Running as unit: rb-build-amd64_25-57700.service; invocation ID: 98aeaa5a16654142934e0a94f9ed34d4 ==================================================================================== Fri Oct 31 22:05:44 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_25) on jenkins, called using "ionos1-amd64 ionos5-amd64" as arguments. Fri Oct 31 22:05:44 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-9pFkJVGO" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 22:05:44 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Oct 31 22:05:44 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-e1VoCI' Fri Oct 31 22:05:47 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Oct 31 22:05:47 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-5JlykS' ok, let's check if plink1.9 is building anywhere yet… ok, plink1.9 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of plink1.9 in unstable on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Fri Oct 31 22:06:10 UTC 2025 I: starting to build plink1.9/unstable/amd64 on jenkins on '2025-10-31 22:05' Fri Oct 31 22:06:10 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_25/57700/console.log 1761948370 amd64 unstable plink1.9 Fri Oct 31 22:06:10 UTC 2025 I: Downloading source for unstable/plink1.9=1.90~b7.7-241022-2 --2025-10-31 22:06:10-- http://deb.debian.org/debian/pool/main/p/plink1.9/plink1.9_1.90%7eb7.7-241022-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2335 (2.3K) [text/prs.lines.tag] Saving to: ‘plink1.9_1.90~b7.7-241022-2.dsc’ 0K .. 100% 124M=0s 2025-10-31 22:06:10 (124 MB/s) - ‘plink1.9_1.90~b7.7-241022-2.dsc’ saved [2335/2335] --2025-10-31 22:06:10-- http://deb.debian.org/debian/pool/main/p/plink1.9/plink1.9_1.90%7eb7.7-241022-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2335 (2.3K) [text/prs.lines.tag] Saving to: ‘plink1.9_1.90~b7.7-241022-2.dsc’ 0K .. 100% 124M=0s 2025-10-31 22:06:10 (124 MB/s) - ‘plink1.9_1.90~b7.7-241022-2.dsc’ saved [2335/2335] Fri Oct 31 22:06:10 UTC 2025 I: plink1.9_1.90~b7.7-241022-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plink1.9 Binary: plink1.9 Architecture: any-amd64 any-i386 arm64 armel armhf mipsel Version: 1.90~b7.7-241022-2 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://www.cog-genomics.org/plink/1.9/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/plink1-9 Vcs-Git: https://salsa.debian.org/med-team/plink1-9.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libblas-dev | libblas.so, liblapack-dev | liblapack.so, libsimde-dev, zlib1g-dev Package-List: plink1.9 deb science optional arch=any-amd64,any-i386,arm64,armel,armhf,mipsel Checksums-Sha1: 156dc07b74684417e331b8510ff16ad8545479d5 738740 plink1.9_1.90~b7.7-241022.orig.tar.xz 27027cf6fc5743dd1800114bb6e624d241978275 48392 plink1.9_1.90~b7.7-241022-2.debian.tar.xz Checksums-Sha256: 38ee99816b2462a8b9c846b3a0c2b00b483c2facaac97084a3a8e5cfbd8e94ef 738740 plink1.9_1.90~b7.7-241022.orig.tar.xz 88cf6a8c0bad95ab47d837af9be1317618951f26cd0e84e25154a3ac8f74f15c 48392 plink1.9_1.90~b7.7-241022-2.debian.tar.xz Files: 30272eb2be398bb2fb4d1553ec065369 738740 plink1.9_1.90~b7.7-241022.orig.tar.xz 769c990ff72306b156bfa43a490b3a8e 48392 plink1.9_1.90~b7.7-241022-2.debian.tar.xz Dgit: c88185e6a57aff97b1fce9e5acab2ed6e16bfe43 debian archive/debian/1.90_b7.7-241022-2 https://git.dgit.debian.org/plink1.9 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmgjlT4UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp4MA/+NUFEVTNy/WVMuFGSmM4JNiMQWvDS ja4vQNTXd7BPI88PaEBr9dFzxvhkbgGgB2T++P/u5d1Z9gqfwXVhafQIB2eSAw5v UqwXdbqNVAKeN8vnQmJCHPZPBIV0+BMRSU0kLQBxvZGwoKSPhLITY4G7qAlLAPUq LjBHtf4S9vQ7LWjOrSd/PvoIJ3oDHxIzYegh6V5I8tECZZP7wshnWbEU9b7WYb4T 7onjFZBiLBSByChvvOdD/u6lj44nweRXK6S7MyCmm3tDXJLMxzcRByiNJNWRQmgq Abs/tJBBG/VwXedbH/QJPqPWkT6RJBoKNZWIL56hUDNfJdKTPfQVNV1Y8TBCScBW NDdDkQbo+KaY8xz/DnKLgpsvakgzgHyHg0WHf1V1+mZZzXsvstyLO3wwOffVsfJq HP9wEcumC8/mbW/bAIPcufx/+SbAqtjWl4oqMbqMaC8DBM2nBz/oQNogbvs/es+2 RlIS3ont+nPVe3R2/vtohy97etlFWzFeJuwatyCZ7h+2XKpHG7TckkCL5ny36tyI RbSAMhH+0jxcao5gdpXQwMAmpw1djwCZbCTZYhUvnWS+GIvdvhG1l88C/CVnpJeC QHvVr5Dm+OUlMX5MpMLyb/EyrV0xtsooD8NvT1GhDhbd+cJywQEIgT8vN6O1/PGN 6uOVdHCh84ddIWw= =jbkO -----END PGP SIGNATURE----- Fri Oct 31 22:06:10 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 22:06:10 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Oct 31 22:06:10 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Oct 31 22:06:10 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Oct 31 22:06:10 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-iNYdAO' ==================================================================================== Fri Oct 31 22:06:11 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 plink1.9 unstable /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y 1.90~b7.7-241022-2" as arguments. Fri Oct 31 22:06:11 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-djkojENX" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 22:06:11 UTC 2025 I: Downloading source for unstable/plink1.9=1.90~b7.7-241022-2 Reading package lists... NOTICE: 'plink1.9' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plink1-9.git Please use: git clone https://salsa.debian.org/med-team/plink1-9.