Running as unit: rb-build-amd64_27-71003.service; invocation ID: ce53048a4a86428598805028cce81945 ==================================================================================== Mon Sep 15 05:31:40 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_27) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Mon Sep 15 05:31:40 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-C0Tq38aD" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 05:31:40 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Mon Sep 15 05:31:40 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-8V3ozy' Mon Sep 15 05:31:40 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Mon Sep 15 05:31:40 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-iGyhV3' ok, let's check if denss is building anywhere yet… ok, denss is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of denss in forky on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Mon Sep 15 05:31:45 UTC 2025 I: starting to build denss/forky/amd64 on jenkins on '2025-09-15 05:31' Mon Sep 15 05:31:45 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/71003/console.log 1757914305 amd64 forky denss Mon Sep 15 05:31:45 UTC 2025 I: Downloading source for forky/denss=0.0.1+20200710gac8923a-2 --2025-09-15 05:31:46-- http://deb.debian.org/debian/pool/main/d/denss/denss_0.0.1%2b20200710gac8923a-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1749 (1.7K) [text/prs.lines.tag] Saving to: ‘denss_0.0.1+20200710gac8923a-2.dsc’ 0K . 100% 210M=0s 2025-09-15 05:31:46 (210 MB/s) - ‘denss_0.0.1+20200710gac8923a-2.dsc’ saved [1749/1749] --2025-09-15 05:31:46-- http://deb.debian.org/debian/pool/main/d/denss/denss_0.0.1%2b20200710gac8923a-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1749 (1.7K) [text/prs.lines.tag] Saving to: ‘denss_0.0.1+20200710gac8923a-2.dsc’ 0K . 100% 210M=0s 2025-09-15 05:31:46 (210 MB/s) - ‘denss_0.0.1+20200710gac8923a-2.dsc’ saved [1749/1749] Mon Sep 15 05:31:46 UTC 2025 I: denss_0.0.1+20200710gac8923a-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: denss Binary: python3-denss Architecture: all Version: 0.0.1+20200710gac8923a-2 Maintainer: Debian Science Maintainers Uploaders: Sebastien Delafond Homepage: https://github.com/tdgrant1/denss Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/science-team/denss Vcs-Git: https://salsa.debian.org/science-team/denss.git Build-Depends: debhelper (>= 12), dh-python, python3-all, python3-numpy, python3-scipy, python3-setuptools Package-List: python3-denss deb python optional arch=all Checksums-Sha1: 874dd0a803eadfbbb2423997fd648ff1a8996ba7 92220 denss_0.0.1+20200710gac8923a.orig.tar.xz 567bd633863ba374a0da74b360cfce035146a519 1796 denss_0.0.1+20200710gac8923a-2.debian.tar.xz Checksums-Sha256: 3c1314356c8850eb6f018016860e3eb10b41e790e65e0e0bc2326613ff94692b 92220 denss_0.0.1+20200710gac8923a.orig.tar.xz 956fbd0060eae5ff46b5ff343211d0b278b9996669399159cf43eb21365b6a4f 1796 denss_0.0.1+20200710gac8923a-2.debian.tar.xz Files: 8bba004957fe31cb62ca3a4cf7cef7ea 92220 denss_0.0.1+20200710gac8923a.orig.tar.xz 0e176dbea887f4091a5bc9e0f2c4df5c 1796 denss_0.0.1+20200710gac8923a-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEAqSkbVtrXP4xJMh3EL6Jg/PVnWQFAl/Esv4ACgkQEL6Jg/PV nWTvwQgAuZtvauUVTT1oFIhGEdwiU2G+H1/jqkLRSfGSbYSlj//aAey+ouYGVX8c AsgRXbF5Df63lxPm8p4pGqkp4lZVB8qAau1uq+x/R3ntXTFAHXjhLHH/g7uVbGN4 Qh6ZsYEuTYttBtZb78TG3RqD2L68tR1MWEBWz92U0HCSNBwu73L/5C8kBetqda1A U696cHRz2uM0W8hoXwjD4J1SgtVHYowdmHk61H1YO0RxfARD860A4xs33ygXsQbD g7d5PihsM0w8iI4r2yr13ySQKrBCvl468W7BGZWwe9iNc2718MEmL+1Y+zA9ezHa KCh9gaze3FjlGSThxtEQjsuOrf6zQQ== =QAKX -----END PGP SIGNATURE----- Mon Sep 15 05:31:46 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 05:31:46 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon Sep 15 05:31:46 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon Sep 15 05:31:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Mon Sep 15 05:31:46 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-pT797h' ==================================================================================== Mon Sep 15 05:31:46 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 denss forky /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5 0.0.1+20200710gac8923a-2" as arguments. Mon Sep 15 05:31:46 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-FhGihZmi" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 05:31:46 UTC 2025 I: Downloading source for forky/denss=0.0.1+20200710gac8923a-2 Reading package lists... NOTICE: 'denss' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/denss.git Please use: git clone https://salsa.debian.org/science-team/denss.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 95.8 kB of source archives. Get:1 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (dsc) [1749 B] Get:2 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (tar) [92.2 kB] Get:3 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (diff) [1796 B] Fetched 95.8 kB in 0s (8282 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'denss' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/denss.git Please use: git clone https://salsa.debian.org/science-team/denss.