyvcf2/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cyvcf2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cyvcf2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cyvcf2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug -- debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug chmod 0644 -- debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cyvcf2/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cyvcf2/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc ln -s python3-cyvcf2 debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc/python3-cyvcf2-dbgsym install -m0755 -d debian/.debhelper/python3-cyvcf2 dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-cyvcf2/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN dpkg-shlibdeps -Tdebian/python3-cyvcf2.substvars debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/postinst cat debian/python3-cyvcf2.postinst.debhelper >> debian/python3-cyvcf2/DEBIAN/postinst chmod 0755 -- debian/python3-cyvcf2/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/prerm cat debian/python3-cyvcf2.prerm.debhelper >> debian/python3-cyvcf2/DEBIAN/prerm chmod 0755 -- debian/python3-cyvcf2/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN echo misc:Depends= >> debian/python3-cyvcf2.substvars echo misc:Pre-Depends= >> debian/python3-cyvcf2.substvars install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/.debhelper/python3-cyvcf2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cyvcf2-dbgsym "-DDepends=python3-cyvcf2 (= \${binary:Version})" "-DDescription=debug symbols for python3-cyvcf2" "-DBuild-Ids=0dc0f45c583b2aab36f5b0742c5cdfef375389e8 7132c2b6efe3a75e7039103dccee5899ecba7921" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/python3-cyvcf2 chmod 0644 -- debian/python3-cyvcf2/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN cd debian/python3-cyvcf2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-cyvcf2/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cyvcf2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-cyvcf2 .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cyvcf2/dbgsym-root .. dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb'. dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.31.1-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cyvcf2_0.31.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../cyvcf2_0.31.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from cyvcf2-0.31.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2663571 and its subdirectories I: Current time: Thu Mar 26 20:10:15 -12 2026 I: pbuilder-time-stamp: 1774599015 Sat Feb 22 01:47:16 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat Feb 22 01:47:16 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat Feb 22 01:47:16 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sat Feb 22 01:47:16 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-thzymq' ==================================================================================== Sat Feb 22 01:47:18 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 cyvcf2 unstable /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp 0.31.1-2" as arguments. Sat Feb 22 01:47:18 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-eQoNnGhi" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 01:47:18 UTC 2025 I: Downloading source for unstable/cyvcf2=0.31.1-2 Reading package lists... NOTICE: 'cyvcf2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/cyvcf2.git Please use: git clone https://salsa.debian.org/med-team/cyvcf2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 430 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (dsc) [2337 B] Get:2 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (tar) [420 kB] Get:3 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (diff) [6764 B] Fetched 430 kB in 0s (6144 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'cyvcf2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/cyvcf2.git Please use: git clone https://salsa.debian.org/med-team/cyvcf2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 430 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (dsc) [2337 B] Get:2 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (tar) [420 kB] Get:3 http://deb.debian.org/debian unstable/main cyvcf2 0.31.1-2 (diff) [6764 B] Fetched 430 kB in 0s (6144 kB/s) Download complete and in download only mode ============================================================================= Re-Building cyvcf2 in unstable on amd64 on ionos11-amd64 now. Date: Sat Feb 22 01:47:18 UTC 2025 Date UTC: Sat Feb 22 01:47:19 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/pbuilderrc_58Cy + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' cyvcf2 = debian-installer -o cyvcf2 = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' cyvcf2 = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/pbuilderrc_58Cy --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b2 --logfile b2/build.log cyvcf2_0.31.1-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 22 15:47:19 +14 2025 I: pbuilder-time-stamp: 1740188839 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cyvcf2_0.31.1-2.dsc] I: copying [./cyvcf2_0.31.1.orig.tar.gz] I: copying [./cyvcf2_0.31.1-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.1-2.dsc: unsupported subcommand dpkg-source: info: extracting cyvcf2 in cyvcf2-0.31.1 dpkg-source: info: unpacking cyvcf2_0.31.1.orig.tar.gz dpkg-source: info: unpacking cyvcf2_0.31.