Running as unit: rb-build-amd64_27-75457.service; invocation ID: c675f2a94d184c40a8da3a62b834b079 ==================================================================================== Fri Oct 31 01:32:48 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_27) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Fri Oct 31 01:32:48 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-2L84c2F8" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 01:32:48 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 01:32:48 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-zcvQnA' Fri Oct 31 01:32:51 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 01:32:51 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-A5OGFh' ok, let's check if dialign-t is building anywhere yet… ok, dialign-t is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of dialign-t in forky on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Fri Oct 31 01:33:04 UTC 2025 I: starting to build dialign-t/forky/amd64 on jenkins on '2025-10-31 01:32' Fri Oct 31 01:33:04 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/75457/console.log 1761874384 amd64 forky dialign-t Fri Oct 31 01:33:04 UTC 2025 I: Downloading source for forky/dialign-t=1.0.2-15 --2025-10-31 01:33:04-- http://deb.debian.org/debian/pool/main/d/dialign-t/dialign-t_1.0.2-15.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2201 (2.1K) [text/prs.lines.tag] Saving to: ‘dialign-t_1.0.2-15.dsc’ 0K .. 100% 274M=0s 2025-10-31 01:33:04 (274 MB/s) - ‘dialign-t_1.0.2-15.dsc’ saved [2201/2201] --2025-10-31 01:33:04-- http://deb.debian.org/debian/pool/main/d/dialign-t/dialign-t_1.0.2-15.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2201 (2.1K) [text/prs.lines.tag] Saving to: ‘dialign-t_1.0.2-15.dsc’ 0K .. 100% 274M=0s 2025-10-31 01:33:04 (274 MB/s) - ‘dialign-t_1.0.2-15.dsc’ saved [2201/2201] Fri Oct 31 01:33:04 UTC 2025 I: dialign-t_1.0.2-15.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dialign-t Binary: dialign-tx, dialign-tx-data Architecture: any all Version: 1.0.2-15 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: https://dialign-tx.gobics.de/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dialign-t Vcs-Git: https://salsa.debian.org/med-team/dialign-t.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: dialign-tx deb science optional arch=any dialign-tx-data deb science optional arch=all Checksums-Sha1: 4d4e50070f019b88078105ec21f22b1005a010af 1765296 dialign-t_1.0.2.orig.tar.gz a950f177e538b9c53b3f0cd74182bf3d90b254e4 19100 dialign-t_1.0.2-15.debian.tar.xz Checksums-Sha256: fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f 1765296 dialign-t_1.0.2.orig.tar.gz 3de80c08891afe5afa70157f281db5a3044514c284f82dc06269e6a48a7019fd 19100 dialign-t_1.0.2-15.debian.tar.xz Files: 8ccfb1d91136157324d1e513f184ca29 1765296 dialign-t_1.0.2.orig.tar.gz cb5f6d9ca6851fb26535b344f69a15c4 19100 dialign-t_1.0.2-15.debian.tar.xz Dgit: ccf566831e0b222de7e70408cbe1d9b07a30609b debian archive/debian/1.0.2-15 https://git.dgit.debian.org/dialign-t -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmX1uWcUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq+bBAAgECaWdm0vRTqZv1zeAg87RQ0zAuK 5vZzKCgpCRtMQu5Y41zzi4O0zbQcI06hkvQk0lWQsS7xyZneZfZm7QA51NGBwTPR mvuEQSsTwIMJF3TzKDz+ZtM4PBR/Q8LYh0JseJkLOC+NYdyd1TPrEgd9v8U6rAwv yE4X9ZbQzIfbIfwWC6nhd7bxZVq4GDgiJa+/AdW/oq3co9qp9dodxKGv75OFGpt4 vPTNtS6nqUr0MZZdROExWitPYb61YP/jrn1K/OjRzaWr3cLcympculL6PTdU9BvC NIzHjRrjvCycOSZMBR9mR5st96XYjxY8N+ESsLik//eJJwlV15rgj/JYgFZjtxRh Id4w9eSaZ4jjYgf9tfgaAC4RKVKZtyawkeHYjxOTIPdlVn14IGETIHCcWsWgneRO 1SMAVP/VakNPP9TmY0Utj/k2G4FgIy83FC4UDiRv3verVGraoh6ffRDKXMpXf0/X b5FBVN0lkMXC0g2vPogDwQNkXrveSGxVVR7dGQ0/UCDlNidzsYX/31yddU3Ty86/ 1teyezxMtHk2e/d38bh+N2BsO1ciqzaclpQT0ncsFA8lncv+fc6Z1+nPszomJtSJ piW1qYUimasSkhnFq/C/tCD6r3Qtln8II9UH9Bb8Px5ntjpZ9nXCR+//wiDLeIiN XBXp3P0cRHwbWpc= =E+nq -----END PGP SIGNATURE----- Fri Oct 31 01:33:04 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 01:33:04 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri Oct 31 01:33:04 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri Oct 31 01:33:04 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 01:33:04 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-OBgBSX' ==================================================================================== Fri Oct 31 01:33:09 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 dialign-t forky /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF 1.0.2-15" as arguments. Fri Oct 31 01:33:09 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-qYl2aJbE" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 01:33:09 UTC 2025 I: Downloading source for forky/dialign-t=1.0.2-15 Reading package lists... NOTICE: 'dialign-t' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dialign-t.git Please use: git clone https://salsa.debian.org/med-team/dialign-t.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1787 kB of source archives. Get:1 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (dsc) [2201 B] Get:2 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (tar) [1765 kB] Get:3 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (diff) [19.1 kB] Fetched 1787 kB in 0s (33.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'dialign-t' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dialign-t.git Please use: git clone https://salsa.debian.org/med-team/dialign-t.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1787 kB of source archives. Get:1 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (dsc) [2201 B] Get:2 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (tar) [1765 kB] Get:3 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (diff) [19.1 kB] Fetched 1787 kB in 0s (33.6 MB/s) Download complete and in download only mode ============================================================================= Building dialign-t in forky on amd64 on ionos11-amd64 now. Date: Fri Oct 31 01:33:10 UTC 2025 Date UTC: Fri Oct 31 01:33:10 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 13:33:10 -12 2025 I: pbuilder-time-stamp: 1761874390 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign-t_1.0.2-15.dsc] I: copying [./dialign-t_1.0.2.orig.tar.gz] I: copying [./dialign-t_1.0.2-15.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./dialign-t_1.0.2-15.dsc: no acceptable signature found dpkg-source: info: extracting dialign-t in dialign-t-1.0.2 dpkg-source: info: unpacking dialign-t_1.0.2.orig.tar.gz dpkg-source: info: unpacking dialign-t_1.0.2-15.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying prevent_enforcing_arch.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying consistent_declarations.patch dpkg-source: info: applying clang-ftbfs.diff dpkg-source: info: applying spelling.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying fix-declarations.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/514472/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='23390d53985c4dbe954f167cf4a09bc9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='514472' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/pbuilderrc_SuGf --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b1 --logfile b1/build.log dialign-t_1.0.2-15.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/514472/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 42.