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 95.8 kB of source archives. Get:1 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (dsc) [1749 B] Get:2 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (tar) [92.2 kB] Get:3 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (diff) [1796 B] Fetched 95.8 kB in 0s (8282 kB/s) Download complete and in download only mode ============================================================================= Building denss in forky on amd64 on ionos11-amd64 now. Date: Mon Sep 15 05:31:46 UTC 2025 Date UTC: Mon Sep 15 05:31:46 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 17:31:46 -12 2025 I: pbuilder-time-stamp: 1757914306 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [denss_0.0.1+20200710gac8923a-2.dsc] I: copying [./denss_0.0.1+20200710gac8923a.orig.tar.xz] I: copying [./denss_0.0.1+20200710gac8923a-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./denss_0.0.1+20200710gac8923a-2.dsc: no acceptable signature found dpkg-source: info: extracting denss in denss-0.0.1+20200710gac8923a dpkg-source: info: unpacking denss_0.0.1+20200710gac8923a.orig.tar.xz dpkg-source: info: unpacking denss_0.0.1+20200710gac8923a-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1388812/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d1e08bdc5c55452d9a81cefcc58db221' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1388812' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/pbuilderrc_m09C --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b1 --logfile b1/build.log denss_0.0.1+20200710gac8923a-2.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1388812/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12), dh-python, python3-all, python3-numpy, python3-scipy, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-decorator{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pil python3-pooch python3-yaml wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 45.4 MB of archives. After unpacking 196 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-3 [894 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 51 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 63 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Fetched 45.4 MB in 1s (40.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20251 files and directories currently installed.) 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Unpacking python3-scipy (1.15.3-1.1) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 15 05:33:32 UTC 2025. Universal Time is now: Mon Sep 15 05:33:32 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.3-2) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:amd64 (15.2.0-3) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-decorator (5.2.1-2) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/denss-0.0.1+20200710gac8923a/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../denss_0.0.1+20200710gac8923a-2_source.changes dpkg-buildpackage: info: source package denss dpkg-buildpackage: info: source version 0.0.1+20200710gac8923a-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sebastien Delafond dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/denss-0.0.1+20200710gac8923a/.pybuild/cpython3_3.13_denss/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-denss/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/denss-0.0.1+20200710gac8923a/debian/python3-denss /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:330: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:331: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:332: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:334: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:336: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:337: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:338: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:340: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:341: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:343: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:344: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:487: SyntaxWarning: invalid escape sequence '\s' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.refine.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.all.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.rho2dat.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.calcfsc.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.average.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.pdb2mrc.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align_by_principal_axes.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align_and_average.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.mrcops.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align2xyz.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.fit_data.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/fsc2res.