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/654269/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 22 01:47 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/654269/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/654269/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=d91aeb38567840de8c40f35aada30115 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=654269 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/pbuilderrc_58Cy --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b2 --logfile b2/build.log cyvcf2_0.31.1-2.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/654269/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, cython3, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-pytest, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-coloredlogs; however: Package python3-coloredlogs is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-openssl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-openssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} libldap-dev{a} libldap2{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-click{a} python3-coloredlogs{a} python3-dev{a} python3-humanfriendly{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-pygments wget 0 packages upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 84.7 MB of archives. After unpacking 353 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 11.0.0 [27.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-2 [138 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-17 [836 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.3+ds-2 [7517 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-2 [3159 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 47 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-2 [365 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.9.1-1 [23.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.9.1-1 [167 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.12.1-2 [479 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.23-1+b1 [56.0 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.9-1 [2151 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.9-1 [5125 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.1-2 [1072 B] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.9-1 [505 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.1-2 [1076 B] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.2.0-1 [98.7 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] Fetched 84.7 MB in 4s (18.9 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:amd64 (3.13.2-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20124 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_11.0.0_all.deb ... Unpacking media-types (11.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21134 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_amd64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-2_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_14.2.0-17_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-17) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-2_amd64.deb ... Unpacking python3-numpy (1:2.2.3+ds-2) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../006-libpython3.12-minimal_3.12.9-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.9-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../121-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package libpython3.13:amd64. Preparing to unpack .../122-libpython3.13_3.13.2-1_amd64.deb ... Unpacking libpython3.13:amd64 (3.13.2-1) ... Selecting previously unselected package libpython3.13-dev:amd64. Preparing to unpack .../123-libpython3.13-dev_3.13.2-1_amd64.deb ... Unpacking libpython3.13-dev:amd64 (3.13.2-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../124-libpython3-dev_3.13.1-2_amd64.deb ... Unpacking libpython3-dev:amd64 (3.13.1-2) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../125-libpython3.12-stdlib_3.12.9-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.9-1) ... Selecting previously unselected package libpython3.12t64:amd64. Preparing to unpack .../126-libpython3.12t64_3.12.9-1_amd64.deb ... Unpacking libpython3.12t64:amd64 (3.12.9-1) ... Selecting previously unselected package libpython3.12-dev:amd64. Preparing to unpack .../127-libpython3.12-dev_3.12.9-1_amd64.deb ... Unpacking libpython3.12-dev:amd64 (3.12.9-1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../128-libpython3-all-dev_3.13.1-2_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.13.1-2) ... Selecting previously unselected package python3.12. Preparing to unpack .../129-python3.12_3.12.9-1_amd64.deb ... Unpacking python3.12 (3.12.9-1) ... Selecting previously unselected package python3-all. 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Setting up media-types (11.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up libzstd-dev:amd64 (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:amd64 (3.12.9-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 22 01:51:20 UTC 2025. Universal Time is now: Sat Feb 22 01:51:20 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.22.0-1+b1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up comerr-dev:amd64 (2.1-1.47.2-1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up libssl-dev:amd64 (3.4.1-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-2) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-17) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libnghttp3-dev:amd64 (1.6.0-2) ... Setting up liblzma-dev:amd64 (5.6.3-1+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdeflate-dev:amd64 (1.23-1+b1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libngtcp2-dev:amd64 (1.9.1-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:amd64 (2.6.9+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libpython3.13:amd64 (3.13.2-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up