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 789 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (dsc) [2335 B] Get:2 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (tar) [739 kB] Get:3 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (diff) [48.4 kB] Fetched 789 kB in 0s (31.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'plink1.9' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plink1-9.git Please use: git clone https://salsa.debian.org/med-team/plink1-9.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 789 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (dsc) [2335 B] Get:2 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (tar) [739 kB] Get:3 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (diff) [48.4 kB] Fetched 789 kB in 0s (31.7 MB/s) Download complete and in download only mode ============================================================================= Building plink1.9 in unstable on amd64 on ionos1-amd64 now. Date: Fri Oct 31 22:06:11 UTC 2025 Date UTC: Fri Oct 31 22:06:11 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 10:06:12 -12 2025 I: pbuilder-time-stamp: 1761948372 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plink1.9_1.90~b7.7-241022-2.dsc] I: copying [./plink1.9_1.90~b7.7-241022.orig.tar.xz] I: copying [./plink1.9_1.90~b7.7-241022-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./plink1.9_1.90~b7.7-241022-2.dsc: no acceptable signature found dpkg-source: info: extracting plink1.9 in plink1.9-1.90~b7.7-241022 dpkg-source: info: unpacking plink1.9_1.90~b7.7-241022.orig.tar.xz dpkg-source: info: unpacking plink1.9_1.90~b7.7-241022-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying blas.patch dpkg-source: info: applying handle-sse2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1799637/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='67d803f2e9724384aeb0b3afaaf3cfc0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1799637' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/pbuilderrc_SDoE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b1 --logfile b1/build.log plink1.9_1.90~b7.7-241022-2.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1799637/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev | libblas.so, liblapack-dev | liblapack.so, libsimde-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev | liblapack.so; however: Package liblapack-dev is not installed. Package liblapack.so is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsimde-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 22.6 MB of archives. After unpacking 97.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 22.6 MB in 4s (6306 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... 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Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:amd64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libblas-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up liblapack-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/plink1.9-1.90~b7.7-241022/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plink1.9_1.90~b7.7-241022-2_source.changes dpkg-buildpackage: info: source package plink1.9 dpkg-buildpackage: info: source version 1.90~b7.7-241022-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_clean make -j40 clean make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' rm -f plink1.9 rm -f plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_build make -j40 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink.c -o plink.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_assoc.c -o plink_assoc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_calc.c -o plink_calc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_cluster.c -o plink_cluster.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_cnv.c -o plink_cnv.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_common.c -o plink_common.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_data.c -o plink_data.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_dosage.c -o plink_dosage.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_family.c -o plink_family.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_filter.c -o plink_filter.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_glm.c -o plink_glm.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_help.c -o plink_help.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_homozyg.c -o plink_homozyg.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_lasso.c -o plink_lasso.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_ld.c -o plink_ld.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_matrix.c -o plink_matrix.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_misc.c -o plink_misc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_perm.c -o plink_perm.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_rserve.c -o plink_rserve.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_set.c -o plink_set.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_stats.c -o plink_stats.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection SFMT.c -o SFMT.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection dcdflib.c -o dcdflib.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection pigz.c -o pigz.