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.get_info.py dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-denss: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-denss' in '../python3-denss_0.0.1+20200710gac8923a-2_all.deb'. dpkg-genbuildinfo --build=binary -O../denss_0.0.1+20200710gac8923a-2_amd64.buildinfo dpkg-genchanges --build=binary -O../denss_0.0.1+20200710gac8923a-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1388812 and its subdirectories I: Current time: Sun Sep 14 17:34:57 -12 2025 I: pbuilder-time-stamp: 1757914497 Mon Sep 15 05:34:57 UTC 2025 I: Signing ./b1/denss_0.0.1+20200710gac8923a-2_amd64.buildinfo as denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc Mon Sep 15 05:34:57 UTC 2025 I: Signed ./b1/denss_0.0.1+20200710gac8923a-2_amd64.buildinfo as ./b1/denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc Mon Sep 15 05:34:57 UTC 2025 - build #1 for denss/forky/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Mon Sep 15 05:34:57 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-FhGihZmi, removing. /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 05:34 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 05:31 b2 -rw-rw-r-- 1 jenkins jenkins 1749 Nov 30 2020 denss_0.0.1+20200710gac8923a-2.dsc -rw------- 1 jenkins jenkins 2918 Sep 15 05:31 rbuildlog.uaQXIcr /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b1: total 124 -rw-r--r-- 1 jenkins jenkins 35973 Sep 15 05:34 build.log -rw-r--r-- 1 jenkins jenkins 1796 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1749 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2.dsc -rw-r--r-- 1 jenkins jenkins 5744 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6626 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1201 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 1359 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2_source.changes -rw-r--r-- 1 jenkins jenkins 55740 Sep 15 05:34 python3-denss_0.0.1+20200710gac8923a-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b2: total 0 Mon Sep 15 05:34:58 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 17:31:46 -12 2025 I: pbuilder-time-stamp: 1757914306 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [denss_0.0.1+20200710gac8923a-2.dsc] I: copying [./denss_0.0.1+20200710gac8923a.orig.tar.xz] I: copying [./denss_0.0.1+20200710gac8923a-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./denss_0.0.1+20200710gac8923a-2.dsc: no acceptable signature found dpkg-source: info: extracting denss in denss-0.0.1+20200710gac8923a dpkg-source: info: unpacking denss_0.0.1+20200710gac8923a.orig.tar.xz dpkg-source: info: unpacking denss_0.0.1+20200710gac8923a-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1388812/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d1e08bdc5c55452d9a81cefcc58db221' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1388812' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/pbuilderrc_m09C --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b1 --logfile b1/build.log denss_0.0.1+20200710gac8923a-2.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1388812/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12), dh-python, python3-all, python3-numpy, python3-scipy, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-decorator{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pil python3-pooch python3-yaml wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 45.4 MB of archives. After unpacking 196 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-3 [894 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 51 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 63 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Fetched 45.4 MB in 1s (40.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20251 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21266 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../01-python3-numpy-dev_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../02-libblas3_3.12.1-7_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../03-libgfortran5_15.2.0-3_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../04-liblapack3_3.12.1-7_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../05-python3-numpy_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1.2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. 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Unpacking python3-scipy (1.15.3-1.1) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 15 05:33:32 UTC 2025. Universal Time is now: Mon Sep 15 05:33:32 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.3-2) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:amd64 (15.2.0-3) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-decorator (5.2.1-2) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/denss-0.0.1+20200710gac8923a/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../denss_0.0.1+20200710gac8923a-2_source.changes dpkg-buildpackage: info: source package denss dpkg-buildpackage: info: source version 0.0.1+20200710gac8923a-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sebastien Delafond dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/denss-0.0.1+20200710gac8923a/.pybuild/cpython3_3.13_denss/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-denss/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/denss-0.0.1+20200710gac8923a/debian/python3-denss /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:330: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:331: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:332: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:334: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:336: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:337: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:338: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:340: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:341: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:343: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:344: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:487: SyntaxWarning: invalid escape sequence '\s' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.refine.