Running as unit: rb-build-amd64_28-73048.service; invocation ID: 7ace091b2ea3445aa16b093055f6026c ==================================================================================== Thu Sep 18 21:03:00 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_28) on jenkins, called using "ionos15-amd64 ionos11-amd64" as arguments. Thu Sep 18 21:03:00 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-PwMoJQSB" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 21:03:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Sep 18 21:03:00 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-LZjv6L' Thu Sep 18 21:03:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Sep 18 21:03:00 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-aBmnGs' ok, let's check if ariba is building anywhere yet… ok, ariba is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of ariba in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Thu Sep 18 21:03:17 UTC 2025 I: starting to build ariba/unstable/amd64 on jenkins on '2025-09-18 21:03' Thu Sep 18 21:03:17 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/73048/console.log 1758229397 amd64 unstable ariba Thu Sep 18 21:03:17 UTC 2025 I: Downloading source for unstable/ariba=2.14.7+ds-7 --2025-09-18 21:03:17-- http://deb.debian.org/debian/pool/main/a/ariba/ariba_2.14.7%2bds-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2435 (2.4K) [text/prs.lines.tag] Saving to: ‘ariba_2.14.7+ds-7.dsc’ 0K .. 100% 256M=0s 2025-09-18 21:03:17 (256 MB/s) - ‘ariba_2.14.7+ds-7.dsc’ saved [2435/2435] --2025-09-18 21:03:17-- http://deb.debian.org/debian/pool/main/a/ariba/ariba_2.14.7%2bds-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2435 (2.4K) [text/prs.lines.tag] Saving to: ‘ariba_2.14.7+ds-7.dsc’ 0K .. 100% 256M=0s 2025-09-18 21:03:17 (256 MB/s) - ‘ariba_2.14.7+ds-7.dsc’ saved [2435/2435] Thu Sep 18 21:03:17 UTC 2025 I: ariba_2.14.7+ds-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ariba Binary: ariba Architecture: any Version: 2.14.7+ds-7 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss , Étienne Mollier Homepage: https://github.com/sanger-pathogens/ariba Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ariba Vcs-Git: https://salsa.debian.org/med-team/ariba.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer, python3-pysam, python3-pytest, python3-bs4, python3-matplotlib, python3-tk, bowtie2, cd-hit, mash, libminimap-dev, libfml-dev, mummer, fastaq, help2man, asciidoctor, spades [amd64] Package-List: ariba deb science optional arch=any Checksums-Sha1: 9dbd8c5a23a1dc7349406f1b692b6f648f704674 1919824 ariba_2.14.7+ds.orig.tar.xz 45431fa845c4d8914fed140840c7a1f81a14f362 11480 ariba_2.14.7+ds-7.debian.tar.xz Checksums-Sha256: 17cab969952233e110a58515cb9b2752d58c9a8edc9e930891d07a1a3c2f3fbb 1919824 ariba_2.14.7+ds.orig.tar.xz 193b1e03e7f09d85a2e6b76de615d98401480ba2f261eced3ce17d77c43c4a7b 11480 ariba_2.14.7+ds-7.debian.tar.xz Files: 36818f9fdc447f1c7064089115d41417 1919824 ariba_2.14.7+ds.orig.tar.xz 87dcf00b50444a8f6159dcfdc760e633 11480 ariba_2.14.7+ds-7.debian.tar.xz Dgit: 1eb8f51af603121eecb8f1ec7599e082ba7404bb debian archive/debian/2.14.7+ds-7 https://git.dgit.debian.org/ariba -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmeb8sAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqXURAApFEtJfZtcplWP71Mf/l/f6LNW4Jk gKiSwazon1D6IDUFyWsMeS0c57IzcDO/F1DGJBsjS0CA1Rmh9wAmtZ2iCO+ZxqmW VlkjOvI0K8XU5Uoe0+H2jWCqdEw0xofec1vtBLrpslm7xTdpRiSzQfevA5wh+l6l i8poxBn6vgrHHYvZua8llf6Nd+Puo2EZChqGysA+p4Xctfr6EJglIKqvMEn8xQ5G dwfSx8ELa4ZPLEX0+kTwkEwNedlezHl/5c4IBzNIVDaZ2SVgfyopTfk7tbd9H6DX gpmPZXImzduTWfRlBCQvKCpSlTR4y0B+bQcHXD1xpQwGZdZH/8JT5G5gJMpu6LVv I19njfiv7BLSjp6muFI+QTxPCdYmjsawz8xb38tRxeWY3bF2OeCWWml7lwLWGqsR eSUgGJjjMGvDHaCiqIZfq+kpdl/rrSp2D9DdS4zQRjjSp40Km/p29HtCxFk48rqZ FGAFJpzEYFhqDIaoOs74yjbIQTPvvI0bZqxkAc0V1e0Fr8/69I2VMJSWGCSOMcB9 hePKsLNn/sQkPMVpTsn9WF07Y/WVKdjZ1F8hi8jX0PVI6TFqVhUk7RqvWXBzdum7 1TD0MNdcP92jUm38u6++JQJB2fB6ZC7YfxLUjbZSO7hlEAsDkYn9JPDExJnTX6Hj Z0p6ruki5QzHOGc= =cKp4 -----END PGP SIGNATURE----- Thu Sep 18 21:03:17 UTC 2025 I: Checking whether the package is not for us Thu Sep 18 21:03:17 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu Sep 18 21:03:17 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu Sep 18 21:03:17 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Sep 18 21:03:17 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-bjMTKv' ==================================================================================== Thu Oct 22 03:26:18 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 ariba unstable /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems 2.14.7+ds-7" as arguments. Thu Oct 22 03:26:18 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-FQQ7TiqH" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 22 03:26:18 UTC 2026 I: Downloading source for unstable/ariba=2.14.7+ds-7 Reading package lists... NOTICE: 'ariba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ariba.git Please use: git clone https://salsa.debian.org/med-team/ariba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1934 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (dsc) [2435 B] Get:2 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (tar) [1920 kB] Get:3 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (diff) [11.5 kB] Fetched 1934 kB in 0s (11.