Running as unit: rb-build-amd64_24-67835.service ==================================================================================== Thu Jul 31 13:50:04 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_24) on jenkins, called using "ionos15-amd64 ionos11-amd64" as arguments. Thu Jul 31 13:50:04 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-bd9QDeSN" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jul 31 13:50:04 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Jul 31 13:50:04 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-WUIuSp' Thu Jul 31 13:50:05 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Jul 31 13:50:05 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-9NJL0W' ok, let's check if adapterremoval is building anywhere yet… ok, adapterremoval is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of adapterremoval in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Thu Jul 31 13:50:15 UTC 2025 I: starting to build adapterremoval/unstable/amd64 on jenkins on '2025-07-31 13:50' Thu Jul 31 13:50:15 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/67835/console.log 1753969815 amd64 unstable adapterremoval Thu Jul 31 13:50:15 UTC 2025 I: Downloading source for unstable/adapterremoval=2.3.4-1 --2025-07-31 13:50:15-- http://deb.debian.org/debian/pool/main/a/adapterremoval/adapterremoval_2.3.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2330 (2.3K) [text/prs.lines.tag] Saving to: ‘adapterremoval_2.3.4-1.dsc’ 0K .. 100% 298M=0s 2025-07-31 13:50:15 (298 MB/s) - ‘adapterremoval_2.3.4-1.dsc’ saved [2330/2330] --2025-07-31 13:50:15-- http://deb.debian.org/debian/pool/main/a/adapterremoval/adapterremoval_2.3.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2330 (2.3K) [text/prs.lines.tag] Saving to: ‘adapterremoval_2.3.4-1.dsc’ 0K .. 100% 298M=0s 2025-07-31 13:50:15 (298 MB/s) - ‘adapterremoval_2.3.4-1.dsc’ saved [2330/2330] Thu Jul 31 13:50:15 UTC 2025 I: adapterremoval_2.3.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: adapterremoval Binary: adapterremoval, adapterremoval-examples Architecture: any all Version: 2.3.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Kevin Murray Homepage: https://github.com/MikkelSchubert/adapterremoval Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/adapterremoval Vcs-Git: https://salsa.debian.org/med-team/adapterremoval.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, libgtest-dev, discount Package-List: adapterremoval deb science optional arch=any adapterremoval-examples deb science optional arch=all Checksums-Sha1: 292bec702a6a2a963ff305cbe231aab966704de3 725739 adapterremoval_2.3.4.orig.tar.gz e4078e9d2c46a50487b8635b89added876cd577e 5488 adapterremoval_2.3.4-1.debian.tar.xz Checksums-Sha256: a4433a45b73ead907aede22ed0c7ea6fbc080f6de6ed7bc00f52173dfb309aa1 725739 adapterremoval_2.3.4.orig.tar.gz a197ce19c25bcf9010f175cde523a22aa0770a065c9ab650850a1067be1257c2 5488 adapterremoval_2.3.4-1.debian.tar.xz Files: e0f89145a05daa011f01d3f7ad00b162 725739 adapterremoval_2.3.4.orig.tar.gz b5e5026258f180f18a014e7fc397544a 5488 adapterremoval_2.3.4-1.debian.tar.xz Dgit: 82a2796e96b6505b7f2e3d1cca44084f28773ed5 debian archive/debian/2.3.4-1 https://git.dgit.debian.org/adapterremoval -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmfDAQcUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdouaA//f/UHVGtQ+bUNoqIp3qWocx+i1EZH UZaLgYaagwHZk1YiEleCUPhBZDmGlD4IyvNA+mBZ6ZEElySU6Ukr808Kv9fO9U29 4dAffbK3taBYqYi96TYXjPXZaQLDUlrAiimHNDxBR/UEFq0E8f2xuUSuPlQ+sFyY kTZ98KYBNhivJ29S0hfYYrJjjMBegJH8VfKm9HbnQpu42c/QQb3p+owpBYaozavt KDT/2YfEWzVK3h30Ti1hDar6tcjgJL+eLaEPaMtLoCtW4ts1d4Hgzy7SGZxkOjGP iU1zwp73woiSd2ELh/RfjqbVMpnvvIbwOQA4QtGWxga4NczUHpG4ifBRxvy1PJCK PgLAt1QH3L1JkoL2ROu0sZODR1NERNyrCsUTyrQtRii4dXiAJy9JJRZXNqtKopI3 aS9oHg7+42k1SeFyQdQwLd2pqVo0/FYPOiXd/BMvk00KwLV5AwiXTtEaNmWLzyU7 0DxqvnKFcBsRa/vxMpGKAjjbbxJ5jw9OpY+19sUg7cxScswEg9KEc6QqCZIhIGDS ry1dddBYzMcQvo0/1qGng/0Id6+FRO65xejQEmohg0QYm2VHpuhlo1kxEAl/mmge BthW6svuaPgXYvMBexPSDlTviCK5FbbIXtUza0bvEUQf9U7f2ibFB9b2dzegAbTD 24Q0PH2FEcjndU0= =G/PV -----END PGP SIGNATURE----- Thu Jul 31 13:50:15 UTC 2025 I: Checking whether the package is not for us Thu Jul 31 13:50:15 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu Jul 31 13:50:15 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu Jul 31 13:50:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Jul 31 13:50:15 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-9LQnl4' ==================================================================================== Wed Sep 2 20:13:16 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 adapterremoval unstable /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm 2.3.4-1" as arguments. Wed Sep 2 20:13:16 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-jRm18GCI" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Sep 2 20:13:16 UTC 2026 I: Downloading source for unstable/adapterremoval=2.3.4-1 Reading package lists... NOTICE: 'adapterremoval' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/adapterremoval.git Please use: git clone https://salsa.debian.org/med-team/adapterremoval.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 734 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (dsc) [2330 B] Get:2 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (tar) [726 kB] Get:3 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (diff) [5488 B] Fetched 734 kB in 0s (26.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'adapterremoval' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/adapterremoval.git Please use: git clone https://salsa.debian.org/med-team/adapterremoval.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 734 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (dsc) [2330 B] Get:2 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (tar) [726 kB] Get:3 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (diff) [5488 B] Fetched 734 kB in 0s (26.2 MB/s) Download complete and in download only mode ============================================================================= Building adapterremoval in unstable on amd64 on ionos15-amd64 now. Date: Wed Sep 2 20:13:16 UTC 2026 Date UTC: Wed Sep 2 20:13:16 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 2 08:13:16 -12 2026 I: pbuilder-time-stamp: 1788379996 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [adapterremoval_2.3.4-1.dsc] I: copying [./adapterremoval_2.3.4.orig.tar.gz] I: copying [./adapterremoval_2.3.4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./adapterremoval_2.3.4-1.dsc: no acceptable signature found dpkg-source: info: extracting adapterremoval in adapterremoval-2.3.4 dpkg-source: info: unpacking adapterremoval_2.3.4.orig.tar.gz dpkg-source: info: unpacking adapterremoval_2.3.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy-breaches.