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.all.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.rho2dat.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.calcfsc.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.average.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.pdb2mrc.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align_by_principal_axes.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align_and_average.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.mrcops.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align2xyz.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.fit_data.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/fsc2res.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.get_info.py dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-denss: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-denss' in '../python3-denss_0.0.1+20200710gac8923a-2_all.deb'. dpkg-genbuildinfo --build=binary -O../denss_0.0.1+20200710gac8923a-2_amd64.buildinfo dpkg-genchanges --build=binary -O../denss_0.0.1+20200710gac8923a-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1388812 and its subdirectories I: Current time: Sun Sep 14 17:34:57 -12 2025 I: pbuilder-time-stamp: 1757914497 Mon Sep 15 05:34:58 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Mon Sep 15 05:34:58 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Mon Sep 15 05:34:58 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Mon Sep 15 05:34:58 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-j1yLn0' ==================================================================================== Sun Oct 18 11:57:57 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 denss forky /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5 0.0.1+20200710gac8923a-2" as arguments. Sun Oct 18 11:57:57 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-QpqLj55Q" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 11:57:57 UTC 2026 I: Downloading source for forky/denss=0.0.1+20200710gac8923a-2 Reading package lists... NOTICE: 'denss' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/denss.git Please use: git clone https://salsa.debian.org/science-team/denss.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 95.8 kB of source archives. Get:1 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (dsc) [1749 B] Get:2 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (tar) [92.2 kB] Get:3 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (diff) [1796 B] Fetched 95.8 kB in 0s (7458 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'denss' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/denss.git Please use: git clone https://salsa.debian.org/science-team/denss.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 95.8 kB of source archives. Get:1 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (dsc) [1749 B] Get:2 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (tar) [92.2 kB] Get:3 http://deb.debian.org/debian forky/main denss 0.0.1+20200710gac8923a-2 (diff) [1796 B] Fetched 95.8 kB in 0s (7458 kB/s) Download complete and in download only mode ============================================================================= Re-Building denss in forky on amd64 on ionos15-amd64 now. Date: Sun Oct 18 11:57:57 UTC 2026 Date UTC: Sun Oct 18 11:57:57 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/pbuilderrc_pL3c + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' denss = debian-installer -o denss = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' denss = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/pbuilderrc_pL3c --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b2 --logfile b2/build.log denss_0.0.1+20200710gac8923a-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 19 01:57:58 +14 2026 I: pbuilder-time-stamp: 1792324678 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [denss_0.0.1+20200710gac8923a-2.dsc] I: copying [./denss_0.0.1+20200710gac8923a.orig.tar.xz] I: copying [./denss_0.0.1+20200710gac8923a-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./denss_0.0.1+20200710gac8923a-2.dsc: no acceptable signature found dpkg-source: info: extracting denss in denss-0.0.1+20200710gac8923a dpkg-source: info: unpacking denss_0.0.1+20200710gac8923a.orig.tar.xz dpkg-source: info: unpacking denss_0.0.1+20200710gac8923a-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 18 11:58 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=9e58913c015043a9bd4d272496dc67f8 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1471728 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/pbuilderrc_pL3c --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b2 --logfile b2/build.log denss_0.0.1+20200710gac8923a-2.