Running as unit: rb-build-amd64_25-57686.service; invocation ID: 46a2cffe7b994761b4b707d468ed3104 ==================================================================================== Fri Oct 31 20:55:25 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_25) on jenkins, called using "ionos1-amd64 ionos5-amd64" as arguments. Fri Oct 31 20:55:25 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-5R9zrpWb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 20:55:25 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Oct 31 20:55:25 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-o7CcVU' Fri Oct 31 20:55:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Oct 31 20:55:26 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-B4G1RQ' ok, let's check if physamp is building anywhere yet… ok, physamp is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of physamp in unstable on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Fri Oct 31 20:55:41 UTC 2025 I: starting to build physamp/unstable/amd64 on jenkins on '2025-10-31 20:55' Fri Oct 31 20:55:41 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_25/57686/console.log 1761944141 amd64 unstable physamp Fri Oct 31 20:55:41 UTC 2025 I: Downloading source for unstable/physamp=1.1.0-6 --2025-10-31 20:55:41-- http://deb.debian.org/debian/pool/main/p/physamp/physamp_1.1.0-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2143 (2.1K) [text/prs.lines.tag] Saving to: ‘physamp_1.1.0-6.dsc’ 0K .. 100% 259M=0s 2025-10-31 20:55:41 (259 MB/s) - ‘physamp_1.1.0-6.dsc’ saved [2143/2143] --2025-10-31 20:55:41-- http://deb.debian.org/debian/pool/main/p/physamp/physamp_1.1.0-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2143 (2.1K) [text/prs.lines.tag] Saving to: ‘physamp_1.1.0-6.dsc’ 0K .. 100% 259M=0s 2025-10-31 20:55:41 (259 MB/s) - ‘physamp_1.1.0-6.dsc’ saved [2143/2143] Fri Oct 31 20:55:41 UTC 2025 I: physamp_1.1.0-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: physamp Binary: physamp Architecture: any Version: 1.1.0-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Julien Dutheil Homepage: https://jydu.github.io/physamp/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/physamp Vcs-Git: https://salsa.debian.org/med-team/physamp.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev Package-List: physamp deb science optional arch=any Checksums-Sha1: 3ff8524b2bcf0be31ff60857253cdabce2677b90 241845 physamp_1.1.0.orig.tar.gz 180b2f5ac1fcecf257912286bd6c6e3f1e435f9f 4180 physamp_1.1.0-6.debian.tar.xz Checksums-Sha256: 0c687e7f46d6d5732a3ad6f029a0169667921101294a9fb5efaae9adfc397ae8 241845 physamp_1.1.0.orig.tar.gz dfbed3dc7ff30be039b89596b494bd37e4ced1c8f2808bb0516e9e10804ba9fb 4180 physamp_1.1.0-6.debian.tar.xz Files: 70c3d25a3ab2c937495c502a4dbddcdd 241845 physamp_1.1.0.orig.tar.gz bddfff2ea599cd0becd084cf7c586941 4180 physamp_1.1.0-6.debian.tar.xz Dgit: bf71e3c639f30bc7ac19dd00936c5250b0df13d8 debian archive/debian/1.1.0-6 https://git.dgit.debian.org/physamp -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmjmrX8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr4mA/9EVSkPnZLihh9GXKJIMiE6iL+iG31 Qh3C8ctc5ET/jXk6EvtsLcQ/phWkVlflJl7Q3V7ulxlLPnAapo+W+9cNrVP+ALJY Kssw7jtBNfuarnbgOJI2A8ABbKJQYYRzYjjf0LXdUxUO+KwsnMsWN89Ny9GfbHeW GbVdPgkJsYR2U4HylWyMqU6xmjPJvIrnOzxTuWfsS1Xnxwu+Q5HJZMTWs/mwcgul Q6b/VlD2ADVhqIDcEIr7KVo8ZfGytklFy4dto40dlHVwX18H5UQqxFI8Lux6HNbb CuIDIPQLpzOzpT9DV5jxF6vBMwVjTTEDr14pB6X9wAeDhoWytX0TXPiNAX3XbdSW SnVyJVZEYjF9dU4avsmiNRM7TQDHEmzmiwuyoj7iC8S3g4tzOZ4wNa95tAiq0eeK RrgoACg8hIfA6YSARFc0/B1GjzHSx1dVbftE/aO3L2bgc4OMV1kJWrFHZfqb1yyn qg7w9/dCA0xPLzZpL1eUrHrxio7ft6ZYGXUPxgFjex3l+6iAjANfrVoxf8zqaZUD UDc/j44LihOV4QmL7H/udr0tWLYVysddqCDRhMsU0jZlCfn8gO42efjWeIaz6NH7 w2D+R16BQFZAU/56cCgonc7rLs8K71rLALNQQi/xN4OMvugURCp1qWs1lPEYQLCa txqa4MIOjopejQo= =KZo4 -----END PGP SIGNATURE----- Fri Oct 31 20:55:41 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 20:55:41 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Oct 31 20:55:41 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Oct 31 20:55:41 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Oct 31 20:55:41 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Z8CCpX' ==================================================================================== Fri Oct 31 20:55:42 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 physamp unstable /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL 1.1.0-6" as arguments. Fri Oct 31 20:55:42 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-ecr1aElM" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 20:55:42 UTC 2025 I: Downloading source for unstable/physamp=1.1.0-6 Reading package lists... NOTICE: 'physamp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/physamp.git Please use: git clone https://salsa.debian.org/med-team/physamp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 248 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (dsc) [2143 B] Get:2 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (tar) [242 kB] Get:3 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (diff) [4180 B] Fetched 248 kB in 0s (7634 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'physamp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/physamp.git Please use: git clone https://salsa.debian.org/med-team/physamp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 248 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (dsc) [2143 B] Get:2 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (tar) [242 kB] Get:3 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (diff) [4180 B] Fetched 248 kB in 0s (7634 kB/s) Download complete and in download only mode ============================================================================= Building physamp in unstable on amd64 on ionos1-amd64 now. Date: Fri Oct 31 20:55:42 UTC 2025 Date UTC: Fri Oct 31 20:55:42 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 08:55:43 -12 2025 I: pbuilder-time-stamp: 1761944143 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [physamp_1.1.0-6.dsc] I: copying [./physamp_1.1.0.orig.tar.gz] I: copying [./physamp_1.1.0-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./physamp_1.1.0-6.dsc: no acceptable signature found dpkg-source: info: extracting physamp in physamp-1.1.0 dpkg-source: info: unpacking physamp_1.1.0.orig.tar.gz dpkg-source: info: unpacking physamp_1.1.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying cmake-4.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/987520/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='647ab73b7d08408b87121fce441e9ce9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='987520' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/pbuilderrc_kCIc --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b1 --logfile b1/build.log physamp_1.1.0-6.