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2636775/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f9d5f49c21864ac98a04059fa588dbfb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2636775' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/pbuilderrc_8BfP --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b1 --logfile b1/build.log adapterremoval_2.3.4-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2636775/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, libgtest-dev, discount dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on discount; however: Package discount is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} discount{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbz2-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libmagic-mgc{a} libmagic1t64{a} libmarkdown2{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 13.0 MB of archives. After unpacking 49.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 discount amd64 2.2.7-2.1 [24.6 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 googletest all 1.16.0-1 [517 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 13.0 MB in 0s (29.4 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libmarkdown2:amd64. Preparing to unpack .../29-libmarkdown2_2.2.7-2.1_amd64.deb ... Unpacking libmarkdown2:amd64 (2.2.7-2.1) ... Selecting previously unselected package discount. Preparing to unpack .../30-discount_2.2.7-2.1_amd64.deb ... Unpacking discount (2.2.7-2.1) ... Selecting previously unselected package googletest. Preparing to unpack .../31-googletest_1.16.0-1_all.deb ... Unpacking googletest (1.16.0-1) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../32-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libgtest-dev:amd64. Preparing to unpack .../33-libgtest-dev_1.16.0-1_amd64.deb ... Unpacking libgtest-dev:amd64 (1.16.0-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up googletest (1.16.0-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libmarkdown2:amd64 (2.2.7-2.1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libgtest-dev:amd64 (1.16.0-1) ... Setting up libtool (2.5.4-4) ... Setting up discount (2.2.7-2.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/adapterremoval-2.3.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../adapterremoval_2.3.4-1_source.changes dpkg-buildpackage: info: source package adapterremoval dpkg-buildpackage: info: source version 2.3.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no Cleaning tests ... Cleaning documentation ... Cleaning ... make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4/examples' rm -f output_* make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4/examples' make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no Building build/main/adapterset.o from src/adapterset.cpp Building build/main/alignment.o from src/alignment.cpp Building build/main/alignment_tables.o from src/alignment_tables.cpp Building build/main/argparse.o from src/argparse.cpp Building build/main/barcode_table.o from src/barcode_table.cpp Building build/main/debug.o from src/debug.cpp Building build/main/demultiplex.o from src/demultiplex.cpp Building build/main/fastq.o from src/fastq.cpp Building build/main/fastq_enc.o from src/fastq_enc.cpp Building build/main/fastq_io.o from src/fastq_io.cpp Building build/main/linereader.o from src/linereader.cpp Building build/main/linereader_joined.o from src/linereader_joined.cpp Building build/main/main_adapter_id.o from src/main_adapter_id.cpp Building build/main/main_adapter_rm.o from src/main_adapter_rm.cpp Building build/main/main_demultiplex.o from src/main_demultiplex.cpp Building build/main/managed_writer.o from src/managed_writer.cpp Building build/main/scheduler.o from src/scheduler.cpp Building build/main/strutils.o from src/strutils.cpp Building build/main/threads.o from src/threads.cpp Building build/main/timer.o from src/timer.cpp Building build/main/trimmed_reads.o from src/trimmed_reads.cpp Building build/main/userconfig.o from src/userconfig.cpp Building build/main/main.o from src/main.cpp Linking executable build/AdapterRemoval make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' markdown README.md > README.html make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' # dh_auto_test make test make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no Building build/tests/main_test.o from tests/unit/main_test.cpp Building build/tests/debug.o from src/debug.cpp Building build/tests/alignment.o from src/alignment.cpp Building build/tests/alignment_tables.o from src/alignment_tables.cpp Building build/tests/alignment_test.o from tests/unit/alignment_test.cpp Building build/tests/argparse.o from src/argparse.cpp Building build/tests/argparse_test.o from tests/unit/argparse_test.cpp Building build/tests/barcodes_test.o from tests/unit/barcodes_test.cpp Building build/tests/barcode_table.o from src/barcode_table.cpp Building build/tests/fastq.o from src/fastq.cpp Building build/tests/fastq_test.o from tests/unit/fastq_test.cpp Building build/tests/fastq_enc.o from src/fastq_enc.cpp Building build/tests/fastq_enc_test.o from tests/unit/fastq_enc_test.cpp Building build/tests/strutils.o from src/strutils.cpp Building build/tests/strutils_test.o from tests/unit/strutils_test.cpp Linking executable build/tests/main Running unit tests =============================================================================== All tests passed (827 assertions in 268 test cases) make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' make clean_tests make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no Cleaning tests ... removed 'build/tests/fastq.deps' removed 'build/tests/main_test.o' removed 'build/tests/strutils.deps' removed 'build/tests/fastq_test.deps' removed 'build/tests/alignment_tables.deps' removed 'build/tests/fastq_enc_test.deps' removed 'build/tests/barcodes_test.deps' removed 'build/tests/main' removed 'build/tests/barcode_table.deps' removed 'build/tests/fastq.o' removed 'build/tests/barcodes_test.o' removed 'build/tests/alignment_test.o' removed 'build/tests/alignment.deps' removed 'build/tests/argparse_test.o' removed 'build/tests/alignment.o' removed 'build/tests/main_test.deps' removed 'build/tests/debug.deps' removed 'build/tests/debug.o' removed 'build/tests/fastq_enc_test.o' removed 'build/tests/argparse.o' removed 'build/tests/fastq_test.o' removed 'build/tests/argparse_test.deps' removed 'build/tests/strutils.o' removed 'build/tests/strutils_test.deps' removed 'build/tests/fastq_enc.o' removed 'build/tests/strutils_test.o' removed 'build/tests/barcode_table.o' removed 'build/tests/alignment_tables.o' removed 'build/tests/fastq_enc.deps' removed 'build/tests/argparse.deps' removed 'build/tests/alignment_test.deps' removed directory 'build/tests' make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' make PREFIX=/build/reproducible-path/adapterremoval-2.3.4/debian/adapterremoval/usr make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' # Hmmm, this does nothing ... make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_installchangelogs CHANGES.md make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_fixperms find debian -name benchmark.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'adapterremoval-dbgsym' in '../adapterremoval-dbgsym_2.3.4-1_amd64.deb'. dpkg-deb: building package 'adapterremoval' in '../adapterremoval_2.3.4-1_amd64.deb'. dpkg-deb: building package 'adapterremoval-examples' in '../adapterremoval-examples_2.3.