Running as unit: rb-build-amd64_27-66397.service ==================================================================================== Thu Aug 7 10:09:49 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_27) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Thu Aug 7 10:09:49 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-XZcU4wEd" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Aug 7 10:09:49 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Aug 7 10:09:49 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ww61qB' Thu Aug 7 10:09:50 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Aug 7 10:09:50 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ZDWmX4' ok, let's check if libpwizlite is building anywhere yet… ok, libpwizlite is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libpwizlite in unstable on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Thu Aug 7 10:10:11 UTC 2025 I: starting to build libpwizlite/unstable/amd64 on jenkins on '2025-08-07 10:09' Thu Aug 7 10:10:11 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/66397/console.log 1754561411 amd64 unstable libpwizlite Thu Aug 7 10:10:11 UTC 2025 I: Downloading source for unstable/libpwizlite=3.0.8-1 --2025-08-07 10:10:11-- http://deb.debian.org/debian/pool/main/libp/libpwizlite/libpwizlite_3.0.8-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2218 (2.2K) [text/prs.lines.tag] Saving to: ‘libpwizlite_3.0.8-1.dsc’ 0K .. 100% 221M=0s 2025-08-07 10:10:11 (221 MB/s) - ‘libpwizlite_3.0.8-1.dsc’ saved [2218/2218] --2025-08-07 10:10:11-- http://deb.debian.org/debian/pool/main/libp/libpwizlite/libpwizlite_3.0.8-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2218 (2.2K) [text/prs.lines.tag] Saving to: ‘libpwizlite_3.0.8-1.dsc’ 0K .. 100% 221M=0s 2025-08-07 10:10:11 (221 MB/s) - ‘libpwizlite_3.0.8-1.dsc’ saved [2218/2218] Thu Aug 7 10:10:11 UTC 2025 I: libpwizlite_3.0.8-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libpwizlite Binary: libpwizlite-dev, libpwizlite3t64 Architecture: any Version: 3.0.8-1 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: https://salsa.debian.org/debichem-team/libpwizlite Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/libpwizlite Vcs-Git: https://salsa.debian.org/debichem-team/libpwizlite.git Build-Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev Package-List: libpwizlite-dev deb libdevel optional arch=any libpwizlite3t64 deb libs optional arch=any Checksums-Sha1: e55fd47cc2236ffd2034b5ca424f25d3a42f6ef7 832233 libpwizlite_3.0.8.orig.tar.gz 7f5b228b88010083e51115029b412032482b4f2e 8624 libpwizlite_3.0.8-1.debian.tar.xz Checksums-Sha256: 8e316f7578deb71dbf5b54f5f5f6f549427b26a34ea6f80c80e364b5cc50d32d 832233 libpwizlite_3.0.8.orig.tar.gz 713d81eec247d82ba52860db9d8bc2e7ba87b8d5084a83bd979b414f438c2375 8624 libpwizlite_3.0.8-1.debian.tar.xz Files: d2be8d4e7e66308270fe507b34aacf60 832233 libpwizlite_3.0.8.orig.tar.gz 398a7eaa1e0c1af2e7cc4416601b9120 8624 libpwizlite_3.0.8-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAmZF/2sACgkQQatITXaU z0Lolw/8Dks3DI5cR/1Fg4zTP4OWK1LpLgMsiSp5JpferFt+2r95jRZMTwUtJ9Sf iLdrabXJjR9Ep3F5UdbrY+B2unnrzzXFhmL71OIZHBwJsgZPP7RXdCuaNjB61ih0 RsTuAQWj0YIckHcQ1kNT37CbeKOvtNv+k76mWtL+H9zAX7dLeEtjctqpepRgAIaO JSECsyWwDi9P3ps3ac182/5CwibDYRz7MY37IqXNpEwMhCLN6g0DN9Ryfn5N0sPA D4rFI9ZTZ5K57VAkig2Y4wk8wDZlghvNi+vKOiQPX8ng3JxR1wpYWZAZ2Umq/vVf GlcyQOV5runwLp64mmsJj13ZciQ1PBNWKb8xEBwamuCbebPNcvaoAaGLBa89CdhF hkQVR20RpOrLSx/eOAfjXUY9FlLxVzSTfcyJszOiqWAL0k/ijj9LS1mcnaXhMZ/T mT+i2844A4aVRp5xBHE9L8vFpGJUMAUrH5w3yw/mChz6BJanaeAg31kKXMbk6ewU W0FqbhNARiZfdgaZSL3lkcogLVGdQX6d2IaXty/nPW0vv+dwvT066ad2WoxgEc5+ n7TL+wPWGCo76GSRwamHkbcLClMk1gkxc4HzfCmib21KjVncy7+v4xQnUNsdYEaX LEeWT8gKEH0T21p7KN+5jiJTBc1fISewWahoZwlE347YbcEtWnU= =AESd -----END PGP SIGNATURE----- Thu Aug 7 10:10:11 UTC 2025 I: Checking whether the package is not for us Thu Aug 7 10:10:11 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Aug 7 10:10:11 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Aug 7 10:10:11 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Aug 7 10:10:11 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Pistwf' ==================================================================================== Thu Aug 7 10:10:12 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 libpwizlite unstable /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8 3.0.8-1" as arguments. Thu Aug 7 10:10:12 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-6pgPCJqz" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Aug 7 10:10:12 UTC 2025 I: Downloading source for unstable/libpwizlite=3.0.8-1 Reading package lists... NOTICE: 'libpwizlite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/libpwizlite.git Please use: git clone https://salsa.debian.org/debichem-team/libpwizlite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 843 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (dsc) [2218 B] Get:2 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (tar) [832 kB] Get:3 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (diff) [8624 B] Fetched 843 kB in 0s (23.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libpwizlite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/libpwizlite.git Please use: git clone https://salsa.debian.org/debichem-team/libpwizlite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 843 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (dsc) [2218 B] Get:2 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (tar) [832 kB] Get:3 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (diff) [8624 B] Fetched 843 kB in 0s (23.3 MB/s) Download complete and in download only mode ============================================================================= Building libpwizlite in unstable on amd64 on ionos11-amd64 now. Date: Thu Aug 7 10:10:12 UTC 2025 Date UTC: Thu Aug 7 10:10:12 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 6 22:10:12 -12 2025 I: pbuilder-time-stamp: 1754561412 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpwizlite_3.0.8-1.dsc] I: copying [./libpwizlite_3.0.8.orig.tar.gz] I: copying [./libpwizlite_3.0.8-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libpwizlite_3.0.8-1.dsc: no acceptable signature found dpkg-source: info: extracting libpwizlite in libpwizlite-3.0.8 dpkg-source: info: unpacking libpwizlite_3.0.8.orig.tar.gz dpkg-source: info: unpacking libpwizlite_3.0.8-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2579436/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='35923b242ce946daa6fd0bee02af025f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2579436' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/pbuilderrc_a4QG --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b1 --logfile b1/build.log libpwizlite_3.0.8-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2579436/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-docutils{a} python3-minimal{a} python3-roman{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix python3-pil python3-pygments wget 0 packages upgraded, 150 newly installed, 0 to remove and 0 not upgraded. Need to get 93.1 MB of archives. After unpacking 506 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 40 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 60 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 87 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4.2 [234 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4.2 [236 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-4.2 [240 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-4.2 [246 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-4.2 [230 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-4.2 [333 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-4.2 [373 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-4.2 [239 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4.2 [282 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-4.2 [231 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-4.2 [232 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4.2 [297 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 104 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 109 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.2 [270 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-4.2 [277 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 112 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1.1 [116 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-2 [598 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.5.1-1 [2954 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.14.1-2 [510 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-roman all 5.0-1 [10.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Fetched 93.1 MB in 3s (30.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20184 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-4_all.deb ... Unpacking tzdata (2025b-4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21199 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-2_amd64.deb ... 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Setting up python3-docutils (0.21.2+dfsg-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/libpwizlite-3.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpwizlite_3.0.8-1_source.changes dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --build-system=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8' rm -f debian/libpwizlite.3 rm -rf debian/includes rm -rf obj-x86_64-linux-gnu dh_clean make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8' dh_autoreconf_clean -O--build-system=cmake dh_clean -O--build-system=cmake debian/rules binary dh binary --build-system=cmake dh_update_autotools_config -O--build-system=cmake dh_autoreconf -O--build-system=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8' dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/usr" \ -DCMAKE_BUILD_TYPE=release cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release .. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- CMAKE_LIBRARY_ARCHITECTURE: x86_64-linux-gnu -- Set CMAKE_INSTALL_PREFIX to /usr -- Install directory prefix: /usr -- CMAKE_INSTALL_FULL_LIBDIR: /usr/lib/x86_64-linux-gnu -- CMAKE_INSTALL_FULL_INCLUDEDIR: /usr/include Configuring build for project libpwizlite -- Set CMAKE_CXX_STANDARD to 17 (required) -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- CMAKE_SOURCE_DIR: /build/reproducible-path/libpwizlite-3.0.8 UNIX non APPLE environment Please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug ../development -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") CMake Warning (dev) at CMakeStuff/toolchains/unix-toolchain.cmake:12 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:106 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams thread filesystem chrono -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") found components: CXX -- HDF5_CXX_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_CXX_INCLUDE_DIRS: /usr/include/hdf5/serial -- Starting configuration of libpwizlite -- The build toolchain is: Linux  -- CMAKE_CURRENT_BINARY_DIR: /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu -- CMAKE_BUILD_TYPE: release. -- Adding subdirectory src for PROJECT: libpwizlite -- Setting -Wall. -- Boost_LIBRARIES found 1_83 -- Boost_INCLUDES: /usr/include -- Boost_LIB_DIRS: /usr/lib/x86_64-linux-gnu STATUS: Now managing the CPack process -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 sh debian/make-included-headers-hierarchy.sh baseName: convert.hpp dirName: boost/nowide 'boost/nowide/convert.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/convert.hpp' baseName: args.hpp dirName: boost/nowide 'boost/nowide/args.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: windows.hpp dirName: boost/nowide 'boost/nowide/windows.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/windows.hpp' baseName: config.hpp dirName: boost/nowide 'boost/nowide/config.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/config.hpp' baseName: iostream.hpp dirName: boost/nowide 'boost/nowide/iostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/iostream.hpp' baseName: cenv.hpp dirName: boost/nowide 'boost/nowide/cenv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cenv.hpp' baseName: cstdlib.hpp dirName: boost/nowide 'boost/nowide/cstdlib.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' baseName: cstdio.hpp dirName: boost/nowide 'boost/nowide/cstdio.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdio.hpp' baseName: system.hpp dirName: boost/nowide 'boost/nowide/system.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/system.hpp' baseName: stackstring.hpp dirName: boost/nowide 'boost/nowide/stackstring.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/stackstring.hpp' baseName: filebuf.hpp dirName: boost/nowide 'boost/nowide/filebuf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/filebuf.hpp' baseName: fstream.hpp dirName: boost/nowide 'boost/nowide/fstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/fstream.hpp' baseName: macros.hpp dirName: boost/enum 'boost/enum/macros.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/macros.hpp' baseName: bitfield.hpp dirName: boost/enum 'boost/enum/bitfield.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/bitfield.hpp' baseName: base.hpp dirName: boost/enum 'boost/enum/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/base.hpp' baseName: iterator.hpp dirName: boost/enum 'boost/enum/iterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/iterator.hpp' baseName: singleton.hpp dirName: boost/utility 'boost/utility/singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/singleton.hpp' baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' baseName: member_dereference.hpp dirName: boost/utility/detail 'boost/utility/detail/member_dereference.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' baseName: restricted.hpp dirName: boost/utility/detail 'boost/utility/detail/restricted.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: thread_specific_singleton.hpp dirName: boost/utility 'boost/utility/thread_specific_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' baseName: mutexed_singleton.hpp dirName: boost/utility 'boost/utility/mutexed_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: enum.hpp dirName: boost 'boost/enum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum.hpp' baseName: foreach_field.hpp dirName: boost 'boost/foreach_field.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/foreach_field.hpp' baseName: base64.hpp dirName: boost/iostreams/filter 'boost/iostreams/filter/base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' baseName: arbitrary_positional_facade.hpp dirName: boost/iostreams 'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' baseName: Version.hpp dirName: pwiz 'pwiz/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/Version.hpp' baseName: IsotopeCalculator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' baseName: Chemistry.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' baseName: MzMobilityWindow.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' baseName: ChemistryData.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' baseName: Ion.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Ion.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' baseName: MZTolerance.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' baseName: IsotopeEnvelopeEstimator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' baseName: IsotopeTable.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' baseName: XMLWriter.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' baseName: SAXParser.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' baseName: Stats.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Stats.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' baseName: OrderedPair.hpp dirName: pwiz/utility/math 'pwiz/utility/math/OrderedPair.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' baseName: qr.hpp dirName: pwiz/utility/math 'pwiz/utility/math/qr.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' baseName: MatrixInverse.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatrixInverse.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' baseName: Types.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Types.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: HouseholderQR.hpp dirName: pwiz/utility/math 'pwiz/utility/math/HouseholderQR.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' baseName: LinearLeastSquares.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' baseName: LinearSolver.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearSolver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' baseName: erf.hpp dirName: pwiz/utility/math 'pwiz/utility/math/erf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' baseName: MatchedFilter.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatchedFilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' baseName: round.hpp dirName: pwiz/utility/math 'pwiz/utility/math/round.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/round.hpp' baseName: Parabola.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Parabola.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' baseName: scale.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' baseName: interpolation.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' baseName: copyif.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' baseName: constants.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' baseName: diff.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' baseName: interpolate.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' baseName: filter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' baseName: gauss.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' baseName: preparedata.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' baseName: gaussfilter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' baseName: bin1d.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample/utilities 'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' baseName: breakspec.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' baseName: masscomparefunctors.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' baseName: unit.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/unit.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' baseName: TabReader.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/TabReader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' baseName: Stream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Stream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' baseName: Environment.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Environment.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' baseName: Base64.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' baseName: Singleton.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' baseName: optimized_lexical_cast.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' baseName: Std.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: Image.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Image.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' baseName: MSIHandler.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/MSIHandler.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' baseName: Filesystem.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Filesystem.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' baseName: IntegerSet.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IntegerSet.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' baseName: Container.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Container.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' baseName: VendorReaderTestHarness.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' baseName: Once.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Once.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' baseName: IterationListener.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IterationListener.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' baseName: Exception.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Exception.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' baseName: BinaryData.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/BinaryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' baseName: Timer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Timer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' baseName: virtual_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/virtual_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' baseName: shared_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/shared_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' baseName: SHA1.h dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' baseName: random_access_compressed_ifstream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' baseName: String.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/String.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' baseName: endian.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/endian.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: automation_vector.h dirName: pwiz/utility/misc 'pwiz/utility/misc/automation_vector.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' baseName: mru_list.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/mru_list.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' baseName: almost_equal.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/almost_equal.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' baseName: Export.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Export.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' baseName: COMInitializer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/COMInitializer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' baseName: DateTime.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/DateTime.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' baseName: Version.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' baseName: Connection_mzMLb.hpp dirName: pwiz/data/msdata/mzmlb 'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' baseName: SpectrumListCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' baseName: SpectrumListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' baseName: Diff.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' baseName: RAMPAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' baseName: ChromatogramList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' baseName: MSDataFile.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataFile.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' baseName: MSData.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' baseName: SpectrumList_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' baseName: References.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/References.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' baseName: MSNumpress.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSNumpress.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' baseName: LegacyAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' baseName: Reader.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Reader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' baseName: DefaultReaderList.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' baseName: Serializer_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' baseName: SpectrumList_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' baseName: IO.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/IO.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' baseName: Serializer_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' baseName: SpectrumIterator.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' baseName: SpectrumList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' baseName: examples.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/examples.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' baseName: MemoryMRUCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' baseName: Index_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Index_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' baseName: MSDataMerger.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' baseName: ChromatogramList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' baseName: TextWriter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/TextWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' baseName: Index.hpp dirName: pwiz/data/common 'pwiz/data/common/Index.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Index.hpp' baseName: MemoryIndex.hpp dirName: pwiz/data/common 'pwiz/data/common/MemoryIndex.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' baseName: BinaryIndexStream.hpp dirName: pwiz/data/common 'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' baseName: obo.hpp dirName: pwiz/data/common 'pwiz/data/common/obo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/obo.hpp' baseName: diff_std.hpp dirName: pwiz/data/common 'pwiz/data/common/diff_std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' baseName: Unimod.hpp dirName: pwiz/data/common 'pwiz/data/common/Unimod.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' baseName: cv.hpp dirName: pwiz/data/common 'pwiz/data/common/cv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/cv.hpp' baseName: ParamTypes.hpp dirName: pwiz/data/common 'pwiz/data/common/ParamTypes.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' baseName: CVTranslator.hpp dirName: pwiz/data/common 'pwiz/data/common/CVTranslator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' baseName: FrequencyData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' baseName: MinimumPepXML.hpp dirName: pwiz/data/misc 'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' baseName: PeakData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/PeakData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' baseName: FrequencyDataTestData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' baseName: SampleDatum.hpp dirName: pwiz/data/misc 'pwiz/data/misc/SampleDatum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' baseName: CalibrationParameters.hpp dirName: pwiz/data/misc 'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' baseName: DemuxDataProcessingStrings.hpp dirName: pwiz/analysis/demux 'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' baseName: SpectrumList_Demux.hpp dirName: pwiz/analysis/spectrum_processing 'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8' dh_auto_build -O--build-system=cmake cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.8 -B/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/depend make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpwizlite-3.0.8 /build/reproducible-path/libpwizlite-3.0.8/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpwizlite-3.0.8 /build/reproducible-path/libpwizlite-3.0.8/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o [ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o [ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o [ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o [ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o [ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o [ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o [ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o [ 13%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o [ 14%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o [ 15%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o [ 18%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o [ 18%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o [ 19%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o [ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o [ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o [ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o [ 24%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o [ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o [ 26%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o [ 28%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB 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-I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 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-ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ [ 50%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp [ 51%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp In file included from /usr/include/c++/14/iostream:41, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here 346 | long long extrapol; | ^~~~~~~~ In file included from /usr/include/c++/14/iostream:41, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here 346 | long long extrapol; | ^~~~~~~~ In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ [ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp [ 53%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_construct.h:61, from /usr/include/c++/14/bits/stl_tempbuf.h:61, from /usr/include/c++/14/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_construct.h:61, from /usr/include/c++/14/bits/stl_tempbuf.h:61, from /usr/include/c++/14/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1121 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] 86 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] 87 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] 95 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] 120 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] 165 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] 201 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] 86 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] 87 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] 95 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] 120 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] 165 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] 201 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1121 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] 85 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] 136 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] 195 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] 267 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] 504 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] 697 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] 698 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] 970 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1359 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] 1360 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] 85 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] 136 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] 195 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] 267 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1693 | for (int i = 1; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1712 | for (int i = 2; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1774 | for (int i = 1; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1793 | for (int i = 2; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter] 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter] 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] 504 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] 697 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] 698 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] 970 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1359 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] 1360 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 107 | msd.id = msd.