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/987520/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-dev; however: Package libbpp-phyl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl12t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libintl-perl{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libintl-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 43.5 MB of archives. After unpacking 203 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 16 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 32 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.17.0~rc3-1 [409 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 59 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libbpp-core4t64 amd64 2.4.1-14 [623 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libbpp-core-dev amd64 2.4.1-14 [964 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libbpp-seq12t64 amd64 2.4.1-14 [510 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl12t64 amd64 2.4.1-12 [1713 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-dev amd64 2.4.1-14 [740 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-dev amd64 2.4.1-12 [3029 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libintl-perl all 1.35-1 [690 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-6+b1 [314 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.2-5 [812 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.2-5 [1973 kB] Fetched 43.5 MB in 1s (86.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. 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Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../13-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../14-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../15-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. 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Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../27-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../28-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../29-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../30-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../31-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../32-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../33-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../34-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../35-libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../36-libsasl2-2_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../37-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. 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Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../44-libgnutls30t64_3.8.10-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.10-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../45-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../46-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../47-libcurl4t64_8.17.0~rc3-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.17.0~rc3-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../48-libjsoncpp26_1.9.6-4_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-4) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../49-librhash1_1.4.6-1_amd64.deb ... 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Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../62-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../63-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libbpp-core4t64:amd64. Preparing to unpack .../64-libbpp-core4t64_2.4.1-14_amd64.deb ... Unpacking libbpp-core4t64:amd64 (2.4.1-14) ... Selecting previously unselected package libbpp-core-dev:amd64. Preparing to unpack .../65-libbpp-core-dev_2.4.1-14_amd64.deb ... Unpacking libbpp-core-dev:amd64 (2.4.1-14) ... Selecting previously unselected package libbpp-seq12t64:amd64. Preparing to unpack .../66-libbpp-seq12t64_2.4.1-14_amd64.deb ... Unpacking libbpp-seq12t64:amd64 (2.4.1-14) ... Selecting previously unselected package libbpp-phyl12t64:amd64. Preparing to unpack .../67-libbpp-phyl12t64_2.4.1-12_amd64.deb ... Unpacking libbpp-phyl12t64:amd64 (2.4.1-12) ... Selecting previously unselected package libbpp-seq-dev:amd64. Preparing to unpack .../68-libbpp-seq-dev_2.4.1-14_amd64.deb ... Unpacking libbpp-seq-dev:amd64 (2.4.1-14) ... Selecting previously unselected package libbpp-phyl-dev:amd64. Preparing to unpack .../69-libbpp-phyl-dev_2.4.1-12_amd64.deb ... Unpacking libbpp-phyl-dev:amd64 (2.4.1-12) ... Selecting previously unselected package libintl-perl. Preparing to unpack .../70-libintl-perl_1.35-1_all.deb ... Unpacking libintl-perl (1.35-1) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../71-libtext-unidecode-perl_1.30-3_all.deb ... Unpacking libtext-unidecode-perl (1.30-3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../72-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../73-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../74-libxml-sax-perl_1.02+dfsg-4_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-4) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../75-libxml-libxml-perl_2.0207+dfsg+really+2.0134-6+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-6+b1) ... Selecting previously unselected package tex-common. Preparing to unpack .../76-tex-common_6.19_all.deb ... Unpacking tex-common (6.19) ... Selecting previously unselected package texinfo-lib. Preparing to unpack .../77-texinfo-lib_7.2-5_amd64.deb ... Unpacking texinfo-lib (7.2-5) ... Selecting previously unselected package texinfo. Preparing to unpack .../78-texinfo_7.2-5_all.deb ... Unpacking texinfo (7.2-5) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-0.3) ... Setting up libbpp-core4t64:amd64 (2.4.1-14) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up texinfo-lib (7.2-5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up libbpp-core-dev:amd64 (2.4.1-14) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libintl-perl (1.35-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbpp-seq12t64:amd64 (2.4.1-14) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libbpp-seq-dev:amd64 (2.4.1-14) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libbpp-phyl12t64:amd64 (2.4.1-12) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libbpp-phyl-dev:amd64 (2.4.1-12) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up ucf (3.0052) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcurl4t64:amd64 (8.17.0~rc3-1) ... Setting up debhelper (13.28) ... Setting up texinfo (7.2-5) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/physamp-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../physamp_1.1.0-6_source.changes dpkg-buildpackage: info: source package physamp dpkg-buildpackage: info: source version 1.1.