Running as unit: rb-build-amd64_28-48483.service ==================================================================================== Sat Feb 22 18:30:26 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_28) on jenkins, called using "ionos15-amd64 ionos11-amd64" as arguments. Sat Feb 22 18:30:26 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-0uJJmbF4" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 18:30:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sat Feb 22 18:30:26 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-1urN97' Sat Feb 22 18:30:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sat Feb 22 18:30:26 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-9gOcPc' ok, let's check if libgenome is building anywhere yet… ok, libgenome is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libgenome in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Sat Feb 22 18:30:37 UTC 2025 I: starting to build libgenome/unstable/amd64 on jenkins on '2025-02-22 18:30' Sat Feb 22 18:30:37 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/48483/console.log 1740249037 amd64 unstable libgenome Sat Feb 22 18:30:37 UTC 2025 I: Downloading source for unstable/libgenome=1.3.11+svn20110227.4616-6 --2025-02-22 18:30:38-- http://deb.debian.org/debian/pool/main/libg/libgenome/libgenome_1.3.11%2bsvn20110227.4616-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2329 (2.3K) [text/prs.lines.tag] Saving to: ‘libgenome_1.3.11+svn20110227.4616-6.dsc’ 0K .. 100% 368M=0s 2025-02-22 18:30:38 (368 MB/s) - ‘libgenome_1.3.11+svn20110227.4616-6.dsc’ saved [2329/2329] --2025-02-22 18:30:38-- http://deb.debian.org/debian/pool/main/libg/libgenome/libgenome_1.3.11%2bsvn20110227.4616-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2329 (2.3K) [text/prs.lines.tag] Saving to: ‘libgenome_1.3.11+svn20110227.4616-6.dsc’ 0K .. 100% 368M=0s 2025-02-22 18:30:38 (368 MB/s) - ‘libgenome_1.3.11+svn20110227.4616-6.dsc’ saved [2329/2329] Sat Feb 22 18:30:38 UTC 2025 I: libgenome_1.3.11+svn20110227.4616-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgenome Binary: libgenome-dev, libgenome0 Architecture: any Version: 1.3.11+svn20110227.4616-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://sourceforge.net/projects/libgenome/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libgenome Vcs-Git: https://salsa.debian.org/med-team/libgenome.git Build-Depends: debhelper-compat (= 13), d-shlibs Package-List: libgenome-dev deb libdevel optional arch=any libgenome0 deb libs optional arch=any Checksums-Sha1: ff883500ecf525a078e542ba2eacf7918f7a02f8 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 59be97f5a108ea65aab8e094e87cf864c7aefc4b 11012 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz Checksums-Sha256: a2ca77c2a4e9c6239d9cc2fd84b84ffa75444283e3c3d34f8e724525b6a1b677 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz d9acd8439aa96fd9a03715c627aecd74c2e36e1cb06605b692d28e4987e139a7 11012 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz Files: 505900cdacc864d2a52847ff47b8ae37 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 041b4257884c07dcbb7cf981aa66c377 11012 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz Dgit: 86e25e54e7ab9b1c72b06b9d927b5be88681719e debian archive/debian/1.3.11+svn20110227.4616-6 https://git.dgit.debian.org/libgenome -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmS2joIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrYpQ/9GmfxAx9Kn/A03Txzsgh5gI0HZwWR E9IKx/Le6uGfYME9Km2/QNJuxlaRRDxyeaRf6UQP+uQrPUGNfUc2UjlhOrwS8bB1 8HZiuvFpjSMX8tJFC8m7YFMn8/60FosR2MscU44+QHxM1HVf0AJdzeYG2cmlBdxc gou51jSb7dVUwE3XpokVoz/uLYCAihgkwCr4dW29HTmesZXIlk0QlU4Iago3m9OK J8lIetzln44h/sXQZ4YgkiUsJGDE3Rg60NPqj2iE9G3zPhtRHGa6sVvN9ZRgeVf0 HCgNnffxXvNWjCNQ2lyIDAbCeb0SWHzbJ9Arl/KqueNtuHEiQ5MYd/cSa0611dUS Eei9E3hEwHjFBSlqByV3ppbKnaIP8SS85cGyhIVozSpbD17zySMbEwouf2+hNzy4 t1pasoU23xze2Tvkbe0UJpXxc06zGIsMFYg3RYffjqTk3knPdAcyHC/pd5hQ5BNM rMz1L+WSIjfc7lINFH2Ek8Iw1SB+Mqh/ze8cZW4mE7baZUiDjrcR3RYB0CbMVCrb GITtKeN98DBRw/umZoLKpMTkgVvPn0gR6ZVzIMQtYPOSSGytZWcFrcwbedLI4rf2 54RK9+qv3SuVr1UvfBaoqet8nSCnDQuZ1RNcqUPkLqMdMEuXlz/0gAfi7JGfJKPJ s/g6NRO6gkP4HWA= =ZSy4 -----END PGP SIGNATURE----- Sat Feb 22 18:30:38 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 18:30:38 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat Feb 22 18:30:38 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat Feb 22 18:30:38 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sat Feb 22 18:30:38 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-C20iyZ' ==================================================================================== Sat Mar 28 00:53:38 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 libgenome unstable /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP 1.3.11+svn20110227.4616-6" as arguments. Sat Mar 28 00:53:39 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-CPPUAyCD" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Mar 28 00:53:39 UTC 2026 I: Downloading source for unstable/libgenome=1.3.11+svn20110227.4616-6 Reading package lists... NOTICE: 'libgenome' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgenome.git Please use: git clone https://salsa.debian.org/med-team/libgenome.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 94.5 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (dsc) [2329 B] Get:2 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (tar) [81.1 kB] Get:3 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (diff) [11.0 kB] Fetched 94.5 kB in 0s (994 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libgenome' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgenome.git Please use: git clone https://salsa.debian.org/med-team/libgenome.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 94.5 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (dsc) [2329 B] Get:2 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (tar) [81.1 kB] Get:3 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (diff) [11.0 kB] Fetched 94.5 kB in 0s (994 kB/s) Download complete and in download only mode ============================================================================= Building libgenome in unstable on amd64 on ionos15-amd64 now. Date: Sat Mar 28 00:53:39 UTC 2026 Date UTC: Sat Mar 28 00:53:39 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 12:53:39 -12 2026 I: pbuilder-time-stamp: 1774659219 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgenome_1.3.11+svn20110227.4616-6.dsc] I: copying [./libgenome_1.3.11+svn20110227.4616.orig.tar.xz] I: copying [./libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libgenome_1.3.11+svn20110227.4616-6.dsc: unsupported subcommand dpkg-source: info: extracting libgenome in libgenome-1.3.11+svn20110227.4616 dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616.orig.tar.xz dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-6.1.patch dpkg-source: info: applying drop-version-number.