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] 133 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] 136 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] 216 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] 219 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1693 | for (int i = 1; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1712 | for (int i = 2; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] 273 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] 276 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] 296 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1774 | for (int i = 1; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1793 | for (int i = 2; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] 317 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] 320 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] 353 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter] 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter] 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 397 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 401 | result.id = result.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] 380 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] 383 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] 410 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] 463 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] 464 | MSData& result, | ~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] 465 | int runIndex, | ~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] 466 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] 488 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] 533 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] 536 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter] 3333 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 107 | msd.id = msd.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] 133 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] 136 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] 216 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] 219 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] 273 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] 276 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] 296 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] 317 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] 320 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] 353 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 397 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 401 | result.id = result.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter] 3333 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] 380 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] 383 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] 410 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] 463 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] 464 | MSData& result, | ~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] 465 | int runIndex, | ~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] 466 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] 488 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here 587 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] 533 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] 536 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here 587 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 103 | for (int o=0;o struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o [ 63%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp [ 64%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp [ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp [ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp [ 68%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 103 | for (int o=0;o instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please | ~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] 278 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] 279 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here 131 | size_t byteCount; | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 166 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 195 | if (bfs::path(sf.location).leaf() == "AcqData" && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 207 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 216 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 222 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 228 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 454 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); | ~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter] 1027 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); | ~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter] 1156 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter] 1237 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter] 1285 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter] 1353 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 166 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 195 | if (bfs::path(sf.location).leaf() == "AcqData" && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 207 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 216 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 222 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 228 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 454 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); | ~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter] 1027 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); | ~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter] 1156 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter] 1237 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter] 1285 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter] 1353 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here 131 | size_t byteCount; | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp [ 84%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 85%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp [ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp [ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] 337 | mru_list taskMRU_; | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] 334 | bool continueOnError_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) | ^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] 337 | mru_list taskMRU_; | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] 334 | bool continueOnError_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) | ^~~~ [ 95%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp [ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined 54 | #pragma GCC warning "WIN32 is NOT defined" | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined 54 | #pragma GCC warning "WIN32 is NOT defined" | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/include/boost/algorithm/string/iter_find.hpp:27, from /usr/include/boost/algorithm/string/split.hpp:16, from /usr/include/boost/algorithm/string.hpp:23, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/include/boost/algorithm/string/iter_find.hpp:27, from /usr/include/boost/algorithm/string/split.hpp:16, from /usr/include/boost/algorithm/string.hpp:23, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter 'filepath' [-Wunused-parameter] 350 | force_close_handles_to_filepath(const std::string &filepath, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 351 | bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 686 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 710 | bfs::copy_directory(from, to, ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 764 | bfs::copy_directory(from, to, *ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 766 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter 'path' [-Wunused-parameter] 967 | check_path_length(const string &path) | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter 'filepath' [-Wunused-parameter] 350 | force_close_handles_to_filepath(const std::string &filepath, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 351 | bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 686 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 710 | bfs::copy_directory(from, to, ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 764 | bfs::copy_directory(from, to, *ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 766 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter 'path' [-Wunused-parameter] 967 | check_path_length(const string &path) | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds=] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here 501 | bool inCDATA; | ^~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds=] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here 501 | bool inCDATA; | ^~~~~~~ [ 98%] Linking CXX shared library libpwizlite.so cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 [100%] Linking CXX static library libpwizlite.a cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/pwizlite-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-static.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pwizlite-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.8 "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o" -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/x86_64-linux-gnu/libz.so -Wl,--no-as-needed /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so -Wl,--as-needed /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.8 libpwizlite.so.3 libpwizlite.so make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [100%] Built target pwizlite-shared /usr/bin/ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o" /usr/bin/ranlib libpwizlite.a make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [100%] Built target pwizlite-static make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' dh_auto_test -O--build-system=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--build-system=cmake dh_prep -O--build-system=cmake dh_auto_install -O--build-system=cmake cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/libpwizlite-3.0.8/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.8 -B/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "release" -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pwizlite/FindPwizLite.cmake -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libpwizlite.pc -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8" to "" -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.a make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' dh_install -O--build-system=cmake dh_installdocs -O--build-system=cmake dh_installchangelogs -O--build-system=cmake dh_installman -O--build-system=cmake dh_installsystemduser -O--build-system=cmake dh_lintian -O--build-system=cmake dh_perl -O--build-system=cmake dh_link -O--build-system=cmake dh_strip_nondeterminism -O--build-system=cmake dh_compress -O--build-system=cmake dh_fixperms -O--build-system=cmake dh_missing -O--build-system=cmake dh_dwz -a -O--build-system=cmake dh_strip -a -O--build-system=cmake dh_makeshlibs -a -O--build-system=cmake dh_shlibdeps -a -O--build-system=cmake dpkg-shlibdeps: warning: symbol H5P_CLS_DATASET_CREATE_ID_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Aread used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pset_cache used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Aopen used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Screate_simple used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Fopen used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_FLOAT_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pget_cache used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5P_CLS_FILE_ACCESS_ID_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Dread used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: 43 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 was not linked against libhdf5_serial_cpp.so.310 (it uses none of the library's symbols) dh_installdeb -O--build-system=cmake dh_gencontrol -O--build-system=cmake dh_md5sums -O--build-system=cmake dh_builddeb -O--build-system=cmake dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.8-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3t64-dbgsym' in '../libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3t64' in '../libpwizlite3t64_3.0.8-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libpwizlite_3.0.8-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libpwizlite_3.0.8-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2579436 and its subdirectories I: Current time: Wed Aug 6 22:12:08 -12 2025 I: pbuilder-time-stamp: 1754561528 Thu Aug 7 10:12:08 UTC 2025 I: Signing ./b1/libpwizlite_3.0.8-1_amd64.buildinfo as libpwizlite_3.0.8-1_amd64.buildinfo.asc Thu Aug 7 10:12:08 UTC 2025 I: Signed ./b1/libpwizlite_3.0.8-1_amd64.buildinfo as ./b1/libpwizlite_3.0.8-1_amd64.buildinfo.asc Thu Aug 7 10:12:08 UTC 2025 - build #1 for libpwizlite/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Thu Aug 7 10:12:08 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-6pgPCJqz, removing. /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 10:12 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 10:10 b2 -rw-r--r-- 1 jenkins jenkins 2218 May 16 2024 libpwizlite_3.0.8-1.dsc -rw------- 1 jenkins jenkins 3351 Aug 7 10:10 rbuildlog.qU0rbYP /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b1: total 16456 -rw-r--r-- 1 jenkins jenkins 687174 Aug 7 10:12 build.log -rw-r--r-- 1 jenkins jenkins 1267684 Aug 7 10:12 libpwizlite-dev_3.0.8-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 13075752 Aug 7 10:12 libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 926192 Aug 7 10:12 libpwizlite3t64_3.0.8-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 8624 Aug 7 10:12 libpwizlite_3.0.8-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2218 Aug 7 10:12 libpwizlite_3.0.8-1.dsc -rw-r--r-- 1 jenkins jenkins 9289 Aug 7 10:12 libpwizlite_3.0.8-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 10171 Aug 7 10:12 libpwizlite_3.0.8-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1791 Aug 7 10:12 libpwizlite_3.0.8-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1495 Aug 7 10:12 libpwizlite_3.0.8-1_source.changes -rw-r--r-- 1 jenkins jenkins 832233 Aug 7 10:12 libpwizlite_3.0.8.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b2: total 0 Thu Aug 7 10:12:08 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 6 22:10:12 -12 2025 I: pbuilder-time-stamp: 1754561412 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpwizlite_3.0.8-1.dsc] I: copying [./libpwizlite_3.0.8.orig.tar.gz] I: copying [./libpwizlite_3.0.8-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libpwizlite_3.0.8-1.dsc: no acceptable signature found dpkg-source: info: extracting libpwizlite in libpwizlite-3.0.8 dpkg-source: info: unpacking libpwizlite_3.0.8.orig.tar.gz dpkg-source: info: unpacking libpwizlite_3.0.8-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2579436/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='35923b242ce946daa6fd0bee02af025f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2579436' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/pbuilderrc_a4QG --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b1 --logfile b1/build.log libpwizlite_3.0.8-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2579436/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-docutils{a} python3-minimal{a} python3-roman{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix python3-pil python3-pygments wget 0 packages upgraded, 150 newly installed, 0 to remove and 0 not upgraded. Need to get 93.1 MB of archives. After unpacking 506 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 40 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 60 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 87 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4.2 [234 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4.2 [236 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-4.2 [240 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-4.2 [246 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-4.2 [230 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-4.2 [333 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-4.2 [373 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-4.2 [239 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4.2 [282 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-4.2 [231 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-4.2 [232 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4.2 [297 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 104 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 109 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.2 [270 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-4.2 [277 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 112 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1.1 [116 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-2 [598 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.5.1-1 [2954 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.14.1-2 [510 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-roman all 5.0-1 [10.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Fetched 93.1 MB in 3s (30.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21199 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package libproc2-0:amd64. 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Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../032-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../033-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../034-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../035-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../036-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. 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Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-2) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libarchive13t64:amd64 (3.7.4-4) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libicu-dev:amd64 (76.1-4) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-4.2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1) ... Setting up python3.13 (3.13.5-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.5-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up python3-roman (5.0-1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up libcurl4t64:amd64 (8.14.1-2) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... Setting up debhelper (13.24.2) ... Setting up dh-exec (0.30) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up cmake (3.31.6-2) ... Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-openssl-dev:amd64 (8.14.1-2) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/libpwizlite-3.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpwizlite_3.0.8-1_source.changes dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --build-system=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8' rm -f debian/libpwizlite.3 rm -rf debian/includes rm -rf obj-x86_64-linux-gnu dh_clean make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8' dh_autoreconf_clean -O--build-system=cmake dh_clean -O--build-system=cmake debian/rules binary dh binary --build-system=cmake dh_update_autotools_config -O--build-system=cmake dh_autoreconf -O--build-system=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8' dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/usr" \ -DCMAKE_BUILD_TYPE=release cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release .. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- CMAKE_LIBRARY_ARCHITECTURE: x86_64-linux-gnu -- Set CMAKE_INSTALL_PREFIX to /usr -- Install directory prefix: /usr -- CMAKE_INSTALL_FULL_LIBDIR: /usr/lib/x86_64-linux-gnu -- CMAKE_INSTALL_FULL_INCLUDEDIR: /usr/include Configuring build for project libpwizlite -- Set CMAKE_CXX_STANDARD to 17 (required) -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- CMAKE_SOURCE_DIR: /build/reproducible-path/libpwizlite-3.0.8 UNIX non APPLE environment Please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug ../development -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") CMake Warning (dev) at CMakeStuff/toolchains/unix-toolchain.cmake:12 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:106 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams thread filesystem chrono -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") found components: CXX -- HDF5_CXX_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_CXX_INCLUDE_DIRS: /usr/include/hdf5/serial -- Starting configuration of libpwizlite -- The build toolchain is: Linux  -- CMAKE_CURRENT_BINARY_DIR: /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu -- CMAKE_BUILD_TYPE: release. -- Adding subdirectory src for PROJECT: libpwizlite -- Setting -Wall. -- Boost_LIBRARIES found 1_83 -- Boost_INCLUDES: /usr/include -- Boost_LIB_DIRS: /usr/lib/x86_64-linux-gnu STATUS: Now managing the CPack process -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 sh debian/make-included-headers-hierarchy.sh baseName: convert.hpp dirName: boost/nowide 'boost/nowide/convert.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/convert.hpp' baseName: args.hpp dirName: boost/nowide 'boost/nowide/args.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: windows.hpp dirName: boost/nowide 'boost/nowide/windows.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/windows.hpp' baseName: config.hpp dirName: boost/nowide 'boost/nowide/config.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/config.hpp' baseName: iostream.hpp dirName: boost/nowide 'boost/nowide/iostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/iostream.hpp' baseName: cenv.hpp dirName: boost/nowide 'boost/nowide/cenv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cenv.hpp' baseName: cstdlib.hpp dirName: boost/nowide 'boost/nowide/cstdlib.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' baseName: cstdio.hpp dirName: boost/nowide 'boost/nowide/cstdio.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdio.hpp' baseName: system.hpp dirName: boost/nowide 'boost/nowide/system.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/system.hpp' baseName: stackstring.hpp dirName: boost/nowide 'boost/nowide/stackstring.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/stackstring.hpp' baseName: filebuf.hpp dirName: boost/nowide 'boost/nowide/filebuf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/filebuf.hpp' baseName: fstream.hpp dirName: boost/nowide 'boost/nowide/fstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/fstream.hpp' baseName: macros.hpp dirName: boost/enum 'boost/enum/macros.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/macros.hpp' baseName: bitfield.hpp dirName: boost/enum 'boost/enum/bitfield.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/bitfield.hpp' baseName: base.hpp dirName: boost/enum 'boost/enum/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/base.hpp' baseName: iterator.hpp dirName: boost/enum 'boost/enum/iterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/iterator.hpp' baseName: singleton.hpp dirName: boost/utility 'boost/utility/singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/singleton.hpp' baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' baseName: member_dereference.hpp dirName: boost/utility/detail 'boost/utility/detail/member_dereference.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' baseName: restricted.hpp dirName: boost/utility/detail 'boost/utility/detail/restricted.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: thread_specific_singleton.hpp dirName: boost/utility 'boost/utility/thread_specific_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' baseName: mutexed_singleton.hpp dirName: boost/utility 'boost/utility/mutexed_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: enum.hpp dirName: boost 'boost/enum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum.hpp' baseName: foreach_field.hpp dirName: boost 'boost/foreach_field.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/foreach_field.hpp' baseName: base64.hpp dirName: boost/iostreams/filter 'boost/iostreams/filter/base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' baseName: arbitrary_positional_facade.hpp dirName: boost/iostreams 'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' baseName: Version.hpp dirName: pwiz 'pwiz/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/Version.hpp' baseName: IsotopeCalculator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' baseName: Chemistry.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' baseName: MzMobilityWindow.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' baseName: ChemistryData.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' baseName: Ion.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Ion.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' baseName: MZTolerance.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' baseName: IsotopeEnvelopeEstimator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' baseName: IsotopeTable.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' baseName: XMLWriter.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' baseName: SAXParser.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' baseName: Stats.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Stats.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' baseName: OrderedPair.hpp dirName: pwiz/utility/math 'pwiz/utility/math/OrderedPair.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' baseName: qr.hpp dirName: pwiz/utility/math 'pwiz/utility/math/qr.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' baseName: MatrixInverse.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatrixInverse.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' baseName: Types.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Types.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: HouseholderQR.hpp dirName: pwiz/utility/math 'pwiz/utility/math/HouseholderQR.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' baseName: LinearLeastSquares.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' baseName: LinearSolver.