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Fetched 11.3 MB in 5s (2287 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign-t_1.0.2-15_source.changes dpkg-buildpackage: info: source package dialign-t dpkg-buildpackage: info: source version 1.0.2-15 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source cd source && make -j40 clean make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' dh_autoreconf_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source debian/rules binary dh binary --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_update_autotools_config -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_autoreconf -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_configure -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_build -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source cd source && make -j40 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o museq.o museq.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o parameters.o parameters.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o io.o io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o diag.o diag.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o alig.o alig.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o assemble.o assemble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o prob.o prob.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o orf.o orf.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o translate.o translate.c io.c: In function 'read_anchors': io.c:535:23: warning: format '%li' expects argument of type 'long int *', but argument 3 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:27: warning: format '%li' expects argument of type 'long int *', but argument 4 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:31: warning: format '%li' expects argument of type 'long int *', but argument 5 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:35: warning: format '%li' expects argument of type 'long int *', but argument 6 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:39: warning: format '%li' expects argument of type 'long int *', but argument 7 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c: In function 'read_scr_matrix': io.c:270:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 270 | fscanf( fp, "%i", &is); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:282:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | fscanf(fp, "%s\n", rline); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function 'read_diag_prob_dist': io.c:371:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ alig.c:13:20: warning: inline function 'calc_weight' declared but never defined 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, | ^~~~~~~~~~~ assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); | ^~~~~~~~ assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, | ^~~~~~~~~~~~~~~~~ assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ diag.c:1456:17: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); | ^~~~~~~~~~~~~~~~ rm -f ./museq gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm -Wl,-z,relro -Wl,-z,now mv museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' dh_auto_test -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_prep -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_install -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_install -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installdocs -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installchangelogs -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installman -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installsystemduser -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_perl -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_link -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_strip_nondeterminism -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_compress -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2' dh_fixperms chmod 644 /build/reproducible-path/dialign-t-1.0.2/debian/dialign-tx-data/usr/share/dialign-tx/* make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2' dh_fixperms -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source -Ndialign-tx-data dh_missing -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_dwz -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_strip -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_makeshlibs -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_shlibdeps -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installdeb -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_gencontrol -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_md5sums -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_builddeb -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dpkg-deb: building package 'dialign-tx-dbgsym' in '../dialign-tx-dbgsym_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx-data' in '../dialign-tx-data_1.0.2-15_all.deb'. dpkg-genbuildinfo --build=binary -O../dialign-t_1.0.2-15_amd64.buildinfo dpkg-genchanges --build=binary -O../dialign-t_1.0.2-15_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/514472 and its subdirectories I: Current time: Thu Oct 30 13:36:17 -12 2025 I: pbuilder-time-stamp: 1761874577 Fri Oct 31 01:36:17 UTC 2025 I: Signing ./b1/dialign-t_1.0.2-15_amd64.buildinfo as dialign-t_1.0.2-15_amd64.buildinfo.asc Fri Oct 31 01:36:17 UTC 2025 I: Signed ./b1/dialign-t_1.0.2-15_amd64.buildinfo as ./b1/dialign-t_1.0.2-15_amd64.buildinfo.asc Fri Oct 31 01:36:17 UTC 2025 - build #1 for dialign-t/forky/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 01:36:17 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-qYl2aJbE, removing. /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 01:36 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 01:33 b2 -rw-rw-r-- 1 jenkins jenkins 2201 Mar 16 2024 dialign-t_1.0.2-15.dsc -rw------- 1 jenkins jenkins 3316 Oct 31 01:33 rbuildlog.NXFjrj9 /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b1: total 1176 -rw-r--r-- 1 jenkins jenkins 27915 Oct 31 01:36 build.log -rw-r--r-- 1 jenkins jenkins 19100 Oct 31 01:36 dialign-t_1.0.2-15.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2201 Oct 31 01:36 dialign-t_1.0.2-15.dsc -rw-r--r-- 1 jenkins jenkins 5073 Oct 31 01:36 dialign-t_1.0.2-15_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5955 Oct 31 01:36 dialign-t_1.0.2-15_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1861 Oct 31 01:36 dialign-t_1.0.2-15_amd64.changes -rw-r--r-- 1 jenkins jenkins 1346 Oct 31 01:36 dialign-t_1.0.2-15_source.changes -rw-r--r-- 1 jenkins jenkins 862500 Oct 31 01:36 dialign-tx-data_1.0.2-15_all.deb -rw-r--r-- 1 jenkins jenkins 170808 Oct 31 01:36 dialign-tx-dbgsym_1.0.2-15_amd64.deb -rw-r--r-- 1 jenkins jenkins 88120 Oct 31 01:36 dialign-tx_1.0.2-15_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b2: total 0 Fri Oct 31 01:36:20 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 13:33:10 -12 2025 I: pbuilder-time-stamp: 1761874390 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign-t_1.0.2-15.dsc] I: copying [./dialign-t_1.0.2.orig.tar.gz] I: copying [./dialign-t_1.0.2-15.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./dialign-t_1.0.2-15.dsc: no acceptable signature found dpkg-source: info: extracting dialign-t in dialign-t-1.0.2 dpkg-source: info: unpacking dialign-t_1.0.2.orig.tar.gz dpkg-source: info: unpacking dialign-t_1.0.2-15.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying prevent_enforcing_arch.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying consistent_declarations.patch dpkg-source: info: applying clang-ftbfs.diff dpkg-source: info: applying spelling.