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- Found makeinfo as '/usr/bin/makeinfo': 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppalnoptim.dir/DependInfo.cmake "--color=" make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppphysamp.dir/DependInfo.cmake "--color=" make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/depend make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/docs /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/CMakeFiles/info.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/man /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/build make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 12%] Building CXX object physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -MF CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o.d -o CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp [ 25%] Generating info page cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs && /usr/bin/makeinfo --no-split -o /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info /build/reproducible-path/physamp-1.1.0/docs/physamp.texi [ 37%] Compressing manpage bppphysamp.1 [ 50%] Compressing manpage bppalnoptim.1 [ 62%] Building CXX object physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppphysamp.1 > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppphysamp.1.gz cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -MF CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o.d -o CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppalnoptim.1 > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppalnoptim.1.gz make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 62%] Built target man physamp.texi:233: warning: node up pointer for `bppphysamp' is `Top' but up is `bppalnoptim' in menu [ 75%] Compressing info page cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info.gz make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 75%] Built target info /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp: In function 'int main(int, char**)': /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:197:16: warning: ignoring return value of '_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = Test]', declared with attribute 'nodiscard' [-Wunused-result] 197 | remove_if(distances.begin(), distances.end(), Test(rm)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/Bpp/Numeric/VectorTools.h:54, from /usr/include/Bpp/Numeric/DataTable.h:43, from /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:34: /usr/include/c++/15/bits/stl_algo.h:806:5: note: declared here 806 | remove_if(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~ /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:230:16: warning: ignoring return value of '_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = Test]', declared with attribute 'nodiscard' [-Wunused-result] 230 | remove_if(distances.begin(), distances.end(), Test(rm)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_algo.h:806:5: note: declared here 806 | remove_if(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~ /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp: In function 'int main(int, char**)': /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp:444:13: warning: catching polymorphic type 'class bpp::SequenceNotFoundException' by value [-Wcatch-value=] 444 | } catch(SequenceNotFoundException) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Linking CXX executable bppphysamp cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppphysamp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bppphysamp.dir/link.d CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -o bppphysamp /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 87%] Built target bppphysamp [100%] Linking CXX executable bppalnoptim cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnoptim.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bppalnoptim.dir/link.d CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -o bppalnoptim /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [100%] Built target bppalnoptim make[2]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/physamp/ cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/physamp-1.1.0/debian/physamp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/bin/bppalnoptim -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/bin/bppphysamp -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/info/physamp.info.gz -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppalnoptim.1.gz -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppphysamp.1.gz make[1]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'physamp-dbgsym' in '../physamp-dbgsym_1.1.0-6_amd64.deb'. dpkg-deb: building package 'physamp' in '../physamp_1.1.0-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../physamp_1.1.0-6_amd64.buildinfo dpkg-genchanges --build=binary -O../physamp_1.1.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/987520 and its subdirectories I: Current time: Fri Oct 31 08:57:33 -12 2025 I: pbuilder-time-stamp: 1761944253 Fri Oct 31 20:57:33 UTC 2025 I: Signing ./b1/physamp_1.1.0-6_amd64.buildinfo as physamp_1.1.0-6_amd64.buildinfo.asc Fri Oct 31 20:57:33 UTC 2025 I: Signed ./b1/physamp_1.1.0-6_amd64.buildinfo as ./b1/physamp_1.1.0-6_amd64.buildinfo.asc Fri Oct 31 20:57:33 UTC 2025 - build #1 for physamp/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 20:57:33 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ecr1aElM, removing. /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 20:57 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 20:55 b2 -rw-rw-r-- 1 jenkins jenkins 2143 Oct 8 18:39 physamp_1.1.0-6.dsc -rw------- 1 jenkins jenkins 3243 Oct 31 20:55 rbuildlog.EVHWXEu /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b1: total 1596 -rw-r--r-- 1 jenkins jenkins 49235 Oct 31 20:57 build.log -rw-r--r-- 1 jenkins jenkins 1349024 Oct 31 20:57 physamp-dbgsym_1.1.0-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 4180 Oct 31 20:57 physamp_1.1.0-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2143 Oct 31 20:57 physamp_1.1.0-6.dsc -rw-r--r-- 1 jenkins jenkins 6426 Oct 31 20:57 physamp_1.1.0-6_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7308 Oct 31 20:57 physamp_1.1.0-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1564 Oct 31 20:57 physamp_1.1.0-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 189356 Oct 31 20:57 physamp_1.1.0-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1414 Oct 31 20:57 physamp_1.1.0-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b2: total 0 Fri Oct 31 20:57:34 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 08:55:43 -12 2025 I: pbuilder-time-stamp: 1761944143 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [physamp_1.1.0-6.dsc] I: copying [./physamp_1.1.0.orig.tar.gz] I: copying [./physamp_1.1.0-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./physamp_1.1.0-6.dsc: no acceptable signature found dpkg-source: info: extracting physamp in physamp-1.1.0 dpkg-source: info: unpacking physamp_1.1.0.orig.tar.gz dpkg-source: info: unpacking physamp_1.1.