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../adapterremoval_2.3.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../adapterremoval_2.3.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2636775 and its subdirectories I: Current time: Wed Sep 2 08:15:37 -12 2026 I: pbuilder-time-stamp: 1788380137 Wed Sep 2 20:15:37 UTC 2026 I: Signing ./b1/adapterremoval_2.3.4-1_amd64.buildinfo as adapterremoval_2.3.4-1_amd64.buildinfo.asc Wed Sep 2 20:15:37 UTC 2026 I: Signed ./b1/adapterremoval_2.3.4-1_amd64.buildinfo as ./b1/adapterremoval_2.3.4-1_amd64.buildinfo.asc Wed Sep 2 20:15:37 UTC 2026 - build #1 for adapterremoval/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Wed Sep 2 20:15:37 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-jRm18GCI, removing. /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm: total 16 -rw-r--r-- 1 jenkins jenkins 2330 Mar 1 12:51 adapterremoval_2.3.4-1.dsc drwxr-xr-x 2 jenkins jenkins 4096 Jul 31 13:52 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jul 31 13:50 b2 -rw------- 1 jenkins jenkins 3481 Jul 31 13:50 rbuildlog.J67pjAG /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b1: total 4048 -rw-r--r-- 1 jenkins jenkins 2761580 Jul 31 13:52 adapterremoval-dbgsym_2.3.4-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 380376 Jul 31 13:52 adapterremoval-examples_2.3.4-1_all.deb -rw-r--r-- 1 jenkins jenkins 5488 Jul 31 13:52 adapterremoval_2.3.4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2330 Jul 31 13:52 adapterremoval_2.3.4-1.dsc -rw-r--r-- 1 jenkins jenkins 5441 Jul 31 13:52 adapterremoval_2.3.4-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6323 Jul 31 13:52 adapterremoval_2.3.4-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2045 Jul 31 13:52 adapterremoval_2.3.4-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 204628 Jul 31 13:52 adapterremoval_2.3.4-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1723 Jul 31 13:52 adapterremoval_2.3.4-1_source.changes -rw-r--r-- 1 jenkins jenkins 725739 Jul 31 13:52 adapterremoval_2.3.4.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 26755 Jul 31 13:52 build.log /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b2: total 0 Thu Jul 31 13:52:38 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 2 08:13:16 -12 2026 I: pbuilder-time-stamp: 1788379996 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [adapterremoval_2.3.4-1.dsc] I: copying [./adapterremoval_2.3.4.orig.tar.gz] I: copying [./adapterremoval_2.3.4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./adapterremoval_2.3.4-1.dsc: no acceptable signature found dpkg-source: info: extracting adapterremoval in adapterremoval-2.3.4 dpkg-source: info: unpacking adapterremoval_2.3.4.orig.tar.gz dpkg-source: info: unpacking adapterremoval_2.3.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy-breaches.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2636775/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f9d5f49c21864ac98a04059fa588dbfb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2636775' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/pbuilderrc_8BfP --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b1 --logfile b1/build.log adapterremoval_2.3.4-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2636775/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, libgtest-dev, discount dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on discount; however: Package discount is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} discount{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbz2-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libmagic-mgc{a} libmagic1t64{a} libmarkdown2{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 13.0 MB of archives. After unpacking 49.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 discount amd64 2.2.7-2.1 [24.6 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 googletest all 1.16.0-1 [517 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 13.0 MB in 0s (29.4 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libmarkdown2:amd64 (2.2.7-2.1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libgtest-dev:amd64 (1.16.0-1) ... Setting up libtool (2.5.4-4) ... Setting up discount (2.2.7-2.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/adapterremoval-2.3.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../adapterremoval_2.3.4-1_source.changes dpkg-buildpackage: info: source package adapterremoval dpkg-buildpackage: info: source version 2.3.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no Cleaning tests ... Cleaning documentation ... Cleaning ... make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4/examples' rm -f output_* make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4/examples' make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no Building build/main/adapterset.o from src/adapterset.cpp Building build/main/alignment.o from src/alignment.cpp Building build/main/alignment_tables.o from src/alignment_tables.cpp Building build/main/argparse.o from src/argparse.cpp Building build/main/barcode_table.o from src/barcode_table.cpp Building build/main/debug.o from src/debug.cpp Building build/main/demultiplex.o from src/demultiplex.cpp Building build/main/fastq.o from src/fastq.cpp Building build/main/fastq_enc.o from src/fastq_enc.cpp Building build/main/fastq_io.o from src/fastq_io.cpp Building build/main/linereader.o from src/linereader.cpp Building build/main/linereader_joined.o from src/linereader_joined.cpp Building build/main/main_adapter_id.o from src/main_adapter_id.cpp Building build/main/main_adapter_rm.o from src/main_adapter_rm.cpp Building build/main/main_demultiplex.o from src/main_demultiplex.cpp Building build/main/managed_writer.o from src/managed_writer.cpp Building build/main/scheduler.o from src/scheduler.cpp Building build/main/strutils.o from src/strutils.cpp Building build/main/threads.o from src/threads.cpp Building build/main/timer.o from src/timer.cpp Building build/main/trimmed_reads.o from src/trimmed_reads.cpp Building build/main/userconfig.o from src/userconfig.cpp Building build/main/main.o from src/main.cpp Linking executable build/AdapterRemoval make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' markdown README.md > README.html make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' # dh_auto_test make test make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no Building build/tests/main_test.o from tests/unit/main_test.cpp Building build/tests/debug.o from src/debug.cpp Building build/tests/alignment.o from src/alignment.cpp Building build/tests/alignment_tables.o from src/alignment_tables.cpp Building build/tests/alignment_test.o from tests/unit/alignment_test.cpp Building build/tests/argparse.o from src/argparse.cpp Building build/tests/argparse_test.o from tests/unit/argparse_test.cpp Building build/tests/barcodes_test.o from tests/unit/barcodes_test.cpp Building build/tests/barcode_table.o