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ariba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ariba.git Please use: git clone https://salsa.debian.org/med-team/ariba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1934 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (dsc) [2435 B] Get:2 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (tar) [1920 kB] Get:3 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (diff) [11.5 kB] Fetched 1934 kB in 0s (11.3 MB/s) Download complete and in download only mode ============================================================================= Building ariba in unstable on amd64 on ionos15-amd64 now. Date: Thu Oct 22 03:26:18 UTC 2026 Date UTC: Thu Oct 22 03:26:18 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 21 15:26:18 -12 2026 I: pbuilder-time-stamp: 1792639578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ariba_2.14.7+ds-7.dsc] I: copying [./ariba_2.14.7+ds.orig.tar.xz] I: copying [./ariba_2.14.7+ds-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ariba_2.14.7+ds-7.dsc: no acceptable signature found dpkg-source: info: extracting ariba in ariba-2.14.7+ds dpkg-source: info: unpacking ariba_2.14.7+ds.orig.tar.xz dpkg-source: info: unpacking ariba_2.14.7+ds-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs_for_extension.patch dpkg-source: info: applying use_bwa_compatible_fermi-lite.patch dpkg-source: info: applying add-testdata.patch dpkg-source: info: applying disable-tests-with-internet-access.patch dpkg-source: info: applying support-pymummer-0.11.patch dpkg-source: info: applying run-debian-spades-wrapper.patch dpkg-source: info: applying python3.12.patch dpkg-source: info: applying python3.12_syntax_warning.patch dpkg-source: info: applying py3.13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/443465/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='37049d4664054f8397057013d8256227' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='443465' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/pbuilderrc_C9JW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b1 --logfile b1/build.log ariba_2.14.7+ds-7.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/443465/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer, python3-pysam, python3-pytest, python3-bs4, python3-matplotlib, python3-tk, bowtie2, cd-hit, mash, libminimap-dev, libfml-dev, mummer, fastaq, help2man, asciidoctor, spades dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dendropy; however: Package python3-dendropy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pymummer; however: Package python3-pymummer is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4; however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on libminimap-dev; however: Package libminimap-dev is not installed. pbuilder-satisfydepends-dummy depends on libfml-dev; however: Package libfml-dev is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on fastaq; however: Package fastaq is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. pbuilder-satisfydepends-dummy depends on spades; however: Package spades is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bamtools{a} blt{a} bowtie2{a} bsdextrautils{a} bwa{a} ca-certificates{a} cd-hit{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fastaq{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbamtools2.5.2{a} libblas3{a} libbrotli1{a} libcairo2{a} libcapnp-1.1.0{a} libcom-err2{a} libcurl3t64-gnutls{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libminimap-dev{a} libminimap0{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnlopt0{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} librtmp1{a} libruby{a} libruby3.3{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libssw0{a} libsvtav1enc2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} libyuv0{a} libzopfli1{a} m4{a} man-db{a} mash{a} media-types{a} mummer{a} netbase{a} openssl{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-bs4{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dendropy{a} python3-dev{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pygments{a} python3-pymummer{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-soupsieve{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufolib2{a} python3-yaml{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} rake{a} readline-common{a} ruby{a} ruby-asciidoctor{a} ruby-csv{a} ruby-did-you-mean{a} ruby-net-telnet{a} ruby-ruby2-keywords{a} ruby-rubygems{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.3{a} rubygems-integration{a} samtools{a} sensible-utils{a} sgml-base{a} spades{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra fonts-lato isympy-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libgpm2 libjs-jquery libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx ncbi-blast+ psmisc publicsuffix python-biopython-doc python3-cssselect python3-html5lib python3-olefile python3-pooch python3-psutil ruby-sdbm shared-mime-info wget xdg-user-dirs zip 0 packages upgraded, 245 newly installed, 0 to remove and 0 not upgraded. Need to get 175 MB of archives. After unpacking 669 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 gawk amd64 1:5.3.2-1 [772 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.2-1 [111 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.3-1 [1495 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 rubygems-integration all 1.19 [5488 B] Get: 37 http://deb.debian.org/debian unstable/main amd64 rake all 13.2.1-1 [65.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 ruby-csv all 3.3.4-1 [42.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 ruby-ruby2-keywords all 0.0.5-1 [4300 B] Get: 42 http://deb.debian.org/debian unstable/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libruby3.3 amd64 3.3.8-2 [6301 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 ruby3.3 amd64 3.3.8-2 [834 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 ruby-rubygems all 3.6.7-2 [407 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get: 50 http://deb.debian.org/debian unstable/main amd64 ruby-asciidoctor all 2.0.23-1 [214 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 asciidoctor all 2.0.23-1 [88.7 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6+b1 [161 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 bamtools amd64 2.5.2+dfsg-6+b1 [207 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 71 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 85 http://deb.debian.org/debian unstable/main amd64 bowtie2 