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/259328/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2fe4fc04acf5492085b58ac919fc4fc8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='259328' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/pbuilderrc_xZ9N --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b1 --logfile b1/build.log libgenome_1.3.11+svn20110227.4616-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/259328/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 20.6 MB of archives. After unpacking 78.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Fetched 20.6 MB in 1s (18.4 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-4_amd64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... 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Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgenome_1.3.11+svn20110227.4616-6_source.changes dpkg-buildpackage: info: source package libgenome dpkg-buildpackage: info: source version 1.3.11+svn20110227.4616-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from... configure.ac:61: the top level configure.ac:70: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:70: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:70: the top level configure.ac:73: warning: The macro 'AM_PROG_LIBTOOL' is obsolete. configure.ac:73: You should run autoupdate. m4/libtool.m4:101: AM_PROG_LIBTOOL is expanded from... configure.ac:73: the top level configure.ac:77: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:77: the top level configure.ac:99: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:99: You should use the 'AC_CONFIG_HEADERS' macro instead. aclocal.m4:707: AM_CONFIG_HEADER is expanded from... configure.ac:99: the top level configure.ac:116: warning: The macro 'AC_HEADER_TIME' is obsolete. configure.ac:116: You should run autoupdate. ./lib/autoconf/headers.m4:702: AC_HEADER_TIME is expanded from... configure.ac:116: the top level configure.ac:119: warning: The macro 'AC_PROG_GCC_TRADITIONAL' is obsolete. configure.ac:119: You should run autoupdate. ./lib/autoconf/c.m4:1676: AC_PROG_GCC_TRADITIONAL is expanded from... configure.ac:119: the top level configure.ac:124: warning: AC_OUTPUT should be used without arguments. configure.ac:124: You should run autoupdate. configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:61: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:68: installing 'config/compile' configure.ac:8: installing 'config/config.guess' configure.ac:8: installing 'config/config.sub' configure.ac:61: installing 'config/install-sh' configure.ac:61: installing 'config/missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses libGenome/Makefile.am:44: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libGenome/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether ln -s works... yes checking for gcc option to enable large file support... none needed checking for egrep... (cached) /usr/bin/grep -E checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libGenome/Makefile config.status: creating libGenome.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make all-recursive make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making all in libGenome make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. 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-ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSEQSource.cpp -o gnSEQSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnTranslator.cpp -o gnTranslator.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnGBKSource.cpp -o gnGBKSource.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 1:3:1 -Wl,-z,relro -Wl,-z,now -o libGenome.la -rpath /usr/lib/x86_64-linux-gnu gnFilter.lo gnCompare.lo gnTranslator.lo gnSourceFactory.lo gnFeature.lo gnSourceQualifier.lo gnFileContig.lo gnSourceSpec.lo gnFileSource.lo gnFASSource.lo gnFragmentSpec.lo gnStringSpec.lo gnGBKSource.lo gnStringTools.lo gnGenomeSpec.lo gnLocation.lo gnRAWSource.lo gnBaseFeature.lo gnSEQSource.lo gnSequence.lo gnContigSpec.lo gnSourceHeader.lo gnException.lo gnFastTranslator.lo gnPosSpecificTranslator.lo gnDefs.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/gnFilter.o .libs/gnCompare.o .libs/gnTranslator.o .libs/gnSourceFactory.o .libs/gnFeature.o .libs/gnSourceQualifier.o .libs/gnFileContig.o .libs/gnSourceSpec.o .libs/gnFileSource.o .libs/gnFASSource.o .libs/gnFragmentSpec.o .libs/gnStringSpec.o .libs/gnGBKSource.o .libs/gnStringTools.o .libs/gnGenomeSpec.o .libs/gnLocation.o .libs/gnRAWSource.o .libs/gnBaseFeature.o .libs/gnSEQSource.o .libs/gnSequence.o .libs/gnContigSpec.o .libs/gnSourceHeader.o .libs/gnException.o .libs/gnFastTranslator.o .libs/gnPosSpecificTranslator.o .libs/gnDefs.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGenome.so.0 -o .libs/libGenome.so.0.1.3 libtool: link: (cd ".libs" && rm -f "libGenome.so.0" && ln -s "libGenome.so.0.1.3" "libGenome.so.0") libtool: link: (cd ".libs" && rm -f "libGenome.so" && ln -s "libGenome.so.0.1.3" "libGenome.so") libtool: link: ar cr .libs/libGenome.a gnFilter.o gnCompare.o gnTranslator.o gnSourceFactory.o gnFeature.o gnSourceQualifier.o gnFileContig.o gnSourceSpec.o gnFileSource.o gnFASSource.o gnFragmentSpec.o gnStringSpec.o gnGBKSource.o gnStringTools.o gnGenomeSpec.o gnLocation.o gnRAWSource.o gnBaseFeature.o gnSEQSource.o gnSequence.o gnContigSpec.o gnSourceHeader.o gnException.o gnFastTranslator.o gnPosSpecificTranslator.o gnDefs.o libtool: link: ranlib .libs/libGenome.a libtool: link: ( cd ".libs" && rm -f "libGenome.la" && ln -s "../libGenome.la" "libGenome.la" ) make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' echo 'Disable test since some header (gnDNXSource.h) seems to be missing.' Disable test since some header (gnDNXSource.h) seems to be missing. make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libgenome-1.3.11\+svn20110227.4616/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making install in libGenome make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libGenome.la '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libGenome.so.0.1.3 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so.0 || { rm -f libGenome.so.0 && ln -s libGenome.so.0.1.3 libGenome.so.0; }; }) libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so || { rm -f libGenome.so && ln -s libGenome.so.0.1.3 libGenome.so; }; }) libtool: install: /usr/bin/install -c .libs/libGenome.lai /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.la libtool: install: /usr/bin/install -c .libs/libGenome.a /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: chmod 644 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: ranlib /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnABISource.h gnDataBaseSource.h gnLocation.h gnSetup.h gnBaseFeature.h gnDebug.h gnMultiSpec.h gnSourceFactory.h gnBaseFilter.h gnDefs.h gnSourceHeader.h gnPosSpecificTranslator.h gnBaseHeader.h gnFASSource.h gnSourceQualifier.h gnBaseQualifier.h gnSourceSpec.h gnStringQualifier.h gnBaseSource.h gnFeature.h gnProteinSequence.h gnStringHeader.h gnBaseSpec.h gnFileContig.h gnRAWSource.h gnClone.h gnFileSource.h gnRNASequence.h gnStringSpec.h gnCompare.h gnFilter.h gnSEQSource.h gnStringTools.h gnContigSpec.h gnFragmentSpec.h gnTranslator.h gnDNASequence.h gnGBKSource.h gnVersion.h gnFastTranslator.