from src/barcode_table.cpp Building build/tests/fastq.o from src/fastq.cpp Building build/tests/fastq_test.o from tests/unit/fastq_test.cpp Building build/tests/fastq_enc.o from src/fastq_enc.cpp Building build/tests/fastq_enc_test.o from tests/unit/fastq_enc_test.cpp Building build/tests/strutils.o from src/strutils.cpp Building build/tests/strutils_test.o from tests/unit/strutils_test.cpp Linking executable build/tests/main Running unit tests =============================================================================== All tests passed (827 assertions in 268 test cases) make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' make clean_tests make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no Cleaning tests ... removed 'build/tests/fastq.deps' removed 'build/tests/main_test.o' removed 'build/tests/strutils.deps' removed 'build/tests/fastq_test.deps' removed 'build/tests/alignment_tables.deps' removed 'build/tests/fastq_enc_test.deps' removed 'build/tests/barcodes_test.deps' removed 'build/tests/main' removed 'build/tests/barcode_table.deps' removed 'build/tests/fastq.o' removed 'build/tests/barcodes_test.o' removed 'build/tests/alignment_test.o' removed 'build/tests/alignment.deps' removed 'build/tests/argparse_test.o' removed 'build/tests/alignment.o' removed 'build/tests/main_test.deps' removed 'build/tests/debug.deps' removed 'build/tests/debug.o' removed 'build/tests/fastq_enc_test.o' removed 'build/tests/argparse.o' removed 'build/tests/fastq_test.o' removed 'build/tests/argparse_test.deps' removed 'build/tests/strutils.o' removed 'build/tests/strutils_test.deps' removed 'build/tests/fastq_enc.o' removed 'build/tests/strutils_test.o' removed 'build/tests/barcode_table.o' removed 'build/tests/alignment_tables.o' removed 'build/tests/fastq_enc.deps' removed 'build/tests/argparse.deps' removed 'build/tests/alignment_test.deps' removed directory 'build/tests' make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' make PREFIX=/build/reproducible-path/adapterremoval-2.3.4/debian/adapterremoval/usr make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' # Hmmm, this does nothing ... make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_installchangelogs CHANGES.md make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_fixperms find debian -name benchmark.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'adapterremoval-dbgsym' in '../adapterremoval-dbgsym_2.3.4-1_amd64.deb'. dpkg-deb: building package 'adapterremoval' in '../adapterremoval_2.3.4-1_amd64.deb'. dpkg-deb: building package 'adapterremoval-examples' in '../adapterremoval-examples_2.3.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../adapterremoval_2.3.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../adapterremoval_2.3.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2636775 and its subdirectories I: Current time: Wed Sep 2 08:15:37 -12 2026 I: pbuilder-time-stamp: 1788380137 Thu Jul 31 13:52:39 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Jul 31 13:52:39 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Jul 31 13:52:39 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Jul 31 13:52:39 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-1OnmWS' ==================================================================================== Thu Jul 31 13:52:40 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 adapterremoval unstable /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm 2.3.4-1" as arguments. Thu Jul 31 13:52:40 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-XzC9Brlw" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jul 31 13:52:40 UTC 2025 I: Downloading source for unstable/adapterremoval=2.3.4-1 Reading package lists... NOTICE: 'adapterremoval' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/adapterremoval.git Please use: git clone https://salsa.debian.org/med-team/adapterremoval.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 734 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (dsc) [2330 B] Get:2 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (tar) [726 kB] Get:3 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (diff) [5488 B] Fetched 734 kB in 0s (17.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'adapterremoval' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/adapterremoval.git Please use: git clone https://salsa.debian.org/med-team/adapterremoval.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 734 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (dsc) [2330 B] Get:2 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (tar) [726 kB] Get:3 http://deb.debian.org/debian unstable/main adapterremoval 2.3.4-1 (diff) [5488 B] Fetched 734 kB in 0s (17.2 MB/s) Download complete and in download only mode ============================================================================= Re-Building adapterremoval in unstable on amd64 on ionos11-amd64 now. Date: Thu Jul 31 13:52:40 UTC 2025 Date UTC: Thu Jul 31 13:52:40 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/pbuilderrc_6jTE + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' adapterremoval = debian-installer -o adapterremoval = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' adapterremoval = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/pbuilderrc_6jTE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b2 --logfile b2/build.log adapterremoval_2.3.4-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 1 03:52:40 +14 2025 I: pbuilder-time-stamp: 1753969960 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [adapterremoval_2.3.4-1.dsc] I: copying [./adapterremoval_2.3.4.orig.tar.gz] I: copying [./adapterremoval_2.3.4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./adapterremoval_2.3.4-1.dsc: no acceptable signature found dpkg-source: info: extracting adapterremoval in adapterremoval-2.3.4 dpkg-source: info: unpacking adapterremoval_2.3.4.orig.tar.gz dpkg-source: info: unpacking adapterremoval_2.3.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy-breaches.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jul 31 13:52 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=0d172d06ee08493380483038fead6239 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4076708 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/pbuilderrc_6jTE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b2 --logfile b2/build.log adapterremoval_2.3.4-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, libgtest-dev, discount dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on discount; however: Package discount is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} discount{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbz2-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libmagic-mgc{a} libmagic1t64{a} libmarkdown2{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 13.0 MB of archives. After unpacking 49.