Running as unit: rb-build-amd64_27-71144.service ==================================================================================== Tue Sep 16 13:32:54 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_27) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Tue Sep 16 13:32:54 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-ebwbvLkI" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Sep 16 13:32:54 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Tue Sep 16 13:32:54 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-uNFMuO' Tue Sep 16 13:32:54 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Tue Sep 16 13:32:54 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-xsuuks' ok, let's check if edtsurf is building anywhere yet… ok, edtsurf is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of edtsurf in forky on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Tue Sep 16 13:33:17 UTC 2025 I: starting to build edtsurf/forky/amd64 on jenkins on '2025-09-16 13:32' Tue Sep 16 13:33:17 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/71144/console.log 1758029597 amd64 forky edtsurf Tue Sep 16 13:33:17 UTC 2025 I: Downloading source for forky/edtsurf=0.2009-10 --2025-09-16 13:33:17-- http://deb.debian.org/debian/pool/main/e/edtsurf/edtsurf_0.2009-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2026 (2.0K) [text/prs.lines.tag] Saving to: ‘edtsurf_0.2009-10.dsc’ 0K . 100% 264M=0s 2025-09-16 13:33:17 (264 MB/s) - ‘edtsurf_0.2009-10.dsc’ saved [2026/2026] --2025-09-16 13:33:17-- http://deb.debian.org/debian/pool/main/e/edtsurf/edtsurf_0.2009-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2026 (2.0K) [text/prs.lines.tag] Saving to: ‘edtsurf_0.2009-10.dsc’ 0K . 100% 264M=0s 2025-09-16 13:33:17 (264 MB/s) - ‘edtsurf_0.2009-10.dsc’ saved [2026/2026] Tue Sep 16 13:33:17 UTC 2025 I: edtsurf_0.2009-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: edtsurf Binary: edtsurf Architecture: any Version: 0.2009-10 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Pranav Ballaney Homepage: https://zhanglab.ccmb.med.umich.edu/EDTSurf/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/edtsurf Vcs-Git: https://salsa.debian.org/med-team/edtsurf.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: edtsurf deb science optional arch=any Checksums-Sha1: f052d417db24a706866dd2f98c069f026c575c7a 38539 edtsurf_0.2009.orig.tar.gz 100acdf1684c739328ce1e8d5b9f08c7f2b4b20e 99696 edtsurf_0.2009-10.debian.tar.xz Checksums-Sha256: 9025455d00d967016fd50635d4bf550d78097ee9160ca33e3e6246b9b21bea7a 38539 edtsurf_0.2009.orig.tar.gz 6dca4d8a84aa7dcac0d5c012f3554625e3623a397bca41b65119cbaa33d9f53c 99696 edtsurf_0.2009-10.debian.tar.xz Files: ed09afbe1a3673aaa8095bfdd69454a2 38539 edtsurf_0.2009.orig.tar.gz 1daf6b5792c18b2a8e895bddc5176969 99696 edtsurf_0.2009-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmAS3bEACgkQPCZ2P2xn 5uKfRg/+I/NJPNgrY/HLh2UJL5T2z42WpjpOLSfaTXMtD+uPTNui6q3lhCsEkCBW 8C84B9XsI6UEifgjluIwSvpmVb3fytxv0XsUccwQoHZtF2tHF8SRbsJEA+Pelv6M CLKRECg8SwimgaYYnvw5mCEIyXsyfAvxU5nTbHI3l3UIOkflQ9ARTb8TBPBROTO+ 6pGtxLs+Fikp7LX56gCczx+6bmSFys/UrmSIAOrmmx4Gd6ndOzXE+ndK90W7szaP FoikNRrxI7ur7YFl0FUObfu6lYiWe7bNqNKvajImqWYxoKnSM7H3KWt5CV4AboNu Y01LqNVO1tfzGwTaUfM4fzlLCKWeAdbcNTlDg9HYzjb/8KywUIgl4jKTbC/Oa4YH noS9Q1X1Z1ekyhwdWCgYrp+DgXZ9mY9srK0cpSPvW0Cf88otomk68hPptpZoTqSz xLGS7Cbc92NorTMbt62KWicJvFFkozXv/M03gbPmBrY8UYidm7HAxLPXhrNyTiJC HrMxzSFggcXqcAUMSDG2GevrtmqB8b1K4jbmBFLKPkUXEgQzN+aEMAKY3XZOe34n YEi/g5w9E5lStMgaVDZaZyxrZifsC6FWRrxvdHLLIiadRL5c8CjjIy9myzEN9dVr sCCxKXo5LiCSPcf8YxXlkh5I1MUSUctjWwLy4yPsi0akVucn5gs= =MEzt -----END PGP SIGNATURE----- Tue Sep 16 13:33:17 UTC 2025 I: Checking whether the package is not for us Tue Sep 16 13:33:17 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Tue Sep 16 13:33:17 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Tue Sep 16 13:33:17 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Tue Sep 16 13:33:17 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-8lJQid' ==================================================================================== Tue Sep 16 13:33:18 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 edtsurf forky /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU 0.2009-10" as arguments. Tue Sep 16 13:33:18 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-hPRahwQI" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Sep 