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnGenomeSpec.h gnSequence.h gnException.h gnExceptionCode.h IntervalSequenceTree.h OmpGuard.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGenome.pc '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_install # Call d-shlibmove to comply with library packaging guide # mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgenome0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0 debian/libgenome0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 debian/libgenome0/usr/lib/x86_64-linux-gnu PKGDEV=libgenome-dev PKGSHL=libgenome0 install -d -m 755 debian/libgenome-dev/usr/include mv debian/tmp/usr/include/libGenome debian/libgenome-dev/usr/include install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libGenome.la -delete make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgenome0/DEBIAN/symbols doesn't match completely debian/libgenome0.symbols.amd64 --- debian/libgenome0.symbols.amd64 (libgenome0_1.3.11+svn20110227.4616-6_amd64) +++ dpkg-gensymbolsktn3sv 2026-03-28 00:54:35.722331938 +0000 @@ -626,56 +626,68 @@ (optional)_ZNSt12_Vector_baseIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_appendIJRKS1_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRKS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIjSaIjEE17_M_realloc_appendIJRKjEEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1110_List_baseIPKN6genome12gnBaseFilterESaIS4_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueISB_EES6_ISt17_Rb_tree_iteratorISB_EbEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 1.3.11+svn20110227.4616 (optional)_ZSt16__do_uninit_copyIPKN6genome10gnLocationEPS1_ET0_T_S6_S5_@Base 1.3.11+svn20110227.4616 - (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnBaseSpecE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnLocationE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnSequenceE@Base 1.3.11+svn20110227.4616 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgenome-dev' in '../libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-deb: building package 'libgenome0-dbgsym' in '../libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-deb: building package 'libgenome0' in '../libgenome0_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/259328 and its subdirectories I: Current time: Fri Mar 27 12:54:42 -12 2026 I: pbuilder-time-stamp: 1774659282 Sat Mar 28 00:54:42 UTC 2026 I: Signing ./b1/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo as libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc Sat Mar 28 00:54:42 UTC 2026 I: Signed ./b1/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo as ./b1/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc Sat Mar 28 00:54:42 UTC 2026 - build #1 for libgenome/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Sat Mar 28 00:54:42 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-CPPUAyCD, removing. /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 18:31 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 18:30 b2 -rw-r--r-- 1 jenkins jenkins 2329 Jul 18 2023 libgenome_1.3.11+svn20110227.4616-6.dsc -rw------- 1 jenkins jenkins 3540 Feb 22 18:30 rbuildlog.BcYF2N9 /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b1: total 2172 -rw-r--r-- 1 jenkins jenkins 77530 Feb 22 18:31 build.log -rw-r--r-- 1 jenkins jenkins 187752 Feb 22 18:31 libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1789604 Feb 22 18:31 libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 123756 Feb 22 18:31 libgenome0_1.3.11+svn20110227.4616-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 11012 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2329 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6.dsc -rw-r--r-- 1 jenkins jenkins 5772 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6654 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2249 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 1668 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b2: total 0 Sat Feb 22 18:31:43 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 12:53:39 -12 2026 I: pbuilder-time-stamp: 1774659219 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgenome_1.3.11+svn20110227.4616-6.dsc] I: copying [./libgenome_1.3.11+svn20110227.4616.orig.tar.xz] I: copying [./libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libgenome_1.3.11+svn20110227.4616-6.dsc: unsupported subcommand dpkg-source: info: extracting libgenome in libgenome-1.3.11+svn20110227.4616 dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616.orig.tar.xz dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-6.1.patch dpkg-source: info: applying drop-version-number.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/259328/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2fe4fc04acf5492085b58ac919fc4fc8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='259328' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/pbuilderrc_xZ9N --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b1 --logfile b1/build.log libgenome_1.3.11+svn20110227.4616-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/259328/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 20.6 MB of archives. After unpacking 78.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Fetched 20.6 MB in 1s (18.4 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-4_amd64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:amd64. 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Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgenome_1.3.11+svn20110227.4616-6_source.changes dpkg-buildpackage: info: source package libgenome dpkg-buildpackage: info: source version 1.3.11+svn20110227.4616-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from... configure.ac:61: the top level configure.ac:70: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:70: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:70: the top level configure.ac:73: warning: The macro 'AM_PROG_LIBTOOL' is obsolete. configure.ac:73: You should run autoupdate. m4/libtool.m4:101: AM_PROG_LIBTOOL is expanded from... configure.ac:73: the top level configure.ac:77: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:77: the top level configure.ac:99: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:99: You should use the 'AC_CONFIG_HEADERS' macro instead. aclocal.m4:707: AM_CONFIG_HEADER is expanded from... configure.ac:99: the top level configure.ac:116: warning: The macro 'AC_HEADER_TIME' is obsolete. configure.ac:116: You should run autoupdate. ./lib/autoconf/headers.m4:702: AC_HEADER_TIME is expanded from... configure.ac:116: the top level configure.ac:119: warning: The macro 'AC_PROG_GCC_TRADITIONAL' is