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 discount amd64 2.2.7-2.1 [24.6 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 googletest all 1.16.0-1 [517 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 13.0 MB in 3s (3910 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libmarkdown2:amd64. Preparing to unpack .../29-libmarkdown2_2.2.7-2.1_amd64.deb ... Unpacking libmarkdown2:amd64 (2.2.7-2.1) ... Selecting previously unselected package discount. Preparing to unpack .../30-discount_2.2.7-2.1_amd64.deb ... Unpacking discount (2.2.7-2.1) ... Selecting previously unselected package googletest. Preparing to unpack .../31-googletest_1.16.0-1_all.deb ... Unpacking googletest (1.16.0-1) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../32-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libgtest-dev:amd64. Preparing to unpack .../33-libgtest-dev_1.16.0-1_amd64.deb ... Unpacking libgtest-dev:amd64 (1.16.0-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up googletest (1.16.0-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libmarkdown2:amd64 (2.2.7-2.1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libgtest-dev:amd64 (1.16.0-1) ... Setting up libtool (2.5.4-4) ... Setting up discount (2.2.7-2.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/adapterremoval-2.3.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../adapterremoval_2.3.4-1_source.changes dpkg-buildpackage: info: source package adapterremoval dpkg-buildpackage: info: source version 2.3.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j40 clean make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no \033[0;32mCleaning tests ...\033[0m \033[0;32mCleaning documentation ...\033[0m \033[0;32mCleaning ...\033[0m make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4/examples' rm -f output_* make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4/examples' make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_auto_build make -j40 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no \033[0;36mBuilding build/main/adapterset.o from src/adapterset.cpp\033[0m \033[0;36mBuilding build/main/alignment.o from src/alignment.cpp\033[0m \033[0;36mBuilding build/main/alignment_tables.o from src/alignment_tables.cpp\033[0m \033[0;36mBuilding build/main/argparse.o from src/argparse.cpp\033[0m \033[0;36mBuilding build/main/barcode_table.o from src/barcode_table.cpp\033[0m \033[0;36mBuilding build/main/debug.o from src/debug.cpp\033[0m \033[0;36mBuilding build/main/demultiplex.o from src/demultiplex.cpp\033[0m \033[0;36mBuilding build/main/fastq.o from src/fastq.cpp\033[0m \033[0;36mBuilding build/main/fastq_enc.o from src/fastq_enc.cpp\033[0m \033[0;36mBuilding build/main/fastq_io.o from src/fastq_io.cpp\033[0m \033[0;36mBuilding build/main/linereader.o from src/linereader.cpp\033[0m \033[0;36mBuilding build/main/linereader_joined.o from src/linereader_joined.cpp\033[0m \033[0;36mBuilding build/main/main_adapter_id.o from src/main_adapter_id.cpp\033[0m \033[0;36mBuilding build/main/main_adapter_rm.o from src/main_adapter_rm.cpp\033[0m \033[0;36mBuilding build/main/main_demultiplex.o from src/main_demultiplex.cpp\033[0m \033[0;36mBuilding build/main/managed_writer.o from src/managed_writer.cpp\033[0m \033[0;36mBuilding build/main/scheduler.o from src/scheduler.cpp\033[0m \033[0;36mBuilding build/main/strutils.o from src/strutils.cpp\033[0m \033[0;36mBuilding build/main/threads.o from src/threads.cpp\033[0m \033[0;36mBuilding build/main/timer.o from src/timer.cpp\033[0m \033[0;36mBuilding build/main/trimmed_reads.o from src/trimmed_reads.cpp\033[0m \033[0;36mBuilding build/main/userconfig.o from src/userconfig.cpp\033[0m \033[0;36mBuilding build/main/main.o from src/main.cpp\033[0m \033[0;32mLinking executable build/AdapterRemoval\033[0m make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' markdown README.md > README.html make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' # dh_auto_test make test make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no \033[0;36mBuilding build/tests/main_test.o from tests/unit/main_test.cpp\033[0m \033[0;36mBuilding build/tests/debug.o from src/debug.cpp\033[0m \033[0;36mBuilding build/tests/alignment.o from src/alignment.cpp\033[0m \033[0;36mBuilding build/tests/alignment_tables.o from src/alignment_tables.cpp\033[0m \033[0;36mBuilding build/tests/alignment_test.o from tests/unit/alignment_test.cpp\033[0m \033[0;36mBuilding build/tests/argparse.o from src/argparse.cpp\033[0m \033[0;36mBuilding build/tests/argparse_test.o from tests/unit/argparse_test.cpp\033[0m \033[0;36mBuilding build/tests/barcodes_test.o from tests/unit/barcodes_test.cpp\033[0m \033[0;36mBuilding build/tests/barcode_table.o from src/barcode_table.cpp\033[0m \033[0;36mBuilding build/tests/fastq.o from src/fastq.cpp\033[0m \033[0;36mBuilding build/tests/fastq_test.o from tests/unit/fastq_test.cpp\033[0m \033[0;36mBuilding build/tests/fastq_enc.o from src/fastq_enc.cpp\033[0m \033[0;36mBuilding build/tests/fastq_enc_test.o from tests/unit/fastq_enc_test.cpp\033[0m \033[0;36mBuilding build/tests/strutils.o from src/strutils.cpp\033[0m \033[0;36mBuilding build/tests/strutils_test.o from tests/unit/strutils_test.cpp\033[0m \033[0;32mLinking executable build/tests/main\033[0m \033[0;32mRunning unit tests\033[0m =============================================================================== All tests passed (827 assertions in 268 test cases) make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' make clean_tests make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no \033[0;32mCleaning tests ...\033[0m removed 'build/tests/fastq_enc_test.o' removed 'build/tests/alignment_tables.o' removed 'build/tests/barcodes_test.o' removed 'build/tests/fastq_test.deps' removed 'build/tests/alignment_test.o' removed 'build/tests/strutils.deps' removed 'build/tests/debug.deps' removed 'build/tests/fastq_enc.deps' removed 'build/tests/barcodes_test.deps' removed 'build/tests/alignment.o' removed 'build/tests/alignment.deps' removed 'build/tests/alignment_tables.deps' removed 'build/tests/main_test.o' removed 'build/tests/barcode_table.deps' removed 'build/tests/barcode_table.o' removed 'build/tests/main_test.deps' removed 'build/tests/argparse_test.deps' removed 'build/tests/fastq_test.o' removed 'build/tests/strutils_test.o' removed 'build/tests/strutils_test.deps' removed 'build/tests/argparse_test.o' removed 'build/tests/alignment_test.deps' removed 'build/tests/main' removed 'build/tests/argparse.o' removed 'build/tests/fastq.o' removed 'build/tests/argparse.deps' removed 'build/tests/debug.o' removed 'build/tests/fastq_enc_test.deps' removed 'build/tests/fastq_enc.o' removed 'build/tests/fastq.deps' removed 'build/tests/strutils.o' removed directory 'build/tests' make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' make PREFIX=/build/reproducible-path/adapterremoval-2.3.4/debian/adapterremoval/usr make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' # Hmmm, this does nothing ... make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_installchangelogs CHANGES.md make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_fixperms find debian -name benchmark.