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearSolver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' baseName: erf.hpp dirName: pwiz/utility/math 'pwiz/utility/math/erf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' baseName: MatchedFilter.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatchedFilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' baseName: round.hpp dirName: pwiz/utility/math 'pwiz/utility/math/round.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/round.hpp' baseName: Parabola.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Parabola.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' baseName: scale.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' baseName: interpolation.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' baseName: copyif.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' baseName: constants.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' baseName: diff.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' baseName: interpolate.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' baseName: filter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' baseName: gauss.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' baseName: preparedata.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' baseName: gaussfilter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' baseName: bin1d.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample/utilities 'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' baseName: breakspec.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' baseName: masscomparefunctors.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' baseName: unit.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/unit.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' baseName: TabReader.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/TabReader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' baseName: Stream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Stream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' baseName: Environment.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Environment.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' baseName: Base64.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' baseName: Singleton.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' baseName: optimized_lexical_cast.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' baseName: Std.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: Image.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Image.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' baseName: MSIHandler.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/MSIHandler.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' baseName: Filesystem.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Filesystem.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' baseName: IntegerSet.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IntegerSet.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' baseName: Container.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Container.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' baseName: VendorReaderTestHarness.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' baseName: Once.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Once.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' baseName: IterationListener.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IterationListener.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' baseName: Exception.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Exception.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' baseName: BinaryData.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/BinaryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' baseName: Timer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Timer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' baseName: virtual_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/virtual_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' baseName: shared_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/shared_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' baseName: SHA1.h dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' baseName: random_access_compressed_ifstream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' baseName: String.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/String.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' baseName: endian.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/endian.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: automation_vector.h dirName: pwiz/utility/misc 'pwiz/utility/misc/automation_vector.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' baseName: mru_list.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/mru_list.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' baseName: almost_equal.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/almost_equal.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' baseName: Export.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Export.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' baseName: COMInitializer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/COMInitializer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' baseName: DateTime.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/DateTime.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' baseName: Version.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' baseName: Connection_mzMLb.hpp dirName: pwiz/data/msdata/mzmlb 'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' baseName: SpectrumListCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' baseName: SpectrumListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' baseName: Diff.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' baseName: RAMPAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' baseName: ChromatogramList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' baseName: MSDataFile.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataFile.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' baseName: MSData.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' baseName: SpectrumList_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' baseName: References.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/References.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' baseName: MSNumpress.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSNumpress.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' baseName: LegacyAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' baseName: Reader.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Reader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' baseName: DefaultReaderList.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' baseName: Serializer_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' baseName: SpectrumList_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' baseName: IO.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/IO.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' baseName: Serializer_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' baseName: SpectrumIterator.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' baseName: SpectrumList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' baseName: examples.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/examples.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' baseName: MemoryMRUCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' baseName: Index_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Index_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' baseName: MSDataMerger.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' baseName: ChromatogramList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' baseName: TextWriter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/TextWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' baseName: Index.hpp dirName: pwiz/data/common 'pwiz/data/common/Index.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Index.hpp' baseName: MemoryIndex.hpp dirName: pwiz/data/common 'pwiz/data/common/MemoryIndex.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' baseName: BinaryIndexStream.hpp dirName: pwiz/data/common 'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' baseName: obo.hpp dirName: pwiz/data/common 'pwiz/data/common/obo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/obo.hpp' baseName: diff_std.hpp dirName: pwiz/data/common 'pwiz/data/common/diff_std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' baseName: Unimod.hpp dirName: pwiz/data/common 'pwiz/data/common/Unimod.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' baseName: cv.hpp dirName: pwiz/data/common 'pwiz/data/common/cv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/cv.hpp' baseName: ParamTypes.hpp dirName: pwiz/data/common 'pwiz/data/common/ParamTypes.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' baseName: CVTranslator.hpp dirName: pwiz/data/common 'pwiz/data/common/CVTranslator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' baseName: FrequencyData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' baseName: MinimumPepXML.hpp dirName: pwiz/data/misc 'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' baseName: PeakData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/PeakData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' baseName: FrequencyDataTestData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' baseName: SampleDatum.hpp dirName: pwiz/data/misc 'pwiz/data/misc/SampleDatum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' baseName: CalibrationParameters.hpp dirName: pwiz/data/misc 'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' baseName: DemuxDataProcessingStrings.hpp dirName: pwiz/analysis/demux 'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' baseName: SpectrumList_Demux.hpp dirName: pwiz/analysis/spectrum_processing 'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8' dh_auto_build -O--build-system=cmake cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.8 -B/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/depend make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpwizlite-3.0.8 /build/reproducible-path/libpwizlite-3.0.8/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpwizlite-3.0.8 /build/reproducible-path/libpwizlite-3.0.8/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o [ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o [ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o [ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o [ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o [ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o [ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o [ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o [ 13%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o [ 14%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o [ 15%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o [ 18%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o [ 18%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o [ 19%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o [ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o [ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o [ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o [ 24%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o [ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o [ 26%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o [ 28%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp [ 30%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o [ 31%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o [ 31%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o [ 32%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF 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CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp [ 47%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp [ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ [ 50%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp [ 51%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp In file included from /usr/include/c++/14/iostream:41, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here 346 | long long extrapol; | ^~~~~~~~ In file included from /usr/include/c++/14/iostream:41, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here 346 | long long extrapol; | ^~~~~~~~ In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ [ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp [ 53%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_construct.h:61, from /usr/include/c++/14/bits/stl_tempbuf.h:61, from /usr/include/c++/14/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_construct.h:61, from /usr/include/c++/14/bits/stl_tempbuf.h:61, from /usr/include/c++/14/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1121 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] 86 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] 87 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] 95 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] 120 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] 165 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] 201 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] 86 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] 87 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] 95 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] 120 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] 165 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] 201 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1121 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] 85 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] 136 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] 195 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] 267 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] 504 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] 697 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] 698 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] 970 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1359 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] 1360 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] 85 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] 136 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] 195 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] 267 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1693 | for (int i = 1; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1712 | for (int i = 2; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1774 | for (int i = 1; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1793 | for (int i = 2; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter] 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter] 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] 504 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] 697 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] 698 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] 970 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1359 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] 1360 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 107 | msd.id = msd.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] 133 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] 136 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] 216 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] 219 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1693 | for (int i = 1; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1712 | for (int i = 2; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] 273 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] 276 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] 296 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1774 | for (int i = 1; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1793 | for (int i = 2; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] 317 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] 320 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] 353 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter] 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter] 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 397 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 401 | result.id = result.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] 380 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] 383 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] 410 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] 463 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] 464 | MSData& result, | ~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] 465 | int runIndex, | ~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] 466 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] 488 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] 533 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] 536 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter] 3333 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 107 | msd.id = msd.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] 133 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] 136 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] 216 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] 219 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] 273 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] 276 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] 296 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] 317 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] 320 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] 353 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 397 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 401 | result.id = result.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter] 3333 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] 380 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] 383 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] 410 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] 463 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] 464 | MSData& result, | ~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] 465 | int runIndex, | ~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] 466 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] 488 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here 587 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] 533 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] 536 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here 587 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 103 | for (int o=0;o struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o [ 63%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp [ 64%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp [ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp [ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp [ 68%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 103 | for (int o=0;o instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please | ~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] 278 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] 279 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here 131 | size_t byteCount; | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 166 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 195 | if (bfs::path(sf.location).leaf() == "AcqData" && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 207 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 216 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 222 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 228 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 454 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); | ~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter] 1027 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); | ~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter] 1156 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter] 1237 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter] 1285 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter] 1353 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 166 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 195 | if (bfs::path(sf.location).leaf() == "AcqData" && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 207 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 216 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 222 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 228 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 454 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); | ~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter] 1027 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); | ~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter] 1156 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter] 1237 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter] 1285 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter] 1353 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here 131 | size_t byteCount; | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp [ 84%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 85%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp [ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp [ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] 337 | mru_list taskMRU_; | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] 334 | bool continueOnError_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) | ^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] 337 | mru_list taskMRU_; | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] 334 | bool continueOnError_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) | ^~~~ [ 95%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp [ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined 54 | #pragma GCC warning "WIN32 is NOT defined" | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined 54 | #pragma GCC warning "WIN32 is NOT defined" | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/include/boost/algorithm/string/iter_find.hpp:27, from /usr/include/boost/algorithm/string/split.hpp:16, from /usr/include/boost/algorithm/string.hpp:23, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/include/boost/algorithm/string/iter_find.hpp:27, from /usr/include/boost/algorithm/string/split.hpp:16, from /usr/include/boost/algorithm/string.hpp:23, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter 'filepath' [-Wunused-parameter] 350 | force_close_handles_to_filepath(const std::string &filepath, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 351 | bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 686 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 710 | bfs::copy_directory(from, to, ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 764 | bfs::copy_directory(from, to, *ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 766 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter 'path' [-Wunused-parameter] 967 | check_path_length(const string &path) | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter 'filepath' [-Wunused-parameter] 350 | force_close_handles_to_filepath(const std::string &filepath, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 351 | bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 686 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 710 | bfs::copy_directory(from, to, ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 764 | bfs::copy_directory(from, to, *ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 766 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter 'path' [-Wunused-parameter] 967 | check_path_length(const string &path) | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds=] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here 501 | bool inCDATA; | ^~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds=] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here 501 | bool inCDATA; | ^~~~~~~ [ 98%] Linking CXX shared library libpwizlite.so cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 [100%] Linking CXX static library libpwizlite.a cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/pwizlite-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-static.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pwizlite-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.8 "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o" -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/x86_64-linux-gnu/libz.so -Wl,--no-as-needed /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so -Wl,--as-needed /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.8 libpwizlite.so.3 libpwizlite.so make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [100%] Built target pwizlite-shared /usr/bin/ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o" /usr/bin/ranlib libpwizlite.a make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [100%] Built target pwizlite-static make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' dh_auto_test -O--build-system=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--build-system=cmake dh_prep -O--build-system=cmake dh_auto_install -O--build-system=cmake cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/libpwizlite-3.0.8/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.8 -B/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "release" -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pwizlite/FindPwizLite.cmake -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libpwizlite.pc -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8" to "" -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.a make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' dh_install -O--build-system=cmake dh_installdocs -O--build-system=cmake dh_installchangelogs -O--build-system=cmake dh_installman -O--build-system=cmake dh_installsystemduser -O--build-system=cmake dh_lintian -O--build-system=cmake dh_perl -O--build-system=cmake dh_link -O--build-system=cmake dh_strip_nondeterminism -O--build-system=cmake dh_compress -O--build-system=cmake dh_fixperms -O--build-system=cmake dh_missing -O--build-system=cmake dh_dwz -a -O--build-system=cmake dh_strip -a -O--build-system=cmake dh_makeshlibs -a -O--build-system=cmake dh_shlibdeps -a -O--build-system=cmake dpkg-shlibdeps: warning: symbol H5P_CLS_DATASET_CREATE_ID_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Aread used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pset_cache used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Aopen used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Screate_simple used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Fopen used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_FLOAT_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pget_cache used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5P_CLS_FILE_ACCESS_ID_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Dread used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: 43 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 was not linked against libhdf5_serial_cpp.so.310 (it uses none of the library's symbols) dh_installdeb -O--build-system=cmake dh_gencontrol -O--build-system=cmake dh_md5sums -O--build-system=cmake dh_builddeb -O--build-system=cmake dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.8-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3t64-dbgsym' in '../libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3t64' in '../libpwizlite3t64_3.0.8-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libpwizlite_3.0.8-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libpwizlite_3.0.8-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2579436 and its subdirectories I: Current time: Wed Aug 6 22:12:08 -12 2025 I: pbuilder-time-stamp: 1754561528 Thu Aug 7 10:12:09 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Thu Aug 7 10:12:09 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Thu Aug 7 10:12:09 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Aug 7 10:12:09 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-7bnN9l' ==================================================================================== Wed Sep 9 16:35:10 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 libpwizlite unstable /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8 3.0.8-1" as arguments. Wed Sep 9 16:35:10 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-eeWB9ESa" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Sep 9 16:35:10 UTC 2026 I: Downloading source for unstable/libpwizlite=3.0.8-1 Reading package lists... NOTICE: 'libpwizlite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/libpwizlite.git Please use: git clone https://salsa.debian.org/debichem-team/libpwizlite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 843 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (dsc) [2218 B] Get:2 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (tar) [832 kB] Get:3 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (diff) [8624 B] Fetched 843 kB in 0s (18.