16 13:33:18 UTC 2025 I: Downloading source for forky/edtsurf=0.2009-10 Reading package lists... NOTICE: 'edtsurf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/edtsurf.git Please use: git clone https://salsa.debian.org/med-team/edtsurf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (dsc) [2026 B] Get:2 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (tar) [38.5 kB] Get:3 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (diff) [99.7 kB] Fetched 140 kB in 0s (2589 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'edtsurf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/edtsurf.git Please use: git clone https://salsa.debian.org/med-team/edtsurf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (dsc) [2026 B] Get:2 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (tar) [38.5 kB] Get:3 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (diff) [99.7 kB] Fetched 140 kB in 0s (2589 kB/s) Download complete and in download only mode ============================================================================= Building edtsurf in forky on amd64 on ionos11-amd64 now. Date: Tue Sep 16 13:33:19 UTC 2025 Date UTC: Tue Sep 16 13:33:19 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Sep 16 01:33:19 -12 2025 I: pbuilder-time-stamp: 1758029599 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [edtsurf_0.2009-10.dsc] I: copying [./edtsurf_0.2009.orig.tar.gz] I: copying [./edtsurf_0.2009-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./edtsurf_0.2009-10.dsc: no acceptable signature found dpkg-source: info: extracting edtsurf in edtsurf-0.2009 dpkg-source: info: unpacking edtsurf_0.2009.orig.tar.gz dpkg-source: info: unpacking edtsurf_0.2009-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying CFLAGS_missing_in_Makefile.patch dpkg-source: info: applying fix-use-of-unsigned-char.patch dpkg-source: info: applying fix_return_values.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2382007/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1093d63b28cc4a5881b987356ca4be0d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2382007' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/pbuilderrc_hPkM --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b1 --logfile b1/build.log edtsurf_0.2009-10.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2382007/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Fetched 11.2 MB in 3s (3256 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/edtsurf-0.2009/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../edtsurf_0.2009-10_source.changes dpkg-buildpackage: info: source package edtsurf dpkg-buildpackage: info: source version 0.2009-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/edtsurf-0.2009' dh_clean rm -f EDTSurf make[1]: Leaving directory '/build/reproducible-path/edtsurf-0.2009' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j40 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/edtsurf-0.2009' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ParsePDB.cpp -o ParsePDB.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ProteinSurface.cpp -o ProteinSurface.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c EDTSurf.cpp -o EDTSurf.o ParsePDB.cpp: In member function 'bool ParsePDB::loadpdb(char*)': ParsePDB.cpp:1462:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1462 | fgets(oneline,255,filein); | ~~~~~^~~~~~~~~~~~~~~~~~~~ ParsePDB.cpp: In member function 'void ParsePDB::splitpdb()': ParsePDB.cpp:1524:55: warning: '%d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] 1524 | sprintf(tmpn,"%d",i); | ^~ ParsePDB.cpp:1524:54: note: directive argument in the range [10, 2147483647] 1524 | sprintf(tmpn,"%d",i); | ^~~~ In file included from /usr/include/stdio.h:970, from CommonPara.h:10, from ParsePDB.cpp:12: In function 'int sprintf(char*, const char*, ...)', inlined from 'void ParsePDB::splitpdb()' at ParsePDB.cpp:1524:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 11 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now ParsePDB.o ProteinSurface.o EDTSurf.o -o EDTSurf rm *.o make[1]: Leaving directory '/build/reproducible-path/edtsurf-0.2009' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/edtsurf/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'edtsurf-dbgsym' in '../edtsurf-dbgsym_0.2009-10_amd64.deb'. dpkg-deb: building