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying fix-declarations.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/514472/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='23390d53985c4dbe954f167cf4a09bc9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='514472' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/pbuilderrc_SuGf --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b1 --logfile b1/build.log dialign-t_1.0.2-15.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/514472/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 42.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Fetched 11.3 MB in 5s (2287 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign-t_1.0.2-15_source.changes dpkg-buildpackage: info: source package dialign-t dpkg-buildpackage: info: source version 1.0.2-15 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source cd source && make -j40 clean make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' dh_autoreconf_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source debian/rules binary dh binary --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_update_autotools_config -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_autoreconf -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_configure -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_build -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source cd source && make -j40 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o museq.o museq.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o parameters.o parameters.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o io.o io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o diag.o diag.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o alig.o alig.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o assemble.o assemble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o prob.o prob.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o orf.o orf.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o translate.o translate.c io.c: In function 'read_anchors': io.c:535:23: warning: format '%li' expects argument of type 'long int *', but argument 3 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:27: warning: format '%li' expects argument of type 'long int *', but argument 4 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:31: warning: format '%li' expects argument of type 'long int *', but argument 5 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:35: warning: format '%li' expects argument of type 'long int *', but argument 6 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:39: warning: format '%li' expects argument of type 'long int *', but argument 7 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c: In function 'read_scr_matrix': io.c:270:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 270 | fscanf( fp, "%i", &is); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:282:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | fscanf(fp, "%s\n", rline); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function 'read_diag_prob_dist': io.c:371:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ alig.c:13:20: warning: inline function 'calc_weight' declared but never defined 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, | ^~~~~~~~~~~ assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); | ^~~~~~~~ assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, | ^~~~~~~~~~~~~~~~~ assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ diag.c:1456:17: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); | ^~~~~~~~~~~~~~~~ rm -f ./museq gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm -Wl,-z,relro -Wl,-z,now mv museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' dh_auto_test -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_prep -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_install -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_install -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installdocs -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installchangelogs -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installman -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installsystemduser -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_perl -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_link -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_strip_nondeterminism -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_compress -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2' dh_fixperms chmod 644 /build/reproducible-path/dialign-t-1.0.2/debian/dialign-tx-data/usr/share/dialign-tx/* make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2' dh_fixperms -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source -Ndialign-tx-data dh_missing -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_dwz -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_strip -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_makeshlibs -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_shlibdeps -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installdeb -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_gencontrol -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_md5sums -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_builddeb -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dpkg-deb: building package 'dialign-tx-dbgsym' in '../dialign-tx-dbgsym_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx-data' in '../dialign-tx-data_1.0.2-15_all.deb'. dpkg-genbuildinfo --build=binary -O../dialign-t_1.0.2-15_amd64.buildinfo dpkg-genchanges --build=binary -O../dialign-t_1.0.2-15_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/514472 and its subdirectories I: Current time: Thu Oct 30 13:36:17 -12 2025 I: pbuilder-time-stamp: 1761874577 Fri Oct 31 01:36:23 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri Oct 31 01:36:23 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri Oct 31 01:36:23 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 01:36:23 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-KLV0RO' ==================================================================================== Fri Oct 31 01:36:23 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 dialign-t forky /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF 1.0.2-15" as arguments. Fri Oct 31 01:36:23 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-ai78dN7R" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 01:36:23 UTC 2025 I: Downloading source for forky/dialign-t=1.0.2-15 Reading package lists... NOTICE: 'dialign-t' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dialign-t.git Please use: git clone https://salsa.debian.org/med-team/dialign-t.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1787 kB of source archives. Get:1 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (dsc) [2201 B] Get:2 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (tar) [1765 kB] Get:3 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (diff) [19.1 kB] Fetched 1787 kB in 0s (59.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'dialign-t' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dialign-t.git Please use: git clone https://salsa.debian.org/med-team/dialign-t.