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libpwizlite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/libpwizlite.git Please use: git clone https://salsa.debian.org/debichem-team/libpwizlite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 843 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (dsc) [2218 B] Get:2 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (tar) [832 kB] Get:3 http://deb.debian.org/debian unstable/main libpwizlite 3.0.8-1 (diff) [8624 B] Fetched 843 kB in 0s (18.2 MB/s) Download complete and in download only mode ============================================================================= Re-Building libpwizlite in unstable on amd64 on ionos15-amd64 now. Date: Wed Sep 9 16:35:10 UTC 2026 Date UTC: Wed Sep 9 16:35:10 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/pbuilderrc_nDnU + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libpwizlite = debian-installer -o libpwizlite = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libpwizlite = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/pbuilderrc_nDnU --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b2 --logfile b2/build.log libpwizlite_3.0.8-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 10 06:35:10 +14 2026 I: pbuilder-time-stamp: 1788971710 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpwizlite_3.0.8-1.dsc] I: copying [./libpwizlite_3.0.8.orig.tar.gz] I: copying [./libpwizlite_3.0.8-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libpwizlite_3.0.8-1.dsc: no acceptable signature found dpkg-source: info: extracting libpwizlite in libpwizlite-3.0.8 dpkg-source: info: unpacking libpwizlite_3.0.8.orig.tar.gz dpkg-source: info: unpacking libpwizlite_3.0.8-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/186467/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 9 16:35 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/186467/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/186467/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=86e8201b7a5d48a28911c6af8aa8935d LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=186467 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/pbuilderrc_nDnU --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b2 --logfile b2/build.log libpwizlite_3.0.8-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/186467/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-docutils{a} python3-minimal{a} python3-roman{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix python3-pil python3-pygments wget 0 packages upgraded, 150 newly installed, 0 to remove and 0 not upgraded. Need to get 93.1 MB of archives. After unpacking 506 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 40 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 60 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 87 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4.2 [234 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4.2 [236 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-4.2 [240 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-4.2 [246 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-4.2 [230 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-4.2 [333 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-4.2 [373 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-4.2 [239 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4.2 [282 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-4.2 [231 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-4.2 [232 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4.2 [297 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 104 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 109 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.2 [270 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-4.2 [277 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 112 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1.1 [116 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-2 [598 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.5.1-1 [2954 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.14.1-2 [510 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-roman all 5.0-1 [10.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Fetched 93.1 MB in 7s (12.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20184 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-4_all.deb ... Unpacking tzdata (2025b-4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21199 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package libproc2-0:amd64. 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Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. 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Preparing to unpack .../020-libarchive13t64_3.7.4-4_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../021-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../022-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../023-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../024-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../025-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../026-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../027-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../028-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../029-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../030-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../031-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../032-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../033-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../034-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../035-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../036-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../037-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../038-libgnutls30t64_3.8.9-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../039-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../040-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../041-libcurl4t64_8.14.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.14.1-2) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../042-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 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Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-4.2) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-4.2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-4) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-4.2) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-4.2) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-2) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libarchive13t64:amd64 (3.7.4-4) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libicu-dev:amd64 (76.1-4) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-4.2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1) ... Setting up python3.13 (3.13.5-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.5-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up python3-roman (5.0-1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up libcurl4t64:amd64 (8.14.1-2) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... Setting up debhelper (13.24.2) ... Setting up dh-exec (0.30) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up cmake (3.31.6-2) ... Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-openssl-dev:amd64 (8.14.1-2) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/186467/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/186467/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libpwizlite-3.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpwizlite_3.0.8-1_source.changes dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --build-system=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8' rm -f debian/libpwizlite.3 rm -rf debian/includes rm -rf obj-x86_64-linux-gnu dh_clean make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8' dh_autoreconf_clean -O--build-system=cmake dh_clean -O--build-system=cmake debian/rules binary dh binary --build-system=cmake dh_update_autotools_config -O--build-system=cmake dh_autoreconf -O--build-system=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8' dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/usr" \ -DCMAKE_BUILD_TYPE=release cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release .. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- CMAKE_LIBRARY_ARCHITECTURE: x86_64-linux-gnu -- Set CMAKE_INSTALL_PREFIX to /usr -- Install directory prefix: /usr -- CMAKE_INSTALL_FULL_LIBDIR: /usr/lib/x86_64-linux-gnu -- CMAKE_INSTALL_FULL_INCLUDEDIR: /usr/include Configuring build for project libpwizlite -- Set CMAKE_CXX_STANDARD to 17 (required) -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- CMAKE_SOURCE_DIR: /build/reproducible-path/libpwizlite-3.0.8 UNIX non APPLE environment Please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug ../development -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") CMake Warning (dev) at CMakeStuff/toolchains/unix-toolchain.cmake:12 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:106 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams thread filesystem chrono -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") found components: CXX -- HDF5_CXX_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_CXX_INCLUDE_DIRS: /usr/include/hdf5/serial -- Starting configuration of libpwizlite -- The build toolchain is: Linux  -- CMAKE_CURRENT_BINARY_DIR: /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu -- CMAKE_BUILD_TYPE: release. -- Adding subdirectory src for PROJECT: libpwizlite -- Setting -Wall. -- Boost_LIBRARIES found 1_83 -- Boost_INCLUDES: /usr/include -- Boost_LIB_DIRS: /usr/lib/x86_64-linux-gnu STATUS: Now managing the CPack process -- Configuring done (14.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 sh debian/make-included-headers-hierarchy.sh baseName: arbitrary_positional_facade.hpp dirName: boost/iostreams 'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' baseName: base64.hpp dirName: boost/iostreams/filter 'boost/iostreams/filter/base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' baseName: iterator.hpp dirName: boost/enum 'boost/enum/iterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/iterator.hpp' baseName: base.hpp dirName: boost/enum 'boost/enum/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/base.hpp' baseName: bitfield.hpp dirName: boost/enum 'boost/enum/bitfield.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/bitfield.hpp' baseName: macros.hpp dirName: boost/enum 'boost/enum/macros.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/macros.hpp' baseName: foreach_field.hpp dirName: boost 'boost/foreach_field.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/foreach_field.hpp' baseName: thread_specific_singleton.hpp dirName: boost/utility 'boost/utility/thread_specific_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' baseName: mutexed_singleton.hpp dirName: boost/utility 'boost/utility/mutexed_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' baseName: restricted.hpp dirName: boost/utility/detail 'boost/utility/detail/restricted.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: member_dereference.hpp dirName: boost/utility/detail 'boost/utility/detail/member_dereference.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' baseName: singleton.hpp dirName: boost/utility 'boost/utility/singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/singleton.hpp' baseName: cstdio.hpp dirName: boost/nowide 'boost/nowide/cstdio.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdio.hpp' baseName: cenv.hpp dirName: boost/nowide 'boost/nowide/cenv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cenv.hpp' baseName: iostream.hpp dirName: boost/nowide 'boost/nowide/iostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/iostream.hpp' baseName: filebuf.hpp dirName: boost/nowide 'boost/nowide/filebuf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/filebuf.hpp' baseName: convert.hpp dirName: boost/nowide 'boost/nowide/convert.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/convert.hpp' baseName: args.hpp dirName: boost/nowide 'boost/nowide/args.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: system.hpp dirName: boost/nowide 'boost/nowide/system.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/system.hpp' baseName: stackstring.hpp dirName: boost/nowide 'boost/nowide/stackstring.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/stackstring.hpp' baseName: cstdlib.hpp dirName: boost/nowide 'boost/nowide/cstdlib.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' baseName: fstream.hpp dirName: boost/nowide 'boost/nowide/fstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/fstream.hpp' baseName: windows.hpp dirName: boost/nowide 'boost/nowide/windows.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/windows.hpp' baseName: config.hpp dirName: boost/nowide 'boost/nowide/config.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/config.hpp' baseName: enum.hpp dirName: boost 'boost/enum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum.hpp' baseName: Version.hpp dirName: pwiz 'pwiz/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/Version.hpp' baseName: BinaryIndexStream.hpp dirName: pwiz/data/common 'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' baseName: Index.hpp dirName: pwiz/data/common 'pwiz/data/common/Index.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Index.hpp' baseName: cv.hpp dirName: pwiz/data/common 'pwiz/data/common/cv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/cv.hpp' baseName: obo.hpp dirName: pwiz/data/common 'pwiz/data/common/obo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/obo.hpp' baseName: MemoryIndex.hpp dirName: pwiz/data/common 'pwiz/data/common/MemoryIndex.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' baseName: ParamTypes.hpp dirName: pwiz/data/common 'pwiz/data/common/ParamTypes.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' baseName: diff_std.hpp dirName: pwiz/data/common 'pwiz/data/common/diff_std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' baseName: CVTranslator.hpp dirName: pwiz/data/common 'pwiz/data/common/CVTranslator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' baseName: Unimod.hpp dirName: pwiz/data/common 'pwiz/data/common/Unimod.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' baseName: SpectrumIterator.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' baseName: Serializer_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' baseName: Version.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' baseName: SpectrumList_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' baseName: Connection_mzMLb.hpp dirName: pwiz/data/msdata/mzmlb 'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' baseName: RAMPAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' baseName: MemoryMRUCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' baseName: SpectrumList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' baseName: examples.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/examples.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' baseName: ChromatogramList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' baseName: IO.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/IO.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' baseName: Index_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Index_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' baseName: Reader.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Reader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' baseName: SpectrumList_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' baseName: Diff.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' baseName: SpectrumListCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' baseName: DefaultReaderList.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' baseName: MSData.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' baseName: TextWriter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/TextWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' baseName: MSDataMerger.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' baseName: MSDataFile.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataFile.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' baseName: LegacyAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' baseName: References.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/References.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' baseName: SpectrumListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' baseName: Serializer_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' baseName: MSNumpress.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSNumpress.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' baseName: ChromatogramList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' baseName: FrequencyData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' baseName: FrequencyDataTestData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' baseName: PeakData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/PeakData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' baseName: MinimumPepXML.hpp dirName: pwiz/data/misc 'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' baseName: CalibrationParameters.hpp dirName: pwiz/data/misc 'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' baseName: SampleDatum.hpp dirName: pwiz/data/misc 'pwiz/data/misc/SampleDatum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' baseName: bin1d.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample/utilities 'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' baseName: masscomparefunctors.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' baseName: breakspec.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' baseName: scale.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' baseName: diff.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' baseName: copyif.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' baseName: interpolation.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' baseName: interpolate.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' baseName: constants.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' baseName: preparedata.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' baseName: gauss.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' baseName: filter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' baseName: gaussfilter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' baseName: LinearLeastSquares.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' baseName: erf.hpp dirName: pwiz/utility/math 'pwiz/utility/math/erf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' baseName: LinearSolver.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearSolver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' baseName: OrderedPair.hpp dirName: pwiz/utility/math 'pwiz/utility/math/OrderedPair.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' baseName: MatrixInverse.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatrixInverse.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' baseName: MatchedFilter.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatchedFilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' baseName: qr.hpp dirName: pwiz/utility/math 'pwiz/utility/math/qr.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' baseName: Parabola.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Parabola.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' baseName: HouseholderQR.hpp dirName: pwiz/utility/math 'pwiz/utility/math/HouseholderQR.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' baseName: Stats.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Stats.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' baseName: Types.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Types.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: round.hpp dirName: pwiz/utility/math 'pwiz/utility/math/round.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/round.hpp' baseName: XMLWriter.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' baseName: SAXParser.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' baseName: Singleton.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' baseName: Timer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Timer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' baseName: Environment.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Environment.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' baseName: endian.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/endian.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: IntegerSet.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IntegerSet.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' baseName: Container.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Container.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' baseName: virtual_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/virtual_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' baseName: COMInitializer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/COMInitializer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' baseName: Once.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Once.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' baseName: SHA1.h dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' baseName: IterationListener.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IterationListener.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' baseName: Export.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Export.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' baseName: almost_equal.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/almost_equal.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' baseName: MSIHandler.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/MSIHandler.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' baseName: TabReader.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/TabReader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' baseName: Stream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Stream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' baseName: random_access_compressed_ifstream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' baseName: Base64.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' baseName: Std.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: automation_vector.h dirName: pwiz/utility/misc 'pwiz/utility/misc/automation_vector.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' baseName: Image.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Image.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' baseName: optimized_lexical_cast.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' baseName: shared_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/shared_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' baseName: Filesystem.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Filesystem.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' baseName: unit.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/unit.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' baseName: DateTime.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/DateTime.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' baseName: VendorReaderTestHarness.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' baseName: String.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/String.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' baseName: Exception.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Exception.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' baseName: BinaryData.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/BinaryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' baseName: mru_list.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/mru_list.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' baseName: IsotopeCalculator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' baseName: MzMobilityWindow.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' baseName: IsotopeEnvelopeEstimator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' baseName: Ion.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Ion.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' baseName: MZTolerance.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' baseName: Chemistry.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' baseName: IsotopeTable.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' baseName: ChemistryData.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' baseName: SpectrumList_Demux.hpp dirName: pwiz/analysis/spectrum_processing 'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' baseName: DemuxDataProcessingStrings.hpp dirName: pwiz/analysis/demux 'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8' dh_auto_build -O--build-system=cmake cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.8 -B/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/depend make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpwizlite-3.0.8 /build/reproducible-path/libpwizlite-3.0.8/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpwizlite-3.0.8 /build/reproducible-path/libpwizlite-3.0.8/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o [ 2%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp [ 3%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp [ 4%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o [ 6%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o [ 7%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp [ 9%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp [ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o [ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o cd 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-I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB 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src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF 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-I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Version.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 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-DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp [ 24%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost 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cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o 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-DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB 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-I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 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-I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp [ 41%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ 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-I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp [ 43%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Version.cpp [ 45%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o cd 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CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp [ 46%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp [ 47%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp [ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp [ 50%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp [ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK 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/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp [ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp [ 53%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_construct.h:61, from /usr/include/c++/14/bits/stl_tempbuf.h:61, from /usr/include/c++/14/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/c++/14/iostream:41, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here 346 | long long extrapol; | ^~~~~~~~ In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ In file included from /usr/include/c++/14/iostream:41, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here 346 | long long extrapol; | ^~~~~~~~ In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 212 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 54%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 107 | msd.id = msd.