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'adapterremoval' in '../adapterremoval_2.3.4-1_amd64.deb'. dpkg-deb: building package 'adapterremoval-dbgsym' in '../adapterremoval-dbgsym_2.3.4-1_amd64.deb'. dpkg-deb: building package 'adapterremoval-examples' in '../adapterremoval-examples_2.3.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../adapterremoval_2.3.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../adapterremoval_2.3.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4076708 and its subdirectories I: Current time: Fri Aug 1 03:55:53 +14 2025 I: pbuilder-time-stamp: 1753970153 + false + set +x Thu Jul 31 13:55:53 UTC 2025 I: Signing ./b2/adapterremoval_2.3.4-1_amd64.buildinfo as adapterremoval_2.3.4-1_amd64.buildinfo.asc Thu Jul 31 13:55:53 UTC 2025 I: Signed ./b2/adapterremoval_2.3.4-1_amd64.buildinfo as ./b2/adapterremoval_2.3.4-1_amd64.buildinfo.asc Thu Jul 31 13:55:53 UTC 2025 - build #2 for adapterremoval/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Thu Jul 31 13:55:53 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-XzC9Brlw, removing. /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm: total 44 -rw-r--r-- 1 jenkins jenkins 2330 Mar 1 12:51 adapterremoval_2.3.4-1.dsc drwxr-xr-x 2 jenkins jenkins 4096 Jul 31 13:52 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jul 31 13:55 b2 -rw------- 1 jenkins jenkins 30525 Jul 31 13:52 rbuildlog.J67pjAG /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b1: total 4064 -rw-r--r-- 1 jenkins jenkins 2761580 Jul 31 13:52 adapterremoval-dbgsym_2.3.4-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 380376 Jul 31 13:52 adapterremoval-examples_2.3.4-1_all.deb -rw-r--r-- 1 jenkins jenkins 5488 Jul 31 13:52 adapterremoval_2.3.4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2330 Jul 31 13:52 adapterremoval_2.3.4-1.dsc -rw-r--r-- 1 jenkins jenkins 5441 Jul 31 13:52 adapterremoval_2.3.4-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6323 Jul 31 13:52 adapterremoval_2.3.4-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2045 Jul 31 13:52 adapterremoval_2.3.4-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 204628 Jul 31 13:52 adapterremoval_2.3.4-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1723 Jul 31 13:52 adapterremoval_2.3.4-1_source.changes -rw-r--r-- 1 jenkins jenkins 725739 Jul 31 13:52 adapterremoval_2.3.4.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 26755 Jul 31 13:52 build.log /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b2: total 4052 -rw-r--r-- 1 jenkins jenkins 2761580 Jul 31 13:55 adapterremoval-dbgsym_2.3.4-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 380376 Jul 31 13:55 adapterremoval-examples_2.3.4-1_all.deb -rw-r--r-- 1 jenkins jenkins 5488 Jul 31 13:55 adapterremoval_2.3.4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2330 Jul 31 13:55 adapterremoval_2.3.4-1.dsc -rw-r--r-- 1 jenkins jenkins 5428 Jul 31 13:55 adapterremoval_2.3.4-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6310 Jul 31 13:55 adapterremoval_2.3.4-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2045 Jul 31 13:55 adapterremoval_2.3.4-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 204628 Jul 31 13:55 adapterremoval_2.3.4-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1723 Jul 31 13:55 adapterremoval_2.3.4-1_source.changes -rw-r--r-- 1 jenkins jenkins 725739 Jul 31 13:55 adapterremoval_2.3.4.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 28942 Jul 31 13:55 build.log Thu Jul 31 13:55:54 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Jul 31 13:55:54 UTC 2025 I: adapterremoval_2.3.4-1_amd64.changes: Format: 1.8 Date: Sat, 01 Mar 2025 13:19:26 +0100 Source: adapterremoval Binary: adapterremoval adapterremoval-dbgsym adapterremoval-examples Architecture: amd64 all Version: 2.3.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: adapterremoval - rapid adapter trimming, identification, and read merging of gene adapterremoval-examples - rapid adapter trimming, identification, and read merging (example Changes: adapterremoval (2.3.4-1) unstable; urgency=medium . * Team upload. * New upstream version 2.3.4 * d/control: declare compliance to standards version 4.7.2. * d/copyright: adjust Expat covered file name. * privacy-breaches.patch: new: prevent privacy breaches. Checksums-Sha1: b1765cdbe78680420344ac198fe034e856eb1f86 2761580 adapterremoval-dbgsym_2.3.4-1_amd64.deb 0fdd9c6c80ee7a916b7bc9174dd6c1a973e0971d 380376 adapterremoval-examples_2.3.4-1_all.deb 56e919c0b98e65356ac426ad03ea27717a43750c 5441 adapterremoval_2.3.4-1_amd64.buildinfo 737745ab893ac447881383d7baf4ad4364b7a163 204628 adapterremoval_2.3.4-1_amd64.deb Checksums-Sha256: 07f9c88953c6194f6c763f64f7e730963deec0fe06cc80de9749e9eae05645d4 2761580 adapterremoval-dbgsym_2.3.4-1_amd64.deb 53b817fba4239b54cec64ec3b2f7283be1c160dba8ac02e289331b4a6be96395 380376 adapterremoval-examples_2.3.4-1_all.deb 4c562ae042b3efd3603648b55841abf08b02e4bb3d3105d3449de2fd0df0494d 5441 adapterremoval_2.3.4-1_amd64.buildinfo 37803b303a674922c799739c38745b9f7aee328b709ce061d3311a66e5def6cf 204628 adapterremoval_2.3.4-1_amd64.deb Files: 46e3eea5b676b513f4df8a2331d2afbe 2761580 debug optional adapterremoval-dbgsym_2.3.4-1_amd64.deb 5968f2244b0e4fef79eee5df552d3c42 380376 science optional adapterremoval-examples_2.3.4-1_all.deb 06f9728cafa948f9a825d8b8e841152f 5441 science optional adapterremoval_2.3.4-1_amd64.buildinfo c159d2eb0bda3652a5263f205587bce1 204628 science optional adapterremoval_2.3.4-1_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/adapterremoval_2.3.4-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/adapterremoval_2.3.4-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/adapterremoval_2.3.4-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/adapterremoval_2.3.4-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/adapterremoval_2.3.4-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/adapterremoval_2.3.4-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-07-31 13:52:38.902983584 +0000 +++ b2/build.log 2025-07-31 13:55:54.475219826 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 2 08:13:16 -12 2026 -I: pbuilder-time-stamp: 1788379996 +I: Current time: Fri Aug 1 03:52:40 +14 2025 +I: pbuilder-time-stamp: 1753969960 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying privacy-breaches.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2636775/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 31 13:52 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f9d5f49c21864ac98a04059fa588dbfb' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2636775' - PS1='# ' - PS2='> ' + INVOCATION_ID=0d172d06ee08493380483038fead6239 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4076708 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/pbuilderrc_8BfP --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b1 --logfile b1/build.log adapterremoval_2.3.4-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/pbuilderrc_6jTE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b2 --logfile b2/build.log adapterremoval_2.3.4-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2636775/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -148,7 +180,7 @@ Get: 33 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 13.0 MB in 0s (29.4 MB/s) +Fetched 13.0 MB in 3s (3910 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) @@ -303,7 +335,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/adapterremoval-2.3.