obsolete. configure.ac:119: You should run autoupdate. ./lib/autoconf/c.m4:1676: AC_PROG_GCC_TRADITIONAL is expanded from... configure.ac:119: the top level configure.ac:124: warning: AC_OUTPUT should be used without arguments. configure.ac:124: You should run autoupdate. configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:61: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:68: installing 'config/compile' configure.ac:8: installing 'config/config.guess' configure.ac:8: installing 'config/config.sub' configure.ac:61: installing 'config/install-sh' configure.ac:61: installing 'config/missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses libGenome/Makefile.am:44: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libGenome/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether ln -s works... yes checking for gcc option to enable large file support... none needed checking for egrep... (cached) /usr/bin/grep -E checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libGenome/Makefile config.status: creating libGenome.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make all-recursive make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making all in libGenome make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnFilter.lo gnFilter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnCompare.lo gnCompare.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnTranslator.lo gnTranslator.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. 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-ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFeature.cpp -o gnFeature.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFilter.cpp -o gnFilter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnStringTools.cpp -o gnStringTools.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFastTranslator.cpp -o gnFastTranslator.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnCompare.cpp -o gnCompare.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnRAWSource.cpp -o gnRAWSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnBaseFeature.cpp -o gnBaseFeature.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFragmentSpec.cpp -o gnFragmentSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSequence.cpp -o gnSequence.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSourceFactory.cpp -o gnSourceFactory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFASSource.cpp -o gnFASSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnGenomeSpec.cpp -o gnGenomeSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSEQSource.cpp -o gnSEQSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnTranslator.cpp -o gnTranslator.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnGBKSource.cpp -o gnGBKSource.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 1:3:1 -Wl,-z,relro -Wl,-z,now -o libGenome.la -rpath /usr/lib/x86_64-linux-gnu gnFilter.lo gnCompare.lo gnTranslator.lo gnSourceFactory.lo gnFeature.lo gnSourceQualifier.lo gnFileContig.lo gnSourceSpec.lo gnFileSource.lo gnFASSource.lo gnFragmentSpec.lo gnStringSpec.lo gnGBKSource.lo gnStringTools.lo gnGenomeSpec.lo gnLocation.lo gnRAWSource.lo gnBaseFeature.lo gnSEQSource.lo gnSequence.lo gnContigSpec.lo gnSourceHeader.lo gnException.lo gnFastTranslator.lo gnPosSpecificTranslator.lo gnDefs.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/gnFilter.o .libs/gnCompare.o .libs/gnTranslator.o .libs/gnSourceFactory.o .libs/gnFeature.o .libs/gnSourceQualifier.o .libs/gnFileContig.o .libs/gnSourceSpec.o .libs/gnFileSource.o .libs/gnFASSource.o .libs/gnFragmentSpec.o .libs/gnStringSpec.o .libs/gnGBKSource.o .libs/gnStringTools.o .libs/gnGenomeSpec.o .libs/gnLocation.o .libs/gnRAWSource.o .libs/gnBaseFeature.o .libs/gnSEQSource.o .libs/gnSequence.o .libs/gnContigSpec.o .libs/gnSourceHeader.o .libs/gnException.o .libs/gnFastTranslator.o .libs/gnPosSpecificTranslator.o .libs/gnDefs.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGenome.so.0 -o .libs/libGenome.so.0.1.3 libtool: link: (cd ".libs" && rm -f "libGenome.so.0" && ln -s "libGenome.so.0.1.3" "libGenome.so.0") libtool: link: (cd ".libs" && rm -f "libGenome.so" && ln -s "libGenome.so.0.1.3" "libGenome.so") libtool: link: ar cr .libs/libGenome.a gnFilter.o gnCompare.o gnTranslator.o gnSourceFactory.o gnFeature.o gnSourceQualifier.o gnFileContig.o gnSourceSpec.o gnFileSource.o gnFASSource.o gnFragmentSpec.o gnStringSpec.o gnGBKSource.o gnStringTools.o gnGenomeSpec.o gnLocation.o gnRAWSource.o gnBaseFeature.o gnSEQSource.o gnSequence.o gnContigSpec.o gnSourceHeader.o gnException.o gnFastTranslator.o gnPosSpecificTranslator.o gnDefs.o libtool: link: ranlib .libs/libGenome.a libtool: link: ( cd ".libs" && rm -f "libGenome.la" && ln -s "../libGenome.la" "libGenome.la" ) make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' echo 'Disable test since some header (gnDNXSource.h) seems to be missing.' Disable test since some header (gnDNXSource.h) seems to be missing. make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libgenome-1.3.11\+svn20110227.4616/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making install in libGenome make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libGenome.la '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libGenome.so.0.1.3 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so.0 || { rm -f libGenome.so.0 && ln -s libGenome.so.0.1.3 libGenome.so.0; }; }) libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so || { rm -f libGenome.so && ln -s libGenome.so.0.1.3 libGenome.so; }; }) libtool: install: /usr/bin/install -c .libs/libGenome.lai /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.la libtool: install: /usr/bin/install -c .libs/libGenome.a /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: chmod 644 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: ranlib /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnABISource.h gnDataBaseSource.h gnLocation.h gnSetup.h gnBaseFeature.h gnDebug.h gnMultiSpec.h gnSourceFactory.h gnBaseFilter.h gnDefs.h gnSourceHeader.h gnPosSpecificTranslator.h gnBaseHeader.h gnFASSource.h gnSourceQualifier.h gnBaseQualifier.h gnSourceSpec.h gnStringQualifier.h gnBaseSource.h gnFeature.h gnProteinSequence.h gnStringHeader.h gnBaseSpec.h gnFileContig.h gnRAWSource.h gnClone.h gnFileSource.h gnRNASequence.h gnStringSpec.h gnCompare.h gnFilter.h gnSEQSource.h gnStringTools.h gnContigSpec.h gnFragmentSpec.h gnTranslator.h gnDNASequence.h gnGBKSource.h gnVersion.h gnFastTranslator.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnGenomeSpec.h gnSequence.h gnException.h gnExceptionCode.h IntervalSequenceTree.h OmpGuard.