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] 133 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] 136 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] 216 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] 219 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] 273 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] 276 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] 296 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] 317 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] 320 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] 353 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 397 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 401 | result.id = result.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] 380 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] 383 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] 410 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] 463 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] 464 | MSData& result, | ~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] 465 | int runIndex, | ~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] 466 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] 488 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] 533 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] 536 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_construct.h:61, from /usr/include/c++/14/bits/stl_tempbuf.h:61, from /usr/include/c++/14/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 166 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 195 | if (bfs::path(sf.location).leaf() == "AcqData" && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 207 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 216 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 222 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 228 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 454 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); | ~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter] 1027 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); | ~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter] 1156 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter] 1237 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter] 1285 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter] 1353 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] 86 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] 87 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] 95 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] 120 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] 165 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] 201 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 107 | msd.id = msd.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] 133 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] 136 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] 216 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] 219 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] 273 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] 276 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] 296 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] 317 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] 320 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] 353 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 397 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 401 | result.id = result.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] 380 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] 383 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] 410 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] 463 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] 464 | MSData& result, | ~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] 465 | int runIndex, | ~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] 466 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] 488 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] 533 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] 536 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1121 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1121 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 59%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] 86 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] 87 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] 95 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] 120 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] 165 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] 201 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] 278 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] 279 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 103 | for (int o=0;o instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here 587 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ [ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 103 | for (int o=0;o + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here 587 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] 85 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] 136 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] 195 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] 267 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] 504 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] 697 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] 698 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] 970 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1359 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] 1360 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] 85 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] 136 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] 195 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] 267 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] 504 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] 697 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] 698 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] 970 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1359 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] 1360 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1693 | for (int i = 1; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1712 | for (int i = 2; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1774 | for (int i = 1; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1793 | for (int i = 2; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter] 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter] 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] 552 | bool useWorkerThreads, bool continueOnError) const | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1693 | for (int i = 1; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1712 | for (int i = 2; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1774 | for (int i = 1; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1793 | for (int i = 2; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter] 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter] 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter] 3333 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter] 3333 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] 278 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] 279 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp [ 74%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp [ 75%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 164 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 166 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 172 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 178 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 184 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 190 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 195 | if (bfs::path(sf.location).leaf() == "AcqData" && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 207 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 216 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 222 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 228 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 454 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); | ~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter] 1027 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); | ~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter] 1156 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter] 1237 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter] 1285 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter] 1353 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please | ~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ [ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here 131 | size_t byteCount; | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here 131 | size_t byteCount; | ^~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp [ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp [ 91%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined 54 | #pragma GCC warning "WIN32 is NOT defined" | ^~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp [ 95%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 96%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] 337 | mru_list taskMRU_; | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] 334 | bool continueOnError_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) | ^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined 54 | #pragma GCC warning "WIN32 is NOT defined" | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] 337 | mru_list taskMRU_; | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] 334 | bool continueOnError_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) | ^~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here 499 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 58 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 72 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here 500 | PWIZ_API_DECL template class BinaryData; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 313 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 314 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 315 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 316 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/include/boost/algorithm/string/iter_find.hpp:27, from /usr/include/boost/algorithm/string/split.hpp:16, from /usr/include/boost/algorithm/string.hpp:23, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/include/boost/algorithm/string/iter_find.hpp:27, from /usr/include/boost/algorithm/string/split.hpp:16, from /usr/include/boost/algorithm/string.hpp:23, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.hpp:31, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter 'filepath' [-Wunused-parameter] 350 | force_close_handles_to_filepath(const std::string &filepath, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 351 | bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 686 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 710 | bfs::copy_directory(from, to, ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 764 | bfs::copy_directory(from, to, *ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 766 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter 'path' [-Wunused-parameter] 967 | check_path_length(const string &path) | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter 'filepath' [-Wunused-parameter] 350 | force_close_handles_to_filepath(const std::string &filepath, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 351 | bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 686 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 710 | bfs::copy_directory(from, to, ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 764 | bfs::copy_directory(from, to, *ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 766 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter 'path' [-Wunused-parameter] 967 | check_path_length(const string &path) | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds=] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here 501 | bool inCDATA; | ^~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds=] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here 501 | bool inCDATA; | ^~~~~~~ [ 98%] Linking CXX static library libpwizlite.a cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/pwizlite-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-static.dir/link.txt --verbose=1 /usr/bin/ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o" /usr/bin/ranlib libpwizlite.a make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [ 98%] Built target pwizlite-static [100%] Linking CXX shared library libpwizlite.so cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pwizlite-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.8 "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o" -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/x86_64-linux-gnu/libz.so -Wl,--no-as-needed /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so -Wl,--as-needed /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.8 libpwizlite.so.3 libpwizlite.so make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [100%] Built target pwizlite-shared make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' dh_auto_test -O--build-system=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--build-system=cmake dh_prep -O--build-system=cmake dh_auto_install -O--build-system=cmake cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libpwizlite-3.0.8/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.8 -B/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "release" -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pwizlite/FindPwizLite.cmake -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libpwizlite.pc -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8" to "" -- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/x86_64-linux-gnu/libpwizlite.a make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' dh_install -O--build-system=cmake dh_installdocs -O--build-system=cmake dh_installchangelogs -O--build-system=cmake dh_installman -O--build-system=cmake dh_installsystemduser -O--build-system=cmake dh_lintian -O--build-system=cmake dh_perl -O--build-system=cmake dh_link -O--build-system=cmake dh_strip_nondeterminism -O--build-system=cmake dh_compress -O--build-system=cmake dh_fixperms -O--build-system=cmake dh_missing -O--build-system=cmake dh_dwz -a -O--build-system=cmake dh_strip -a -O--build-system=cmake dh_makeshlibs -a -O--build-system=cmake dh_shlibdeps -a -O--build-system=cmake dpkg-shlibdeps: warning: symbol H5T_NATIVE_LLONG_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Screate_simple used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pset_deflate used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Dget_create_plist used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5P_CLS_DATASET_CREATE_ID_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_FLOAT_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Fclose used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tset_size used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Fcreate used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pget_chunk used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: 43 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 was not linked against libhdf5_serial_cpp.so.310 (it uses none of the library's symbols) dh_installdeb -O--build-system=cmake dh_gencontrol -O--build-system=cmake dh_md5sums -O--build-system=cmake dh_builddeb -O--build-system=cmake dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.8-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3t64' in '../libpwizlite3t64_3.0.8-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3t64-dbgsym' in '../libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libpwizlite_3.0.8-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libpwizlite_3.0.8-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/186467/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/186467/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/186467 and its subdirectories I: Current time: Thu Sep 10 06:46:23 +14 2026 I: pbuilder-time-stamp: 1788972383 + false + set +x Wed Sep 9 16:46:23 UTC 2026 I: Signing ./b2/libpwizlite_3.0.8-1_amd64.buildinfo as libpwizlite_3.0.8-1_amd64.buildinfo.asc Wed Sep 9 16:46:23 UTC 2026 I: Signed ./b2/libpwizlite_3.0.8-1_amd64.buildinfo as ./b2/libpwizlite_3.0.8-1_amd64.buildinfo.asc Wed Sep 9 16:46:23 UTC 2026 - build #2 for libpwizlite/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Wed Sep 9 16:46:23 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-eeWB9ESa, removing. /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8: total 692 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 10:12 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 10:23 b2 -rw-r--r-- 1 jenkins jenkins 2218 May 16 2024 libpwizlite_3.0.8-1.dsc -rw------- 1 jenkins jenkins 690814 Aug 7 10:12 rbuildlog.qU0rbYP /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b1: total 16492 -rw-r--r-- 1 jenkins jenkins 687174 Aug 7 10:12 build.log -rw-r--r-- 1 jenkins jenkins 1267684 Aug 7 10:12 libpwizlite-dev_3.0.8-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 13075752 Aug 7 10:12 libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 926192 Aug 7 10:12 libpwizlite3t64_3.0.8-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 8624 Aug 7 10:12 libpwizlite_3.0.8-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2218 Aug 7 10:12 libpwizlite_3.0.8-1.dsc -rw-r--r-- 1 jenkins jenkins 9289 Aug 7 10:12 libpwizlite_3.0.8-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 10171 Aug 7 10:12 libpwizlite_3.0.8-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1791 Aug 7 10:12 libpwizlite_3.0.8-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1495 Aug 7 10:12 libpwizlite_3.0.8-1_source.changes -rw-r--r-- 1 jenkins jenkins 832233 Aug 7 10:12 libpwizlite_3.0.8.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b2: total 16460 -rw-r--r-- 1 jenkins jenkins 689127 Aug 7 10:23 build.log -rw-r--r-- 1 jenkins jenkins 1267684 Aug 7 10:23 libpwizlite-dev_3.0.8-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 13075752 Aug 7 10:23 libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 926192 Aug 7 10:23 libpwizlite3t64_3.0.8-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 8624 Aug 7 10:23 libpwizlite_3.0.8-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2218 Aug 7 10:23 libpwizlite_3.0.8-1.dsc -rw-r--r-- 1 jenkins jenkins 9302 Aug 7 10:23 libpwizlite_3.0.8-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 10184 Aug 7 10:23 libpwizlite_3.0.8-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1791 Aug 7 10:23 libpwizlite_3.0.8-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1495 Aug 7 10:23 libpwizlite_3.0.8-1_source.changes -rw-r--r-- 1 jenkins jenkins 832233 Aug 7 10:23 libpwizlite_3.0.8.orig.tar.gz Thu Aug 7 10:23:24 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Thu Aug 7 10:23:32 UTC 2025 I: libpwizlite_3.0.8-1_amd64.changes: Format: 1.8 Date: Thu, 16 May 2024 14:24:07 +0200 Source: libpwizlite Binary: libpwizlite-dev libpwizlite3t64 libpwizlite3t64-dbgsym Architecture: amd64 Version: 3.0.8-1 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libpwizlite-dev - Library to load mzML/mzXML files (dev files) libpwizlite3t64 - Library to load mzML/mzXML files (runtime files) Changes: libpwizlite (3.0.8-1) unstable; urgency=low . * New upstream version with small glitch. * Upload to unstable. Checksums-Sha1: 12552b6e652a079328c0c98e68b8c561cc8f5275 1267684 libpwizlite-dev_3.0.8-1_amd64.deb 2257815c6953c6909a8ab7ab384ca87dffd7f336 13075752 libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb c03fcd4dd464bdf3f8ef3385033c88556652b0d3 926192 libpwizlite3t64_3.0.8-1_amd64.deb 78297f3e772b96f8d933f76aade7ad7f8b51ae1d 9289 libpwizlite_3.0.8-1_amd64.buildinfo Checksums-Sha256: 9f1a57a5cd598bfeb55c45c4fa9fe3d60da5c3a528c87ca24fad0745380abc3a 1267684 libpwizlite-dev_3.0.8-1_amd64.deb 455734e29887a6d13fe403b1af547962d49f9c25bfc7b40bb715cb16e4970ae6 13075752 libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb 7a881440e462c6fdc4a9ddefed3f07f25e554d16c0e921197ce31de78ca539e7 926192 libpwizlite3t64_3.0.8-1_amd64.deb de4241c394d8c1f85c55d6d48d700694f9a660f8e43e05e9e7d8089ce2cece8a 9289 libpwizlite_3.0.8-1_amd64.buildinfo Files: 0dfcf481f174ec35bced0bf11e5d7c64 1267684 libdevel optional libpwizlite-dev_3.0.8-1_amd64.deb 5bd7038ae6b6c20b2d145d9ad2d24e2c 13075752 debug optional libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb 41bd9fae06c2018175dc0d433c826cac 926192 libs optional libpwizlite3t64_3.0.8-1_amd64.deb 7c0e04fac7daa5ca59c429786f1f974e 9289 libs optional libpwizlite_3.0.8-1_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libpwizlite_3.0.8-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libpwizlite_3.0.8-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/libpwizlite_3.0.8-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/libpwizlite_3.0.8-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/libpwizlite_3.0.8-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libpwizlite_3.0.8-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-08-07 10:12:08.857384116 +0000 +++ b2/build.log 2025-08-07 10:23:24.702261904 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Aug 6 22:10:12 -12 2025 -I: pbuilder-time-stamp: 1754561412 +I: Current time: Thu Sep 10 06:35:10 +14 2026 +I: pbuilder-time-stamp: 1788971710 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking libpwizlite_3.0.8-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2579436/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/186467/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 9 16:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/186467/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/186467/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='35923b242ce946daa6fd0bee02af025f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2579436' - PS1='# ' - PS2='> ' + INVOCATION_ID=86e8201b7a5d48a28911c6af8aa8935d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=186467 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/pbuilderrc_a4QG --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b1 --logfile b1/build.log libpwizlite_3.0.8-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/pbuilderrc_nDnU --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b2 --logfile b2/build.log libpwizlite_3.0.8-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2579436/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/186467/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -273,7 +305,7 @@ Get: 148 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-roman all 5.0-1 [10.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] -Fetched 93.1 MB in 3s (30.8 MB/s) +Fetched 93.1 MB in 7s (12.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) @@ -767,8 +799,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Aug 7 10:10:47 UTC 2025. -Universal Time is now: Thu Aug 7 10:10:47 UTC 2025. +Local time is now: Wed Sep 9 16:40:22 UTC 2026. +Universal Time is now: Wed Sep 9 16:40:22 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-4.2) ... @@ -908,7 +940,11 @@ fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/libpwizlite-3.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpwizlite_3.0.8-1_source.changes +I: user script /srv/workspace/pbuilder/186467/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/186467/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libpwizlite-3.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpwizlite_3.0.8-1_source.changes dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.8-1 dpkg-buildpackage: info: source distribution unstable @@ -994,8 +1030,8 @@ -- Boost_INCLUDES: /usr/include -- Boost_LIB_DIRS: /usr/lib/x86_64-linux-gnu STATUS: Now managing the CPack process --- Configuring done (1.6s) --- Generating done (0.0s) +-- Configuring done (14.3s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1007,483 +1043,483 @@ -- Build files have been written to: /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 sh debian/make-included-headers-hierarchy.sh -baseName: convert.hpp -dirName: boost/nowide -'boost/nowide/convert.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/convert.hpp' -baseName: args.hpp -dirName: boost/nowide -'boost/nowide/args.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/args.hpp' -baseName: windows.hpp +baseName: arbitrary_positional_facade.hpp +dirName: boost/iostreams +'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' +baseName: base64.hpp +dirName: boost/iostreams/filter +'boost/iostreams/filter/base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' +baseName: iterator.hpp +dirName: boost/enum +'boost/enum/iterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/iterator.hpp' +baseName: base.hpp +dirName: boost/enum +'boost/enum/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/base.hpp' +baseName: bitfield.hpp +dirName: boost/enum +'boost/enum/bitfield.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/bitfield.hpp' +baseName: macros.hpp +dirName: boost/enum +'boost/enum/macros.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/macros.hpp' +baseName: foreach_field.hpp +dirName: boost +'boost/foreach_field.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/foreach_field.hpp' +baseName: thread_specific_singleton.hpp +dirName: boost/utility +'boost/utility/thread_specific_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' +baseName: mutexed_singleton.hpp +dirName: boost/utility +'boost/utility/mutexed_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' +baseName: singleton_manager.hpp +dirName: boost/utility/detail +'boost/utility/detail/singleton_manager.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' +baseName: restricted.hpp +dirName: boost/utility/detail +'boost/utility/detail/restricted.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' +baseName: member_dereference.hpp +dirName: boost/utility/detail +'boost/utility/detail/member_dereference.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' +baseName: singleton.hpp +dirName: boost/utility +'boost/utility/singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/singleton.hpp' +baseName: cstdio.hpp dirName: boost/nowide -'boost/nowide/windows.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/windows.hpp' -baseName: config.hpp +'boost/nowide/cstdio.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdio.hpp' +baseName: cenv.hpp dirName: boost/nowide -'boost/nowide/config.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/config.hpp' +'boost/nowide/cenv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cenv.hpp' baseName: iostream.hpp dirName: boost/nowide 'boost/nowide/iostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/iostream.hpp' -baseName: cenv.hpp +baseName: filebuf.hpp dirName: boost/nowide -'boost/nowide/cenv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cenv.hpp' -baseName: cstdlib.hpp +'boost/nowide/filebuf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/filebuf.hpp' +baseName: convert.hpp dirName: boost/nowide -'boost/nowide/cstdlib.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' -baseName: cstdio.hpp +'boost/nowide/convert.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/convert.hpp' +baseName: args.hpp dirName: boost/nowide -'boost/nowide/cstdio.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdio.hpp' +'boost/nowide/args.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: system.hpp dirName: boost/nowide 'boost/nowide/system.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/system.hpp' baseName: stackstring.hpp dirName: boost/nowide 'boost/nowide/stackstring.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/stackstring.hpp' -baseName: filebuf.hpp +baseName: cstdlib.hpp dirName: boost/nowide -'boost/nowide/filebuf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/filebuf.hpp' +'boost/nowide/cstdlib.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' baseName: fstream.hpp dirName: boost/nowide 'boost/nowide/fstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/fstream.hpp' -baseName: macros.hpp -dirName: boost/enum -'boost/enum/macros.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/macros.hpp' -baseName: bitfield.hpp -dirName: boost/enum -'boost/enum/bitfield.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/bitfield.hpp' -baseName: base.hpp -dirName: boost/enum -'boost/enum/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/base.hpp' -baseName: iterator.hpp -dirName: boost/enum -'boost/enum/iterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/iterator.hpp' -baseName: singleton.hpp -dirName: boost/utility -'boost/utility/singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/singleton.hpp' -baseName: singleton_manager.hpp -dirName: boost/utility/detail -'boost/utility/detail/singleton_manager.