python3-packaging (24.2-1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ... Setting up python3-humanfriendly (10.0-6) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:amd64 (1.21.3-4) ... Setting up libpython3.13-dev:amd64 (3.13.2-1) ... Setting up cython3 (3.0.11+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.3+ds-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-4) ... Setting up libgnutls28-dev:amd64 (3.8.9-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:amd64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-4) ... Setting up python3.13-dev (3.13.2-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-2) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.9.1-1) ... Setting up libpython3.12t64:amd64 (3.12.9-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.1-2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up krb5-multidev:amd64 (1.21.3-4) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up libpython3.12-dev:amd64 (3.12.9-1) ... Setting up libkrb5-dev:amd64 (1.21.3-4) ... Setting up libpython3-all-dev:amd64 (3.13.1-2) ... Setting up python3.12-dev (3.12.9-1) ... Setting up dh-python (6.20250108) ... Setting up python3-all-dev (3.13.1-2) ... Setting up libcurl4-gnutls-dev:amd64 (8.12.1-2) ... Setting up libhts-dev:amd64 (1.21+ds-1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/654269/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/654269/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/cyvcf2-0.31.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cyvcf2_0.31.1-2_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.31.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from cyvcf2-0.31.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py clean warning: cyvcf2/cyvcf2.pyx:1377:36: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2079:17: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2278:29: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2350:15: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running clean removing '/build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-cyvcf2.substvars debian/files rm -fr -- debian/python3-cyvcf2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) rm -rf cyvcf2.egg-info cyvcf2/cyvcf2.c __o.vcf find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py config warning: cyvcf2/cyvcf2.pyx:1377:36: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2079:17: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2278:29: Assigning to 'char *' from 'const char *' discards const qualifier warning: cyvcf2/cyvcf2.pyx:2350:15: Assigning to 'bcf_hdr_t *' from 'const bcf_hdr_t *' discards const qualifier Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running config I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.13" I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt writing manifest file 'cyvcf2.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL building 'cyvcf2.cyvcf2' extension creating build/temp.linux-x86_64-cpython-312/cyvcf2 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-cpython-312/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:1266: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.12 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-cpython-312/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/cyvcf2/cyvcf2.o build/temp.linux-x86_64-cpython-312/cyvcf2/helpers.o -L/usr/lib/x86_64-linux-gnu -lhts -o /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL building 'cyvcf2.cyvcf2' extension creating build/temp.linux-x86_64-cpython-313/cyvcf2 x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.13 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-cpython-313/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:1266: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.13 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-cpython-313/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/cyvcf2/cyvcf2.o build/temp.linux-x86_64-cpython-313/cyvcf2/helpers.o -L/usr/lib/x86_64-linux-gnu -lhts -o /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' echo "cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually" cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually for tdir in .pybuild/cpython3_* ; do \ cp -a cyvcf2/tests ${tdir}/build/cyvcf2 ; \ done dh_auto_test pybuild --test --test-pytest -i python{version} -p "3.12 3.13" I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cyvcf2-0.31.1 configfile: setup.cfg plugins: typeguard-4.4.1 collected 112 items cyvcf2/tests/test_cli.py . [ 0%] cyvcf2/tests/test_hemi.py . [ 1%] cyvcf2/tests/test_reader.py ............................................ [ 41%] ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] ============================= 112 passed in 16.97s ============================= I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cyvcf2-0.31.1 configfile: setup.cfg plugins: typeguard-4.4.1 collected 112 items cyvcf2/tests/test_cli.py . [ 0%] cyvcf2/tests/test_hemi.py . [ 1%] cyvcf2/tests/test_reader.py ............................................ [ 41%] ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] ============================= 112 passed in 16.32s ============================= rm -fr -- /tmp/dh-xdg-rundir-MZRae49o # clean up after testing find . -name out.vcf -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-cyvcf2.substvars rm -fr -- debian/.debhelper/generated/python3-cyvcf2/ debian/python3-cyvcf2/ debian/tmp/ dh_auto_install --destdir=debian/python3-cyvcf2/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 pybuild --install -i python{version} -p "3.12 3.13" --dest-dir=/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL running install_lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__main__.py to __main__.cpython-312.