package 'edtsurf' in '../edtsurf_0.2009-10_amd64.deb'. dpkg-genbuildinfo --build=binary -O../edtsurf_0.2009-10_amd64.buildinfo dpkg-genchanges --build=binary -O../edtsurf_0.2009-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2382007 and its subdirectories I: Current time: Tue Sep 16 01:36:13 -12 2025 I: pbuilder-time-stamp: 1758029773 Tue Sep 16 13:36:13 UTC 2025 I: Signing ./b1/edtsurf_0.2009-10_amd64.buildinfo as edtsurf_0.2009-10_amd64.buildinfo.asc Tue Sep 16 13:36:13 UTC 2025 I: Signed ./b1/edtsurf_0.2009-10_amd64.buildinfo as ./b1/edtsurf_0.2009-10_amd64.buildinfo.asc Tue Sep 16 13:36:13 UTC 2025 - build #1 for edtsurf/forky/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Tue Sep 16 13:36:13 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hPRahwQI, removing. /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 16 13:36 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 16 13:33 b2 -rw-rw-r-- 1 jenkins jenkins 2026 Jan 28 2021 edtsurf_0.2009-10.dsc -rw------- 1 jenkins jenkins 3132 Sep 16 13:33 rbuildlog.wtxLiml /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b1: total 420 -rw-r--r-- 1 jenkins jenkins 20063 Sep 16 13:36 build.log -rw-r--r-- 1 jenkins jenkins 105144 Sep 16 13:36 edtsurf-dbgsym_0.2009-10_amd64.deb -rw-r--r-- 1 jenkins jenkins 99696 Sep 16 13:36 edtsurf_0.2009-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2026 Sep 16 13:36 edtsurf_0.2009-10.dsc -rw-r--r-- 1 jenkins jenkins 4865 Sep 16 13:36 edtsurf_0.2009-10_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5747 Sep 16 13:36 edtsurf_0.2009-10_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1515 Sep 16 13:36 edtsurf_0.2009-10_amd64.changes -rw-r--r-- 1 jenkins jenkins 159144 Sep 16 13:36 edtsurf_0.2009-10_amd64.deb -rw-r--r-- 1 jenkins jenkins 1374 Sep 16 13:36 edtsurf_0.2009-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b2: total 0 Tue Sep 16 13:36:13 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Sep 16 01:33:19 -12 2025 I: pbuilder-time-stamp: 1758029599 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [edtsurf_0.2009-10.dsc] I: copying [./edtsurf_0.2009.orig.tar.gz] I: copying [./edtsurf_0.2009-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./edtsurf_0.2009-10.dsc: no acceptable signature found dpkg-source: info: extracting edtsurf in edtsurf-0.2009 dpkg-source: info: unpacking edtsurf_0.2009.orig.tar.gz dpkg-source: info: unpacking edtsurf_0.2009-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying CFLAGS_missing_in_Makefile.patch dpkg-source: info: applying fix-use-of-unsigned-char.patch dpkg-source: info: applying fix_return_values.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2382007/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1093d63b28cc4a5881b987356ca4be0d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2382007' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/pbuilderrc_hPkM --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b1 --logfile b1/build.log edtsurf_0.2009-10.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2382007/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Fetched 11.2 MB in 3s (3256 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/edtsurf-0.2009/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../edtsurf_0.2009-10_source.changes dpkg-buildpackage: info: source package edtsurf dpkg-buildpackage: info: source version 0.2009-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/edtsurf-0.2009' dh_clean rm -f EDTSurf make[1]: Leaving directory '/build/reproducible-path/edtsurf-0.2009' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j40 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/edtsurf-0.2009' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ParsePDB.cpp -o ParsePDB.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ProteinSurface.cpp -o ProteinSurface.