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' -baseName: member_dereference.hpp -dirName: boost/utility/detail -'boost/utility/detail/member_dereference.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' -baseName: restricted.hpp -dirName: boost/utility/detail -'boost/utility/detail/restricted.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' -baseName: thread_specific_singleton.hpp -dirName: boost/utility -'boost/utility/thread_specific_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' -baseName: mutexed_singleton.hpp -dirName: boost/utility -'boost/utility/mutexed_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' +baseName: windows.hpp +dirName: boost/nowide +'boost/nowide/windows.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/windows.hpp' +baseName: config.hpp +dirName: boost/nowide +'boost/nowide/config.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/config.hpp' baseName: enum.hpp dirName: boost 'boost/enum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum.hpp' -baseName: foreach_field.hpp -dirName: boost -'boost/foreach_field.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/foreach_field.hpp' -baseName: base64.hpp -dirName: boost/iostreams/filter -'boost/iostreams/filter/base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' -baseName: arbitrary_positional_facade.hpp -dirName: boost/iostreams -'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' baseName: Version.hpp dirName: pwiz 'pwiz/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/Version.hpp' -baseName: IsotopeCalculator.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' -baseName: Chemistry.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' -baseName: MzMobilityWindow.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' -baseName: ChemistryData.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' -baseName: Ion.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/Ion.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' -baseName: MZTolerance.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' -baseName: IsotopeEnvelopeEstimator.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -baseName: IsotopeTable.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' -baseName: XMLWriter.hpp -dirName: pwiz/utility/minimxml -'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' -baseName: SAXParser.hpp -dirName: pwiz/utility/minimxml -'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' -baseName: Stats.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/Stats.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' -baseName: OrderedPair.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/OrderedPair.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' -baseName: qr.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/qr.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' -baseName: MatrixInverse.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/MatrixInverse.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' -baseName: Types.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/Types.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' -baseName: HouseholderQR.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/HouseholderQR.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' -baseName: LinearLeastSquares.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' -baseName: LinearSolver.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/LinearSolver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' -baseName: erf.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/erf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' -baseName: MatchedFilter.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/MatchedFilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' -baseName: round.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/round.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/round.hpp' -baseName: Parabola.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/Parabola.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' +baseName: BinaryIndexStream.hpp +dirName: pwiz/data/common +'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' +baseName: Index.hpp +dirName: pwiz/data/common +'pwiz/data/common/Index.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Index.hpp' +baseName: cv.hpp +dirName: pwiz/data/common +'pwiz/data/common/cv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/cv.hpp' +baseName: obo.hpp +dirName: pwiz/data/common +'pwiz/data/common/obo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/obo.hpp' +baseName: MemoryIndex.hpp +dirName: pwiz/data/common +'pwiz/data/common/MemoryIndex.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' +baseName: ParamTypes.hpp +dirName: pwiz/data/common +'pwiz/data/common/ParamTypes.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' +baseName: diff_std.hpp +dirName: pwiz/data/common +'pwiz/data/common/diff_std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' +baseName: CVTranslator.hpp +dirName: pwiz/data/common +'pwiz/data/common/CVTranslator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' +baseName: Unimod.hpp +dirName: pwiz/data/common +'pwiz/data/common/Unimod.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' +baseName: SpectrumIterator.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' +baseName: Serializer_MSn.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' +baseName: Version.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' +baseName: Serializer_MGF.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' +baseName: SpectrumList_MGF.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' +baseName: Connection_mzMLb.hpp +dirName: pwiz/data/msdata/mzmlb +'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' +baseName: RAMPAdapter.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' +baseName: ChromatogramListBase.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' +baseName: Serializer_mzXML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' +baseName: BinaryDataEncoder.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' +baseName: MemoryMRUCache.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' +baseName: SpectrumInfo.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' +baseName: SpectrumList_mzML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' +baseName: examples.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/examples.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' +baseName: ChromatogramList_mzML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' +baseName: IO.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/IO.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' +baseName: SpectrumList_BTDX.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' +baseName: Index_mzML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Index_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' +baseName: Reader.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Reader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' +baseName: SpectrumList_mzXML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' +baseName: Diff.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' +baseName: Serializer_mzML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' +baseName: SpectrumListCache.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' +baseName: SpectrumWorkerThreads.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' +baseName: DefaultReaderList.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' +baseName: MSData.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/MSData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' +baseName: TextWriter.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/TextWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' +baseName: MSDataMerger.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' +baseName: SpectrumList_MSn.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' +baseName: MSDataFile.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/MSDataFile.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' +baseName: SHA1OutputObserver.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' +baseName: LegacyAdapter.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' +baseName: SpectrumList_mz5.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' +baseName: References.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/References.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' +baseName: SpectrumListBase.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' +baseName: Serializer_mz5.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' +baseName: MSNumpress.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/MSNumpress.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' +baseName: ChromatogramList_mz5.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' +baseName: SpectrumListWrapper.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' +baseName: FrequencyData.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/FrequencyData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' +baseName: FrequencyDataTestData.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' +baseName: PeakData.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/PeakData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' +baseName: MinimumPepXML.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' +baseName: CalibrationParameters.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' +baseName: SampleDatum.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/SampleDatum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' +baseName: bin1d.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample/utilities +'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' +baseName: masscomparefunctors.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' +baseName: breakspec.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' baseName: scale.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' +baseName: diff.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' +baseName: copyif.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' baseName: interpolation.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' -baseName: copyif.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' -baseName: constants.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' -baseName: diff.hpp +baseName: interpolate.hpp dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' +'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' -baseName: interpolate.hpp +baseName: constants.hpp dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' -baseName: filter.hpp -dirName: pwiz/utility/findmf/base/filter -'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' -baseName: gauss.hpp -dirName: pwiz/utility/findmf/base/filter/utilities -'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' +'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' baseName: preparedata.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' +baseName: gauss.hpp +dirName: pwiz/utility/findmf/base/filter/utilities +'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' +baseName: filter.hpp +dirName: pwiz/utility/findmf/base/filter +'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' baseName: gaussfilter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' -baseName: bin1d.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample/utilities -'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -baseName: breakspec.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -baseName: masscomparefunctors.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -baseName: unit.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/unit.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' -baseName: TabReader.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/TabReader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' -baseName: Stream.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Stream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' -baseName: Environment.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Environment.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' -baseName: Base64.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' +baseName: LinearLeastSquares.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' +baseName: erf.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/erf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' +baseName: LinearSolver.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/LinearSolver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' +baseName: OrderedPair.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/OrderedPair.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' +baseName: MatrixInverse.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/MatrixInverse.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' +baseName: MatchedFilter.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/MatchedFilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' +baseName: qr.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/qr.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' +baseName: Parabola.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Parabola.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' +baseName: HouseholderQR.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/HouseholderQR.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' +baseName: Stats.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Stats.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' +baseName: Types.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Types.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' +baseName: round.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/round.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/round.hpp' +baseName: XMLWriter.hpp +dirName: pwiz/utility/minimxml +'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' +baseName: SAXParser.hpp +dirName: pwiz/utility/minimxml +'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' baseName: Singleton.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' -baseName: optimized_lexical_cast.hpp +baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' -baseName: Std.hpp +'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' +baseName: Timer.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' -baseName: Image.hpp +'pwiz/utility/misc/Timer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' +baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Image.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' -baseName: MSIHandler.hpp +'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' +baseName: Environment.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/MSIHandler.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' -baseName: Filesystem.hpp +'pwiz/utility/misc/Environment.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' +baseName: endian.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Filesystem.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' +'pwiz/utility/misc/endian.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: IntegerSet.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IntegerSet.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' baseName: Container.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Container.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' -baseName: CharIndexedVector.hpp +baseName: virtual_map.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' -baseName: VendorReaderTestHarness.hpp +'pwiz/utility/misc/virtual_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' +baseName: COMInitializer.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' +'pwiz/utility/misc/COMInitializer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' baseName: Once.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Once.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' +baseName: SHA1.h +dirName: pwiz/utility/misc +'pwiz/utility/misc/SHA1.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' baseName: IterationListener.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IterationListener.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' -baseName: Exception.hpp +baseName: Export.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Exception.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' -baseName: BinaryData.hpp +'pwiz/utility/misc/Export.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' +baseName: almost_equal.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/BinaryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' -baseName: SHA1Calculator.hpp +'pwiz/utility/misc/almost_equal.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' +baseName: MSIHandler.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' -baseName: Timer.hpp +'pwiz/utility/misc/MSIHandler.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' +baseName: TabReader.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Timer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' -baseName: virtual_map.hpp +'pwiz/utility/misc/TabReader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' +baseName: Stream.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/virtual_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' -baseName: shared_map.hpp +'pwiz/utility/misc/Stream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' +baseName: random_access_compressed_ifstream.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/shared_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' -baseName: SHA1.h +'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' +baseName: Base64.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/SHA1.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' +'pwiz/utility/misc/Base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' -baseName: random_access_compressed_ifstream.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' -baseName: String.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/String.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' -baseName: endian.hpp +baseName: Std.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/endian.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' +'pwiz/utility/misc/Std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: automation_vector.h dirName: pwiz/utility/misc 'pwiz/utility/misc/automation_vector.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' -baseName: cpp_cli_utilities.hpp +baseName: Image.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' -baseName: ClickwrapPrompter.hpp +'pwiz/utility/misc/Image.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' +baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' -baseName: mru_list.hpp +'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' +baseName: optimized_lexical_cast.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/mru_list.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' -baseName: almost_equal.hpp +'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' +baseName: shared_map.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/almost_equal.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' -baseName: Export.hpp +'pwiz/utility/misc/shared_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' +baseName: Filesystem.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Export.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' -baseName: COMInitializer.hpp +'pwiz/utility/misc/Filesystem.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' +baseName: unit.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/COMInitializer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' +'pwiz/utility/misc/unit.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' +baseName: cpp_cli_utilities.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' baseName: DateTime.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/DateTime.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' -baseName: Version.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' -baseName: Serializer_MGF.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' -baseName: SpectrumWorkerThreads.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' -baseName: Connection_mzMLb.hpp -dirName: pwiz/data/msdata/mzmlb -'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -baseName: SpectrumListCache.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' -baseName: SpectrumListBase.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' -baseName: Serializer_mzXML.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' -baseName: Diff.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' -baseName: RAMPAdapter.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' -baseName: ChromatogramList_mz5.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' -baseName: SpectrumList_MSn.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' -baseName: MSDataFile.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/MSDataFile.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' -baseName: MSData.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/MSData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' -baseName: SpectrumList_MGF.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' -baseName: ChromatogramListBase.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' -baseName: References.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/References.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' -baseName: SpectrumInfo.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' -baseName: MSNumpress.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/MSNumpress.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' -baseName: LegacyAdapter.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' -baseName: Reader.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Reader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' -baseName: DefaultReaderList.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' -baseName: Serializer_mz5.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' -baseName: SpectrumList_mzXML.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' -baseName: SpectrumListWrapper.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' -baseName: IO.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/IO.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' -baseName: SpectrumList_BTDX.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' -baseName: Serializer_MSn.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' -baseName: SpectrumList_mz5.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' -baseName: SpectrumIterator.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' -baseName: Serializer_mzML.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' -baseName: SpectrumList_mzML.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' -baseName: examples.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/examples.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' -baseName: SHA1OutputObserver.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' -baseName: MemoryMRUCache.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' -baseName: Index_mzML.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Index_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' -baseName: MSDataMerger.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' -baseName: BinaryDataEncoder.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' -baseName: ChromatogramList_mzML.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' -baseName: TextWriter.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/TextWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' -baseName: Index.hpp -dirName: pwiz/data/common -'pwiz/data/common/Index.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Index.hpp' -baseName: MemoryIndex.hpp -dirName: pwiz/data/common -'pwiz/data/common/MemoryIndex.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' -baseName: BinaryIndexStream.hpp -dirName: pwiz/data/common -'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' -baseName: obo.hpp -dirName: pwiz/data/common -'pwiz/data/common/obo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/obo.hpp' -baseName: diff_std.hpp -dirName: pwiz/data/common -'pwiz/data/common/diff_std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' -baseName: Unimod.hpp -dirName: pwiz/data/common -'pwiz/data/common/Unimod.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' -baseName: cv.hpp -dirName: pwiz/data/common -'pwiz/data/common/cv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/cv.hpp' -baseName: ParamTypes.hpp -dirName: pwiz/data/common -'pwiz/data/common/ParamTypes.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' -baseName: CVTranslator.hpp -dirName: pwiz/data/common -'pwiz/data/common/CVTranslator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' -baseName: FrequencyData.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/FrequencyData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' -baseName: MinimumPepXML.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' -baseName: PeakData.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/PeakData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' -baseName: FrequencyDataTestData.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' -baseName: SampleDatum.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/SampleDatum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' -baseName: CalibrationParameters.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' -baseName: DemuxDataProcessingStrings.hpp -dirName: pwiz/analysis/demux -'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' +baseName: VendorReaderTestHarness.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' +baseName: String.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/String.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' +baseName: Exception.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/Exception.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' +baseName: BinaryData.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/BinaryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' +baseName: mru_list.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/mru_list.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' +baseName: IsotopeCalculator.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' +baseName: MzMobilityWindow.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' +baseName: IsotopeEnvelopeEstimator.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' +baseName: Ion.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/Ion.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' +baseName: MZTolerance.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' +baseName: Chemistry.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' +baseName: IsotopeTable.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' +baseName: ChemistryData.