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1787 kB of source archives. Get:1 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (dsc) [2201 B] Get:2 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (tar) [1765 kB] Get:3 http://deb.debian.org/debian forky/main dialign-t 1.0.2-15 (diff) [19.1 kB] Fetched 1787 kB in 0s (59.7 MB/s) Download complete and in download only mode ============================================================================= Re-Building dialign-t in forky on amd64 on ionos15-amd64 now. Date: Fri Oct 31 01:36:25 UTC 2025 Date UTC: Fri Oct 31 01:36:25 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/pbuilderrc_fLAE + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' dialign-t = debian-installer -o dialign-t = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' dialign-t = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/pbuilderrc_fLAE --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b2 --logfile b2/build.log dialign-t_1.0.2-15.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 15:36:25 +14 2025 I: pbuilder-time-stamp: 1761874585 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] tar: ./build: time stamp 2026-11-29 07:50:53 is 34013667.059952001 s in the future tar: ./dev/ptmx: time stamp 2026-11-29 07:46:28 is 34013402.059736916 s in the future tar: ./dev/zero: time stamp 2026-11-29 07:46:28 is 34013402.059598075 s in the future tar: ./dev/null: time stamp 2026-11-29 07:46:28 is 34013402.059545765 s in the future tar: ./dev/console: time stamp 2026-11-29 07:46:28 is 34013402.059470257 s in the future tar: ./dev/random: time stamp 2026-11-29 07:46:28 is 34013402.059424699 s in the future tar: ./dev/full: time stamp 2026-11-29 07:46:28 is 34013402.059383139 s in the future tar: ./dev/pts: time stamp 2026-11-29 07:46:28 is 34013402.059283456 s in the future tar: ./dev/tty: time stamp 2026-11-29 07:46:28 is 34013402.059196166 s in the future tar: ./dev/urandom: time stamp 2026-11-29 07:46:28 is 34013402.059145061 s in the future tar: ./etc/terminfo: time stamp 2026-11-29 07:46:38 is 34013412.058874788 s in the future tar: ./etc/opt: time stamp 2026-11-29 07:46:28 is 34013402.05735068 s in the future tar: ./etc/security/opasswd: time stamp 2026-11-29 07:46:40 is 34013414.056996752 s in the future tar: ./etc/security: time stamp 2026-11-29 07:46:40 is 34013414.056512734 s in the future tar: ./etc/shadow: time stamp 2026-11-29 07:51:36 is 34013710.05630772 s in the future tar: ./etc/cron.daily: time stamp 2026-11-30 23:31:29 is 34156503.056084271 s in the future tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2026-11-29 07:52:40 is 34013774.055842955 s in the future tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2026-11-29 07:50:53 is 34013667.055763808 s in the future tar: ./etc/apt/apt.conf.d: time stamp 2026-11-30 23:31:29 is 34156503.055659339 s in the future tar: ./etc/apt/sources.list: time stamp 2026-11-29 07:52:40 is 34013774.055556011 s in the future tar: ./etc/apt/trusted.gpg.d: time stamp 2026-11-29 07:50:07 is 34013621.054858043 s in the future tar: ./etc/apt: time stamp 2026-11-29 07:52:40 is 34013774.054761791 s in the future tar: ./etc/fstab: time stamp 2026-11-29 07:46:28 is 34013402.054699144 s in the future tar: ./etc/update-motd.d: time stamp 2026-11-29 07:46:39 is 34013413.05414992 s in the future tar: ./etc/ld.so.conf.d: time stamp 2026-11-29 07:52:00 is 34013734.053847729 s in the future tar: ./etc/gshadow: time stamp 2026-11-29 07:51:36 is 34013710.053643003 s in the future tar: ./etc/shells: time stamp 2026-11-29 07:46:39 is 34013413.05354315 s in the future tar: ./etc/default: time stamp 2026-11-29 07:51:35 is 34013709.053221385 s in the future tar: ./etc/group: time stamp 2026-11-29 07:51:36 is 34013710.053095341 s in the future tar: ./etc/ld.so.cache: time stamp 2026-12-02 23:31:27 is 34329301.052899448 s in the future tar: ./etc/.pwd.lock: time stamp 2026-11-29 07:51:36 is 34013710.052791671 s in the future tar: ./etc/skel: time stamp 2026-11-29 07:46:39 is 34013413.052576335 s in the future tar: ./etc/group-: time stamp 2026-11-29 07:46:28 is 34013402.052459232 s in the future tar: ./etc/subuid: time stamp 2026-11-29 07:46:28 is 34013402.052400914 s in the future tar: ./etc/logrotate.d: time stamp 2026-11-30 23:31:29 is 34156503.051744973 s in the future tar: ./etc/pam.d/common-session: time stamp 2026-11-29 07:46:40 is 34013414.051606656 s in the future tar: ./etc/pam.d/common-password: time stamp 2026-11-29 07:46:40 is 34013414.051520809 s in the future tar: ./etc/pam.d/common-account: time stamp 2026-11-29 07:46:40 is 34013414.051394462 s in the future tar: ./etc/pam.d/common-session-noninteractive: time stamp 2026-11-29 07:46:40 is 34013414.051274667 s in the future tar: ./etc/pam.d/common-auth: time stamp 2026-11-29 07:46:40 is 34013414.051136768 s in the future tar: ./etc/pam.d: time stamp 2026-12-02 20:29:29 is 34318383.050898004 s in the future tar: ./etc/subgid: time stamp 2026-11-29 07:46:28 is 34013402.050787722 s in the future tar: ./etc/passwd-: time stamp 2026-11-29 07:46:28 is 34013402.050681261 s in the future tar: ./etc/environment: time stamp 2026-11-29 07:46:40 is 34013414.050557647 s in the future tar: ./etc/perl/Net: time stamp 2026-11-29 07:50:24 is 34013638.050417083 s in the future tar: ./etc/perl: time stamp 2026-11-29 07:50:02 is 34013616.050399936 s in the future tar: ./etc/selinux: time stamp 2026-11-29 07:51:27 is 34013701.050222865 s in the future tar: ./etc/kernel: time stamp 2026-11-29 07:46:41 is 34013415.050092465 s in the future tar: ./etc/passwd: time stamp 2026-11-29 07:51:36 is 34013710.050013114 s in the future tar: ./etc/dpkg/origins/default: time stamp 2026-11-29 07:46:28 is 34013402.049789488 s in the future tar: ./etc/dpkg/origins: time stamp 2026-11-29 07:46:39 is 34013413.049694183 s in the future tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2026-11-29 07:52:40 is 34013774.04945024 s in the future tar: ./etc/dpkg/dpkg.cfg.d: time stamp 2026-11-29 07:52:40 is 34013774.049419317 s in the future tar: ./etc/dpkg: time stamp 2026-11-29 07:50:27 is 34013641.049400385 s in the future tar: ./media: time stamp 2026-11-29 07:46:28 is 34013402.049122776 s in the future tar: ./mnt: time stamp 2026-11-29 07:46:28 is 34013402.04905339 s in the future tar: ./opt: time stamp 2026-11-29 07:46:28 is 34013402.049003915 s in the future tar: ./root: time stamp 2026-11-29 07:46:28 is 34013402.048820935 s in the future tar: ./run/lock: time stamp 2026-11-29 07:46:28 is 34013402.048665345 s in the future tar: ./srv: time stamp 2026-11-29 07:46:28 is 34013402.048534759 s in the future tar: ./usr/share/base-passwd: time stamp 2026-11-29 07:46:31 is 34013405.048161911 s in the future tar: ./usr/share/terminfo/a: time stamp 2026-11-29 07:46:37 is 34013411.04800632 s in the future tar: ./usr/share/terminfo/p: time stamp 2026-11-29 07:46:37 is 34013411.047884665 s in the future tar: ./usr/share/terminfo/E: time stamp 2026-11-29 07:46:37 is 34013411.047701784 s in the future tar: ./usr/share/terminfo/s: time stamp 2026-11-29 07:46:37 is 34013411.047236673 s in the future tar: ./usr/share/terminfo/h: time stamp 2026-11-29 07:46:37 is 34013411.047128483 s in the future tar: ./usr/share/terminfo/d: time stamp 2026-11-29 07:46:37 is 34013411.047017644 s in the future tar: ./usr/share/terminfo/l: time stamp 2026-11-29 07:46:37 is 34013411.046881865 s in the future tar: ./usr/share/terminfo/m: time stamp 2026-11-29 07:46:37 is 34013411.046604144 s in the future tar: ./usr/share/terminfo/c: time stamp 2026-11-29 07:46:37 is 34013411.046443716 s in the