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c EDTSurf.cpp -o EDTSurf.o ParsePDB.cpp: In member function 'bool ParsePDB::loadpdb(char*)': ParsePDB.cpp:1462:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1462 | fgets(oneline,255,filein); | ~~~~~^~~~~~~~~~~~~~~~~~~~ ParsePDB.cpp: In member function 'void ParsePDB::splitpdb()': ParsePDB.cpp:1524:55: warning: '%d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] 1524 | sprintf(tmpn,"%d",i); | ^~ ParsePDB.cpp:1524:54: note: directive argument in the range [10, 2147483647] 1524 | sprintf(tmpn,"%d",i); | ^~~~ In file included from /usr/include/stdio.h:970, from CommonPara.h:10, from ParsePDB.cpp:12: In function 'int sprintf(char*, const char*, ...)', inlined from 'void ParsePDB::splitpdb()' at ParsePDB.cpp:1524:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 11 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now ParsePDB.o ProteinSurface.o EDTSurf.o -o EDTSurf rm *.o make[1]: Leaving directory '/build/reproducible-path/edtsurf-0.2009' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/edtsurf/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'edtsurf-dbgsym' in '../edtsurf-dbgsym_0.2009-10_amd64.deb'. dpkg-deb: building package 'edtsurf' in '../edtsurf_0.2009-10_amd64.deb'. dpkg-genbuildinfo --build=binary -O../edtsurf_0.2009-10_amd64.buildinfo dpkg-genchanges --build=binary -O../edtsurf_0.2009-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2382007 and its subdirectories I: Current time: Tue Sep 16 01:36:13 -12 2025 I: pbuilder-time-stamp: 1758029773 Tue Sep 16 13:36:13 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Sep 16 13:36:13 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Sep 16 13:36:13 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Tue Sep 16 13:36:13 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-IW7VgP' ==================================================================================== Mon Oct 19 19:59:14 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 edtsurf forky /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU 0.2009-10" as arguments. Mon Oct 19 19:59:14 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-0Xxwwp1Z" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Oct 19 19:59:14 UTC 2026 I: Downloading source for forky/edtsurf=0.2009-10 Reading package lists... NOTICE: 'edtsurf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/edtsurf.git Please use: git clone https://salsa.debian.org/med-team/edtsurf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (dsc) [2026 B] Get:2 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (tar) [38.5 kB] Get:3 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (diff) [99.7 kB] Fetched 140 kB in 0s (4018 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'edtsurf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/edtsurf.git Please use: git clone https://salsa.debian.org/med-team/edtsurf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (dsc) [2026 B] Get:2 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (tar) [38.5 kB] Get:3 http://deb.debian.org/debian forky/main edtsurf 0.2009-10 (diff) [99.7 kB] Fetched 140 kB in 0s (4018 kB/s) Download complete and in download only mode ============================================================================= Re-Building edtsurf in forky on amd64 on ionos15-amd64 now. Date: Mon Oct 19 19:59:14 UTC 2026 Date UTC: Mon Oct 19 19:59:14 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/pbuilderrc_gNXe + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' edtsurf = debian-installer -o edtsurf = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' edtsurf = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/pbuilderrc_gNXe --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b2 --logfile b2/build.log edtsurf_0.2009-10.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 20 09:59:14 +14 2026 I: pbuilder-time-stamp: 1792439954 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [edtsurf_0.2009-10.dsc] I: copying [./edtsurf_0.2009.orig.tar.gz] I: copying [./edtsurf_0.2009-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./edtsurf_0.2009-10.dsc: no acceptable signature found dpkg-source: info: extracting edtsurf in edtsurf-0.2009 dpkg-source: info: unpacking edtsurf_0.2009.orig.tar.gz dpkg-source: info: unpacking edtsurf_0.2009-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying CFLAGS_missing_in_Makefile.patch dpkg-source: info: applying fix-use-of-unsigned-char.patch dpkg-source: info: applying fix_return_values.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 19 19:59 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=ddd7c0e0df94445da3bff118fe7fef81 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1851221 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/pbuilderrc_gNXe --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b2 --logfile b2/build.log edtsurf_0.2009-10.