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' baseName: SpectrumList_Demux.hpp dirName: pwiz/analysis/spectrum_processing 'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' +baseName: DemuxDataProcessingStrings.hpp +dirName: pwiz/analysis/demux +'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8' dh_auto_build -O--build-system=cmake - cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.8 -B/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1501,86 +1537,94 @@ make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' -[ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o +[ 1%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o +[ 2%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp +[ 3%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp +[ 4%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o +[ 6%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp [ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -[ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -[ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -[ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -[ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -[ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -[ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -[ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -[ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -[ 13%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -[ 14%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -[ 15%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -[ 18%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -[ 18%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -[ 19%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -[ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -[ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -[ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -[ 24%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -[ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -[ 26%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -[ 28%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp +[ 7%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o cd 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CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp -[ 30%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -[ 31%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -[ 31%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -[ 32%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -cd 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/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp -[ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp +[ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp +[ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp +[ 53%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { @@ -1589,57 +1633,8 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ -[ 50%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp -[ 51%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp -In file included from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: -In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', - inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: -/usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] - 212 | { return _M_insert(__n); } - | ~~~~~~~~~^~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here - 346 | long long extrapol; - | ^~~~~~~~ -In file included from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: -In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', - inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: -/usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] - 212 | { return _M_insert(__n); } - | ~~~~~~~~~^~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here - 346 | long long extrapol; - | ^~~~~~~~ -In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', - inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: -/usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] - 212 | { return _M_insert(__n); } - | ~~~~~~~~~^~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here - 347 | long long y; - | ^ -In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', - inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: -/usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] - 212 | { return _M_insert(__n); } - | ~~~~~~~~~^~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here - 347 | long long y; - | ^ -[ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp -[ 53%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1674,8 +1669,8 @@ 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1692,13 +1687,8 @@ 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1708,6 +1698,18 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: @@ -1717,19 +1719,12 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1746,8 +1741,8 @@ 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1763,15 +1758,76 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_construct.h:61, + from /usr/include/c++/14/bits/stl_tempbuf.h:61, + from /usr/include/c++/14/memory:66, + from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, + from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1787,9 +1843,49 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: +In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', + inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: +/usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] + 212 | { return _M_insert(__n); } + | ~~~~~~~~~^~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here + 346 | long long extrapol; + | ^~~~~~~~ +In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', + inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: +/usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] + 212 | { return _M_insert(__n); } + | ~~~~~~~~~^~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here + 347 | long long y; + | ^ +In file included from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27: +In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', + inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33: +/usr/include/c++/14/ostream:212:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] + 212 | { return _M_insert(__n); } + | ~~~~~~~~~^~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here + 346 | long long extrapol; + | ^~~~~~~~ +In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', + inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26: +/usr/include/c++/14/ostream:212:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] + 212 | { return _M_insert(__n); } + | ~~~~~~~~~^~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here + 347 | long long y; + | ^ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1805,9 +1901,56 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +[ 54%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1823,14 +1966,65 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1847,8 +2041,8 @@ 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1864,8 +2058,9 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1882,8 +2077,9 @@ 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1899,8 +2095,26 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1916,20 +2130,72 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_construct.h:61, - from /usr/include/c++/14/bits/stl_tempbuf.h:61, - from /usr/include/c++/14/memory:66, - from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, - from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: +In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, + from /usr/include/c++/14/string:47, + from /usr/include/c++/14/stdexcept:39, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -1939,10 +2205,235 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] + 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); + | ~~~~~~^~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' + 64 | #define BFS_STRING(p) (p).string() + | ^ +In file included from /usr/include/boost/filesystem/operations.hpp:20, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] + 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); + | ~~~~~~~~~~~~~^~ +/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here + 1129 | path branch_path() const { return parent_path(); } + | ^~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 107 | msd.id = msd.run.id = bfs::basename(filename); + | ~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] + 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] + 133 | const std::string& head, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] + 136 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] + 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] + 216 | const std::string& head, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] + 219 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] + 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); + | ~~~~~~~~~~~~~~^~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here + 29 | inline std::string extension(const path& p) + | ^~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] + 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] + 273 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] + 276 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] + 296 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] + 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] + 317 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] + 320 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] + 353 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] + 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 397 | sourceFile->name = BFS_STRING(p.leaf()); + | ~~~~~~^~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' + 64 | #define BFS_STRING(p) (p).string() + | ^ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] + 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); + | ~~~~~~~~~~~~~^~ +/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here + 1129 | path branch_path() const { return parent_path(); } + | ^~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 401 | result.id = result.run.id = bfs::basename(filename); + | ~~~~~~~~~~~~~^~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] + 380 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] + 383 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] + 410 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] + 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] + 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] + 463 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] + 464 | MSData& result, + | ~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] + 465 | int runIndex, + | ~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] + 466 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] + 488 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] + 533 | const std::string& head, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] + 536 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1959,7 +2450,8 @@ 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1975,9 +2467,28 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1994,15 +2505,19 @@ 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +In file included from /usr/include/c++/14/bits/stl_construct.h:61, + from /usr/include/c++/14/bits/stl_tempbuf.h:61, + from /usr/include/c++/14/memory:66, + from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, + from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -2012,17 +2527,17 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -2032,28 +2547,38 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -2070,9 +2595,7 @@ 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -2104,66 +2627,271 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: /usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] + 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); + | ~~~~~~~~~~~~~~^~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: +/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here + 29 | inline std::string extension(const path& p) + | ^~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] + 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here + 29 | inline std::string extension(const path& p) + | ^~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 157 | return bfs::basename(sf.name); + | ~~~~~~~~~~~~~^~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 164 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/boost/filesystem/operations.hpp:20, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 164 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 166 | return bfs::basename(sf.name); + | ~~~~~~~~~~~~~^~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 172 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 172 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 178 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 178 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 184 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 184 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 190 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 190 | return bfs::basename(bfs::path(sf.location).leaf()); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 195 | if (bfs::path(sf.location).leaf() == "AcqData" && + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 207 | return bfs::basename(sf.name); + | ~~~~~~~~~~~~~^~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 216 | return bfs::basename(sf.name); + | ~~~~~~~~~~~~~^~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 222 | return bfs::basename(sf.name); + | ~~~~~~~~~~~~~^~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 228 | return bfs::basename(sf.name); + | ~~~~~~~~~~~~~^~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] + 454 | const SpectrumListPtr spectrumListPtr, + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, @@ -2183,18 +2911,74 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] + 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); + | ~~~~~~~~~~~~~~^~~~~~ +/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here + 29 | inline std::string extension(const path& p) + | ^~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter] + 1027 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); + | ~~~~~~~~~~~~~~~~~~~^~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' + 64 | #define BFS_STRING(p) (p).string() + | ^ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' + 64 | #define BFS_STRING(p) (p).string() + | ^ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter] + 1156 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter] + 1237 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter] + 1285 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter] + 1353 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 57%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] + 40 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] + 88 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] + 124 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -2207,57 +2991,68 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] 40 | const BaseDiffConfig& config) @@ -2270,10 +3065,47 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, + from /usr/include/c++/14/string:47, + from /usr/include/c++/14/stdexcept:39, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -2282,10 +3114,6 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -2294,41 +3122,93 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:27, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:25: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -2353,11 +3233,6 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ @@ -2365,15 +3240,20 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, @@ -2398,6 +3278,25 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -2406,10 +3305,37 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 86 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] + 87 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] + 95 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] + 120 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] + 165 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] + 201 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -2418,15 +3344,33 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] + 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -2435,6 +3379,19 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2470,61 +3427,18 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] - 40 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] - 88 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] - 124 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: -/usr/include/boost/iterator.hpp: At global scope: +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -2536,25 +3450,177 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); + | ~~~~~~^~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' + 64 | #define BFS_STRING(p) (p).string() + | ^ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +In file included from /usr/include/boost/filesystem/operations.hpp:20, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] + 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); + | ~~~~~~~~~~~~~^~ +/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here + 1129 | path branch_path() const { return parent_path(); } + | ^~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 107 | msd.id = msd.run.id = bfs::basename(filename); + | ~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] + 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] + 133 | const std::string& head, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] + 136 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] + 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] + 216 | const std::string& head, + | ~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] + 219 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] + 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); + | ~~~~~~~~~~~~~~^~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here + 29 | inline std::string extension(const path& p) + | ^~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] + 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] + 273 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] + 276 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] + 296 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] + 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] + 317 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] + 320 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] + 353 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] + 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] + 397 | sourceFile->name = BFS_STRING(p.leaf()); + | ~~~~~~^~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' + 64 | #define BFS_STRING(p) (p).string() + | ^ +/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here + 1127 | path leaf() const { return filename(); } + | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] + 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); + | ~~~~~~~~~~~~~^~ +/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here + 1129 | path branch_path() const { return parent_path(); } + | ^~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 401 | result.id = result.run.id = bfs::basename(filename); + | ~~~~~~~~~~~~~^~~~~~~~~~ +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] + 380 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] + 383 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] + 410 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] + 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] + 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] + 463 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] + 464 | MSData& result, + | ~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] + 465 | int runIndex, + | ~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] + 466 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] + 488 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -2563,30 +3629,76 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] + 533 | const std::string& head, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] + 536 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: +[ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -2621,27 +3733,7 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -2676,37 +3768,18 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_construct.h:61, - from /usr/include/c++/14/bits/stl_tempbuf.h:61, - from /usr/include/c++/14/memory:66, - from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, - from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -2715,6 +3788,10 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -2729,19 +3806,10 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] + 1121 | if ((result >= 0 && result < size()) || s == 0) + | ~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || @@ -2762,41 +3830,19 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -2805,36 +3851,27 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] + 552 | bool useWorkerThreads, bool continueOnError) const + | ~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] + 552 | bool useWorkerThreads, bool continueOnError) const + | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2870,47 +3907,28 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2946,11 +3964,41 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] + 1121 | if ((result >= 0 && result < size()) || s == 0) + | ~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ @@ -2981,72 +4029,18 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] - 1121 | if ((result >= 0 && result < size()) || s == 0) - | ~~~~~~~^~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +[ 59%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -3055,15 +4049,12 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26: +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -3098,28 +4089,14 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] 86 | const Attributes& attributes, @@ -3143,155 +4120,118 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] 201 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 86 | const Attributes& attributes, +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 278 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] - 87 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] + 279 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] - 95 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] - 120 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] + 84 | } catch (index_not_found e){ + | ^ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] + 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] - 165 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] + 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] - 201 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] + 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] - 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] - 1121 | if ((result >= 0 && result < size()) || s == 0) - | ~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] + 282 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] + 302 | virtual Status endElement(const std::string& name, stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] + 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] + 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] + 736 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] + 754 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 778 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] + 779 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] + 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] + 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] + 885 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] + 103 | for (int o=0;o instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, - from /usr/include/c++/14/string:47, - from /usr/include/c++/14/stdexcept:39, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ +[ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] + 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) + | ^~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here + 587 | case MS_Bruker_Agilent_YEP_nativeID_format: + | ^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:27, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:25: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -3307,10 +4247,7 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -3345,6 +4282,24 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~ +[ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -3353,51 +4308,14 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] + 103 | for (int o=0;o + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -3406,22 +4324,15 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, - from /usr/include/c++/14/string:47, - from /usr/include/c++/14/stdexcept:39, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -3431,6 +4342,8 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 63%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -3439,14 +4352,13 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] + 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) + | ^~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here + 587 | case MS_Bruker_Agilent_YEP_nativeID_format: + | ^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] 85 | stream_offset position) @@ -3470,13 +4382,6 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] 697 | const Attributes& attributes, @@ -3492,12 +4397,8 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1359 | const Attributes& attributes, @@ -3521,30 +4422,14 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] 267 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 1693 | for (int i = 1; i < float_data.size(); i++) - | ~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 1712 | for (int i = 2; i < float_data.size(); i++) - | ~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 1774 | for (int i = 1; i < double_data.size(); i++) - | ~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 1793 | for (int i = 2; i < double_data.size(); i++) - | ~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter] - 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) - | ~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter] - 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) - | ~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] 504 | const Attributes& attributes, @@ -3552,10 +4437,8 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] 505 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ +[ 65%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] 697 | const Attributes& attributes, @@ -3567,14 +4450,17 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] 970 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ +[ 67%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] 1083 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ +[ 68%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1359 | const Attributes& attributes, @@ -3582,80 +4468,11 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] 1360 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); - | ~~~~~~^~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' - 64 | #define BFS_STRING(p) (p).string() - | ^ -In file included from /usr/include/boost/filesystem/operations.hpp:20, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] - 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); - | ~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here - 1129 | path branch_path() const { return parent_path(); } - | ^~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 107 | msd.id = msd.run.id = bfs::basename(filename); - | ~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] - 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] - 133 | const std::string& head, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] - 136 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] - 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] - 216 | const std::string& head, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] - 219 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] - 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); - | ~~~~~~~~~~~~~~^~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here - 29 | inline std::string extension(const path& p) - | ^~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] - 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1693 | for (int i = 1; i < float_data.size(); i++) @@ -3663,175 +4480,58 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1712 | for (int i = 2; i < float_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] - 273 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] - 276 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] - 296 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] - 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1774 | for (int i = 1; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1793 | for (int i = 2; i < double_data.