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGenome.pc '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_install # Call d-shlibmove to comply with library packaging guide # mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgenome0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0 debian/libgenome0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 debian/libgenome0/usr/lib/x86_64-linux-gnu PKGDEV=libgenome-dev PKGSHL=libgenome0 install -d -m 755 debian/libgenome-dev/usr/include mv debian/tmp/usr/include/libGenome debian/libgenome-dev/usr/include install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libGenome.la -delete make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgenome0/DEBIAN/symbols doesn't match completely debian/libgenome0.symbols.amd64 --- debian/libgenome0.symbols.amd64 (libgenome0_1.3.11+svn20110227.4616-6_amd64) +++ dpkg-gensymbolsktn3sv 2026-03-28 00:54:35.722331938 +0000 @@ -626,56 +626,68 @@ (optional)_ZNSt12_Vector_baseIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_appendIJRKS1_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRKS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIjSaIjEE17_M_realloc_appendIJRKjEEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1110_List_baseIPKN6genome12gnBaseFilterESaIS4_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueISB_EES6_ISt17_Rb_tree_iteratorISB_EbEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 1.3.11+svn20110227.4616 (optional)_ZSt16__do_uninit_copyIPKN6genome10gnLocationEPS1_ET0_T_S6_S5_@Base 1.3.11+svn20110227.4616 - (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnBaseSpecE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnLocationE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnSequenceE@Base 1.3.11+svn20110227.4616 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgenome-dev' in '../libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-deb: building package 'libgenome0-dbgsym' in '../libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-deb: building package 'libgenome0' in '../libgenome0_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/259328 and its subdirectories I: Current time: Fri Mar 27 12:54:42 -12 2026 I: pbuilder-time-stamp: 1774659282 Sat Feb 22 18:31:43 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat Feb 22 18:31:43 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat Feb 22 18:31:43 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sat Feb 22 18:31:43 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-tMbwaD' ==================================================================================== Sat Feb 22 18:31:44 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 libgenome unstable /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP 1.3.11+svn20110227.4616-6" as arguments. Sat Feb 22 18:31:44 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-uZbjc0sf" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 18:31:44 UTC 2025 I: Downloading source for unstable/libgenome=1.3.11+svn20110227.4616-6 Reading package lists... NOTICE: 'libgenome' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgenome.git Please use: git clone https://salsa.debian.org/med-team/libgenome.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 94.5 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (dsc) [2329 B] Get:2 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (tar) [81.1 kB] Get:3 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (diff) [11.0 kB] Fetched 94.5 kB in 0s (1766 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libgenome' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgenome.git Please use: git clone https://salsa.debian.org/med-team/libgenome.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 94.5 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (dsc) [2329 B] Get:2 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (tar) [81.1 kB] Get:3 http://deb.debian.org/debian unstable/main libgenome 1.3.11+svn20110227.4616-6 (diff) [11.0 kB] Fetched 94.5 kB in 0s (1766 kB/s) Download complete and in download only mode ============================================================================= Re-Building libgenome in unstable on amd64 on ionos11-amd64 now. Date: Sat Feb 22 18:31:45 UTC 2025 Date UTC: Sat Feb 22 18:31:45 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/pbuilderrc_uF6V + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libgenome = debian-installer -o libgenome = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libgenome = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/pbuilderrc_uF6V --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b2 --logfile b2/build.log libgenome_1.3.11+svn20110227.4616-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 23 08:31:45 +14 2025 I: pbuilder-time-stamp: 1740249105 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgenome_1.3.11+svn20110227.4616-6.dsc] I: copying [./libgenome_1.3.11+svn20110227.4616.orig.tar.xz] I: copying [./libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libgenome_1.3.11+svn20110227.4616-6.dsc: unsupported subcommand dpkg-source: info: extracting libgenome in libgenome-1.3.11+svn20110227.4616 dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616.orig.tar.xz dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-6.1.patch dpkg-source: info: applying drop-version-number.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 22 18:32 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=9aef92bbdb384b0795c91af95e8c3ea5 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3164576 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/pbuilderrc_uF6V --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b2 --logfile b2/build.log libgenome_1.3.11+svn20110227.4616-6.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 20.6 MB of archives. After unpacking 78.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Fetched 20.6 MB in 1s (24.1 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-4_amd64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libgenome_1.3.11+svn20110227.4616-6_source.changes dpkg-buildpackage: info: source package libgenome dpkg-buildpackage: info: source version 1.3.11+svn20110227.4616-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from... configure.ac:61: the top level configure.ac:70: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:70: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:70: the top level configure.ac:73: warning: The macro 'AM_PROG_LIBTOOL' is obsolete. configure.ac:73: You should run autoupdate. m4/libtool.m4:101: AM_PROG_LIBTOOL is expanded from... configure.ac:73: the top level configure.ac:77: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:77: the top level configure.ac:99: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:99: You should use the 'AC_CONFIG_HEADERS' macro instead. aclocal.m4:707: AM_CONFIG_HEADER is expanded from... configure.ac:99: the top level configure.ac:116: warning: The macro 'AC_HEADER_TIME' is obsolete. configure.ac:116: You should run autoupdate. ./lib/autoconf/headers.m4:702: AC_HEADER_TIME is expanded from... configure.ac:116: the top level configure.ac:119: warning: The macro 'AC_PROG_GCC_TRADITIONAL' is obsolete. configure.ac:119: You should run autoupdate. ./lib/autoconf/c.m4:1676: AC_PROG_GCC_TRADITIONAL is expanded from... configure.ac:119: the top level configure.ac:124: warning: AC_OUTPUT should be used without arguments. configure.ac:124: You should run autoupdate. configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:61: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:68: installing 'config/compile' configure.ac:8: installing 'config/config.guess' configure.ac:8: installing 'config/config.sub' configure.ac:61: installing 'config/install-sh' configure.ac:61: installing 'config/missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses libGenome/Makefile.am:44: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libGenome/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether ln -s works... yes checking for gcc option to enable large file support... none needed checking for egrep... (cached) /usr/bin/grep -E checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libGenome/Makefile config.status: creating libGenome.