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection yarn.c -o yarn.o g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection Rconnection.cc -o Rconnection.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection hfile.c -o hfile.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection bgzf.c -o bgzf.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -llapack -lblas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' mv plink plink1.9 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installchangelogs debian/upstream.docs/upstream.changelog make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installman debian/plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_md5sums dh_builddeb dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b7.7-241022-2_amd64.deb'. dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b7.7-241022-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../plink1.9_1.90~b7.7-241022-2_amd64.buildinfo dpkg-genchanges --build=binary -O../plink1.9_1.90~b7.7-241022-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1799637 and its subdirectories I: Current time: Fri Oct 31 10:08:26 -12 2025 I: pbuilder-time-stamp: 1761948506 Fri Oct 31 22:08:26 UTC 2025 I: Signing ./b1/plink1.9_1.90~b7.7-241022-2_amd64.buildinfo as plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc Fri Oct 31 22:08:26 UTC 2025 I: Signed ./b1/plink1.9_1.90~b7.7-241022-2_amd64.buildinfo as ./b1/plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc Fri Oct 31 22:08:26 UTC 2025 - build #1 for plink1.9/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 22:08:26 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-djkojENX, removing. /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 22:08 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 22:06 b2 -rw-rw-r-- 1 jenkins jenkins 2335 May 13 19:02 plink1.9_1.90~b7.7-241022-2.dsc -rw------- 1 jenkins jenkins 3499 Oct 31 22:06 rbuildlog.vXMfBtw /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b1: total 3920 -rw-r--r-- 1 jenkins jenkins 34653 Oct 31 22:08 build.log -rw-r--r-- 1 jenkins jenkins 2986684 Oct 31 22:08 plink1.9-dbgsym_1.90~b7.7-241022-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 48392 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2335 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2.dsc -rw-r--r-- 1 jenkins jenkins 5066 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5948 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1848 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 907716 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1710 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b2: total 0 Fri Oct 31 22:08:27 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 10:06:12 -12 2025 I: pbuilder-time-stamp: 1761948372 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plink1.9_1.90~b7.7-241022-2.dsc] I: copying [./plink1.9_1.90~b7.7-241022.orig.tar.xz] I: copying [./plink1.9_1.90~b7.7-241022-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./plink1.9_1.90~b7.7-241022-2.dsc: no acceptable signature found dpkg-source: info: extracting plink1.9 in plink1.9-1.90~b7.7-241022 dpkg-source: info: unpacking plink1.9_1.90~b7.7-241022.orig.tar.xz dpkg-source: info: unpacking plink1.9_1.90~b7.7-241022-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying blas.patch dpkg-source: info: applying handle-sse2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1799637/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='67d803f2e9724384aeb0b3afaaf3cfc0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1799637' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/pbuilderrc_SDoE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b1 --logfile b1/build.log plink1.9_1.90~b7.7-241022-2.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1799637/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev | libblas.so, liblapack-dev | liblapack.so, libsimde-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev | liblapack.so; however: Package liblapack-dev is not installed. Package liblapack.so is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsimde-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 22.6 MB of archives. After unpacking 97.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 22.6 MB in 4s (6306 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.194-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.194-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.15.1+dfsg-0.3_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.1+dfsg-0.3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../29-libblas3_3.12.1-7_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-7) ... Selecting previously unselected package libblas-dev:amd64. Preparing to unpack .../30-libblas-dev_3.12.1-7_amd64.deb ... Unpacking libblas-dev:amd64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../31-libgfortran5_15.2.0-7_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-7) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../32-liblapack3_3.12.1-7_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-7) ... Selecting previously unselected package liblapack-dev:amd64. 