future tar: ./usr/share/terminfo/v: time stamp 2026-11-29 07:46:37 is 34013411.046184391 s in the future tar: ./usr/share/terminfo/w: time stamp 2026-11-29 07:46:37 is 34013411.04603628 s in the future tar: ./usr/share/terminfo/x: time stamp 2026-11-29 07:46:37 is 34013411.045563421 s in the future tar: ./usr/share/terminfo/t: time stamp 2026-11-29 07:46:37 is 34013411.045387638 s in the future tar: ./usr/share/terminfo/r: time stamp 2026-11-29 07:46:37 is 34013411.045071267 s in the future tar: ./usr/share/gdb/auto-load/usr/lib/x86_64-linux-gnu: time stamp 2026-12-02 23:31:17 is 34329291.044738027 s in the future tar: ./usr/share/gdb/auto-load/usr/lib: time stamp 2026-11-29 07:47:59 is 34013493.044709822 s in the future tar: ./usr/share/gdb/auto-load/usr: time stamp 2026-11-29 07:47:59 is 34013493.0446937 s in the future tar: 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tar: ./usr/share/man/fr/man7: time stamp 2026-11-30 23:31:29 is 34156503.039448589 s in the future tar: ./usr/share/man/fr/man5: time stamp 2026-11-30 23:31:29 is 34156503.033581927 s in the future tar: ./usr/share/man/fi/man1: time stamp 2026-11-29 07:51:34 is 34013708.033218427 s in the future tar: ./usr/share/man/id/man8: time stamp 2026-11-29 07:51:34 is 34013708.03259285 s in the future tar: ./usr/share/man/id/man1: time stamp 2026-11-29 07:51:34 is 34013708.032462351 s in the future tar: ./usr/share/man/id: time stamp 2026-11-29 07:51:34 is 34013708.032441504 s in the future tar: ./usr/share/man/uk/man8: time stamp 2026-11-29 07:51:34 is 34013708.031573213 s in the future tar: ./usr/share/man/uk/man1: time stamp 2026-11-29 07:51:34 is 34013708.030870023 s in the future tar: ./usr/share/man/uk/man5: time stamp 2026-11-29 07:51:34 is 34013708.03057551 s in the future tar: ./usr/share/man/uk: time stamp 2026-11-29 07:51:34 is 34013708.030555822 s in the future tar: ./usr/share/man/pt/man7: time stamp 2026-11-30 23:31:29 is 34156503.030329616 s in the future tar: ./usr/share/man/pt/man8: time stamp 2026-11-30 23:31:29 is 34156503.029341435 s in the future tar: ./usr/share/man/pt/man1: time stamp 2026-11-30 23:31:29 is 34156503.027322723 s in the future tar: ./usr/share/man/pt/man5: time stamp 2026-11-30 23:31:29 is 34156503.025531354 s in the future tar: ./usr/share/man/pt: time stamp 2026-11-29 07:46:41 is 34013415.025493952 s in the future tar: ./usr/share/man/sr/man1: time stamp 2026-11-29 07:50:06 is 34013620.025045391 s in the future tar: ./usr/share/man/sr: time stamp 2026-11-29 07:50:06 is 34013620.025022516 s in the future tar: ./usr/share/man/nl/man7: time stamp 2026-11-30 23:31:29 is 34156503.024812376 s in the future tar: ./usr/share/man/nl/man8: time stamp 2026-11-30 23:31:29 is 34156503.024077364 s in the future tar: ./usr/share/man/nl/man1: time stamp 2026-11-30 23:31:29 is 34156503.021682685 s in the future tar: 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34013701.633786364 s in the future tar: ./usr/share/man/ja/man8: time stamp 2026-11-30 23:31:29 is 34156496.633762654 s in the future tar: ./usr/share/man/ja: time stamp 2026-11-29 07:46:27 is 34013394.633741169 s in the future tar: ./usr/share/man/gl/man8: time stamp 2026-11-29 07:52:01 is 34013728.633719042 s in the future tar: ./usr/share/man/gl: time stamp 2026-11-29 07:51:39 is 34013706.63369761 s in the future tar: ./usr/share/man/pl/man1: time stamp 2026-11-29 07:51:34 is 34013701.633674049 s in the future tar: ./usr/share/man/pl/man8: time stamp 2026-11-30 23:31:29 is 34156496.633649675 s in the future tar: ./usr/share/man/pl: time stamp 2026-11-29 07:46:27 is 34013394.633628418 s in the future tar: ./usr/share/man/man1: time stamp 2026-12-02 23:31:24 is 34329291.633604496 s in the future tar: ./usr/share/man/man8: time stamp 2026-12-02 20:29:29 is 34318376.63358028 s in the future tar: ./usr/share/man/de/man1: time stamp 2026-11-30 23:31:29 is 34156496.633556272 s in the future tar: ./usr/share/man/de/man8: time stamp 2026-11-30 23:31:29 is 34156496.633532242 s in the future tar: ./usr/share/man/de: time stamp 2026-11-29 07:46:41 is 34013408.633511711 s in the future tar: ./usr/share/man/es/man1: time stamp 2026-11-29 07:52:00 is 34013727.633485748 s in the future tar: ./usr/share/man/es/man8: time stamp 2026-11-30 23:31:29 is 34156496.633460969 s in the future tar: ./usr/share/man/es: time stamp 2026-11-29 07:46:27 is 34013394.633439512 s in the future tar: ./usr/share/man/sv/man1: time stamp 2026-11-29 07:52:00 is 34013727.633414657 s in the future tar: ./usr/share/man/sv: time stamp 2026-11-29 07:46:47 is 34013414.633390988 s in the future tar: ./usr/share/man/man7: time stamp 2026-11-30 23:31:29 is 34156496.633366252 s in the future tar: ./usr/share/man/fi/man8: time stamp 2026-11-29 07:52:01 is 34013728.633344713 s in the future tar: ./usr/share/man/fi: time stamp 2026-11-29 07:51:39 is 34013706.633323086 s in the future tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 23:31:29 is 34156496.633299118 s in the future tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 23:31:29 is 34156496.633273509 s in the future tar: ./usr/share/man/fr: time stamp 2026-11-29 07:46:41 is 34013408.633253259 s in the future tar: ./usr/share/man: time stamp 2026-11-29 07:51:39 is 34013706.633233827 s in the future tar: ./usr/share: time stamp 2026-11-29 07:51:42 is 34013709.633213632 s in the future tar: ./usr: time stamp 2026-11-29 07:46:28 is 34013395.633195872 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 07:50:27 is 34013634.633160017 s in the future tar: ./etc/systemd/system: time stamp 2026-11-29 07:46:29 is 34013396.633140503 s in the future tar: ./etc/alternatives: time stamp 2026-11-29 07:52:01 is 34013728.633107814 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign-t_1.0.2-15.dsc] I: copying [./dialign-t_1.0.2.orig.tar.gz] I: copying [./dialign-t_1.0.2-15.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./dialign-t_1.0.2-15.dsc: no acceptable signature found dpkg-source: info: extracting dialign-t in dialign-t-1.0.2 dpkg-source: info: unpacking dialign-t_1.0.2.orig.tar.gz dpkg-source: info: unpacking dialign-t_1.0.2-15.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying prevent_enforcing_arch.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying consistent_declarations.patch dpkg-source: info: applying clang-ftbfs.diff dpkg-source: info: applying spelling.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying fix-declarations.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/974094/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 01:36 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/974094/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/974094/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=6428a33caa374400b4f62fc0020fefc4 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=974094 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/pbuilderrc_fLAE --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b2 --logfile b2/build.log dialign-t_1.0.2-15.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/974094/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 42.