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying cmake-4.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/987520/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='647ab73b7d08408b87121fce441e9ce9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='987520' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/pbuilderrc_kCIc --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b1 --logfile b1/build.log physamp_1.1.0-6.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/987520/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-dev; however: Package libbpp-phyl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl12t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libintl-perl{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libintl-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 43.5 MB of archives. After unpacking 203 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 16 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 32 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.17.0~rc3-1 [409 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 59 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libbpp-core4t64 amd64 2.4.1-14 [623 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libbpp-core-dev amd64 2.4.1-14 [964 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libbpp-seq12t64 amd64 2.4.1-14 [510 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl12t64 amd64 2.4.1-12 [1713 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-dev amd64 2.4.1-14 [740 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-dev amd64 2.4.1-12 [3029 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libintl-perl all 1.35-1 [690 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-6+b1 [314 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.2-5 [812 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.2-5 [1973 kB] Fetched 43.5 MB in 1s (86.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../13-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../14-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../15-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. 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Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcurl4t64:amd64 (8.17.0~rc3-1) ... Setting up debhelper (13.28) ... Setting up texinfo (7.2-5) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/physamp-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../physamp_1.1.0-6_source.changes dpkg-buildpackage: info: source package physamp dpkg-buildpackage: info: source version 1.1.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- Found makeinfo as '/usr/bin/makeinfo': 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppalnoptim.dir/DependInfo.cmake "--color=" make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppphysamp.dir/DependInfo.cmake "--color=" make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/depend make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/docs /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/CMakeFiles/info.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/man /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/build make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 12%] Building CXX object physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -MF CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o.d -o CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp [ 25%] Generating info page cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs && /usr/bin/makeinfo --no-split -o /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info /build/reproducible-path/physamp-1.1.0/docs/physamp.texi [ 37%] Compressing manpage bppphysamp.1 [ 50%] Compressing manpage bppalnoptim.1 [ 62%] Building CXX object physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppphysamp.1 > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppphysamp.1.gz cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -MF CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o.d -o CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppalnoptim.1 > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppalnoptim.1.gz make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 62%] Built target man physamp.texi:233: warning: node up pointer for `bppphysamp' is `Top' but up is `bppalnoptim' in menu [ 75%] Compressing info page cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info.gz make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 75%] Built target info /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp: In function 'int main(int, char**)': /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:197:16: warning: ignoring return value of '_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = Test]', declared with attribute 'nodiscard' [-Wunused-result] 197 | remove_if(distances.begin(), distances.end(), Test(rm)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/Bpp/Numeric/VectorTools.h:54, from /usr/include/Bpp/Numeric/DataTable.h:43, from /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:34: /usr/include/c++/15/bits/stl_algo.h:806:5: note: declared here 806 | remove_if(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~ /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:230:16: warning: ignoring return value of '_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = Test]', declared with attribute 'nodiscard' [-Wunused-result] 230 | remove_if(distances.begin(), distances.end(), Test(rm)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_algo.h:806:5: note: declared here 806 | remove_if(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~ /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp: In function 'int main(int, char**)': /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp:444:13: warning: catching polymorphic type 'class bpp::SequenceNotFoundException' by value [-Wcatch-value=] 444 | } catch(SequenceNotFoundException) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Linking CXX executable bppphysamp cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppphysamp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bppphysamp.dir/link.d CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -o bppphysamp /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 87%] Built target bppphysamp [100%] Linking CXX executable bppalnoptim cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnoptim.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bppalnoptim.dir/link.d CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -o bppalnoptim /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [100%] Built target bppalnoptim make[2]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/physamp/ cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/physamp-1.1.0/debian/physamp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/bin/bppalnoptim -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/bin/bppphysamp -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/info/physamp.info.gz -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppalnoptim.1.gz -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppphysamp.1.gz make[1]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'physamp-dbgsym' in '../physamp-dbgsym_1.1.0-6_amd64.deb'. dpkg-deb: building package 'physamp' in '../physamp_1.1.0-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../physamp_1.1.0-6_amd64.buildinfo dpkg-genchanges --build=binary -O../physamp_1.1.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/987520 and its subdirectories I: Current time: Fri Oct 31 08:57:33 -12 2025 I: pbuilder-time-stamp: 1761944253 Fri Oct 31 20:57:34 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Oct 31 20:57:34 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Oct 31 20:57:34 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Oct 31 20:57:34 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ZyynXQ' ==================================================================================== Fri Dec 4 03:20:34 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "2 physamp unstable /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL 1.1.0-6" as arguments. Fri Dec 4 03:20:34 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-th8UdIPZ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 4 03:20:34 UTC 2026 I: Downloading source for unstable/physamp=1.1.0-6 Reading package lists... NOTICE: 'physamp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/physamp.git Please use: git clone https://salsa.debian.org/med-team/physamp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 248 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (dsc) [2143 B] Get:2 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (tar) [242 kB] Get:3 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (diff) [4180 B] Fetched 248 kB in 0s (5694 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'physamp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/physamp.git Please use: git clone https://salsa.debian.org/med-team/physamp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 248 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (dsc) [2143 B] Get:2 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (tar) [242 kB] Get:3 http://deb.debian.org/debian unstable/main physamp 1.1.0-6 (diff) [4180 B] Fetched 248 kB in 0s (5694 kB/s) Download complete and in download only mode ============================================================================= Re-Building physamp in unstable on amd64 on ionos5-amd64 now. Date: Fri Dec 4 03:20:35 UTC 2026 Date UTC: Fri Dec 4 03:20:35 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/pbuilderrc_9yK4 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' physamp = debian-installer -o physamp = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' physamp = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/pbuilderrc_9yK4 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b2 --logfile b2/build.log physamp_1.1.0-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 17:20:35 +14 2026 I: pbuilder-time-stamp: 1796354435 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [physamp_1.1.0-6.dsc] I: copying [./physamp_1.1.0.orig.tar.gz] I: copying [./physamp_1.1.0-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./physamp_1.1.0-6.dsc: no acceptable signature found dpkg-source: info: extracting physamp in physamp-1.1.0 dpkg-source: info: unpacking physamp_1.1.0.orig.tar.gz dpkg-source: info: unpacking physamp_1.1.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying cmake-4.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 4 03:20 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=6832d9ec4c2c4980b6c5123eec4ff622 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3456652 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/pbuilderrc_9yK4 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b2 --logfile b2/build.log physamp_1.1.0-6.dsc' SUDO_GID=110 SUDO_HOME=/var/lib/jenkins SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-dev; however: Package libbpp-phyl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl12t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libintl-perl{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libintl-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 43.5 MB of archives. After unpacking 203 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 16 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 32 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.17.0~rc3-1 [409 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 59 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libbpp-core4t64 amd64 2.4.1-14 [623 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libbpp-core-dev amd64 2.4.1-14 [964 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libbpp-seq12t64 amd64 2.4.1-14 [510 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl12t64 amd64 2.4.1-12 [1713 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-dev amd64 2.4.1-14 [740 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-dev amd64 2.4.1-12 [3029 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libintl-perl all 1.35-1 [690 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-6+b1 [314 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.2-5 [812 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.2-5 [1973 kB] Fetched 43.5 MB in 0s (88.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../13-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../14-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../15-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../21-cmake-data_4.1.1+really3.31.6-2_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../22-libxml2-16_2.15.1+dfsg-0.3_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.1+dfsg-0.3) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../23-libarchive13t64_3.7.4-4+b1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../24-libnghttp3-9_1.12.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../25-libngtcp2-16_1.16.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.16.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../26-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../27-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../28-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../29-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../30-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../31-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../32-libgssapi-krb5-2_1.21.3-5_amd64.deb ... 