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Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:amd64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libblas-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up liblapack-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/plink1.9-1.90~b7.7-241022/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plink1.9_1.90~b7.7-241022-2_source.changes dpkg-buildpackage: info: source package plink1.9 dpkg-buildpackage: info: source version 1.90~b7.7-241022-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_clean make -j40 clean make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' rm -f plink1.9 rm -f plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_build make -j40 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink.c -o plink.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_assoc.c -o plink_assoc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_calc.c -o plink_calc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_cluster.c -o plink_cluster.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_cnv.c -o plink_cnv.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_common.c -o plink_common.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_data.c -o plink_data.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_dosage.c -o plink_dosage.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_family.c -o plink_family.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_filter.c -o plink_filter.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_glm.c -o plink_glm.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_help.c -o plink_help.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_homozyg.c -o plink_homozyg.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_lasso.c -o plink_lasso.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_ld.c -o plink_ld.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_matrix.c -o plink_matrix.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_misc.c -o plink_misc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_perm.c -o plink_perm.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_rserve.c -o plink_rserve.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_set.c -o plink_set.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_stats.c -o plink_stats.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection SFMT.c -o SFMT.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection dcdflib.c -o dcdflib.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection pigz.c -o pigz.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection yarn.c -o yarn.o g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection Rconnection.cc -o Rconnection.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection hfile.c -o hfile.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection bgzf.c -o bgzf.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -llapack -lblas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' mv plink plink1.9 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installchangelogs debian/upstream.docs/upstream.changelog make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installman debian/plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_md5sums dh_builddeb dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b7.7-241022-2_amd64.deb'. dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b7.7-241022-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../plink1.9_1.90~b7.7-241022-2_amd64.buildinfo dpkg-genchanges --build=binary -O../plink1.9_1.90~b7.7-241022-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1799637 and its subdirectories I: Current time: Fri Oct 31 10:08:26 -12 2025 I: pbuilder-time-stamp: 1761948506 Fri Oct 31 22:08:29 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Oct 31 22:08:29 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Oct 31 22:08:29 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Oct 31 22:08:29 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-446dsP' ==================================================================================== Fri Dec 4 04:31:34 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "2 plink1.9 unstable /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y 1.90~b7.7-241022-2" as arguments. Fri Dec 4 04:31:34 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-bqZ2jUjF" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 4 04:31:35 UTC 2026 I: Downloading source for unstable/plink1.9=1.90~b7.7-241022-2 Reading package lists... NOTICE: 'plink1.9' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plink1-9.git Please use: git clone https://salsa.debian.org/med-team/plink1-9.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 789 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (dsc) [2335 B] Get:2 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (tar) [739 kB] Get:3 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (diff) [48.4 kB] Fetched 789 kB in 0s (32.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'plink1.9' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plink1-9.git Please use: git clone https://salsa.debian.org/med-team/plink1-9.