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Fetched 11.3 MB in 0s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/974094/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/974094/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dialign-t_1.0.2-15_source.changes dpkg-buildpackage: info: source package dialign-t dpkg-buildpackage: info: source version 1.0.2-15 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source cd source && make -j42 clean make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' dh_autoreconf_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source debian/rules binary dh binary --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_update_autotools_config -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_autoreconf -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_configure -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_build -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source cd source && make -j42 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o museq.o museq.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o parameters.o parameters.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o io.o io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o diag.o diag.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o alig.o alig.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o assemble.o assemble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o prob.o prob.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o orf.o orf.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o translate.o translate.c io.c: In function 'read_anchors': io.c:535:23: warning: format '%li' expects argument of type 'long int *', but argument 3 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:27: warning: format '%li' expects argument of type 'long int *', but argument 4 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:31: warning: format '%li' expects argument of type 'long int *', but argument 5 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:35: warning: format '%li' expects argument of type 'long int *', but argument 6 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:39: warning: format '%li' expects argument of type 'long int *', but argument 7 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ alig.c:13:20: warning: inline function 'calc_weight' declared but never defined 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, | ^~~~~~~~~~~ assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); | ^~~~~~~~ assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, | ^~~~~~~~~~~~~~~~~ assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ io.c: In function 'read_scr_matrix': io.c:270:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 270 | fscanf( fp, "%i", &is); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:282:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | fscanf(fp, "%s\n", rline); | ^~~~~~~~~~~~~~~~~~~~~~~~~ diag.c:1456:17: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); | ^~~~~~~~~~~~~~~~ io.c: In function 'read_diag_prob_dist': io.c:371:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f ./museq gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm -Wl,-z,relro -Wl,-z,now mv museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' dh_auto_test -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_prep -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_install -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_install -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installdocs -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installchangelogs -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installman -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installsystemduser -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_perl -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_link -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_strip_nondeterminism -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_compress -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2' dh_fixperms chmod 644 /build/reproducible-path/dialign-t-1.0.2/debian/dialign-tx-data/usr/share/dialign-tx/* make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2' dh_fixperms -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source -Ndialign-tx-data dh_missing -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_dwz -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_strip -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_makeshlibs -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_shlibdeps -a -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_installdeb -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_gencontrol -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_md5sums -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_builddeb -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dpkg-deb: building package 'dialign-tx-dbgsym' in '../dialign-tx-dbgsym_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx-data' in '../dialign-tx-data_1.0.2-15_all.deb'. dpkg-genbuildinfo --build=binary -O../dialign-t_1.0.2-15_amd64.buildinfo dpkg-genchanges --build=binary -O../dialign-t_1.0.2-15_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/974094/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/974094/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/974094 and its subdirectories I: Current time: Fri Oct 31 15:37:10 +14 2025 I: pbuilder-time-stamp: 1761874630 + false + set +x Fri Oct 31 01:37:10 UTC 2025 I: Signing ./b2/dialign-t_1.0.2-15_amd64.buildinfo as dialign-t_1.0.2-15_amd64.buildinfo.asc Fri Oct 31 01:37:10 UTC 2025 I: Signed ./b2/dialign-t_1.0.2-15_amd64.buildinfo as ./b2/dialign-t_1.0.2-15_amd64.buildinfo.asc Fri Oct 31 01:37:10 UTC 2025 - build #2 for dialign-t/forky/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 01:37:10 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ai78dN7R, removing. /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF: total 44 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 01:36 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 01:37 b2 -rw-rw-r-- 1 jenkins jenkins 2201 Mar 16 2024 dialign-t_1.0.2-15.dsc -rw------- 1 jenkins jenkins 31520 Oct 31 01:36 rbuildlog.NXFjrj9 /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b1: total 1188 -rw-r--r-- 1 jenkins jenkins 27915 Oct 31 01:36 build.log -rw-r--r-- 1 jenkins jenkins 19100 Oct 31 01:36 dialign-t_1.0.2-15.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2201 Oct 31 01:36 dialign-t_1.0.2-15.dsc -rw-r--r-- 1 jenkins jenkins 5073 Oct 31 01:36 dialign-t_1.0.2-15_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5955 Oct 31 01:36 dialign-t_1.0.2-15_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1861 Oct 31 01:36 dialign-t_1.0.2-15_amd64.changes -rw-r--r-- 1 jenkins jenkins 1346 Oct 31 01:36 dialign-t_1.0.2-15_source.changes -rw-r--r-- 1 jenkins jenkins 862500 Oct 31 01:36 dialign-tx-data_1.0.2-15_all.deb -rw-r--r-- 1 jenkins jenkins 170808 Oct 31 01:36 dialign-tx-dbgsym_1.0.2-15_amd64.deb -rw-r--r-- 1 jenkins jenkins 88120 Oct 31 01:36 dialign-tx_1.0.2-15_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b2: total 1448 -rw-rw-r-- 1 jenkins jenkins 303815 Oct 31 01:37 build.log -rw-r--r-- 1 jenkins jenkins 19100 Oct 31 01:37 dialign-t_1.0.2-15.