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Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcurl4t64:amd64 (8.17.0~rc3-1) ... Setting up debhelper (13.28) ... Setting up texinfo (7.2-5) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/physamp-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../physamp_1.1.0-6_source.changes dpkg-buildpackage: info: source package physamp dpkg-buildpackage: info: source version 1.1.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- Found makeinfo as '/usr/bin/makeinfo': 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/depend make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/depend make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/depend make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppalnoptim.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppphysamp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/docs /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/CMakeFiles/info.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/man /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/build make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 12%] Building CXX object physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o [ 25%] Generating info page cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -MF CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o.d -o CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs && /usr/bin/makeinfo --no-split -o /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info /build/reproducible-path/physamp-1.1.0/docs/physamp.texi [ 37%] Compressing manpage bppalnoptim.1 [ 50%] Building CXX object physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppalnoptim.1 > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppalnoptim.1.gz [ 62%] Compressing manpage bppphysamp.1 cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -MF CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o.d -o CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppphysamp.1 > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppphysamp.1.gz make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 62%] Built target man physamp.texi:233: warning: node up pointer for `bppphysamp' is `Top' but up is `bppalnoptim' in menu [ 75%] Compressing info page cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info.gz make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 75%] Built target info /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp: In function 'int main(int, char**)': /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:197:16: warning: ignoring return value of '_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = Test]', declared with attribute 'nodiscard' [-Wunused-result] 197 | remove_if(distances.begin(), distances.end(), Test(rm)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/Bpp/Numeric/VectorTools.h:54, from /usr/include/Bpp/Numeric/DataTable.h:43, from /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:34: /usr/include/c++/15/bits/stl_algo.h:806:5: note: declared here 806 | remove_if(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~ /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp:230:16: warning: ignoring return value of '_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = Test]', declared with attribute 'nodiscard' [-Wunused-result] 230 | remove_if(distances.begin(), distances.end(), Test(rm)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_algo.h:806:5: note: declared here 806 | remove_if(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~ /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp: In function 'int main(int, char**)': /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp:444:13: warning: catching polymorphic type 'class bpp::SequenceNotFoundException' by value [-Wcatch-value=] 444 | } catch(SequenceNotFoundException) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Linking CXX executable bppphysamp cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppphysamp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bppphysamp.dir/link.d CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -o bppphysamp /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 87%] Built target bppphysamp [100%] Linking CXX executable bppalnoptim cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnoptim.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bppalnoptim.dir/link.d CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -o bppalnoptim /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [100%] Built target bppalnoptim make[2]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/physamp/ cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/physamp-1.1.0/debian/physamp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/bin/bppalnoptim -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/bin/bppphysamp -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/info/physamp.info.gz -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppalnoptim.1.gz -- Installing: /build/reproducible-path/physamp-1.1.0/debian/physamp/usr/share/man/man1/bppphysamp.1.gz make[1]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'physamp' in '../physamp_1.1.0-6_amd64.deb'. dpkg-deb: building package 'physamp-dbgsym' in '../physamp-dbgsym_1.1.0-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../physamp_1.1.0-6_amd64.buildinfo dpkg-genchanges --build=binary -O../physamp_1.1.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3456652 and its subdirectories I: Current time: Fri Dec 4 17:21:44 +14 2026 I: pbuilder-time-stamp: 1796354504 + false + set +x Fri Dec 4 03:21:44 UTC 2026 I: Signing ./b2/physamp_1.1.0-6_amd64.buildinfo as physamp_1.1.0-6_amd64.buildinfo.asc Fri Dec 4 03:21:44 UTC 2026 I: Signed ./b2/physamp_1.1.0-6_amd64.buildinfo as ./b2/physamp_1.1.0-6_amd64.buildinfo.asc Fri Dec 4 03:21:44 UTC 2026 - build #2 for physamp/unstable/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Fri Dec 4 03:21:44 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-th8UdIPZ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL: total 68 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 20:57 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 20:58 b2 -rw-rw-r-- 1 jenkins jenkins 2143 Oct 8 18:39 physamp_1.1.0-6.dsc -rw------- 1 jenkins jenkins 52764 Oct 31 20:57 rbuildlog.EVHWXEu /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b1: total 1608 -rw-r--r-- 1 jenkins jenkins 49235 Oct 31 20:57 build.log -rw-r--r-- 1 jenkins jenkins 1349024 Oct 31 20:57 physamp-dbgsym_1.1.0-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 4180 Oct 31 20:57 physamp_1.1.0-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2143 Oct 31 