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 789 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (dsc) [2335 B] Get:2 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (tar) [739 kB] Get:3 http://deb.debian.org/debian unstable/main plink1.9 1.90~b7.7-241022-2 (diff) [48.4 kB] Fetched 789 kB in 0s (32.9 MB/s) Download complete and in download only mode ============================================================================= Re-Building plink1.9 in unstable on amd64 on ionos5-amd64 now. Date: Fri Dec 4 04:31:35 UTC 2026 Date UTC: Fri Dec 4 04:31:35 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/pbuilderrc_xiw8 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' plink1.9 = debian-installer -o plink1.9 = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' plink1.9 = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/pbuilderrc_xiw8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b2 --logfile b2/build.log plink1.9_1.90~b7.7-241022-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 18:31:35 +14 2026 I: pbuilder-time-stamp: 1796358695 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plink1.9_1.90~b7.7-241022-2.dsc] I: copying [./plink1.9_1.90~b7.7-241022.orig.tar.xz] I: copying [./plink1.9_1.90~b7.7-241022-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./plink1.9_1.90~b7.7-241022-2.dsc: no acceptable signature found dpkg-source: info: extracting plink1.9 in plink1.9-1.90~b7.7-241022 dpkg-source: info: unpacking plink1.9_1.90~b7.7-241022.orig.tar.xz dpkg-source: info: unpacking plink1.9_1.90~b7.7-241022-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying blas.patch dpkg-source: info: applying handle-sse2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 4 04:31 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=f22d25650d604dfcbd4b055f478ebeca LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4136148 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/pbuilderrc_xiw8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b2 --logfile b2/build.log plink1.9_1.90~b7.7-241022-2.dsc' SUDO_GID=110 SUDO_HOME=/var/lib/jenkins SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev | libblas.so, liblapack-dev | liblapack.so, libsimde-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev | liblapack.so; however: Package liblapack-dev is not installed. Package liblapack.so is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsimde-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 22.6 MB of archives. After unpacking 97.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 22.6 MB in 2s (10.5 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.194-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.194-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.15.1+dfsg-0.3_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.1+dfsg-0.3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../29-libblas3_3.12.1-7_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-7) ... Selecting previously unselected package libblas-dev:amd64. Preparing to unpack .../30-libblas-dev_3.12.1-7_amd64.deb ... Unpacking libblas-dev:amd64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../31-libgfortran5_15.2.0-7_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-7) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../32-liblapack3_3.12.1-7_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-7) ... Selecting previously unselected package liblapack-dev:amd64. 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Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:amd64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libblas-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up liblapack-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/plink1.9-1.90~b7.7-241022/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../plink1.9_1.90~b7.7-241022-2_source.changes dpkg-buildpackage: info: source package plink1.9 dpkg-buildpackage: info: source version 1.90~b7.7-241022-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_clean make -j42 clean make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' rm -f plink1.9 rm -f plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_build make -j42 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink.c -o plink.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_assoc.c -o plink_assoc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_calc.c -o plink_calc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_cluster.c -o plink_cluster.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_cnv.c -o plink_cnv.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_common.c -o plink_common.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_data.c -o plink_data.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_dosage.c -o plink_dosage.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_family.c -o plink_family.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_filter.c -o plink_filter.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_glm.c -o plink_glm.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_help.c -o plink_help.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_homozyg.c -o plink_homozyg.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_lasso.c -o plink_lasso.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_ld.c -o plink_ld.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_matrix.c -o plink_matrix.