amd64 2.5.4-1+b2 [1505 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 bwa amd64 0.7.19-1 [213 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 cd-hit amd64 4.8.1-4 [522 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 111 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.15.1-1 [140 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.15.1-1 [20.9 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.16.0-1 [431 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.22.1+ds2-1 [499 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.22.1-1 [697 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 fastaq all 3.17.0-9 [47.8 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.4-2 [190 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libcapnp-1.1.0 amd64 1.1.0-2 [1479 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.2-1 [165 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libfml0 amd64 0.1+git20221215.85f159e-1 [70.1 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libfml-dev amd64 0.1+git20221215.85f159e-1 [82.0 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-7 [76.3 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 11.5.0-1 [517 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libminimap0 amd64 0.2-8+b3 [22.7 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libminimap-dev amd64 0.2-8+b3 [33.5 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libmurmurhash2 amd64 1.6-1+b1 [6180 B] Get: 166 http://deb.debian.org/debian unstable/main amd64 libnlopt0 amd64 2.7.1-6+b4 [178 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 172 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 mash amd64 2.3+dfsg-6+b2 [192 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.7-1 [108 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 11.3.0-1 [81.1 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-5 [1674 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-soupsieve all 2.7-2 [39.0 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3-bs4 all 4.13.5-1 [114 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 python3-dendropy all 4.6.1-2 [277 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-8 [95.2 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 6.0.1-1 [1434 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.4+dfsg-1 [25.4 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 218 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 unicode-data all 16.0.0-1 [9197 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.57.0-2 [1457 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 228 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 234 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.4.2-5 [216 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-5 [23.8 MB] Get: 239 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 python3-pymummer all 0.11.0-5 [18.1 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-2 [137 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 spades amd64 4.0.0+really3.15.5+dfsg-1 [9243 kB] Fetched 175 MB in 2s (97.0 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Setting up readline-common (8.3-3) ... Setting up libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19949 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.3.2-1_amd64.deb ... Unpacking gawk (1:5.3.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.2-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.2-1) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20491 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21474 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-7_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_15.2.0-4_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-7_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1.2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../006-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../007-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.26_all.deb ... 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Unpacking ruby-xmlrpc (0.3.3-2) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../028-libyaml-0-2_0.2.5-2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-2) ... Selecting previously unselected package libruby3.3:amd64. Preparing to unpack .../029-libruby3.3_3.3.8-2_amd64.deb ... Unpacking libruby3.3:amd64 (3.3.8-2) ... Selecting previously unselected package ruby3.3. Preparing to unpack .../030-ruby3.3_3.3.8-2_amd64.deb ... Unpacking ruby3.3 (3.3.8-2) ... Selecting previously unselected package libruby:amd64. Preparing to unpack .../031-libruby_1%3a3.3+b1_amd64.deb ... Unpacking libruby:amd64 (1:3.3+b1) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../032-ruby-rubygems_3.6.7-2_all.deb ... Unpacking ruby-rubygems (3.6.7-2) ... Selecting previously unselected package ruby. Preparing to unpack .../033-ruby_1%3a3.3+b1_amd64.deb ... Unpacking ruby (1:3.3+b1) ... Selecting previously unselected package ruby-asciidoctor. 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Selecting previously unselected package libbamtools2.5.2:amd64. Preparing to unpack .../041-libbamtools2.5.2_2.5.2+dfsg-6+b1_amd64.deb ... Unpacking libbamtools2.5.2:amd64 (2.5.2+dfsg-6+b1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../042-libjsoncpp26_1.9.6-4_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-4) ... Selecting previously unselected package bamtools. Preparing to unpack .../043-bamtools_2.5.2+dfsg-6+b1_amd64.deb ... Unpacking bamtools (2.5.2+dfsg-6+b1) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../044-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../045-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../046-libpng16-16t64_1.6.50-1_amd64.deb ... 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Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libpython3.13:amd64 (3.13.7-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libavif16:amd64 (1.3.