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../adapterremoval_2.3.4-1_source.changes +I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/adapterremoval-2.3.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../adapterremoval_2.3.4-1_source.changes dpkg-buildpackage: info: source package adapterremoval dpkg-buildpackage: info: source version 2.3.4-1 dpkg-buildpackage: info: source distribution unstable @@ -313,13 +349,13 @@ debian/rules clean dh clean dh_auto_clean - make -j42 clean + make -j40 clean make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no -Cleaning tests ... -Cleaning documentation ... -Cleaning ... +\033[0;32mCleaning tests ...\033[0m +\033[0;32mCleaning documentation ...\033[0m +\033[0;32mCleaning ...\033[0m make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4/examples' rm -f output_* make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4/examples' @@ -333,34 +369,34 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' dh_auto_build - make -j42 "INSTALL=install --strip-program=true" + make -j40 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no -Building build/main/adapterset.o from src/adapterset.cpp -Building build/main/alignment.o from src/alignment.cpp -Building build/main/alignment_tables.o from src/alignment_tables.cpp -Building build/main/argparse.o from src/argparse.cpp -Building build/main/barcode_table.o from src/barcode_table.cpp -Building build/main/debug.o from src/debug.cpp -Building build/main/demultiplex.o from src/demultiplex.cpp -Building build/main/fastq.o from src/fastq.cpp -Building build/main/fastq_enc.o from src/fastq_enc.cpp -Building build/main/fastq_io.o from src/fastq_io.cpp -Building build/main/linereader.o from src/linereader.cpp -Building build/main/linereader_joined.o from src/linereader_joined.cpp -Building build/main/main_adapter_id.o from src/main_adapter_id.cpp -Building build/main/main_adapter_rm.o from src/main_adapter_rm.cpp -Building build/main/main_demultiplex.o from src/main_demultiplex.cpp -Building build/main/managed_writer.o from src/managed_writer.cpp -Building build/main/scheduler.o from src/scheduler.cpp -Building build/main/strutils.o from src/strutils.cpp -Building build/main/threads.o from src/threads.cpp -Building build/main/timer.o from src/timer.cpp -Building build/main/trimmed_reads.o from src/trimmed_reads.cpp -Building build/main/userconfig.o from src/userconfig.cpp -Building build/main/main.o from src/main.cpp -Linking executable build/AdapterRemoval +\033[0;36mBuilding build/main/adapterset.o from src/adapterset.cpp\033[0m +\033[0;36mBuilding build/main/alignment.o from src/alignment.cpp\033[0m +\033[0;36mBuilding build/main/alignment_tables.o from src/alignment_tables.cpp\033[0m +\033[0;36mBuilding build/main/argparse.o from src/argparse.cpp\033[0m +\033[0;36mBuilding build/main/barcode_table.o from src/barcode_table.cpp\033[0m +\033[0;36mBuilding build/main/debug.o from src/debug.cpp\033[0m +\033[0;36mBuilding build/main/demultiplex.o from src/demultiplex.cpp\033[0m +\033[0;36mBuilding build/main/fastq.o from src/fastq.cpp\033[0m +\033[0;36mBuilding build/main/fastq_enc.o from src/fastq_enc.cpp\033[0m +\033[0;36mBuilding build/main/fastq_io.o from src/fastq_io.cpp\033[0m +\033[0;36mBuilding build/main/linereader.o from src/linereader.cpp\033[0m +\033[0;36mBuilding build/main/linereader_joined.o from src/linereader_joined.cpp\033[0m +\033[0;36mBuilding build/main/main_adapter_id.o from src/main_adapter_id.cpp\033[0m +\033[0;36mBuilding build/main/main_adapter_rm.o from src/main_adapter_rm.cpp\033[0m +\033[0;36mBuilding build/main/main_demultiplex.o from src/main_demultiplex.cpp\033[0m +\033[0;36mBuilding build/main/managed_writer.o from src/managed_writer.cpp\033[0m +\033[0;36mBuilding build/main/scheduler.o from src/scheduler.cpp\033[0m +\033[0;36mBuilding build/main/strutils.o from src/strutils.cpp\033[0m +\033[0;36mBuilding build/main/threads.o from src/threads.cpp\033[0m +\033[0;36mBuilding build/main/timer.o from src/timer.cpp\033[0m +\033[0;36mBuilding build/main/trimmed_reads.o from src/trimmed_reads.cpp\033[0m +\033[0;36mBuilding build/main/userconfig.o from src/userconfig.cpp\033[0m +\033[0;36mBuilding build/main/main.o from src/main.cpp\033[0m +\033[0;32mLinking executable build/AdapterRemoval\033[0m make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' markdown README.md > README.html make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' @@ -371,23 +407,23 @@ make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no -Building build/tests/main_test.o from tests/unit/main_test.cpp -Building build/tests/debug.o from src/debug.cpp -Building build/tests/alignment.o from src/alignment.cpp -Building build/tests/alignment_tables.o from src/alignment_tables.cpp -Building build/tests/alignment_test.o from tests/unit/alignment_test.cpp -Building build/tests/argparse.o from src/argparse.cpp -Building build/tests/argparse_test.o from tests/unit/argparse_test.cpp -Building build/tests/barcodes_test.o from tests/unit/barcodes_test.cpp -Building build/tests/barcode_table.o from src/barcode_table.cpp -Building build/tests/fastq.o from src/fastq.cpp -Building build/tests/fastq_test.o from tests/unit/fastq_test.cpp -Building build/tests/fastq_enc.o from src/fastq_enc.cpp -Building build/tests/fastq_enc_test.o from tests/unit/fastq_enc_test.cpp -Building build/tests/strutils.o from src/strutils.cpp -Building build/tests/strutils_test.o from tests/unit/strutils_test.cpp -Linking executable build/tests/main -Running unit tests +\033[0;36mBuilding build/tests/main_test.o from tests/unit/main_test.cpp\033[0m +\033[0;36mBuilding build/tests/debug.o from src/debug.cpp\033[0m +\033[0;36mBuilding build/tests/alignment.o from src/alignment.cpp\033[0m +\033[0;36mBuilding build/tests/alignment_tables.o from src/alignment_tables.cpp\033[0m +\033[0;36mBuilding build/tests/alignment_test.o from tests/unit/alignment_test.cpp\033[0m +\033[0;36mBuilding build/tests/argparse.o from src/argparse.cpp\033[0m +\033[0;36mBuilding build/tests/argparse_test.o from tests/unit/argparse_test.cpp\033[0m +\033[0;36mBuilding build/tests/barcodes_test.o from tests/unit/barcodes_test.cpp\033[0m +\033[0;36mBuilding build/tests/barcode_table.o from src/barcode_table.cpp\033[0m +\033[0;36mBuilding build/tests/fastq.o from src/fastq.cpp\033[0m +\033[0;36mBuilding build/tests/fastq_test.o from tests/unit/fastq_test.cpp\033[0m +\033[0;36mBuilding build/tests/fastq_enc.o from src/fastq_enc.cpp\033[0m +\033[0;36mBuilding build/tests/fastq_enc_test.o from tests/unit/fastq_enc_test.cpp\033[0m +\033[0;36mBuilding build/tests/strutils.o from src/strutils.cpp\033[0m +\033[0;36mBuilding build/tests/strutils_test.o from tests/unit/strutils_test.cpp\033[0m +\033[0;32mLinking executable build/tests/main\033[0m +\033[0;32mRunning unit tests\033[0m =============================================================================== All tests passed (827 assertions in 268 test cases) @@ -396,38 +432,38 @@ make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.4' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no -Cleaning tests ... -removed 'build/tests/fastq.deps' -removed 'build/tests/main_test.o' -removed 'build/tests/strutils.deps' -removed 'build/tests/fastq_test.deps' -removed 'build/tests/alignment_tables.deps' -removed 'build/tests/fastq_enc_test.deps' -removed 'build/tests/barcodes_test.deps' -removed 'build/tests/main' -removed 'build/tests/barcode_table.deps' -removed 'build/tests/fastq.o' +\033[0;32mCleaning tests ...