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_misc.c -o plink_misc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_perm.c -o plink_perm.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_rserve.c -o plink_rserve.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_set.c -o plink_set.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_stats.c -o plink_stats.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection SFMT.c -o SFMT.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection dcdflib.c -o dcdflib.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection pigz.c -o pigz.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection yarn.c -o yarn.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection Rconnection.cc -o Rconnection.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection hfile.c -o hfile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection bgzf.c -o bgzf.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -llapack -lblas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' mv plink plink1.9 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installchangelogs debian/upstream.docs/upstream.changelog make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_installman debian/plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_md5sums dh_builddeb dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b7.7-241022-2_amd64.deb'. dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b7.7-241022-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../plink1.9_1.90~b7.7-241022-2_amd64.buildinfo dpkg-genchanges --build=binary -O../plink1.9_1.90~b7.7-241022-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4136148 and its subdirectories I: Current time: Fri Dec 4 18:33:56 +14 2026 I: pbuilder-time-stamp: 1796358836 + false + set +x Fri Dec 4 04:33:56 UTC 2026 I: Signing ./b2/plink1.9_1.90~b7.7-241022-2_amd64.buildinfo as plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc Fri Dec 4 04:33:56 UTC 2026 I: Signed ./b2/plink1.9_1.90~b7.7-241022-2_amd64.buildinfo as ./b2/plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc Fri Dec 4 04:33:56 UTC 2026 - build #2 for plink1.9/unstable/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Fri Dec 4 04:33:56 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-bqZ2jUjF, removing. /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y: total 52 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 22:08 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 22:10 b2 -rw-rw-r-- 1 jenkins jenkins 2335 May 13 19:02 plink1.9_1.90~b7.7-241022-2.dsc -rw------- 1 jenkins jenkins 38438 Oct 31 22:08 rbuildlog.vXMfBtw /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b1: total 3928 -rw-r--r-- 1 jenkins jenkins 34653 Oct 31 22:08 build.log -rw-r--r-- 1 jenkins jenkins 2986684 Oct 31 22:08 plink1.9-dbgsym_1.90~b7.7-241022-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 48392 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2335 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2.dsc -rw-r--r-- 1 jenkins jenkins 5066 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5948 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1848 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 907716 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1710 Oct 31 22:08 plink1.9_1.90~b7.7-241022-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b2: total 3920 -rw-rw-r-- 1 jenkins jenkins 36670 Oct 31 22:10 build.log -rw-r--r-- 1 jenkins jenkins 2986684 Oct 31 22:10 plink1.9-dbgsym_1.90~b7.7-241022-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 48392 Oct 31 22:10 plink1.9_1.90~b7.7-241022-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2335 Oct 31 22:10 plink1.9_1.90~b7.7-241022-2.dsc -rw-rw-r-- 1 jenkins jenkins 5074 Oct 31 22:10 plink1.9_1.90~b7.7-241022-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5956 Oct 31 22:10 plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1848 Oct 31 22:10 plink1.9_1.90~b7.7-241022-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 907716 Oct 31 22:10 plink1.9_1.90~b7.7-241022-2_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1710 Oct 31 22:10 plink1.9_1.90~b7.7-241022-2_source.changes Fri Oct 31 22:10:58 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Oct 31 22:11:00 UTC 2025 I: plink1.9_1.90~b7.7-241022-2_amd64.changes: Format: 1.8 Date: Tue, 13 May 2025 20:32:04 +0200 Source: plink1.9 Binary: plink1.9 plink1.9-dbgsym Architecture: amd64 Version: 1.90~b7.7-241022-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: plink1.9 - whole-genome association analysis toolset Closes: 1105180 Changes: plink1.9 (1.90~b7.7-241022-2) unstable; urgency=medium . * Team upload. * d/control: build depends on libsimde-dev. * handle-sse2.patch: use the system's libsimde-dev. * d/control: append support for architecture arm64. (Closes: #1105180) * d/{control,rules}: populate Built-Using with simde version. This is needed for GPL-3 compliance. * d/copyright: update the FSF contact address. * d/control: declare compliance to standards version 4.7.2. Checksums-Sha1: 60b6f72567a0c88b07a2d6b1989b3386e0d647bd 2986684 plink1.9-dbgsym_1.90~b7.7-241022-2_amd64.deb e5ebd222e89caeb9f384bd6d89dcc4aa3103b6cb 5066 plink1.9_1.90~b7.7-241022-2_amd64.buildinfo 6375d471b424cc1d5a4afc8aa066513d8857375c 907716 