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j20 make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make all-recursive make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making all in libGenome make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. 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-I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnSEQSource.lo gnSEQSource.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnSequence.lo gnSequence.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFeature.cpp -fPIC -DPIC -o .libs/gnFeature.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnCompare.cpp -fPIC -DPIC -o .libs/gnCompare.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSourceFactory.cpp -fPIC -DPIC -o .libs/gnSourceFactory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFilter.cpp -fPIC -DPIC -o .libs/gnFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFileContig.cpp -fPIC -DPIC -o .libs/gnFileContig.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnStringTools.cpp -fPIC -DPIC -o .libs/gnStringTools.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnGBKSource.cpp -fPIC -DPIC -o .libs/gnGBKSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFASSource.cpp -fPIC -DPIC -o .libs/gnFASSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFileSource.cpp -fPIC -DPIC -o .libs/gnFileSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnTranslator.cpp -fPIC -DPIC -o .libs/gnTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' echo 'Disable test since some header (gnDNXSource.h) seems to be missing.' Disable test since some header (gnDNXSource.h) seems to be missing. make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libgenome-1.3.11\+svn20110227.4616/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making install in libGenome make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libGenome.la '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libGenome.so.0.1.3 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so.0 || { rm -f libGenome.so.0 && ln -s libGenome.so.0.1.3 libGenome.so.0; }; }) libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so || { rm -f libGenome.so && ln -s libGenome.so.0.1.3 libGenome.so; }; }) libtool: install: /usr/bin/install -c .libs/libGenome.lai /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.la libtool: install: /usr/bin/install -c .libs/libGenome.a /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: chmod 644 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: ranlib /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnABISource.h gnDataBaseSource.h gnLocation.h gnSetup.h gnBaseFeature.h gnDebug.h gnMultiSpec.h gnSourceFactory.h gnBaseFilter.h gnDefs.h gnSourceHeader.h gnPosSpecificTranslator.h gnBaseHeader.h gnFASSource.h gnSourceQualifier.h gnBaseQualifier.h gnSourceSpec.h gnStringQualifier.h gnBaseSource.h gnFeature.h gnProteinSequence.h gnStringHeader.h gnBaseSpec.h gnFileContig.h gnRAWSource.h gnClone.h gnFileSource.h gnRNASequence.h gnStringSpec.h gnCompare.h gnFilter.h gnSEQSource.h gnStringTools.h gnContigSpec.h gnFragmentSpec.h gnTranslator.h gnDNASequence.h gnGBKSource.h gnVersion.h gnFastTranslator.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnGenomeSpec.h gnSequence.h gnException.h gnExceptionCode.h IntervalSequenceTree.h OmpGuard.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGenome.pc '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_install # Call d-shlibmove to comply with library packaging guide # mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgenome0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0 debian/libgenome0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 debian/libgenome0/usr/lib/x86_64-linux-gnu PKGDEV=libgenome-dev PKGSHL=libgenome0 install -d -m 755 debian/libgenome-dev/usr/include mv debian/tmp/usr/include/libGenome debian/libgenome-dev/usr/include install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libGenome.la -delete make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgenome0/DEBIAN/symbols doesn't match completely debian/libgenome0.symbols.amd64 --- debian/libgenome0.symbols.amd64 (libgenome0_1.3.11+svn20110227.4616-6_amd64) +++ dpkg-gensymbolsqxVoIf 2025-02-22 18:33:20.911403077 +0000 @@ -626,56 +626,68 @@ (optional)_ZNSt12_Vector_baseIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_appendIJRKS1_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRKS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIjSaIjEE17_M_realloc_appendIJRKjEEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1110_List_baseIPKN6genome12gnBaseFilterESaIS4_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueISB_EES6_ISt17_Rb_tree_iteratorISB_EbEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 1.3.11+svn20110227.4616 (optional)_ZSt16__do_uninit_copyIPKN6genome10gnLocationEPS1_ET0_T_S6_S5_@Base 1.3.11+svn20110227.4616 - (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnBaseSpecE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnLocationE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnSequenceE@Base 1.3.11+svn20110227.4616 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgenome-dev' in '../libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-deb: building package 'libgenome0' in '../libgenome0_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-deb: building package 'libgenome0-dbgsym' in '../libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3164576 and its subdirectories I: Current time: Sun Feb 23 08:33:27 +14 2025 I: pbuilder-time-stamp: 1740249207 + false + set +x Sat Feb 22 18:33:27 UTC 2025 I: Signing ./b2/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo as libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc Sat Feb 22 18:33:27 UTC 2025 I: Signed ./b2/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo as ./b2/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc Sat Feb 22 18:33:27 UTC 2025 - build #2 for libgenome/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Sat