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] - 317 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] - 320 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] - 353 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter] 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] - 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter] 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) | ~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 397 | sourceFile->name = BFS_STRING(p.leaf()); - | ~~~~~~^~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' - 64 | #define BFS_STRING(p) (p).string() - | ^ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] - 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); - | ~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here - 1129 | path branch_path() const { return parent_path(); } - | ^~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 401 | result.id = result.run.id = bfs::basename(filename); - | ~~~~~~~~~~~~~^~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] - 380 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] - 383 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] - 410 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] - 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] - 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] - 463 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] - 464 | MSData& result, - | ~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] - 465 | int runIndex, - | ~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] - 466 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] - 488 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] - 2955 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] - 3085 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] - 533 | const std::string& head, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] - 536 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter] - 3333 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] - 2955 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); - | ~~~~~~^~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' - 64 | #define BFS_STRING(p) (p).string() - | ^ -In file included from /usr/include/boost/filesystem/operations.hpp:20, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] - 66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); - | ~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here - 1129 | path branch_path() const { return parent_path(); } - | ^~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] - 3085 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] + 552 | bool useWorkerThreads, bool continueOnError) const + | ~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] + 552 | bool useWorkerThreads, bool continueOnError) const + | ~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] + 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 107 | msd.id = msd.run.id = bfs::basename(filename); - | ~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37: -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] - 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] + 162 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 1693 | for (int i = 1; i < float_data.size(); i++) + | ~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 1712 | for (int i = 2; i < float_data.size(); i++) + | ~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 1774 | for (int i = 1; i < double_data.size(); i++) + | ~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 1793 | for (int i = 2; i < double_data.size(); i++) + | ~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter] + 1627 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) + | ~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string; size_t = long unsigned int]': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter] + 1820 | void writeMzMLbExtra(stream* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig) + | ~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] + 356 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3867,127 +4567,24 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] - 133 | const std::string& head, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] - 136 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] - 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] - 216 | const std::string& head, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] - 219 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] - 269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); - | ~~~~~~~~~~~~~~^~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here - 29 | inline std::string extension(const path& p) - | ^~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] - 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] - 273 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] - 276 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] - 296 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] - 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] - 317 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] - 320 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] - 353 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] - 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 397 | sourceFile->name = BFS_STRING(p.leaf()); - | ~~~~~~^~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' - 64 | #define BFS_STRING(p) (p).string() - | ^ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] - 398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); - | ~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here - 1129 | path branch_path() const { return parent_path(); } - | ^~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 401 | result.id = result.run.id = bfs::basename(filename); - | ~~~~~~~~~~~~~^~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter] - 3333 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] - 380 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] - 383 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] - 410 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] - 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] - 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] - 463 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] - 464 | MSData& result, - | ~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] - 465 | int runIndex, - | ~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] - 466 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] - 488 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -3996,130 +4593,41 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] - 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) - | ^~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here - 587 | case MS_Bruker_Agilent_YEP_nativeID_format: - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] - 533 | const std::string& head, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] - 536 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter] - 80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] - 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) - | ^~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here - 587 | case MS_Bruker_Agilent_YEP_nativeID_format: - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] - 84 | } catch (index_not_found e){ - | ^ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] - 128 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] - 212 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] - 239 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 69%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] + 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] - 282 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] - 302 | virtual Status endElement(const std::string& name, stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 701 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] - 702 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] + 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] - 710 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] - 736 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter] + 3333 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] - 754 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 778 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] - 779 | stream_offset position) +[ 70%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter] + 2955 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] - 796 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] - 797 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] - 885 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] - 121 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter] + 3085 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] - 162 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] - 356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] - 103 | for (int o=0;o >, const pwiz::msdata::MSData&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] 128 | stream_offset position) @@ -4200,8 +4712,13 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 278 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] + 279 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] 701 | const Attributes& attributes, @@ -4239,42 +4756,6 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 59%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 552 | bool useWorkerThreads, bool continueOnError) const - | ~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] - 552 | bool useWorkerThreads, bool continueOnError) const - | ~~~~~^~~~~~~~~~~~~~~ -[ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -[ 63%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp -[ 64%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp -[ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp -[ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp -[ 68%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] - 103 | for (int o=0;o instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -4374,9 +4782,56 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:29: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 73%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp +[ 74%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp +[ 75%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -4392,11 +4847,20 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 73%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp +[ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -4412,12 +4876,10 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 74%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -4433,46 +4895,8 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 75%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please - | ~~~~~~~^~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ +[ 78%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, @@ -4480,57 +4904,18 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please - | ~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -4539,138 +4924,14 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27: -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -4679,6 +4940,8 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -4687,83 +4950,14 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -[ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 278 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] - 279 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] - 305 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here - 131 | size_t byteCount; - | ^~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] - 305 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here - 132 | const void* byteBuffer; - | ^~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 78%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please + | ~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -[ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); @@ -4859,6 +5053,10 @@ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ @@ -4899,49 +5097,6 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 454 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); @@ -4953,21 +5108,6 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter] 1027 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31: -/usr/include/boost/iterator.hpp: At global scope: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); @@ -5003,137 +5143,16 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter] 1353 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] - 149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); - | ~~~~~~~~~~~~~~^~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: -/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here - 29 | inline std::string extension(const path& p) - | ^~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] - 150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here - 29 | inline std::string extension(const path& p) - | ^~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 157 | return bfs::basename(sf.name); - | ~~~~~~~~~~~~~^~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 164 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/boost/filesystem/operations.hpp:20, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36: -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 164 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 166 | return bfs::basename(sf.name); - | ~~~~~~~~~~~~~^~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 172 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 172 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 178 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 178 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 184 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 184 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 190 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 190 | return bfs::basename(bfs::path(sf.location).leaf()); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 195 | if (bfs::path(sf.location).leaf() == "AcqData" && - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 207 | return bfs::basename(sf.name); - | ~~~~~~~~~~~~~^~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 216 | return bfs::basename(sf.name); - | ~~~~~~~~~~~~~^~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 222 | return bfs::basename(sf.name); - | ~~~~~~~~~~~~~^~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] - 228 | return bfs::basename(sf.name); - | ~~~~~~~~~~~~~^~~~~~~~~ -/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here - 35 | inline std::string basename(const path& p) - | ^~~~~~~~ +[ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, @@ -5142,113 +5161,61 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] - 454 | const SpectrumListPtr spectrumListPtr, - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] - 878 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); - | ~~~~~~~~~~~~~~^~~~~~ -/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here - 29 | inline std::string extension(const path& p) - | ^~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 552 | bool useWorkerThreads, bool continueOnError) const - | ~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] - 552 | bool useWorkerThreads, bool continueOnError) const - | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter] - 1027 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); - | ~~~~~~~~~~~~~~~~~~~^~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' - 64 | #define BFS_STRING(p) (p).string() - | ^ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations] - 1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING' - 64 | #define BFS_STRING(p) (p).string() - | ^ -/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here - 1127 | path leaf() const { return filename(); } - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter] - 1156 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter] - 1237 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter] - 1285 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter] - 1353 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ +[ 81%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] - 305 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here - 131 | size_t byteCount; - | ^~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] - 305 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here - 132 | const void* byteBuffer; - | ^~~~~~~~~~ -[ 81%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please + | ~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -5291,14 +5258,30 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/iterator.hpp: At global scope: +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] + 73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27: +/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here + 35 | inline std::string basename(const path& p) + | ^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: @@ -5319,22 +5302,8 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp -[ 84%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -[ 85%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp -[ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp +[ 84%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, @@ -5343,28 +5312,8 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, - from /usr/include/c++/14/string:47, - from /usr/include/c++/14/stdexcept:39, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ +[ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -5373,47 +5322,23 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -[ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp -[ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] - 337 | mru_list taskMRU_; - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] - 334 | bool continueOnError_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] - 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) - | ^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 91%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 92%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp +[ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] + 305 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here + 131 | size_t byteCount; + | ^~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] + 305 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here + 132 | const void* byteBuffer; + | ^~~~~~~~~~ +[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, @@ -5422,6 +5347,25 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] + 305 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here + 131 | size_t byteCount; + | ^~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] + 305 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here + 132 | const void* byteBuffer; + | ^~~~~~~~~~ +[ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp +[ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp +[ 91%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29, @@ -5433,10 +5377,77 @@ from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 92%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31: +/usr/include/boost/iterator.hpp: At global scope: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined + 54 | #pragma GCC warning "WIN32 is NOT defined" + | ^~~~~~~~~~~~~~~~~~~~~~ +[ 93%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp +[ 95%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, @@ -5445,20 +5456,8 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] - 337 | mru_list taskMRU_; - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] - 334 | bool continueOnError_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] - 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) - | ^~~~ -[ 95%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp +[ 96%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; @@ -5627,39 +5626,58 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ +[ 97%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] + 337 | mru_list taskMRU_; + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] + 334 | bool continueOnError_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] + 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) + | ^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27: -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp -[ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -I/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined - 54 | #pragma GCC warning "WIN32 is NOT defined" - | ^~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, + from /usr/include/c++/14/string:47, + from /usr/include/c++/14/stdexcept:39, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24: /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator @@ -5676,6 +5694,9 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined + 54 | #pragma GCC warning "WIN32 is NOT defined" + | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, @@ -5684,17 +5705,40 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] + 337 | mru_list taskMRU_; + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] + 334 | bool continueOnError_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] + 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) + | ^~~~ +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined - 54 | #pragma GCC warning "WIN32 is NOT defined" - | ^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here 498 | PWIZ_API_DECL template class BinaryData; @@ -5863,54 +5907,22 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] - 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] - 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26: +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] - 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': -/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] - 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, @@ -5925,6 +5937,22 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/iostreams/device/file_descriptor.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] + 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] + 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, @@ -5939,6 +5967,14 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] + 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': +/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] + 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter 'filepath' [-Wunused-parameter] 350 | force_close_handles_to_filepath(const std::string &filepath, @@ -6037,19 +6073,19 @@ /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here 501 | bool inCDATA; | ^~~~~~~ -[ 98%] Linking CXX shared library libpwizlite.so -cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 -[100%] Linking CXX static library libpwizlite.a +[ 98%] Linking CXX static library libpwizlite.a cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/pwizlite-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-static.dir/link.txt --verbose=1 +/usr/bin/ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" 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"CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o" +/usr/bin/ranlib libpwizlite.a +make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' +[ 98%] Built target pwizlite-static +[100%] Linking CXX shared library libpwizlite.so +cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pwizlite-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.8 "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" 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"CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o" -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/x86_64-linux-gnu/libz.so -Wl,--no-as-needed /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so -Wl,--as-needed /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 cd /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.8 libpwizlite.so.3 libpwizlite.so make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' [100%] Built target pwizlite-shared -/usr/bin/ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o" 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'/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' -[100%] Built target pwizlite-static make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' @@ -6058,7 +6094,7 @@ dh_testroot -O--build-system=cmake dh_prep -O--build-system=cmake dh_auto_install -O--build-system=cmake - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/libpwizlite-3.0.8/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libpwizlite-3.0.8/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.8 -B/build/reproducible-path/libpwizlite-3.0.8/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -6092,16 +6128,16 @@ dh_strip -a -O--build-system=cmake dh_makeshlibs -a -O--build-system=cmake dh_shlibdeps -a -O--build-system=cmake -dpkg-shlibdeps: warning: symbol H5P_CLS_DATASET_CREATE_ID_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Aread used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Pset_cache used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Aopen used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5T_NATIVE_LLONG_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Screate_simple used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Fopen used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Pset_deflate used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Dget_create_plist used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5P_CLS_DATASET_CREATE_ID_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_FLOAT_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Pget_cache used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5P_CLS_FILE_ACCESS_ID_g used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Dread used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Fclose used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Tset_size used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Fcreate used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Pget_chunk used by debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries dpkg-shlibdeps: warning: 43 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libpwizlite3t64/usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.8 was not linked against libhdf5_serial_cpp.so.310 (it uses none of the library's symbols) dh_installdeb -O--build-system=cmake @@ -6109,8 +6145,8 @@ dh_md5sums -O--build-system=cmake dh_builddeb -O--build-system=cmake dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.8-1_amd64.deb'. -dpkg-deb: building package 'libpwizlite3t64-dbgsym' in '../libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3t64' in '../libpwizlite3t64_3.0.8-1_amd64.deb'. +dpkg-deb: building package 'libpwizlite3t64-dbgsym' in '../libpwizlite3t64-dbgsym_3.0.8-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libpwizlite_3.0.8-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libpwizlite_3.0.8-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -6118,12 +6154,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/186467/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/186467/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2579436 and its subdirectories -I: Current time: Wed Aug 6 22:12:08 -12 2025 -I: pbuilder-time-stamp: 1754561528 +I: removing directory /srv/workspace/pbuilder/186467 and its subdirectories +I: Current time: Thu Sep 10 06:46:23 +14 2026 +I: pbuilder-time-stamp: 1788972383 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libpwizlite_3.0.8-1.diff: 94.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libpwizlite_3.0.8-1.diff.gz b2/build.log: 93.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 94.3% -- replaced with stdout Thu Aug 7 10:23:33 UTC 2025 I: diffoscope 303 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libpwizlite_unstable_amd64_1754562213 + touch /var/log/reproducible-builds/diffoscope_stamp_libpwizlite_unstable_amd64_1754562213 + RESULT=0 + systemd-run '--description=diffoscope on libpwizlite/3.0.8-1 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_27-66397 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8 --run-session -c jenkins-reproducible-unstable-diffoscope-bde4ca01-af01-4d80-bcdc-8c67fd3f299c -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/dbd-tmp-FKh4f4o ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/libpwizlite_3.0.8-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/libpwizlite_3.0.8-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/libpwizlite_3.0.8-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b1/libpwizlite_3.0.8-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b2/libpwizlite_3.0.8-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_27-66397.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/libpwizlite_3.0.8-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/libpwizlite_3.0.8-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/libpwizlite_3.0.8-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b1/libpwizlite_3.0.8-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.CLe7ZQp8/b2/libpwizlite_3.0.8-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 159ms CPU time consumed: 160ms _ _ _ _ _ _ _ | (_) |__ _ ____ _(_)___| (_) |_ ___ | | | '_ \| '_ \ \ /\ / / |_ / | | __/ _ \ | | | |_) | |_) \ V V /| |/ /| | | || __/ |_|_|_.__/| .__/ \_/\_/ |_/___|_|_|\__\___| |_| Thu Aug 7 10:23:33 UTC 2025 I: diffoscope 303 found no differences in the changes files, and a .buildinfo file also exists. Thu Aug 7 10:23:33 UTC 2025 I: libpwizlite from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-08-07 10:23:34] INFO: Starting at 2025-08-07 10:23:34.341151 [2025-08-07 10:23:35] INFO: Generating the pages of 1 package(s) [2025-08-07 10:23:35] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/libpwizlite didn't produce a buildlog, even though it has been built. [2025-08-07 10:23:35] INFO: Finished at 2025-08-07 10:23:35.162440, took: 0:00:00.821295 Thu Aug 7 10:23:35 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libpwizlite.html Thu Aug 7 10:23:35 UTC 2025 I: Removing signed libpwizlite_3.0.8-1_amd64.buildinfo.asc files: removed './b1/libpwizlite_3.0.8-1_amd64.buildinfo.asc' removed './b2/libpwizlite_3.0.8-1_amd64.buildinfo.asc' 1754562215 amd64 unstable libpwizlite Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libpwizlite_3.0.8-1.rbuild.log: 93.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libpwizlite_3.0.8-1.rbuild.log.gz [2025-08-07 10:23:35] INFO: Starting at 2025-08-07 10:23:35.440685 [2025-08-07 10:23:35] INFO: Generating the pages of 1 package(s) [2025-08-07 10:23:35] INFO: Finished at 2025-08-07 10:23:35.618876, took: 0:00:00.178193 All cleanup done. Thu Aug 7 10:23:35 UTC 2025 - total duration: 0h 13m 44s. Thu Aug 7 10:23:35 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-XZcU4wEd, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 13min 45.959s CPU time consumed: 5.051s