plink1.9_1.90~b7.7-241022-2_amd64.deb Checksums-Sha256: a573d9f85b7c772abe133952c6636069285aa9c2e0c3d109b5d8a093fd998eef 2986684 plink1.9-dbgsym_1.90~b7.7-241022-2_amd64.deb 2cca293f87ac8bd1bbce610a993f6544505fd629859bcf52496dfe5595382b38 5066 plink1.9_1.90~b7.7-241022-2_amd64.buildinfo 554594307547afc7edd18b4858e53ae20a9016094c9b07ce4a5e84ed94030402 907716 plink1.9_1.90~b7.7-241022-2_amd64.deb Files: 7968176609a000d6a676f936d1f3dbd6 2986684 debug optional plink1.9-dbgsym_1.90~b7.7-241022-2_amd64.deb 3630cbbf5a6de7a1c38dda64eef75f38 5066 science optional plink1.9_1.90~b7.7-241022-2_amd64.buildinfo 537cdd0925499c670227aa33652f1694 907716 science optional plink1.9_1.90~b7.7-241022-2_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/plink1.9_1.90~b7.7-241022-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/plink1.9_1.90~b7.7-241022-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/plink1.9_1.90~b7.7-241022-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/plink1.9_1.90~b7.7-241022-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/plink1.9_1.90~b7.7-241022-2_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/plink1.9_1.90~b7.7-241022-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 22:08:27.215634732 +0000 +++ b2/build.log 2025-10-31 22:10:57.979823701 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 31 10:06:12 -12 2025 -I: pbuilder-time-stamp: 1761948372 +I: Current time: Fri Dec 4 18:31:35 +14 2026 +I: pbuilder-time-stamp: 1796358695 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying handle-sse2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1799637/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 4 04:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='67d803f2e9724384aeb0b3afaaf3cfc0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1799637' - PS1='# ' - PS2='> ' + INVOCATION_ID=f22d25650d604dfcbd4b055f478ebeca + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4136148 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/pbuilderrc_SDoE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b1 --logfile b1/build.log plink1.9_1.90~b7.7-241022-2.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/pbuilderrc_xiw8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b2 --logfile b2/build.log plink1.9_1.90~b7.7-241022-2.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1799637/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -154,7 +186,7 @@ Get: 34 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 22.6 MB in 4s (6306 kB/s) +Fetched 22.6 MB in 2s (10.5 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -317,7 +349,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/plink1.9-1.90~b7.7-241022/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plink1.9_1.90~b7.7-241022-2_source.changes +I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/plink1.9-1.90~b7.7-241022/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../plink1.9_1.90~b7.7-241022-2_source.changes dpkg-buildpackage: info: source package plink1.9 dpkg-buildpackage: info: source version 1.90~b7.7-241022-2 dpkg-buildpackage: info: source distribution unstable @@ -329,7 +365,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_clean - make -j40 clean + make -j42 clean make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' @@ -345,7 +381,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' dh_auto_build - make -j40 INSTALL="install --strip-program=true" + make -j42 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink.c -o plink.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_assoc.c -o plink_assoc.o @@ -354,59 +390,59 @@ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_cnv.c -o plink_cnv.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_common.c -o plink_common.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_data.c -o plink_data.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_dosage.c -o plink_dosage.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_family.c -o plink_family.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_filter.c -o plink_filter.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_glm.c -o plink_glm.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_help.c -o plink_help.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_homozyg.c -o plink_homozyg.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_lasso.c -o plink_lasso.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_ld.c -o plink_ld.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_matrix.c -o plink_matrix.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_misc.c -o plink_misc.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_perm.c -o plink_perm.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_rserve.c -o plink_rserve.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_set.c -o plink_set.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_rserve.c -o plink_rserve.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_set.c -o plink_set.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection plink_stats.c -o plink_stats.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection SFMT.c -o SFMT.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection SFMT.c -o SFMT.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection dcdflib.c -o dcdflib.