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2-0.31.1.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'cyvcf2/tests' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running build_ext # cyvcf2: htslib mode is EXTERNAL running install_lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__main__.py to __main__.cpython-313.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2-0.31.1.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' dh_numpy3 mv debian/python3-cyvcf2.substvars.new debian/python3-cyvcf2.substvars dh_install make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/copyright debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2 install -p -m0644 debian/.debhelper/generated/python3-cyvcf2/dh_installchangelogs.dch.trimmed debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog.Debian install -p -m0644 ./CHANGES.md debian/python3-cyvcf2/usr/share/doc/python3-cyvcf2/changelog rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.1' PATH=$PATH:/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/bin \ PYTHONPATH=/build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/ \ help2man --no-info \ --name="fast parsing of VCF and BCF including region-queries" \ --version-string=0.31.1 cyvcf2 > debian/cyvcf2.1 dh_installman install -m0755 -d debian/python3-cyvcf2/usr/share/man/man1/ install -p -m0644 ./debian/cyvcf2.1 debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 mv debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1.dh-new debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 chmod 0644 -- debian/python3-cyvcf2/usr/share/man/man1/cyvcf2.1 make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13) D: dh_python3 debhelper:174: source=cyvcf2, binary packages=['python3-cyvcf2'] D: dh_python3 dh_python3:205: processing package python3-cyvcf2... D: dh_python3 fs:50: moving files from debian/python3-cyvcf2/usr/lib/python3.12/dist-packages to debian/python3-cyvcf2/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-cyvcf2/usr/lib/python3.13/dist-packages to debian/python3-cyvcf2/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-cyvcf2 details = {'requires.txt': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.31.1.egg-info/requires.txt'}, 'egg-info': {'debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2-0.31.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-cyvcf2 D: dh_python3 pydist:175: trying to find dependency for click (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for coloredlogs (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for numpy>=1.16.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3:any', 'python3 (<< 3.14)', 'python3-coloredlogs', 'python3-click', 'python3-numpy'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-cyvcf2 chmod a-x usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 gzip -9nf usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 cd '/build/reproducible-path/cyvcf2-0.31.1' dh_fixperms -O--buildsystem=pybuild find debian/python3-cyvcf2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cyvcf2/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cyvcf2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cyvcf2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cyvcf2/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cyvcf2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug -- debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug chmod 0644 -- debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cyvcf2/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cyvcf2/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc ln -s python3-cyvcf2 debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/share/doc/python3-cyvcf2-dbgsym install -m0755 -d debian/.debhelper/python3-cyvcf2 dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-cyvcf2/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN dpkg-shlibdeps -Tdebian/python3-cyvcf2.substvars debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/postinst cat debian/python3-cyvcf2.postinst.debhelper >> debian/python3-cyvcf2/DEBIAN/postinst chmod 0755 -- debian/python3-cyvcf2/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/prerm cat debian/python3-cyvcf2.prerm.debhelper >> debian/python3-cyvcf2/DEBIAN/prerm chmod 0755 -- debian/python3-cyvcf2/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN echo misc:Depends= >> debian/python3-cyvcf2.substvars echo misc:Pre-Depends= >> debian/python3-cyvcf2.substvars install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/.debhelper/python3-cyvcf2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cyvcf2-dbgsym "-DDepends=python3-cyvcf2 (= \${binary:Version})" "-DDescription=debug symbols for python3-cyvcf2" "-DBuild-Ids=0dc0f45c583b2aab36f5b0742c5cdfef375389e8 7132c2b6efe3a75e7039103dccee5899ecba7921" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cyvcf2 -ldebian/changelog -Tdebian/python3-cyvcf2.substvars -cdebian/control -Pdebian/python3-cyvcf2 chmod 0644 -- debian/python3-cyvcf2/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN cd debian/python3-cyvcf2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-cyvcf2/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cyvcf2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/.debhelper/python3-cyvcf2/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-cyvcf2 .. dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.31.1-2_amd64.deb'. dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cyvcf2_0.31.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../cyvcf2_0.31.