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libfml-dev:amd64 (0.1+git20221215.85f159e-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-5) ... Setting up python3.13 (3.13.7-1) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up python3 (3.13.7-1) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up bowtie2 (2.5.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up python3-fs (2.4.16-8) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up python3-packaging (25.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libpython3.13-dev:amd64 (3.13.7-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up mash (2.3+dfsg-6+b2) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up libminimap-dev:amd64 (0.2-8+b3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up python3-lxml:amd64 (6.0.1-1) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (11.5.0-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-2) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-dendropy (4.6.1-2) ... Setting up python3-soupsieve (2.7-2) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-attr (25.3.0-1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-joblib (1.4.2-5) ... Setting up python3-lz4 (4.4.4+dfsg-1) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3-all (3.13.7-1) ... Setting up python3-yaml (6.0.2-2) ... Setting up rubygems-integration (1.19) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.7-1) ... Setting up python3-bs4 (4.13.5-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-dev (3.13.7-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.15.1-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up libcurl3t64-gnutls:amd64 (8.16.0-1) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.3.0-1) ... Setting up python3-pil.imagetk:amd64 (11.3.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-reportlab (4.4.3-1) ... Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up samtools (1.22.1-1) ... Setting up spades (4.0.0+really3.15.5+dfsg-1) ... Setting up fastaq (3.17.0-9) ... Setting up python3-pymummer (0.11.0-5) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up ruby-rubygems (3.6.7-2) ... Setting up python3-fonttools (4.57.0-2) ... Setting up ruby3.3 (3.3.8-2) ... Setting up python3-matplotlib (3.10.1+dfsg1-5) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up ruby (1:3.3+b1) ... Setting up ruby-asciidoctor (2.0.23-1) ... Setting up rake (13.2.1-1) ... Setting up asciidoctor (2.0.23-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-5) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ariba-2.14.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ariba_2.14.7+ds-7_source.changes dpkg-buildpackage: info: source package ariba dpkg-buildpackage: info: source version 2.14.7+ds-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds' rm -rf /build/reproducible-path/ariba-2.14.7+ds/debian/man dh_auto_clean -- I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension creating build/temp.linux-x86_64-cpython-313/ariba/ext x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.13 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-x86_64-cpython-313/ariba/ext/minimap_ariba.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/ariba/ext/minimap_ariba.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-x86_64-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-x86_64-cpython-313/ariba/ext/fml-asm_ariba.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/ariba/ext/fml-asm_ariba.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-x86_64-linux-gnu.so -lz -lfml building 'vcfcall_ariba' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-x86_64-cpython-313/ariba/ext/vcfcall_ariba.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/ariba/ext/vcfcall_ariba.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/ariba -> build/scripts-3.13 changing mode of build/scripts-3.13/ariba from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/ariba-2.14.7+ds plugins: typeguard-4.4.4 collected 356 items ariba/tests/aln_to_metadata_test.py .................... [ 5%] ariba/tests/assembly_compare_test.py ................ [ 10%] ariba/tests/assembly_test.py ......... [ 12%] ariba/tests/assembly_variants_test.py ........... [ 15%] ariba/tests/bam_parse_test.py ...... [ 17%] ariba/tests/card_record_test.py ........ [ 19%] ariba/tests/cdhit_test.py ................ [ 24%] ariba/tests/cluster_test.py ............................. [ 32%] ariba/tests/clusters_test.py ................ [ 36%] ariba/tests/common_test.py .. [ 37%] ariba/tests/external_progs_test.py . [ 37%] ariba/tests/faidx_test.py . [ 37%] ariba/tests/flag_test.py ....... [ 39%] ariba/tests/histogram_test.py .... [ 41%] ariba/tests/link_test.py ......... [ 43%] ariba/tests/mapping_test.py ....... [ 45%] ariba/tests/megares_data_finder_test.py .. [ 46%] ariba/tests/megares_zip_parser_test.py ..... [ 47%] ariba/tests/mic_plotter_test.py ............. [ 51%] ariba/tests/mlst_profile_test.py .... [ 52%] ariba/tests/mlst_reporter_test.py ..... [ 53%] ariba/tests/pubmlst_getter_test.py ... [ 54%] ariba/tests/pubmlst_ref_preparer_test.py .. [ 55%] ariba/tests/read_filter_test.py . [ 55%] ariba/tests/read_store_test.py ....... [ 57%] ariba/tests/ref_genes_getter_test.py . [ 57%] ariba/tests/ref_preparer_test.py ..... [ 58%] ariba/tests/ref_seq_chooser_test.py ....... [ 60%] ariba/tests/reference_data_test.py .............................. [ 69%] ariba/tests/report_filter_test.py ................. [ 74%] ariba/tests/report_flag_expander_test.py . [ 74%] ariba/tests/samtools_variants_test.py ....... [ 76%] ariba/tests/scaffold_graph_test.py ..... [ 77%] ariba/tests/sequence_metadata_test.py ..... [ 79%] ariba/tests/sequence_variant_test.py ....... [ 81%] ariba/tests/summary_cluster_test.py ....................... [ 87%] ariba/tests/summary_cluster_variant_test.py .... [ 88%] ariba/tests/summary_sample_test.py .... [ 89%] ariba/tests/summary_test.py .................... [ 95%] ariba/tests/tb_test.py ....... [ 97%] ariba/tests/test_refdata_query.py ..... [ 98%] ariba/tests/versions_test.py . [ 99%] ariba/tests/vfdb_parser_test.py ... [100%] =============================== warnings summary =============================== ariba/__init__.py:1 /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'} __version__ = Distribution().from_name('pyfastaq').version .