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2201 Oct 31 01:37 dialign-t_1.0.2-15.dsc -rw-rw-r-- 1 jenkins jenkins 5073 Oct 31 01:37 dialign-t_1.0.2-15_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5955 Oct 31 01:37 dialign-t_1.0.2-15_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1861 Oct 31 01:37 dialign-t_1.0.2-15_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1346 Oct 31 01:37 dialign-t_1.0.2-15_source.changes -rw-r--r-- 1 jenkins jenkins 862500 Oct 31 01:37 dialign-tx-data_1.0.2-15_all.deb -rw-r--r-- 1 jenkins jenkins 170808 Oct 31 01:37 dialign-tx-dbgsym_1.0.2-15_amd64.deb -rw-r--r-- 1 jenkins jenkins 88120 Oct 31 01:37 dialign-tx_1.0.2-15_amd64.deb Fri Oct 31 01:37:12 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri Oct 31 01:37:12 UTC 2025 I: dialign-t_1.0.2-15_amd64.changes: Format: 1.8 Date: Sat, 16 Mar 2024 16:11:18 +0100 Source: dialign-t Binary: dialign-tx dialign-tx-data dialign-tx-dbgsym Architecture: all amd64 Version: 1.0.2-15 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: dialign-tx - Segment-based multiple sequence alignment dialign-tx-data - Segment-based multiple sequence alignment (data files) Closes: 1066559 Changes: dialign-t (1.0.2-15) unstable; urgency=medium . * Team upload. * fix-declarations.patch: new: fix build failures. (Closes: #1066559) * Update standards version to 4.6.2, no changes needed. Checksums-Sha1: f8b5ddad910bb86b0fb6cb4d1a417ebb60af275c 5073 dialign-t_1.0.2-15_amd64.buildinfo aefcc634dd05e45658df6a0c1e0b35f12a899287 862500 dialign-tx-data_1.0.2-15_all.deb cfebe65d41af7a2165bf7847a1f9f738cdeb8cac 170808 dialign-tx-dbgsym_1.0.2-15_amd64.deb a3ba9775ba29ceb1dd983a13a30578403dc8326b 88120 dialign-tx_1.0.2-15_amd64.deb Checksums-Sha256: a674a4366717091ad2d1e9f199fada8de665b1621b8cca8ac58f3fb8d92990e4 5073 dialign-t_1.0.2-15_amd64.buildinfo a0d614f57a95129871d7b9304e5ce9ba0060a198a202e92e7017c3668f971002 862500 dialign-tx-data_1.0.2-15_all.deb 4d4c9603cecb0a32d50c5c07acfc4717d1875c8e9996d6f2842855067fa54c2b 170808 dialign-tx-dbgsym_1.0.2-15_amd64.deb 39c4c51376b39a32281f116da9ba75cc1a6738e91d1666b3ffdfe519d0a57264 88120 dialign-tx_1.0.2-15_amd64.deb Files: 557a7c4ea32cef5e403ff72103d13086 5073 science optional dialign-t_1.0.2-15_amd64.buildinfo 17ce791578354d403eabb28527347418 862500 science optional dialign-tx-data_1.0.2-15_all.deb dee3519ac238446295b3254c54e1de7c 170808 debug optional dialign-tx-dbgsym_1.0.2-15_amd64.deb f883d51c0cdabd9b70f74c7775978029 88120 science optional dialign-tx_1.0.2-15_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/dialign-t_1.0.2-15.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/dialign-t_1.0.2-15.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/dialign-t_1.0.2-15.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/dialign-t_1.0.2-15.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/dialign-t_1.0.2-15_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/dialign-t_1.0.2-15.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 01:36:20.146303190 +0000 +++ b2/build.log 2025-10-31 01:37:12.014368215 +0000 @@ -1,8 +1,2550 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 13:33:10 -12 2025 -I: pbuilder-time-stamp: 1761874390 +I: Current time: Fri Oct 31 15:36:25 +14 2025 +I: pbuilder-time-stamp: 1761874585 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] +tar: ./build: time stamp 2026-11-29 07:50:53 is 34013667.059952001 s in the future +tar: ./dev/ptmx: time stamp 2026-11-29 07:46:28 is 34013402.059736916 s in the future +tar: ./dev/zero: time stamp 2026-11-29 07:46:28 is 34013402.059598075 s in the future +tar: ./dev/null: time stamp 2026-11-29 07:46:28 is 34013402.059545765 s in the future +tar: ./dev/console: time stamp 2026-11-29 07:46:28 is 34013402.059470257 s in the future +tar: ./dev/random: time stamp 2026-11-29 07:46:28 is 34013402.059424699 s in the future +tar: ./dev/full: time stamp 2026-11-29 07:46:28 is 34013402.059383139 s in the future +tar: ./dev/pts: time stamp 2026-11-29 07:46:28 is 34013402.059283456 s in the future +tar: ./dev/tty: time stamp 2026-11-29 07:46:28 is 34013402.059196166 s in the future +tar: ./dev/urandom: time stamp 2026-11-29 07:46:28 is 34013402.059145061 s in the future +tar: ./etc/terminfo: time stamp 2026-11-29 07:46:38 is 34013412.058874788 s in the future +tar: ./etc/opt: time stamp 2026-11-29 07:46:28 is 34013402.05735068 s in the future +tar: ./etc/security/opasswd: time stamp 2026-11-29 07:46:40 is 34013414.056996752 s in the future +tar: ./etc/security: time stamp 2026-11-29 07:46:40 is 34013414.056512734 s in the future +tar: ./etc/shadow: time stamp 2026-11-29 07:51:36 is 34013710.05630772 s in the future +tar: ./etc/cron.daily: time stamp 2026-11-30 23:31:29 is 34156503.056084271 s in the future +tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2026-11-29 07:52:40 is 34013774.055842955 s in the future +tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2026-11-29 07:50:53 is 34013667.055763808 s in the future +tar: ./etc/apt/apt.conf.d: time stamp 2026-11-30 23:31:29 is 34156503.055659339 s in the future +tar: ./etc/apt/sources.list: time stamp 2026-11-29 07:52:40 is 34013774.055556011 s in the future +tar: ./etc/apt/trusted.gpg.d: time stamp 2026-11-29 07:50:07 is 34013621.054858043 s in the future +tar: ./etc/apt: time stamp 2026-11-29 07:52:40 is 34013774.054761791 s in the future +tar: ./etc/fstab: time stamp 2026-11-29 07:46:28 is 34013402.054699144 s in the future +tar: ./etc/update-motd.d: time stamp 2026-11-29 07:46:39 is 34013413.05414992 s in the future +tar: ./etc/ld.so.conf.d: time stamp 2026-11-29 07:52:00 is 34013734.053847729 s in the future +tar: ./etc/gshadow: time stamp 2026-11-29 07:51:36 is 34013710.053643003 s in the future +tar: ./etc/shells: time stamp 2026-11-29 07:46:39 is 34013413.05354315 s in the future +tar: ./etc/default: time stamp 2026-11-29 07:51:35 is 34013709.053221385 s in the future +tar: ./etc/group: time stamp 2026-11-29 07:51:36 is 34013710.053095341 s in the future +tar: ./etc/ld.so.cache: time stamp 2026-12-02 23:31:27 is 34329301.052899448 s in the future +tar: ./etc/.pwd.lock: time stamp 2026-11-29 07:51:36 is 34013710.052791671 s in the future +tar: ./etc/skel: time stamp 2026-11-29 07:46:39 is 34013413.052576335 s in the future +tar: ./etc/group-: time stamp 2026-11-29 07:46:28 is 34013402.052459232 s in the future +tar: ./etc/subuid: time stamp 2026-11-29 07:46:28 is 34013402.052400914 s in the future +tar: ./etc/logrotate.d: time stamp 2026-11-30 23:31:29 is 34156503.051744973 s in the future +tar: ./etc/pam.d/common-session: time stamp 2026-11-29 07:46:40 is 34013414.051606656 s in the future +tar: ./etc/pam.d/common-password: time stamp 2026-11-29 07:46:40 is 34013414.051520809 s in the future +tar: ./etc/pam.d/common-account: time stamp 2026-11-29 07:46:40 is 34013414.051394462 s in the future +tar: ./etc/pam.d/common-session-noninteractive: time stamp 2026-11-29 07:46:40 is 34013414.051274667 s in the future +tar: ./etc/pam.d/common-auth: time stamp 2026-11-29 07:46:40 is 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the future +tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 23:31:29 is 34156496.633299118 s in the future +tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 23:31:29 is 34156496.633273509 s in the future +tar: ./usr/share/man/fr: time stamp 2026-11-29 07:46:41 is 34013408.633253259 s in the future +tar: ./usr/share/man: time stamp 2026-11-29 07:51:39 is 34013706.633233827 s in the future +tar: ./usr/share: time stamp 2026-11-29 07:51:42 is 34013709.633213632 s in the future +tar: ./usr: time stamp 2026-11-29 07:46:28 is 34013395.633195872 s in the future +tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 07:50:27 is 34013634.633160017 s in the future +tar: ./etc/systemd/system: time stamp 2026-11-29 07:46:29 is 34013396.633140503 s in the future +tar: ./etc/alternatives: time stamp 2026-11-29 07:52:01 is 34013728.633107814 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -31,53 +2573,85 @@ dpkg-source: info: applying fix-declarations.