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Fetched 11.2 MB in 0s (77.1 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/edtsurf-0.2009/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../edtsurf_0.2009-10_source.changes dpkg-buildpackage: info: source package edtsurf dpkg-buildpackage: info: source version 0.2009-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/edtsurf-0.2009' dh_clean rm -f EDTSurf make[1]: Leaving directory '/build/reproducible-path/edtsurf-0.2009' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/edtsurf-0.2009' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ParsePDB.cpp -o ParsePDB.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ProteinSurface.cpp -o ProteinSurface.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c EDTSurf.cpp -o EDTSurf.o ParsePDB.cpp: In member function 'bool ParsePDB::loadpdb(char*)': ParsePDB.cpp:1462:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1462 | fgets(oneline,255,filein); | ~~~~~^~~~~~~~~~~~~~~~~~~~ ParsePDB.cpp: In member function 'void ParsePDB::splitpdb()': ParsePDB.cpp:1524:55: warning: '%d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] 1524 | sprintf(tmpn,"%d",i); | ^~ ParsePDB.cpp:1524:54: note: directive argument in the range [10, 2147483647] 1524 | sprintf(tmpn,"%d",i); | ^~~~ In file included from /usr/include/stdio.h:970, from CommonPara.h:10, from ParsePDB.cpp:12: In function 'int sprintf(char*, const char*, ...)', inlined from 'void ParsePDB::splitpdb()' at ParsePDB.cpp:1524:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 11 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now ParsePDB.o ProteinSurface.o EDTSurf.o -o EDTSurf rm *.o make[1]: Leaving directory '/build/reproducible-path/edtsurf-0.2009' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/edtsurf/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'edtsurf' in '../edtsurf_0.2009-10_amd64.deb'. dpkg-deb: building package 'edtsurf-dbgsym' in '../edtsurf-dbgsym_0.2009-10_amd64.deb'. dpkg-genbuildinfo --build=binary -O../edtsurf_0.2009-10_amd64.buildinfo dpkg-genchanges --build=binary -O../edtsurf_0.2009-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1851221 and its subdirectories I: Current time: Tue Oct 20 10:00:31 +14 2026 I: pbuilder-time-stamp: 1792440031 + false + set +x Mon Oct 19 20:00:31 UTC 2026 I: Signing ./b2/edtsurf_0.2009-10_amd64.buildinfo as edtsurf_0.2009-10_amd64.buildinfo.asc Mon Oct 19 20:00:31 UTC 2026 I: Signed ./b2/edtsurf_0.2009-10_amd64.buildinfo as ./b2/edtsurf_0.2009-10_amd64.buildinfo.asc Mon Oct 19 20:00:31 UTC 2026 - build #2 for edtsurf/forky/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Mon Oct 19 20:00:31 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-0Xxwwp1Z, removing. /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU: total 36 drwxrwxr-x 2 jenkins jenkins 4096 Sep 16 13:36 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 16 13:37 b2 -rw-rw-r-- 1 jenkins jenkins 2026 Jan 28 2021 edtsurf_0.2009-10.dsc -rw------- 1 jenkins jenkins 23484 Sep 16 13:36 rbuildlog.wtxLiml /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b1: total 420 -rw-r--r-- 1 jenkins jenkins 20063 Sep 16 13:36 build.log -rw-r--r-- 1 jenkins jenkins 105144 Sep 16 13:36 edtsurf-dbgsym_0.2009-10_amd64.deb -rw-r--r-- 1 jenkins jenkins 99696 Sep 16 13:36 edtsurf_0.2009-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2026 Sep 16 13:36 edtsurf_0.2009-10.dsc -rw-r--r-- 1 jenkins jenkins 4865 Sep 16 13:36 edtsurf_0.2009-10_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5747 Sep 16 13:36 edtsurf_0.2009-10_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1515 Sep 16 13:36 edtsurf_0.2009-10_amd64.changes -rw-r--r-- 1 jenkins jenkins 159144 Sep 16 13:36 edtsurf_0.2009-10_amd64.deb -rw-r--r-- 1 jenkins jenkins 1374 Sep 16 13:36 edtsurf_0.2009-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b2: total 424 -rw-rw-r-- 1 jenkins jenkins 21990 Sep 16 13:37 build.log -rw-r--r-- 1 jenkins jenkins 105144 Sep 16 13:37 edtsurf-dbgsym_0.2009-10_amd64.deb -rw-r--r-- 1 jenkins jenkins 99696 Sep 16 13:37 edtsurf_0.2009-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2026 Sep 16 13:37 edtsurf_0.2009-10.dsc -rw-rw-r-- 1 jenkins jenkins 4865 Sep 16 13:37 edtsurf_0.2009-10_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5747 Sep 16 13:37 