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:222: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed in 3.11. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap()`` or ``pyplot.get_cmap()`` instead. cmap = cmx.get_cmap(colormap) .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:206: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed in 3.11. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap()`` or ``pyplot.get_cmap()`` instead. cmap = cmx.get_cmap(colormap) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 356 passed, 6 warnings in 180.81s (0:03:00) ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/ariba/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/ariba-2.14.7+ds/debian/ariba /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/tb_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/link_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/versions_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/common_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/flag_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/samtools_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cdhit.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/bam_parse.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/reference_data.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/histogram.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_profile.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_data_finder.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/vfdb_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_flag_expander.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_reporter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_sample.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_compare.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/refdata_query.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/link.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/clusters.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/card_record.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/scaffold_graph.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/faidx.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mic_plotter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_store.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/getref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/micplot.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/refquery.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/run.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/external_progs.py to external_progs.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/flag.py to flag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mapping.py to mapping.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/link_test.py to link_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/common_test.py to common_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/versions.py to versions.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/reference_data.py to reference_data.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/clusters.py to clusters.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/link.py to link.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/refdata_query.py to refdata_query.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_filter.py to report_filter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/flag.py to flag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/getref.py to getref.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/refquery.py to refquery.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/test.py to test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/run.py to run.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/micplot.py to micplot.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_sample.py to summary_sample.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cdhit.py to cdhit.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cluster.py to cluster.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/bam_parse.py to bam_parse.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_store.py to read_store.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/faidx.py to faidx.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report.py to report.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_filter.py to read_filter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/histogram.py to histogram.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb.py to tb.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/card_record.py to card_record.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly.py to assembly.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-313.pyc running install_egg_info running egg_info creating ariba.egg-info writing ariba.egg-info/PKG-INFO writing dependency_links to ariba.egg-info/dependency_links.txt writing requirements to ariba.egg-info/requires.txt writing top-level names to ariba.egg-info/top_level.txt writing manifest file 'ariba.egg-info/SOURCES.txt' reading manifest file 'ariba.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'third_party' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ariba.egg-info/SOURCES.txt' Copying ariba.egg-info to /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba-2.14.6.