Feb 22 18:33:27 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-uZbjc0sf, removing. /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP: total 96 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 18:31 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 18:33 b2 -rw-r--r-- 1 jenkins jenkins 2329 Jul 18 2023 libgenome_1.3.11+svn20110227.4616-6.dsc -rw------- 1 jenkins jenkins 81359 Feb 22 18:31 rbuildlog.BcYF2N9 /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b1: total 2188 -rw-r--r-- 1 jenkins jenkins 77530 Feb 22 18:31 build.log -rw-r--r-- 1 jenkins jenkins 187752 Feb 22 18:31 libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1789604 Feb 22 18:31 libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 123756 Feb 22 18:31 libgenome0_1.3.11+svn20110227.4616-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 11012 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2329 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6.dsc -rw-r--r-- 1 jenkins jenkins 5772 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6654 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2249 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 1668 Feb 22 18:31 libgenome_1.3.11+svn20110227.4616-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b2: total 2176 -rw-r--r-- 1 jenkins jenkins 79399 Feb 22 18:33 build.log -rw-r--r-- 1 jenkins jenkins 187752 Feb 22 18:33 libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1789604 Feb 22 18:33 libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 123756 Feb 22 18:33 libgenome0_1.3.11+svn20110227.4616-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 11012 Feb 22 18:33 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2329 Feb 22 18:33 libgenome_1.3.11+svn20110227.4616-6.dsc -rw-r--r-- 1 jenkins jenkins 5763 Feb 22 18:33 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6645 Feb 22 18:33 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2249 Feb 22 18:33 libgenome_1.3.11+svn20110227.4616-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 1668 Feb 22 18:33 libgenome_1.3.11+svn20110227.4616-6_source.changes Sat Feb 22 18:33:28 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat Feb 22 18:33:28 UTC 2025 I: libgenome_1.3.11+svn20110227.4616-6_amd64.changes: Format: 1.8 Date: Tue, 18 Jul 2023 14:57:43 +0200 Source: libgenome Binary: libgenome-dev libgenome0 libgenome0-dbgsym Architecture: amd64 Version: 1.3.11+svn20110227.4616-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libgenome-dev - toolkit for developing bioinformatic related software (devel) libgenome0 - toolkit for developing bioinformatic related software Closes: 1015488 1037728 Changes: libgenome (1.3.11+svn20110227.4616-6) unstable; urgency=medium . * d/libgenome0.symbols.amd64: update. Mark symbols optimized out by LTO as optional. This has also the side effect of resolving build issues encountered with Gcc 13. (Closes: #1015488, #1037728) * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: c2fe9d62c1da92110345c139ffaf700567c95a97 187752 libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb b379ba77c39a7bc1495c3ec56b6a7212683fbe82 1789604 libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb 423520349d132c83edd6bf006faa5e79c0bf2805 123756 libgenome0_1.3.11+svn20110227.4616-6_amd64.deb a2771313f36cde80210de558a3039f3436e465aa 5772 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo Checksums-Sha256: 776bf67617e822a1e91b35ce939297efb5ae31229d8b58ab1f74039e2d40b916 187752 libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb b98bcf89102791231ceb44ac42f70193c61462ab3444180210c69be927e9b0ce 1789604 libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb a62c61eb1dc36bd9cadb0bf88c7810332ffe1489ee8c7d9dec42dda041b167cf 123756 libgenome0_1.3.11+svn20110227.4616-6_amd64.deb 19de151afc5b405a4f68f54d802c93ca5819a27d8517a2beb81c77bfb89b4e4a 5772 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo Files: 0450afc459094dcefd8e10f030bdd487 187752 libdevel optional libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb d1bd00825337c7068fc5890beaa26127 1789604 debug optional libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb 489a05389f4ae01093abf02fb94f28e1 123756 libs optional libgenome0_1.3.11+svn20110227.4616-6_amd64.deb fb8b2ecea68775d1a94d619ed24ee61d 5772 science optional libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 18:31:43.132239166 +0000 +++ b2/build.log 2025-02-22 18:33:28.291478861 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Mar 27 12:53:39 -12 2026 -I: pbuilder-time-stamp: 1774659219 +I: Current time: Sun Feb 23 08:31:45 +14 2025 +I: pbuilder-time-stamp: 1740249105 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying drop-version-number.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/259328/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 22 18:32 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2fe4fc04acf5492085b58ac919fc4fc8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='259328' - PS1='# ' - PS2='> ' + INVOCATION_ID=9aef92bbdb384b0795c91af95e8c3ea5 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3164576 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/pbuilderrc_xZ9N --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b1 --logfile b1/build.log libgenome_1.3.11+svn20110227.4616-6.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/pbuilderrc_uF6V --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b2 --logfile b2/build.log libgenome_1.3.11+svn20110227.4616-6.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/259328/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -139,7 +171,7 @@ Get: 29 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] -Fetched 20.6 MB in 1s (18.4 MB/s) +Fetched 20.6 MB in 1s (24.1 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) @@ -278,7 +310,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgenome_1.3.11+svn20110227.4616-6_source.changes +I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libgenome_1.3.11+svn20110227.4616-6_source.changes dpkg-buildpackage: info: source package libgenome dpkg-buildpackage: info: source version 1.3.11+svn20110227.4616-6 dpkg-buildpackage: info: source distribution unstable @@ -459,91 +495,91 @@ config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build - make -j42 + make -j20 make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make all-recursive make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making all in libGenome make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnFilter.lo gnFilter.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnCompare.lo gnCompare.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnTranslator.lo gnTranslator.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnSourceFactory.lo gnSourceFactory.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnFeature.lo gnFeature.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnSourceQualifier.lo gnSourceQualifier.