20:57 physamp_1.1.0-6.dsc -rw-r--r-- 1 jenkins jenkins 6426 Oct 31 20:57 physamp_1.1.0-6_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7308 Oct 31 20:57 physamp_1.1.0-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1564 Oct 31 20:57 physamp_1.1.0-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 189356 Oct 31 20:57 physamp_1.1.0-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1414 Oct 31 20:57 physamp_1.1.0-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b2: total 1596 -rw-rw-r-- 1 jenkins jenkins 51299 Oct 31 20:58 build.log -rw-r--r-- 1 jenkins jenkins 1349024 Oct 31 20:58 physamp-dbgsym_1.1.0-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 4180 Oct 31 20:58 physamp_1.1.0-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2143 Oct 31 20:58 physamp_1.1.0-6.dsc -rw-rw-r-- 1 jenkins jenkins 6434 Oct 31 20:58 physamp_1.1.0-6_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7316 Oct 31 20:58 physamp_1.1.0-6_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1564 Oct 31 20:58 physamp_1.1.0-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 189356 Oct 31 20:58 physamp_1.1.0-6_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1414 Oct 31 20:58 physamp_1.1.0-6_source.changes Fri Oct 31 20:58:45 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Oct 31 20:58:45 UTC 2025 I: physamp_1.1.0-6_amd64.changes: Format: 1.8 Date: Wed, 08 Oct 2025 20:21:44 +0200 Source: physamp Binary: physamp physamp-dbgsym Architecture: amd64 Version: 1.1.0-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: physamp - sample sequence alignment corresponding to phylogeny Closes: 1113404 Changes: physamp (1.1.0-6) unstable; urgency=medium . * Team upload. * cmake-4.patch: new: bump minimum cmake to 3.10. (Closes: #1113404) * d/watch: convert to v5 Github template. * d/control: declare compliance to standards version 4.7.2. * d/control: drop redundant Rules-Requires-Root: no. Checksums-Sha1: 874d17f746d196f2d30e12b0c3273afe08549c99 1349024 physamp-dbgsym_1.1.0-6_amd64.deb a6c405751211d508861c8db22131121d1f553d95 6426 physamp_1.1.0-6_amd64.buildinfo c551338946efe7b63843c071dc6d42e580d0a710 189356 physamp_1.1.0-6_amd64.deb Checksums-Sha256: 54d6ba4d771f6da3973eb4e70a384b495d8a7d137546197a93c56a5aaab2caa9 1349024 physamp-dbgsym_1.1.0-6_amd64.deb 6837c7e173990a145087fcf2a2eb91545375ef228b2e1faa8f3cb287fb82cfdf 6426 physamp_1.1.0-6_amd64.buildinfo 097380f03b5ba3da7471c9be0323c416c5eada7797b3ad0f14de289cb321b08f 189356 physamp_1.1.0-6_amd64.deb Files: b7d269a10d53df6f26d31ee775182d73 1349024 debug optional physamp-dbgsym_1.1.0-6_amd64.deb b631b02bd6e2c320622845038b67abcb 6426 science optional physamp_1.1.0-6_amd64.buildinfo 891ed7a0ffbf1dae785ab6ffb63bc439 189356 science optional physamp_1.1.0-6_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/physamp_1.1.0-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/physamp_1.1.0-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/physamp_1.1.0-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/physamp_1.1.0-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/physamp_1.1.0-6_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/physamp_1.1.0-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 20:57:34.218310880 +0000 +++ b2/build.log 2025-10-31 20:58:45.154400607 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 31 08:55:43 -12 2025 -I: pbuilder-time-stamp: 1761944143 +I: Current time: Fri Dec 4 17:20:35 +14 2026 +I: pbuilder-time-stamp: 1796354435 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying cmake-4.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/987520/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 4 03:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='647ab73b7d08408b87121fce441e9ce9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='987520' - PS1='# ' - PS2='> ' + INVOCATION_ID=6832d9ec4c2c4980b6c5123eec4ff622 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3456652 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/pbuilderrc_kCIc --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b1 --logfile b1/build.log physamp_1.1.0-6.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/pbuilderrc_9yK4 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b2 --logfile b2/build.log physamp_1.1.0-6.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/987520/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -192,7 +224,7 @@ Get: 77 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.2-5 [812 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.2-5 [1973 kB] -Fetched 43.5 MB in 1s (86.3 MB/s) +Fetched 43.5 MB in 0s (88.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -538,7 +570,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/physamp-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../physamp_1.1.0-6_source.changes +I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/physamp-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../physamp_1.1.0-6_source.changes dpkg-buildpackage: info: source package physamp dpkg-buildpackage: info: source version 1.1.0-6 dpkg-buildpackage: info: source distribution unstable @@ -553,7 +589,7 @@ dh_update_autotools_config dh_autoreconf dh_auto_configure - cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. + cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done @@ -575,11 +611,12 @@ -- includes: /usr/include -- Found makeinfo as '/usr/bin/makeinfo': 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) --- Configuring done (0.8s) +-- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED @@ -587,20 +624,20 @@ -- Build files have been written to: /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/depend +make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/depend +make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/depend +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppalnoptim.dir/DependInfo.cmake "--color=" -make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp/CMakeFiles/bppphysamp.dir/DependInfo.cmake "--color=" -make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/depend -make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/physamp-1.1.0 /build/reproducible-path/physamp-1.1.0/docs /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/CMakeFiles/info.