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin copying build/scripts-3.13/ariba -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin changing mode of /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin/ariba to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds' mkdir -p /build/reproducible-path/ariba-2.14.7+ds/debian/man asciidoctor -a docdate='' -b manpage -o /build/reproducible-path/ariba-2.14.7+ds/debian/man/ariba.1 /build/reproducible-path/ariba-2.14.7+ds/debian/ariba.1.adoc dh_installman -- make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds' dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/ariba/usr/bin/ariba dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'ariba' in '../ariba_2.14.7+ds-7_amd64.deb'. dpkg-deb: building package 'ariba-dbgsym' in '../ariba-dbgsym_2.14.7+ds-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ariba_2.14.7+ds-7_amd64.buildinfo dpkg-genchanges --build=binary -O../ariba_2.14.7+ds-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem Failed to get properties: Transport endpoint is not connected I: cleaning the build env I: removing directory /srv/workspace/pbuilder/443465 and its subdirectories I: Current time: Wed Oct 21 15:33:47 -12 2026 I: pbuilder-time-stamp: 1792640027 Thu Oct 22 03:33:47 UTC 2026 I: Signing ./b1/ariba_2.14.7+ds-7_amd64.buildinfo as ariba_2.14.7+ds-7_amd64.buildinfo.asc Thu Oct 22 03:33:47 UTC 2026 I: Signed ./b1/ariba_2.14.7+ds-7_amd64.buildinfo as ./b1/ariba_2.14.7+ds-7_amd64.buildinfo.asc Thu Oct 22 03:33:47 UTC 2026 - build #1 for ariba/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Thu Oct 22 03:33:47 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-FQQ7TiqH, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems: total 16 -rw-rw-r-- 1 jenkins jenkins 2435 Jan 30 2025 ariba_2.14.7+ds-7.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 21:10 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 21:03 b2 -rw------- 1 jenkins jenkins 3545 Sep 18 21:03 rbuildlog.kCKPDs4 /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b1: total 2864 -rw-r--r-- 1 jenkins jenkins 440076 Sep 18 21:10 ariba-dbgsym_2.14.7+ds-7_amd64.deb -rw-r--r-- 1 jenkins jenkins 11480 Sep 18 21:10 ariba_2.14.7+ds-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2435 Sep 18 21:10 ariba_2.14.7+ds-7.dsc -rw-r--r-- 1 jenkins jenkins 11393 Sep 18 21:10 ariba_2.14.7+ds-7_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 12275 Sep 18 21:10 ariba_2.14.7+ds-7_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1416 Sep 18 21:10 ariba_2.14.7+ds-7_amd64.changes -rw-r--r-- 1 jenkins jenkins 1957524 Sep 18 21:10 ariba_2.14.7+ds-7_amd64.deb -rw-r--r-- 1 jenkins jenkins 1277 Sep 18 21:10 ariba_2.14.7+ds-7_source.changes -rw-r--r-- 1 jenkins jenkins 481734 Sep 18 21:10 build.log /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b2: total 0 Thu Sep 18 21:10:47 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 21 15:26:18 -12 2026 I: pbuilder-time-stamp: 1792639578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ariba_2.14.7+ds-7.dsc] I: copying [./ariba_2.14.7+ds.orig.tar.xz] I: copying [./ariba_2.14.7+ds-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ariba_2.14.7+ds-7.dsc: no acceptable signature found dpkg-source: info: extracting ariba in ariba-2.14.7+ds dpkg-source: info: unpacking ariba_2.14.7+ds.orig.tar.xz dpkg-source: info: unpacking ariba_2.14.7+ds-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs_for_extension.patch dpkg-source: info: applying use_bwa_compatible_fermi-lite.patch dpkg-source: info: applying add-testdata.patch dpkg-source: info: applying disable-tests-with-internet-access.patch dpkg-source: info: applying support-pymummer-0.11.patch dpkg-source: info: applying run-debian-spades-wrapper.patch dpkg-source: info: applying python3.12.patch dpkg-source: info: applying python3.12_syntax_warning.patch dpkg-source: info: applying py3.13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/443465/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='37049d4664054f8397057013d8256227' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='443465' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/pbuilderrc_C9JW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b1 --logfile b1/build.log ariba_2.14.7+ds-7.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/443465/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer, python3-pysam, python3-pytest, python3-bs4, python3-matplotlib, python3-tk, bowtie2, cd-hit, mash, libminimap-dev, libfml-dev, mummer, fastaq, help2man, asciidoctor, spades dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dendropy; however: Package python3-dendropy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pymummer; however: Package python3-pymummer is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4; however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on libminimap-dev; however: Package libminimap-dev is not installed. pbuilder-satisfydepends-dummy depends on libfml-dev; however: Package libfml-dev is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on fastaq; however: Package fastaq is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. pbuilder-satisfydepends-dummy depends on spades; however: Package spades is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bamtools{a} blt{a} bowtie2{a} bsdextrautils{a} bwa{a} ca-certificates{a} cd-hit{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fastaq{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbamtools2.5.2{a} libblas3{a} libbrotli1{a} libcairo2{a} libcapnp-1.1.0{a} libcom-err2{a} libcurl3t64-gnutls{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libminimap-dev{a} libminimap0{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnlopt0{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} librtmp1{a} libruby{a} libruby3.3{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libssw0{a} libsvtav1enc2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} libyuv0{a} libzopfli1{a} m4{a} man-db{a} mash{a} media-types{a} mummer{a} netbase{a} openssl{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-bs4{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dendropy{a} python3-dev{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pygments{a} python3-pymummer{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-soupsieve{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufolib2{a} python3-yaml{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} rake{a} readline-common{a} ruby{a} ruby-asciidoctor{a} ruby-csv{a} ruby-did-you-mean{a} ruby-net-telnet{a} ruby-ruby2-keywords{a} ruby-rubygems{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.3{a} rubygems-integration{a} samtools{a} sensible-utils{a} sgml-base{a} spades{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra fonts-lato isympy-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libgpm2 libjs-jquery libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx ncbi-blast+ psmisc publicsuffix python-biopython-doc python3-cssselect python3-html5lib python3-olefile python3-pooch python3-psutil ruby-sdbm shared-mime-info wget xdg-user-dirs zip 0 packages upgraded, 245 newly installed, 0 to remove and 0 not upgraded. Need to get 175 MB of archives. After unpacking 669 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 gawk amd64 1:5.3.2-1 [772 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.2-1 [111 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.3-1 [1495 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 rubygems-integration all 1.19 [5488 B] Get: 37 http://deb.debian.org/debian unstable/main amd64 rake all 13.2.1-1 [65.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 ruby-csv all 3.3.4-1 [42.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 ruby-ruby2-keywords all 0.0.5-1 [4300 B] Get: 42 http://deb.debian.org/debian unstable/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libruby3.3 amd64 3.3.8-2 [6301 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 ruby3.3 amd64 3.3.8-2 [834 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 ruby-rubygems all 3.6.7-2 [407 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get: 50 http://deb.debian.org/debian unstable/main amd64 ruby-asciidoctor all 2.0.23-1 [214 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 asciidoctor all 2.0.23-1 [88.7 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6+b1 [161 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 bamtools amd64 2.5.2+dfsg-6+b1 [207 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 71 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 85 http://deb.debian.org/debian unstable/main amd64 bowtie2 amd64 2.5.4-1+b2 [1505 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 bwa amd64 0.7.19-1 [213 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 cd-hit amd64 4.8.1-4 [522 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 111 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.15.1-1 [140 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.15.1-1 [20.9 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.16.0-1 [431 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.22.1+ds2-1 [499 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.22.1-1 [697 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 fastaq all 3.17.0-9 [47.8 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.4-2 [190 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libcapnp-1.1.0 amd64 1.1.0-2 [1479 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.2-1 [165 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libfml0 amd64 0.1+git20221215.85f159e-1 [70.1 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libfml-dev amd64 0.1+git20221215.85f159e-1 [82.0 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-7 [76.3 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 11.5.0-1 [517 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libminimap0 amd64 0.2-8+b3 [22.7 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libminimap-dev amd64 0.2-8+b3 [33.5 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libmurmurhash2 amd64 1.6-1+b1 [6180 B] Get: 166 http://deb.debian.org/debian unstable/main amd64 libnlopt0 amd64 2.7.1-6+b4 [178 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 172 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 mash amd64 2.3+dfsg-6+b2 [192 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.7-1 [108 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 11.3.0-1 [81.1 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-5 [1674 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-soupsieve all 2.7-2 [39.0 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3-bs4 all 4.13.5-1 [114 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 python3-dendropy all 4.6.1-2 [277 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-8 [95.2 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 6.0.1-1 [1434 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.4+dfsg-1 [25.4 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 218 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 unicode-data all 16.0.0-1 [9197 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.57.0-2 [1457 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 228 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 234 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.4.2-5 [216 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-5 [23.8 MB] Get: 239 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 python3-pymummer all 0.11.0-5 [18.1 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-2 [137 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 spades amd64 4.0.0+really3.15.5+dfsg-1 [9243 kB] Fetched 175 MB in 2s (97.0 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Setting up readline-common (8.3-3) ... Setting up libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19949 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.3.2-1_amd64.deb ... Unpacking gawk (1:5.3.