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12), dh-python, python3-all, python3-numpy, python3-scipy, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-decorator{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pil python3-pooch python3-yaml wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 45.4 MB of archives. After unpacking 196 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-3 [894 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 51 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 63 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Fetched 45.4 MB in 0s (152 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Unpacking python3-scipy (1.15.3-1.1) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Oct 18 11:58:24 UTC 2026. Universal Time is now: Sun Oct 18 11:58:24 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.3-2) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:amd64 (15.2.0-3) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-decorator (5.2.1-2) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/denss-0.0.1+20200710gac8923a/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../denss_0.0.1+20200710gac8923a-2_source.changes dpkg-buildpackage: info: source package denss dpkg-buildpackage: info: source version 0.0.1+20200710gac8923a-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sebastien Delafond dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/denss-0.0.1+20200710gac8923a/.pybuild/cpython3_3.13_denss/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-denss/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/denss-0.0.1+20200710gac8923a/debian/python3-denss /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:330: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:331: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:332: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:334: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:336: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:337: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:338: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:340: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:341: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:343: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:344: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/saxstats/saxstats.py:487: SyntaxWarning: invalid escape sequence '\s' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.mrcops.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.refine.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align2xyz.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align_and_average.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.rho2dat.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.average.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.all.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.get_info.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/fsc2res.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.pdb2mrc.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align_by_principal_axes.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.fit_data.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.calcfsc.py dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-denss: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-denss' in '../python3-denss_0.0.1+20200710gac8923a-2_all.deb'. dpkg-genbuildinfo --build=binary -O../denss_0.0.1+20200710gac8923a-2_amd64.buildinfo dpkg-genchanges --build=binary -O../denss_0.0.1+20200710gac8923a-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1471728 and its subdirectories I: Current time: Mon Oct 19 01:58:53 +14 2026 I: pbuilder-time-stamp: 1792324733 + false + set +x Sun Oct 18 11:58:53 UTC 2026 I: Signing ./b2/denss_0.0.1+20200710gac8923a-2_amd64.buildinfo as denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc Sun Oct 18 11:58:53 UTC 2026 I: Signed ./b2/denss_0.0.1+20200710gac8923a-2_amd64.buildinfo as ./b2/denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc Sun Oct 18 11:58:53 UTC 2026 - build #2 for denss/forky/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Sun Oct 18 11:58:53 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-QpqLj55Q, removing. /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5: total 52 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 05:34 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 05:35 b2 -rw-rw-r-- 1 jenkins jenkins 1749 Nov 30 2020 denss_0.0.1+20200710gac8923a-2.dsc -rw------- 1 jenkins jenkins 39180 Sep 15 05:34 rbuildlog.uaQXIcr /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b1: total 128 -rw-r--r-- 1 jenkins jenkins 35973 Sep 15 05:34 build.log -rw-r--r-- 1 jenkins jenkins 1796 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1749 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2.dsc -rw-r--r-- 1 jenkins jenkins 5744 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6626 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1201 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 1359 Sep 15 05:34 denss_0.0.1+20200710gac8923a-2_source.changes -rw-r--r-- 1 jenkins jenkins 55740 Sep 15 05:34 python3-denss_0.0.1+20200710gac8923a-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b2: total 128 -rw-rw-r-- 1 jenkins