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from cyvcf2-0.31.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/654269/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/654269/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/654269 and its subdirectories I: Current time: Sat Feb 22 16:10:47 +14 2025 I: pbuilder-time-stamp: 1740190247 + false + set +x Sat Feb 22 02:10:47 UTC 2025 I: Signing ./b2/cyvcf2_0.31.1-2_amd64.buildinfo as cyvcf2_0.31.1-2_amd64.buildinfo.asc Sat Feb 22 02:10:47 UTC 2025 I: Signed ./b2/cyvcf2_0.31.1-2_amd64.buildinfo as ./b2/cyvcf2_0.31.1-2_amd64.buildinfo.asc Sat Feb 22 02:10:47 UTC 2025 - build #2 for cyvcf2/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Sat Feb 22 02:10:47 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-eQoNnGhi, removing. /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp: total 148 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 01:47 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 02:10 b2 -rw-r--r-- 1 jenkins jenkins 2337 Jul 31 2024 cyvcf2_0.31.1-2.dsc -rw------- 1 jenkins jenkins 134838 Feb 22 01:47 rbuildlog.ujWmpGE /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b1: total 4312 -rw-r--r-- 1 jenkins jenkins 131112 Feb 22 01:47 build.log -rw-r--r-- 1 jenkins jenkins 6764 Feb 22 01:47 cyvcf2_0.31.1-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2337 Feb 22 01:47 cyvcf2_0.31.1-2.dsc -rw-r--r-- 1 jenkins jenkins 8964 Feb 22 01:47 cyvcf2_0.31.1-2_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9846 Feb 22 01:47 cyvcf2_0.31.1-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1485 Feb 22 01:47 cyvcf2_0.31.1-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 1282 Feb 22 01:47 cyvcf2_0.31.1-2_source.changes -rw-r--r-- 1 jenkins jenkins 3148916 Feb 22 01:47 python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1070324 Feb 22 01:47 python3-cyvcf2_0.31.1-2_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b2: total 4300 -rw-r--r-- 1 jenkins jenkins 133023 Feb 22 02:10 build.log -rw-r--r-- 1 jenkins jenkins 6764 Feb 22 02:10 cyvcf2_0.31.1-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2337 Feb 22 02:10 cyvcf2_0.31.1-2.dsc -rw-r--r-- 1 jenkins jenkins 8955 Feb 22 02:10 cyvcf2_0.31.1-2_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9837 Feb 22 02:10 cyvcf2_0.31.1-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1485 Feb 22 02:10 cyvcf2_0.31.1-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 1282 Feb 22 02:10 cyvcf2_0.31.1-2_source.changes -rw-r--r-- 1 jenkins jenkins 3148916 Feb 22 02:10 python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1070324 Feb 22 02:10 python3-cyvcf2_0.31.1-2_amd64.deb Sat Feb 22 02:10:48 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat Feb 22 02:10:48 UTC 2025 I: cyvcf2_0.31.1-2_amd64.changes: Format: 1.8 Date: Wed, 31 Jul 2024 11:37:47 +0200 Source: cyvcf2 Binary: python3-cyvcf2 python3-cyvcf2-dbgsym Architecture: amd64 Version: 0.31.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python3-cyvcf2 - VCF parser based on htslib (Python 3) Changes: cyvcf2 (0.31.1-2) unstable; urgency=medium . * Team upload. * d/control: switch to cython3 3.x from the deprecated cython3-legacy. * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: e732ff3c8b033ec79f1d663fb6ad3b6efcae6d98 8964 cyvcf2_0.31.1-2_amd64.buildinfo a9e3e1db00b3987d54af2eae7fad0d5eb9b11085 3148916 python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb f8e24cf9ca5d59aa63934576be70457e21e7da1d 1070324 python3-cyvcf2_0.31.1-2_amd64.deb Checksums-Sha256: 3223a58f810650391e3ee36a2d9cf2e2e187b18feec299fb1b46853d4a6a4a9b 8964 cyvcf2_0.31.1-2_amd64.buildinfo 76acd0d1871c0fc76fd71cc410d58402647806761cb948223e4c433e57b993a5 3148916 python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb 9162569a95071702f25d4ccecc920b15a23e58d7969168dc40b360319fc18700 1070324 python3-cyvcf2_0.31.1-2_amd64.deb Files: 26fe737446fce7038cc06dda0c38b0db 8964 science optional cyvcf2_0.31.1-2_amd64.buildinfo 522dfa388a4ce32066e55ebc9fcaa3fd 3148916 debug optional python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb ecaef757fcdaabc8e2f7ba3f34619199 1070324 python optional python3-cyvcf2_0.31.1-2_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/cyvcf2_0.31.1-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/cyvcf2_0.31.1-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/cyvcf2_0.31.1-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/cyvcf2_0.31.1-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/cyvcf2_0.31.1-2_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/cyvcf2_0.31.1-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 01:47:16.369773405 +0000 +++ b2/build.log 2025-02-22 02:10:47.950020176 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Mar 26 20:07:13 -12 2026 -I: pbuilder-time-stamp: 1774598833 +I: Current time: Sat Feb 22 15:47:19 +14 2025 +I: pbuilder-time-stamp: 1740188839 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying i386.