edtsurf_0.2009-10_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1515 Sep 16 13:37 edtsurf_0.2009-10_amd64.changes -rw-r--r-- 1 jenkins jenkins 159144 Sep 16 13:37 edtsurf_0.2009-10_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1374 Sep 16 13:37 edtsurf_0.2009-10_source.changes Tue Sep 16 13:37:32 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Sep 16 13:37:32 UTC 2025 I: edtsurf_0.2009-10_amd64.changes: Format: 1.8 Date: Thu, 28 Jan 2021 16:50:25 +0100 Source: edtsurf Binary: edtsurf edtsurf-dbgsym Architecture: amd64 Version: 0.2009-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: edtsurf - triangulated mesh surfaces for protein structures Closes: 980441 Changes: edtsurf (0.2009-10) unstable; urgency=medium . * Team upload. * debian/rules: for i386 compile with -ffloat-store. Closes: #980441 * debian/test/run-unit-test: run all tests on i386 * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 74e488a21ebbcf729b28d1376e13b83b16b783b0 105144 edtsurf-dbgsym_0.2009-10_amd64.deb 381af8858945d93bb45d172b4ff3d1408c363aac 4865 edtsurf_0.2009-10_amd64.buildinfo cd1cc6f6ba1c2675d7544b9f1e4781e3bd9e2c74 159144 edtsurf_0.2009-10_amd64.deb Checksums-Sha256: e378802d1674fc84b10ccc694a5be4bbc0bd73a30a53f62b315eedfd76f927b8 105144 edtsurf-dbgsym_0.2009-10_amd64.deb c426a4317ca24d0e2121b5e3e4e1583023fddce34e764fb76fde670a29ea4643 4865 edtsurf_0.2009-10_amd64.buildinfo eb3919a530d2f5481b7cb1e80961f4cd15803e148461170296d321c715691609 159144 edtsurf_0.2009-10_amd64.deb Files: 5dafcad07aff00fce26b1d8c6268865b 105144 debug optional edtsurf-dbgsym_0.2009-10_amd64.deb a9b45587baea0716aace44b19187a0f4 4865 science optional edtsurf_0.2009-10_amd64.buildinfo dc72a573a9384a2986b20c999fb09e21 159144 science optional edtsurf_0.2009-10_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/edtsurf_0.2009-10.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/edtsurf_0.2009-10.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/edtsurf_0.2009-10.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/edtsurf_0.2009-10.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/edtsurf_0.2009-10_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/edtsurf_0.2009-10.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-16 13:36:13.538615829 +0000 +++ b2/build.log 2025-09-16 13:37:32.402710122 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Sep 16 01:33:19 -12 2025 -I: pbuilder-time-stamp: 1758029599 +I: Current time: Tue Oct 20 09:59:14 +14 2026 +I: pbuilder-time-stamp: 1792439954 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2382007/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 19 19:59 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1093d63b28cc4a5881b987356ca4be0d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2382007' - PS1='# ' - PS2='> ' + INVOCATION_ID=ddd7c0e0df94445da3bff118fe7fef81 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1851221 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/pbuilderrc_hPkM --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b1 --logfile b1/build.log edtsurf_0.2009-10.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/pbuilderrc_gNXe --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b2 --logfile b2/build.log edtsurf_0.2009-10.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2382007/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -138,7 +170,7 @@ Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] -Fetched 11.2 MB in 3s (3256 kB/s) +Fetched 11.2 MB in 0s (77.1 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -269,7 +301,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/edtsurf-0.2009/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../edtsurf_0.2009-10_source.changes +I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/edtsurf-0.2009/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../edtsurf_0.2009-10_source.changes dpkg-buildpackage: info: source package edtsurf dpkg-buildpackage: info: source version 0.2009-10 dpkg-buildpackage: info: source distribution unstable @@ -290,7 +326,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j40 "INSTALL=install --strip-program=true" + make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/edtsurf-0.2009' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ParsePDB.cpp -o ParsePDB.