\033[0m +removed 'build/tests/fastq_enc_test.o' +removed 'build/tests/alignment_tables.o' removed 'build/tests/barcodes_test.o' +removed 'build/tests/fastq_test.deps' removed 'build/tests/alignment_test.o' -removed 'build/tests/alignment.deps' -removed 'build/tests/argparse_test.o' +removed 'build/tests/strutils.deps' +removed 'build/tests/debug.deps' +removed 'build/tests/fastq_enc.deps' +removed 'build/tests/barcodes_test.deps' removed 'build/tests/alignment.o' +removed 'build/tests/alignment.deps' +removed 'build/tests/alignment_tables.deps' +removed 'build/tests/main_test.o' +removed 'build/tests/barcode_table.deps' +removed 'build/tests/barcode_table.o' removed 'build/tests/main_test.deps' -removed 'build/tests/debug.deps' -removed 'build/tests/debug.o' -removed 'build/tests/fastq_enc_test.o' -removed 'build/tests/argparse.o' -removed 'build/tests/fastq_test.o' removed 'build/tests/argparse_test.deps' -removed 'build/tests/strutils.o' -removed 'build/tests/strutils_test.deps' -removed 'build/tests/fastq_enc.o' +removed 'build/tests/fastq_test.o' removed 'build/tests/strutils_test.o' -removed 'build/tests/barcode_table.o' -removed 'build/tests/alignment_tables.o' -removed 'build/tests/fastq_enc.deps' -removed 'build/tests/argparse.deps' +removed 'build/tests/strutils_test.deps' +removed 'build/tests/argparse_test.o' removed 'build/tests/alignment_test.deps' +removed 'build/tests/main' +removed 'build/tests/argparse.o' +removed 'build/tests/fastq.o' +removed 'build/tests/argparse.deps' +removed 'build/tests/debug.o' +removed 'build/tests/fastq_enc_test.deps' +removed 'build/tests/fastq_enc.o' +removed 'build/tests/fastq.deps' +removed 'build/tests/strutils.o' removed directory 'build/tests' make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.4' @@ -468,8 +504,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'adapterremoval-dbgsym' in '../adapterremoval-dbgsym_2.3.4-1_amd64.deb'. dpkg-deb: building package 'adapterremoval' in '../adapterremoval_2.3.4-1_amd64.deb'. +dpkg-deb: building package 'adapterremoval-dbgsym' in '../adapterremoval-dbgsym_2.3.4-1_amd64.deb'. dpkg-deb: building package 'adapterremoval-examples' in '../adapterremoval-examples_2.3.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../adapterremoval_2.3.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../adapterremoval_2.3.4-1_amd64.changes @@ -478,12 +514,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4076708/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2636775 and its subdirectories -I: Current time: Wed Sep 2 08:15:37 -12 2026 -I: pbuilder-time-stamp: 1788380137 +I: removing directory /srv/workspace/pbuilder/4076708 and its subdirectories +I: Current time: Fri Aug 1 03:55:53 +14 2025 +I: pbuilder-time-stamp: 1753970153 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/adapterremoval_2.3.4-1.diff: 77.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/adapterremoval_2.3.4-1.diff.gz b2/build.log: 77.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 78.5% -- replaced with stdout Thu Jul 31 13:55:55 UTC 2025 I: diffoscope 302 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_adapterremoval_unstable_amd64_1753970155 + touch /var/log/reproducible-builds/diffoscope_stamp_adapterremoval_unstable_amd64_1753970155 + RESULT=0 + systemd-run '--description=diffoscope on adapterremoval/2.3.4-1 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_24-67835 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm --run-session -c jenkins-reproducible-unstable-diffoscope-10981c88-35dd-439d-8a19-c204ec716f32 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/dbd-tmp-iwHyZE5 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/adapterremoval_2.3.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/adapterremoval_2.3.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/adapterremoval_2.3.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b1/adapterremoval_2.3.4-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b2/adapterremoval_2.3.4-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_24-67835.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/adapterremoval_2.3.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/adapterremoval_2.3.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/adapterremoval_2.3.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b1/adapterremoval_2.3.4-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.a0sLxoSm/b2/adapterremoval_2.3.4-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 165ms CPU time consumed: 166ms _ _ _ __ _ __| | __ _ _ __ | |_ ___ _ __ _ __ ___ _ __ ___ _____ ____ _| | / _` |/ _` |/ _` | '_ \| __/ _ \ '__| '__/ _ \ '_ ` _ \ / _ \ \ / / _` | | | (_| | (_| | (_| | |_) | || __/ | | | | __/ | | | | | (_) \ V / (_| | | \__,_|\__,_|\__,_| .__/ \__\___|_| |_| \___|_| |_| |_|\___/ \_/ \__,_|_| |_| Thu Jul 31 13:55:57 UTC 2025 I: diffoscope 302 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 31 13:55:57 UTC 2025 I: adapterremoval from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-07-31 13:55:57] INFO: Starting at 2025-07-31 13:55:57.866386 [2025-07-31 13:55:57] INFO: Generating the pages of 1 package(s) [2025-07-31 13:55:58] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/adapterremoval didn't produce a buildlog, even though it has been built. [2025-07-31 13:55:58] INFO: Finished at 2025-07-31 13:55:58.104105, took: 0:00:00.237721 Thu Jul 31 13:55:58 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/adapterremoval.html Thu Jul 31 13:55:58 UTC 2025 I: Removing signed adapterremoval_2.3.4-1_amd64.buildinfo.asc files: removed './b1/adapterremoval_2.3.4-1_amd64.buildinfo.asc' removed './b2/adapterremoval_2.3.4-1_amd64.buildinfo.asc' 1753970158 amd64 unstable adapterremoval Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/adapterremoval_2.3.4-1.rbuild.log: 74.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/adapterremoval_2.3.4-1.rbuild.log.gz [2025-07-31 13:55:58] INFO: Starting at 2025-07-31 13:55:58.356218 [2025-07-31 13:55:58] INFO: Generating the pages of 1 package(s) [2025-07-31 13:55:58] INFO: Finished at 2025-07-31 13:55:58.580345, took: 0:00:00.224131 All cleanup done. Thu Jul 31 13:55:58 UTC 2025 - total duration: 0h 5m 53s. Thu Jul 31 13:55:58 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-bd9QDeSN, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 5min 53.936s CPU time consumed: 4.473s