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2663571/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/654269/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 22 01:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/654269/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/654269/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='842b68566e054009aa8f408fa5eb80c4' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2663571' - PS1='# ' - PS2='> ' + INVOCATION_ID=d91aeb38567840de8c40f35aada30115 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=654269 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/pbuilderrc_Fc5t --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b1 --logfile b1/build.log cyvcf2_0.31.1-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/pbuilderrc_58Cy --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b2 --logfile b2/build.log cyvcf2_0.31.1-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2663571/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/654269/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -290,7 +322,7 @@ Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] -Fetched 84.7 MB in 8s (10.1 MB/s) +Fetched 84.7 MB in 4s (18.9 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) @@ -800,8 +832,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Mar 27 08:08:06 UTC 2026. -Universal Time is now: Fri Mar 27 08:08:06 UTC 2026. +Local time is now: Sat Feb 22 01:51:20 UTC 2025. +Universal Time is now: Sat Feb 22 01:51:20 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -945,7 +977,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/cyvcf2-0.31.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cyvcf2_0.31.1-2_source.changes +I: user script /srv/workspace/pbuilder/654269/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/654269/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/cyvcf2-0.31.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cyvcf2_0.31.1-2_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.31.1-2 dpkg-buildpackage: info: source distribution unstable @@ -1016,9 +1052,9 @@ running build running build_py creating /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 -copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 -copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 +copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 +copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2 running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO @@ -1074,9 +1110,9 @@ running build running build_py creating /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 -copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 -copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 +copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 +copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt @@ -1149,7 +1185,7 @@ ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] -============================= 112 passed in 1.26s ============================== +============================= 112 passed in 16.97s ============================= I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 @@ -1164,8 +1200,8 @@ ....................................................... [ 90%] cyvcf2/tests/test_writer.py ........... [100%] -============================= 112 passed in 1.22s ============================== - rm -fr -- /tmp/dh-xdg-rundir-KUlpeWY7 +============================= 112 passed in 16.32s ============================= + rm -fr -- /tmp/dh-xdg-rundir-MZRae49o # clean up after testing find . -name out.vcf -delete make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.1' @@ -1229,76 +1265,76 @@ running install_lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__pycache__ +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__pycache__ +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.12_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2 -byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__main__.py to __main__.cpython-312.pyc +byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/cli.py to cli.cpython-312.pyc +byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-312.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-312.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-312.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-312.pyc +byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2/__main__.py to __main__.cpython-312.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.12/dist-packages/cyvcf2-0.31.1.egg-info Skipping SOURCES.txt @@ -1356,76 +1392,76 @@ running install_lib creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 creating /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.1/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__main__.py to __main__.cpython-313.pyc +byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/cli.py to cli.cpython-313.pyc +byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-313.pyc +byte-compiling /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__main__.py to __main__.cpython-313.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.1/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2-0.31.1.egg-info Skipping SOURCES.txt @@ -1480,7 +1516,7 @@ D: dh_python3 pydist:175: trying to find dependency for numpy>=1.16.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3-coloredlogs', 'python3:any', 'python3 (<< 3.14)', 'python3-numpy', 'python3-click'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3:any', 'python3 (<< 3.14)', 'python3-coloredlogs', 'python3-click', 'python3-numpy'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -1505,16 +1541,16 @@ objcopy --compress-debug-sections debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug chmod 0644 -- debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cyvcf2.debug dh_strip -a -O--buildsystem=pybuild - install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d - objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug - chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/71/32c2b6efe3a75e7039103dccee5899ecba7921.