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/514472/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/974094/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 01:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/974094/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/974094/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='23390d53985c4dbe954f167cf4a09bc9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='514472' - PS1='# ' - PS2='> ' + INVOCATION_ID=6428a33caa374400b4f62fc0020fefc4 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=974094 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/pbuilderrc_SuGf --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b1 --logfile b1/build.log dialign-t_1.0.2-15.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/pbuilderrc_fLAE --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b2 --logfile b2/build.log dialign-t_1.0.2-15.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/514472/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/974094/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -142,7 +2716,7 @@ Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] -Fetched 11.3 MB in 5s (2287 kB/s) +Fetched 11.3 MB in 0s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -273,7 +2847,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign-t_1.0.2-15_source.changes +I: user script /srv/workspace/pbuilder/974094/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/974094/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dialign-t_1.0.2-15_source.changes dpkg-buildpackage: info: source package dialign-t dpkg-buildpackage: info: source version 1.0.2-15 dpkg-buildpackage: info: source distribution unstable @@ -283,7 +2861,7 @@ debian/rules clean dh clean --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source - cd source && make -j40 clean + cd source && make -j42 clean make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' @@ -295,7 +2873,7 @@ dh_autoreconf -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_configure -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_build -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source - cd source && make -j40 INSTALL="install --strip-program=true" + cd source && make -j42 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o museq.o museq.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o parameters.o parameters.c @@ -337,17 +2915,6 @@ | | | | long int * int * | %i -io.c: In function 'read_scr_matrix': -io.c:270:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 270 | fscanf( fp, "%i", &is); - | ^~~~~~~~~~~~~~~~~~~~~~ -io.c:282:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 282 | fscanf(fp, "%s\n", rline); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -io.c: In function 'read_diag_prob_dist': -io.c:371:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ @@ -363,9 +2930,20 @@ assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ +io.c: In function 'read_scr_matrix': +io.c:270:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 270 | fscanf( fp, "%i", &is); + | ^~~~~~~~~~~~~~~~~~~~~~ +io.c:282:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 282 | fscanf(fp, "%s\n", rline); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ diag.c:1456:17: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); | ^~~~~~~~~~~~~~~~ +io.c: In function 'read_diag_prob_dist': +io.c:371:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f ./museq gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ @@ -411,12 +2989,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/974094/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/974094/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/514472 and its subdirectories -I: Current time: Thu Oct 30 13:36:17 -12 2025 -I: pbuilder-time-stamp: 1761874577 +I: removing directory /srv/workspace/pbuilder/974094 and its subdirectories +I: Current time: Fri Oct 31 15:37:10 +14 2025 +I: pbuilder-time-stamp: 1761874630 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/dialign-t_1.0.2-15.diff: 87.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/dialign-t_1.0.2-15.diff.gz b2/build.log: 87.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 79.0% -- replaced with stdout Fri Oct 31 01:37:13 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_dialign-t_forky_amd64_1761874633 + touch /var/log/reproducible-builds/diffoscope_stamp_dialign-t_forky_amd64_1761874633 + RESULT=0 + systemd-run '--description=diffoscope on dialign-t/1.0.2-15 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_27-75457 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF --run-session -c jenkins-reproducible-forky-diffoscope-08db6c53-1a75-4576-98e1-797550df1344 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/dbd-tmp-LlGNdSb ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/dialign-t_1.0.2-15.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/dialign-t_1.0.2-15.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/dialign-t_1.0.2-15.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b1/dialign-t_1.0.2-15_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b2/dialign-t_1.0.2-15_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_27-75457.service; invocation ID: 2804a0d9502c4af9ad4797b0597e23d4 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/dialign-t_1.0.2-15.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/dialign-t_1.0.2-15.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/dialign-t_1.0.2-15.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b1/dialign-t_1.0.2-15_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.uJuzgoMF/b2/dialign-t_1.0.2-15_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 205ms CPU time consumed: 177ms Memory peak: 17.7M (swap: 0B) _ _ _ _ _ __| (_) __ _| (_) __ _ _ __ | |_ / _` | |/ _` | | |/ _` | '_ \ _____| __| | (_| | | (_| | | | (_| | | | |_____| |_ \__,_|_|\__,_|_|_|\__, |_| |_| \__| |___/ Fri Oct 31 01:37:13 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 01:37:13 UTC 2025 I: dialign-t from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 01:37:13] INFO: Starting at 2025-10-31 01:37:13.962809 [2025-10-31 01:37:14] INFO: Generating the pages of 1 package(s) [2025-10-31 01:37:14] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/dialign-t didn't produce a buildlog, even though it has been built. [2025-10-31 01:37:14] INFO: Finished at 2025-10-31 01:37:14.259734, took: 0:00:00.296931 Fri Oct 31 01:37:14 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/dialign-t.html Fri Oct 31 01:37:14 UTC 2025 I: Removing signed dialign-t_1.0.2-15_amd64.buildinfo.asc files: removed './b1/dialign-t_1.0.2-15_amd64.buildinfo.asc' removed './b2/dialign-t_1.0.2-15_amd64.buildinfo.asc' 1761874634 amd64 forky dialign-t Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/dialign-t_1.0.2-15.rbuild.log: 74.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/dialign-t_1.0.2-15.rbuild.log.gz [2025-10-31 01:37:14] INFO: Starting at 2025-10-31 01:37:14.626472 [2025-10-31 01:37:14] INFO: Generating the pages of 1 package(s) [2025-10-31 01:37:14] INFO: Finished at 2025-10-31 01:37:14.898779, took: 0:00:00.272311 All cleanup done. Fri Oct 31 01:37:14 UTC 2025 - total duration: 0h 4m 25s. Fri Oct 31 01:37:14 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-2L84c2F8, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 4min 26.724s CPU time consumed: 3.356s Memory peak: 44.3M (swap: 0B)