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection pigz.c -o pigz.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection yarn.c -o yarn.o -g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection Rconnection.cc -o Rconnection.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection Rconnection.cc -o Rconnection.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection hfile.c -o hfile.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.7-241022=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection bgzf.c -o bgzf.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -llapack -lblas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' mv plink plink1.9 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.7-241022' - dh_auto_test +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_install @@ -446,12 +482,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4136148/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1799637 and its subdirectories -I: Current time: Fri Oct 31 10:08:26 -12 2025 -I: pbuilder-time-stamp: 1761948506 +I: removing directory /srv/workspace/pbuilder/4136148 and its subdirectories +I: Current time: Fri Dec 4 18:33:56 +14 2026 +I: pbuilder-time-stamp: 1796358836 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/plink1.9_1.90~b7.7-241022-2.diff: 82.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/plink1.9_1.90~b7.7-241022-2.diff.gz b2/build.log: 81.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 82.8% -- replaced with stdout Fri Oct 31 22:11:01 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_plink1.9_unstable_amd64_1761948661 + touch /var/log/reproducible-builds/diffoscope_stamp_plink1.9_unstable_amd64_1761948661 + RESULT=0 + systemd-run '--description=diffoscope on plink1.9/1.90~b7.7-241022-2 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_25-57700 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y --run-session -c jenkins-reproducible-unstable-diffoscope-15d8726f-b2dd-4fe1-962e-f9781608ed61 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/dbd-tmp-TXOQokn ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/plink1.9_1.90~b7.7-241022-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/plink1.9_1.90~b7.7-241022-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/plink1.9_1.90~b7.7-241022-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b1/plink1.9_1.90~b7.7-241022-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b2/plink1.9_1.90~b7.7-241022-2_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_25-57700.service; invocation ID: d2b66f21b8da4411b4ce6af260670bf1 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/plink1.9_1.90~b7.7-241022-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/plink1.9_1.90~b7.7-241022-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/plink1.9_1.90~b7.7-241022-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b1/plink1.9_1.90~b7.7-241022-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.awjlDs8y/b2/plink1.9_1.90~b7.7-241022-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 207ms CPU time consumed: 172ms Memory peak: 16.9M (swap: 0B) _ _ _ _ ___ _ __ | (_)_ __ | | _/ |/ _ \ | '_ \| | | '_ \| |/ / | (_) | | |_) | | | | | | <| |\__, | | .__/|_|_|_| |_|_|\_\_(_)/_/ |_| Fri Oct 31 22:11:01 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 22:11:01 UTC 2025 I: plink1.9 from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 22:11:02] INFO: Starting at 2025-10-31 22:11:02.089694 [2025-10-31 22:11:02] INFO: Generating the pages of 1 package(s) [2025-10-31 22:11:02] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/plink1.9 didn't produce a buildlog, even though it has been built. [2025-10-31 22:11:02] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/plink1.9_1.90~b6.26-220402-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/plink1.9_1.90~b6.26-220402-1.diff.gz is missing [2025-10-31 22:11:02] INFO: Finished at 2025-10-31 22:11:02.370748, took: 0:00:00.281057 Fri Oct 31 22:11:02 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/plink1.9.html Fri Oct 31 22:11:02 UTC 2025 I: Removing signed plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc files: removed './b1/plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc' removed './b2/plink1.9_1.90~b7.7-241022-2_amd64.buildinfo.asc' 1761948662 amd64 unstable plink1.9 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/plink1.9_1.90~b7.7-241022-2.rbuild.log: 78.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/plink1.9_1.90~b7.7-241022-2.rbuild.log.gz [2025-10-31 22:11:02] INFO: Starting at 2025-10-31 22:11:02.688676 [2025-10-31 22:11:02] INFO: Generating the pages of 1 package(s) [2025-10-31 22:11:02] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/plink1.9_1.90~b6.26-220402-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/plink1.9_1.90~b6.26-220402-1.diff.gz is missing [2025-10-31 22:11:02] INFO: Finished at 2025-10-31 22:11:02.967025, took: 0:00:00.278353 All cleanup done. Fri Oct 31 22:11:03 UTC 2025 - total duration: 0h 5m 17s. Fri Oct 31 22:11:03 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-9pFkJVGO, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 5min 18.244s CPU time consumed: 3.153s Memory peak: 47.7M (swap: 0B)