jenkins 37899 Sep 15 05:35 build.log -rw-r--r-- 1 jenkins jenkins 1796 Sep 15 05:35 denss_0.0.1+20200710gac8923a-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1749 Sep 15 05:35 denss_0.0.1+20200710gac8923a-2.dsc -rw-rw-r-- 1 jenkins jenkins 5744 Sep 15 05:35 denss_0.0.1+20200710gac8923a-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6626 Sep 15 05:35 denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1201 Sep 15 05:35 denss_0.0.1+20200710gac8923a-2_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1359 Sep 15 05:35 denss_0.0.1+20200710gac8923a-2_source.changes -rw-r--r-- 1 jenkins jenkins 55740 Sep 15 05:35 python3-denss_0.0.1+20200710gac8923a-2_all.deb Mon Sep 15 05:35:55 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Mon Sep 15 05:35:55 UTC 2025 I: denss_0.0.1+20200710gac8923a-2_amd64.changes: Format: 1.8 Date: Mon, 30 Nov 2020 09:51:32 +0100 Source: denss Binary: python3-denss Architecture: all Version: 0.0.1+20200710gac8923a-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Sebastien Delafond Description: python3-denss - calculate electron density from a solution scattering profile Changes: denss (0.0.1+20200710gac8923a-2) unstable; urgency=medium . * Source only upload for migration to testing Checksums-Sha1: 3e245c9bc5b5c0378d7a1eef01d3c97f3ae88a2e 5744 denss_0.0.1+20200710gac8923a-2_amd64.buildinfo ac4a594d878ee241069d31650f497389bbd18842 55740 python3-denss_0.0.1+20200710gac8923a-2_all.deb Checksums-Sha256: 72002b0eba7454bc4062e6db1a38a10caf0f305f55bab7fc351d223c79e77326 5744 denss_0.0.1+20200710gac8923a-2_amd64.buildinfo 65b8cde68997679927ebb4b826d83b66bfd310d6d33915231627459e57eac49c 55740 python3-denss_0.0.1+20200710gac8923a-2_all.deb Files: d7020232a43ee8bb9f7cd02b0199d5cd 5744 python optional denss_0.0.1+20200710gac8923a-2_amd64.buildinfo a3e57ea4e6dd815f761689601e714c7e 55740 python optional python3-denss_0.0.1+20200710gac8923a-2_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/denss_0.0.1+20200710gac8923a-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/denss_0.0.1+20200710gac8923a-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/denss_0.0.1+20200710gac8923a-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/denss_0.0.1+20200710gac8923a-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/denss_0.0.1+20200710gac8923a-2_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/denss_0.0.1+20200710gac8923a-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-15 05:34:58.050254981 +0000 +++ b2/build.log 2025-09-15 05:35:55.118325684 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 14 17:31:46 -12 2025 -I: pbuilder-time-stamp: 1757914306 +I: Current time: Mon Oct 19 01:57:58 +14 2026 +I: pbuilder-time-stamp: 1792324678 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -22,53 +22,85 @@ dpkg-source: info: unpacking denss_0.0.1+20200710gac8923a-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1388812/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 18 11:58 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d1e08bdc5c55452d9a81cefcc58db221' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1388812' - PS1='# ' - PS2='> ' + INVOCATION_ID=9e58913c015043a9bd4d272496dc67f8 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1471728 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/pbuilderrc_m09C --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b1 --logfile b1/build.log denss_0.0.1+20200710gac8923a-2.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/pbuilderrc_pL3c --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b2 --logfile b2/build.log denss_0.0.1+20200710gac8923a-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1388812/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -177,7 +209,7 @@ Get: 61 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 63 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] -Fetched 45.4 MB in 1s (40.7 MB/s) +Fetched 45.4 MB in 0s (152 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -394,8 +426,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Sep 15 05:33:32 UTC 2025. -Universal Time is now: Mon Sep 15 05:33:32 UTC 2025. +Local time is now: Sun Oct 18 11:58:24 UTC 2026. +Universal Time is now: Sun Oct 18 11:58:24 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -463,7 +495,11 @@ fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/denss-0.0.1+20200710gac8923a/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../denss_0.0.1+20200710gac8923a-2_source.changes +I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/denss-0.0.1+20200710gac8923a/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../denss_0.0.1+20200710gac8923a-2_source.changes dpkg-buildpackage: info: source package denss dpkg-buildpackage: info: source version 0.0.1+20200710gac8923a-2 dpkg-buildpackage: info: source distribution unstable @@ -526,21 +562,21 @@ dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild +I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.mrcops.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.refine.py -I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.all.py +I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align2xyz.py +I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align_and_average.