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' @@ -608,25 +645,25 @@ make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f physamp/CMakeFiles/bppalnoptim.dir/build.make physamp/CMakeFiles/bppalnoptim.dir/build make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/info.dir/build.make docs/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' -make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make -f physamp/CMakeFiles/bppphysamp.dir/build.make physamp/CMakeFiles/bppphysamp.dir/build make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 12%] Building CXX object physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -MF CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o.d -o CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp [ 25%] Generating info page +cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -MF CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o.d -o CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/AlignmentOptimizer.cpp cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs && /usr/bin/makeinfo --no-split -o /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/docs/physamp.info /build/reproducible-path/physamp-1.1.0/docs/physamp.texi -[ 37%] Compressing manpage bppphysamp.1 -[ 50%] Compressing manpage bppalnoptim.1 -[ 62%] Building CXX object physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppphysamp.1 > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppphysamp.1.gz -cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -MF CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o.d -o CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp +[ 37%] Compressing manpage bppalnoptim.1 +[ 50%] Building CXX object physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppalnoptim.1 > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppalnoptim.1.gz +[ 62%] Compressing manpage bppphysamp.1 +cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/physamp-1.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT physamp/CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -MF CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o.d -o CMakeFiles/bppphysamp.dir/PhyloSampler.cpp.o -c /build/reproducible-path/physamp-1.1.0/physamp/PhyloSampler.cpp +cd /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c9n /build/reproducible-path/physamp-1.1.0/man/bppphysamp.1 > /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/man/bppphysamp.1.gz make[3]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' [ 62%] Built target man physamp.texi:233: warning: node up pointer for `bppphysamp' is `Top' but up is `bppalnoptim' in menu @@ -668,11 +705,11 @@ make[2]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' - dh_auto_test +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/physamp/ - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/physamp-1.1.0/debian/physamp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/physamp-1.1.0/debian/physamp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/physamp-1.1.0 -B/build/reproducible-path/physamp-1.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -706,8 +743,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'physamp-dbgsym' in '../physamp-dbgsym_1.1.0-6_amd64.deb'. dpkg-deb: building package 'physamp' in '../physamp_1.1.0-6_amd64.deb'. +dpkg-deb: building package 'physamp-dbgsym' in '../physamp-dbgsym_1.1.0-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../physamp_1.1.0-6_amd64.buildinfo dpkg-genchanges --build=binary -O../physamp_1.1.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -715,12 +752,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3456652/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/987520 and its subdirectories -I: Current time: Fri Oct 31 08:57:33 -12 2025 -I: pbuilder-time-stamp: 1761944253 +I: removing directory /srv/workspace/pbuilder/3456652 and its subdirectories +I: Current time: Fri Dec 4 17:21:44 +14 2026 +I: pbuilder-time-stamp: 1796354504 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/physamp_1.1.0-6.diff: 77.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/physamp_1.1.0-6.diff.gz b2/build.log: 79.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 80.4% -- replaced with stdout Fri Oct 31 20:58:46 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_physamp_unstable_amd64_1761944326 + touch /var/log/reproducible-builds/diffoscope_stamp_physamp_unstable_amd64_1761944326 + RESULT=0 + systemd-run '--description=diffoscope on physamp/1.1.0-6 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_25-57686 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL --run-session -c jenkins-reproducible-unstable-diffoscope-e91f13e7-118a-4054-8f96-2b8cd9fd16fd -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/dbd-tmp-7QZ8YQy ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/physamp_1.1.0-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/physamp_1.1.0-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/physamp_1.1.0-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b1/physamp_1.1.0-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b2/physamp_1.1.0-6_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_25-57686.service; invocation ID: 015237f2f8ea4682afad878321ffc780 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/physamp_1.1.0-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/physamp_1.1.0-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/physamp_1.1.0-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b1/physamp_1.1.0-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.a5x6k1bL/b2/physamp_1.1.0-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 212ms CPU time consumed: 175ms Memory peak: 17.7M (swap: 0B) _ _ __ | |__ _ _ ___ __ _ _ __ ___ _ __ | '_ \| '_ \| | | / __|/ _` | '_ ` _ \| '_ \ | |_) | | | | |_| \__ \ (_| | | | | | | |_) | | .__/|_| |_|\__, |___/\__,_|_| |_| |_| .__/ |_| |___/ |_| Fri Oct 31 20:58:46 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 20:58:46 UTC 2025 I: physamp from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 20:58:46] INFO: Starting at 2025-10-31 20:58:46.981845 [2025-10-31 20:58:47] INFO: Generating the pages of 1 package(s) [2025-10-31 20:58:47] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/physamp didn't produce a buildlog, even though it has been built. [2025-10-31 20:58:47] INFO: Finished at 2025-10-31 20:58:47.251947, took: 0:00:00.270107 Fri Oct 31 20:58:47 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/physamp.html Fri Oct 31 20:58:47 UTC 2025 I: Removing signed physamp_1.1.0-6_amd64.buildinfo.asc files: removed './b1/physamp_1.1.0-6_amd64.buildinfo.asc' removed './b2/physamp_1.1.0-6_amd64.buildinfo.asc' 1761944327 amd64 unstable physamp Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/physamp_1.1.0-6.rbuild.log: 77.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/physamp_1.1.0-6.rbuild.log.gz [2025-10-31 20:58:47] INFO: Starting at 2025-10-31 20:58:47.585151 [2025-10-31 20:58:47] INFO: Generating the pages of 1 package(s) [2025-10-31 20:58:47] INFO: Finished at 2025-10-31 20:58:47.776744, took: 0:00:00.191595 All cleanup done. Fri Oct 31 20:58:47 UTC 2025 - total duration: 0h 3m 21s. Fri Oct 31 20:58:47 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-5R9zrpWb, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 3min 22.052s CPU time consumed: 3.106s Memory peak: 43.2M (swap: 0B)