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d + objcopy --only-keep-debug --compress-debug-sections debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug + chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.build-id/0d/c0f45c583b2aab36f5b0742c5cdfef375389e8.debug debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cyvcf2/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-cyvcf2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cyvcf2/usr/lib/debug/.dwz @@ -1526,7 +1562,7 @@ rm -f debian/python3-cyvcf2/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN - dpkg-shlibdeps -Tdebian/python3-cyvcf2.substvars debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so + dpkg-shlibdeps -Tdebian/python3-cyvcf2.substvars debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-312-x86_64-linux-gnu.so debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-cyvcf2/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cyvcf2/DEBIAN/postinst @@ -1552,10 +1588,10 @@ cd debian/.debhelper/python3-cyvcf2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cyvcf2/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild - dpkg-deb --root-owner-group --build debian/python3-cyvcf2 .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cyvcf2/dbgsym-root .. -dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb'. + dpkg-deb --root-owner-group --build debian/python3-cyvcf2 .. dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.31.1-2_amd64.deb'. +dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.31.1-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cyvcf2_0.31.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../cyvcf2_0.31.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1564,12 +1600,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/654269/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/654269/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2663571 and its subdirectories -I: Current time: Thu Mar 26 20:10:15 -12 2026 -I: pbuilder-time-stamp: 1774599015 +I: removing directory /srv/workspace/pbuilder/654269 and its subdirectories +I: Current time: Sat Feb 22 16:10:47 +14 2025 +I: pbuilder-time-stamp: 1740190247 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/cyvcf2_0.31.1-2.diff: 90.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/cyvcf2_0.31.1-2.diff.gz b2/build.log: 86.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 87.0% -- replaced with stdout Sat Feb 22 02:10:49 UTC 2025 I: diffoscope 288 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_cyvcf2_unstable_amd64_1740190249 + touch /var/log/reproducible-builds/diffoscope_stamp_cyvcf2_unstable_amd64_1740190249 + RESULT=0 + systemd-run '--description=diffoscope on cyvcf2/0.31.1-2 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_24-49069 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp --run-session -c jenkins-reproducible-unstable-diffoscope-80871848-106a-4ffb-8d66-a86b1ab7608c -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/dbd-tmp-DTZ9CaC ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/cyvcf2_0.31.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/cyvcf2_0.31.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/cyvcf2_0.31.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b1/cyvcf2_0.31.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b2/cyvcf2_0.31.1-2_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_24-49069.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/cyvcf2_0.31.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/cyvcf2_0.31.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/cyvcf2_0.31.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b1/cyvcf2_0.31.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.DSo5mtCp/b2/cyvcf2_0.31.1-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 266ms CPU time consumed: 259ms __ ____ ___ _ ___ _____ / _|___ \ / __| | | \ \ / / __| |_ __) | | (__| |_| |\ V / (__| _|/ __/ \___|\__, | \_/ \___|_| |_____| |___/ Sat Feb 22 02:10:50 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 02:10:50 UTC 2025 I: cyvcf2 from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 02:10:50] INFO: Starting at 2025-02-22 02:10:50.969958 [2025-02-22 02:10:51] INFO: Generating the pages of 1 package(s) [2025-02-22 02:10:51] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/cyvcf2 didn't produce a buildlog, even though it has been built. [2025-02-22 02:10:51] INFO: Finished at 2025-02-22 02:10:51.407049, took: 0:00:00.437097 Sat Feb 22 02:10:51 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/cyvcf2.html Sat Feb 22 02:10:51 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 02:10:51 UTC 2025 I: Submitting 12K b1/cyvcf2_0.31.1-2_amd64.buildinfo.asc https://buildinfo.debian.net/e732ff3c8b033ec79f1d663fb6ad3b6efcae6d98/cyvcf2_0.31.1-2_amd64 Sat Feb 22 02:10:52 UTC 2025 I: Submitting 12K b2/cyvcf2_0.31.1-2_amd64.buildinfo.asc https://buildinfo.debian.net/a17357f438b75824fa6563fdc8747161f3a1e08c/cyvcf2_0.31.1-2_amd64 Sat Feb 22 02:10:54 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 02:10:54 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 02:10:54 UTC 2025 I: Removing signed cyvcf2_0.31.1-2_amd64.buildinfo.asc files: removed './b1/cyvcf2_0.31.1-2_amd64.buildinfo.asc' removed './b2/cyvcf2_0.31.1-2_amd64.buildinfo.asc' 1740190254 amd64 unstable cyvcf2 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/cyvcf2_0.31.1-2.rbuild.log: 85.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/cyvcf2_0.31.1-2.rbuild.log.gz [2025-02-22 02:10:54] INFO: Starting at 2025-02-22 02:10:54.451396 [2025-02-22 02:10:54] INFO: Generating the pages of 1 package(s) [2025-02-22 02:10:54] INFO: Finished at 2025-02-22 02:10:54.930908, took: 0:00:00.479520 All cleanup done. Sat Feb 22 02:10:55 UTC 2025 - total duration: 0h 26m 51s. Sat Feb 22 02:10:55 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Efcenk1I, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 26min 55.779s CPU time consumed: 7.341s