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.rho2dat.py -I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.calcfsc.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.average.py +I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align.py +I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.all.py +I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.get_info.py +I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/fsc2res.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.pdb2mrc.py -I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align_by_principal_axes.py -I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align_and_average.py -I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align.py -I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.mrcops.py -I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.align2xyz.py I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.fit_data.py -I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/fsc2res.py -I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.get_info.py +I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.py +I: dh_python3 tools:114: replacing shebang in debian/python3-denss/usr/bin/denss.calcfsc.py dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild @@ -562,12 +598,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1471728/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1388812 and its subdirectories -I: Current time: Sun Sep 14 17:34:57 -12 2025 -I: pbuilder-time-stamp: 1757914497 +I: removing directory /srv/workspace/pbuilder/1471728 and its subdirectories +I: Current time: Mon Oct 19 01:58:53 +14 2026 +I: pbuilder-time-stamp: 1792324733 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/denss_0.0.1+20200710gac8923a-2.diff: 71.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/denss_0.0.1+20200710gac8923a-2.diff.gz b2/build.log: 79.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 80.0% -- replaced with stdout Mon Sep 15 05:35:56 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_denss_forky_amd64_1757914556 + touch /var/log/reproducible-builds/diffoscope_stamp_denss_forky_amd64_1757914556 + RESULT=0 + systemd-run '--description=diffoscope on denss/0.0.1+20200710gac8923a-2 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_27-71003 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5 --run-session -c jenkins-reproducible-forky-diffoscope-afefc849-31ba-458d-a9c1-773bcffae1cf -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/dbd-tmp-sQazm2I ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/denss_0.0.1+20200710gac8923a-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/denss_0.0.1+20200710gac8923a-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/denss_0.0.1+20200710gac8923a-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b1/denss_0.0.1+20200710gac8923a-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b2/denss_0.0.1+20200710gac8923a-2_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_27-71003.service; invocation ID: 52ae98c964b84384a7337503a8715a9d # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/denss_0.0.1+20200710gac8923a-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/denss_0.0.1+20200710gac8923a-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/denss_0.0.1+20200710gac8923a-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b1/denss_0.0.1+20200710gac8923a-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.f5IPWYj5/b2/denss_0.0.1+20200710gac8923a-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 231ms CPU time consumed: 170ms Memory peak: 17.7M (swap: 0B) _ __| | ___ _ __ ___ ___ / _` |/ _ \ '_ \/ __/ __| | (_| | __/ | | \__ \__ \ \__,_|\___|_| |_|___/___/ Mon Sep 15 05:35:56 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Mon Sep 15 05:35:56 UTC 2025 I: denss from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-15 05:35:56] INFO: Starting at 2025-09-15 05:35:56.897075 [2025-09-15 05:35:57] INFO: Generating the pages of 1 package(s) [2025-09-15 05:35:57] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/denss didn't produce a buildlog, even though it has been built. [2025-09-15 05:35:57] INFO: Finished at 2025-09-15 05:35:57.075322, took: 0:00:00.178250 Mon Sep 15 05:35:57 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/denss.html Mon Sep 15 05:35:57 UTC 2025 I: Removing signed denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc files: removed './b1/denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc' removed './b2/denss_0.0.1+20200710gac8923a-2_amd64.buildinfo.asc' 1757914557 amd64 forky denss Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/denss_0.0.1+20200710gac8923a-2.rbuild.log: 77.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/denss_0.0.1+20200710gac8923a-2.rbuild.log.gz [2025-09-15 05:35:57] INFO: Starting at 2025-09-15 05:35:57.399379 [2025-09-15 05:35:57] INFO: Generating the pages of 1 package(s) [2025-09-15 05:35:57] INFO: Finished at 2025-09-15 05:35:57.631607, took: 0:00:00.232232 All cleanup done. Mon Sep 15 05:35:57 UTC 2025 - total duration: 0h 4m 16s. Mon Sep 15 05:35:57 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-C0Tq38aD, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 4min 17.686s CPU time consumed: 2.955s Memory peak: 37.6M (swap: 0B)