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o gnFileContig.lo gnFileContig.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c 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.libs/gnSourceQualifier.o .libs/gnFileContig.o .libs/gnSourceSpec.o .libs/gnFileSource.o .libs/gnFASSource.o .libs/gnFragmentSpec.o .libs/gnStringSpec.o .libs/gnGBKSource.o .libs/gnStringTools.o .libs/gnGenomeSpec.o .libs/gnLocation.o .libs/gnRAWSource.o .libs/gnBaseFeature.o .libs/gnSEQSource.o .libs/gnSequence.o .libs/gnContigSpec.o .libs/gnSourceHeader.o .libs/gnException.o .libs/gnFastTranslator.o .libs/gnPosSpecificTranslator.o .libs/gnDefs.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGenome.so.0 -o .libs/libGenome.so.0.1.3 libtool: link: (cd ".libs" && rm -f "libGenome.so.0" && ln -s "libGenome.so.0.1.3" "libGenome.so.0") libtool: link: (cd ".libs" && rm -f "libGenome.so" && ln -s "libGenome.so.0.1.3" "libGenome.so") @@ -569,7 +605,7 @@ make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libGenome.la '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libGenome.la '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libGenome.so.0.1.3 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so.0 || { rm -f libGenome.so.0 && ln -s libGenome.so.0.1.3 libGenome.so.0; }; }) libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so || { rm -f libGenome.so && ln -s libGenome.so.0.1.3 libGenome.so; }; }) @@ -633,7 +669,7 @@ dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgenome0/DEBIAN/symbols doesn't match completely debian/libgenome0.symbols.amd64 --- debian/libgenome0.symbols.amd64 (libgenome0_1.3.11+svn20110227.4616-6_amd64) -+++ dpkg-gensymbolsktn3sv 2026-03-28 00:54:35.722331938 +0000 ++++ dpkg-gensymbolsqxVoIf 2025-02-22 18:33:20.911403077 +0000 @@ -626,56 +626,68 @@ (optional)_ZNSt12_Vector_baseIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 @@ -740,8 +776,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'libgenome-dev' in '../libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb'. -dpkg-deb: building package 'libgenome0-dbgsym' in '../libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-deb: building package 'libgenome0' in '../libgenome0_1.3.11+svn20110227.4616-6_amd64.deb'. +dpkg-deb: building package 'libgenome0-dbgsym' in '../libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -749,12 +785,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3164576/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/259328 and its subdirectories -I: Current time: Fri Mar 27 12:54:42 -12 2026 -I: pbuilder-time-stamp: 1774659282 +I: removing directory /srv/workspace/pbuilder/3164576 and its subdirectories +I: Current time: Sun Feb 23 08:33:27 +14 2025 +I: pbuilder-time-stamp: 1740249207 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6.diff: 90.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6.diff.gz b2/build.log: 85.4% -- replaced with stdout Compressing the 1st log... b1/build.log: 85.9% -- replaced with stdout Sat Feb 22 18:33:29 UTC 2025 I: diffoscope 288 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libgenome_unstable_amd64_1740249209 + touch /var/log/reproducible-builds/diffoscope_stamp_libgenome_unstable_amd64_1740249209 + RESULT=0 + systemd-run '--description=diffoscope on libgenome/1.3.11+svn20110227.4616-6 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_28-48483 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP --run-session -c jenkins-reproducible-unstable-diffoscope-5b6fb047-8f31-4fa1-bf44-08ff6a1cd3ad -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/dbd-tmp-qn8jV1G ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/libgenome_1.3.11+svn20110227.4616-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/libgenome_1.3.11+svn20110227.4616-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/libgenome_1.3.11+svn20110227.4616-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b1/libgenome_1.3.11+svn20110227.4616-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b2/libgenome_1.3.11+svn20110227.4616-6_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_28-48483.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/libgenome_1.3.11+svn20110227.4616-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/libgenome_1.3.11+svn20110227.4616-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/libgenome_1.3.11+svn20110227.4616-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b1/libgenome_1.3.11+svn20110227.4616-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eBAhDKeP/b2/libgenome_1.3.11+svn20110227.4616-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 220ms CPU time consumed: 219ms _ _ _ | (_) |__ __ _ ___ _ __ ___ _ __ ___ ___ | | | '_ \ / _` |/ _ \ '_ \ / _ \| '_ ` _ \ / _ \ | | | |_) | (_| | __/ | | | (_) | | | | | | __/ |_|_|_.__/ \__, |\___|_| |_|\___/|_| |_| |_|\___| |___/ Sat Feb 22 18:33:30 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 18:33:30 UTC 2025 I: libgenome from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 18:33:30] INFO: Starting at 2025-02-22 18:33:30.902525 [2025-02-22 18:33:30] INFO: Generating the pages of 1 package(s) [2025-02-22 18:33:31] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/libgenome didn't produce a buildlog, even though it has been built. [2025-02-22 18:33:31] INFO: Finished at 2025-02-22 18:33:31.358224, took: 0:00:00.455707 Sat Feb 22 18:33:31 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libgenome.html Sat Feb 22 18:33:31 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 18:33:31 UTC 2025 I: Submitting 8.0K b1/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc https://buildinfo.debian.net/a2771313f36cde80210de558a3039f3436e465aa/libgenome_1.3.11+svn20110227.4616-6_amd64 Sat Feb 22 18:33:38 UTC 2025 I: Submitting 8.0K b2/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc https://buildinfo.debian.net/6390efa1cb01903b851944978aaedfafba4734ca/libgenome_1.3.11+svn20110227.4616-6_amd64 Sat Feb 22 18:33:42 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 18:33:42 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 18:33:42 UTC 2025 I: Removing signed libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc files: removed './b1/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc' removed './b2/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc' 1740249222 amd64 unstable libgenome Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6.rbuild.log: 83.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libgenome_1.3.11+svn20110227.4616-6.rbuild.log.gz [2025-02-22 18:33:43] INFO: Starting at 2025-02-22 18:33:43.121675 [2025-02-22 18:33:43] INFO: Generating the pages of 1 package(s) [2025-02-22 18:33:43] INFO: Finished at 2025-02-22 18:33:43.643909, took: 0:00:00.522241 All cleanup done. Sat Feb 22 18:33:43 UTC 2025 - total duration: 0h 3m 4s. Sat Feb 22 18:33:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-0uJJmbF4, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 17.441s CPU time consumed: 6.928s