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ProteinSurface.cpp -o ProteinSurface.o @@ -344,8 +380,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'edtsurf-dbgsym' in '../edtsurf-dbgsym_0.2009-10_amd64.deb'. dpkg-deb: building package 'edtsurf' in '../edtsurf_0.2009-10_amd64.deb'. +dpkg-deb: building package 'edtsurf-dbgsym' in '../edtsurf-dbgsym_0.2009-10_amd64.deb'. dpkg-genbuildinfo --build=binary -O../edtsurf_0.2009-10_amd64.buildinfo dpkg-genchanges --build=binary -O../edtsurf_0.2009-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -353,12 +389,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1851221/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2382007 and its subdirectories -I: Current time: Tue Sep 16 01:36:13 -12 2025 -I: pbuilder-time-stamp: 1758029773 +I: removing directory /srv/workspace/pbuilder/1851221 and its subdirectories +I: Current time: Tue Oct 20 10:00:31 +14 2026 +I: pbuilder-time-stamp: 1792440031 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/edtsurf_0.2009-10.diff: 67.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/edtsurf_0.2009-10.diff.gz b2/build.log: 72.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 73.8% -- replaced with stdout Tue Sep 16 13:37:33 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_edtsurf_forky_amd64_1758029853 + touch /var/log/reproducible-builds/diffoscope_stamp_edtsurf_forky_amd64_1758029853 + RESULT=0 + systemd-run '--description=diffoscope on edtsurf/0.2009-10 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_27-71144 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU --run-session -c jenkins-reproducible-forky-diffoscope-b284d9aa-2d1d-47a5-a384-e4135c5be0c5 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/dbd-tmp-AcdQYqI ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/edtsurf_0.2009-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/edtsurf_0.2009-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/edtsurf_0.2009-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b1/edtsurf_0.2009-10_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b2/edtsurf_0.2009-10_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_27-71144.service; invocation ID: b92c1c355cf54943ac4fb7352ca2a0d4 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/edtsurf_0.2009-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/edtsurf_0.2009-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/edtsurf_0.2009-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b1/edtsurf_0.2009-10_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.IzAStiZU/b2/edtsurf_0.2009-10_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.002s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 204ms CPU time consumed: 173ms Memory peak: 18.7M (swap: 0B) _ _ __ ___ __| | |_ ___ _ _ _ __ / _| / _ \/ _` | __/ __| | | | '__| |_ | __/ (_| | |_\__ \ |_| | | | _| \___|\__,_|\__|___/\__,_|_| |_| Tue Sep 16 13:46:56 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Tue Sep 16 13:46:56 UTC 2025 I: edtsurf from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-16 13:46:57] INFO: Starting at 2025-09-16 13:46:57.139459 [2025-09-16 13:46:57] INFO: Generating the pages of 1 package(s) [2025-09-16 13:46:57] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/edtsurf didn't produce a buildlog, even though it has been built. [2025-09-16 13:46:57] INFO: Finished at 2025-09-16 13:46:57.785945, took: 0:00:00.646493 Tue Sep 16 13:46:57 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/edtsurf.html Tue Sep 16 13:46:57 UTC 2025 I: Removing signed edtsurf_0.2009-10_amd64.buildinfo.asc files: removed './b1/edtsurf_0.2009-10_amd64.buildinfo.asc' removed './b2/edtsurf_0.2009-10_amd64.buildinfo.asc' 1758030418 amd64 forky edtsurf Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/edtsurf_0.2009-10.rbuild.log: 69.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/edtsurf_0.2009-10.rbuild.log.gz [2025-09-16 13:46:58] INFO: Starting at 2025-09-16 13:46:58.687066 [2025-09-16 13:46:59] INFO: Generating the pages of 1 package(s) [2025-09-16 13:46:59] INFO: Finished at 2025-09-16 13:46:59.278199, took: 0:00:00.591141 All cleanup done. Tue Sep 16 13:46:59 UTC 2025 - total duration: 0h 14m 2s. Tue Sep 16 13:46:59 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ebwbvLkI, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 14min 5.283s CPU time consumed: 4.136s Memory peak: 39.2M (swap: 0B)