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.2-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.2-1) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libgpg-error0:amd64 (1.55-2) ... Setting up libgslcblas0:amd64 (2.8+dfsg-5.1) ... Setting up libmurmurhash2:amd64 (1.6-1+b1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gawk (1:5.3.2-1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up bwa (0.7.19-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up fonts-lyx (2.4.4-2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libgcrypt20:amd64 (1.11.2-2) ... Setting up libqhull-r8.0:amd64 (2020.2-7) ... Setting up libnlopt0:amd64 (2.7.1-6+b4) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libfml0:amd64 (0.1+git20221215.85f159e-1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 22 03:27:07 UTC 2026. Universal Time is now: Thu Oct 22 03:27:07 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... Setting up libminimap0:amd64 (0.2-8+b3) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.7.2-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libncurses6:amd64 (6.5+20250216-2) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up ruby-csv (3.3.4-1) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... 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Setting up libxslt1.1:amd64 (1.1.43-0.2) ... Setting up mummer (3.23+dfsg-8) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.15.1-1) ... Setting up sgml-base (1.31+nmu1) ... Setting up libcapnp-1.1.0:amd64 (1.1.0-2) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up ruby-did-you-mean (1.6.3-2) ... Setting up libgsl28:amd64 (2.8+dfsg-5.1) ... Setting up python-matplotlib-data (3.10.1+dfsg1-5) ... Setting up openssl (3.5.3-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libyuv0:amd64 (0.0.1916.20250814-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libssw0:amd64 (1.1-15+b2) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libpython3.13:amd64 (3.13.7-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libavif16:amd64 (1.3.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libfml-dev:amd64 (0.1+git20221215.85f159e-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-5) ... Setting up python3.13 (3.13.7-1) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up python3 (3.13.7-1) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up bowtie2 (2.5.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up python3-fs (2.4.16-8) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up python3-packaging (25.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libpython3.13-dev:amd64 (3.13.7-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up mash (2.3+dfsg-6+b2) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up libminimap-dev:amd64 (0.2-8+b3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up python3-lxml:amd64 (6.0.1-1) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (11.5.0-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-2) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-dendropy (4.6.1-2) ... Setting up python3-soupsieve (2.7-2) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-attr (25.3.0-1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-joblib (1.4.2-5) ... Setting up python3-lz4 (4.4.4+dfsg-1) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3-all (3.13.7-1) ... Setting up python3-yaml (6.0.2-2) ... Setting up rubygems-integration (1.19) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.7-1) ... Setting up python3-bs4 (4.13.5-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-dev (3.13.7-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.15.1-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up libcurl3t64-gnutls:amd64 (8.16.0-1) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.3.0-1) ... Setting up python3-pil.imagetk:amd64 (11.3.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-reportlab (4.4.3-1) ... Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up samtools (1.22.1-1) ... Setting up spades (4.0.0+really3.15.5+dfsg-1) ... Setting up fastaq (3.17.0-9) ... Setting up python3-pymummer (0.11.0-5) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up ruby-rubygems (3.6.7-2) ... Setting up python3-fonttools (4.57.0-2) ... Setting up ruby3.3 (3.3.8-2) ... Setting up python3-matplotlib (3.10.1+dfsg1-5) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up ruby (1:3.3+b1) ... Setting up ruby-asciidoctor (2.0.23-1) ... Setting up rake (13.2.1-1) ... Setting up asciidoctor (2.0.23-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-5) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ariba-2.14.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ariba_2.14.7+ds-7_source.changes dpkg-buildpackage: info: source package ariba dpkg-buildpackage: info: source version 2.14.7+ds-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds' rm -rf /build/reproducible-path/ariba-2.14.7+ds/debian/man dh_auto_clean -- I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension creating build/temp.linux-x86_64-cpython-313/ariba/ext x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.13 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-x86_64-cpython-313/ariba/ext/minimap_ariba.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/ariba/ext/minimap_ariba.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-x86_64-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-x86_64-cpython-313/ariba/ext/fml-asm_ariba.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/ariba/ext/fml-asm_ariba.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-x86_64-linux-gnu.so -lz -lfml building 'vcfcall_ariba' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-x86_64-cpython-313/ariba/ext/vcfcall_ariba.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/ariba/ext/vcfcall_ariba.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/ariba -> build/scripts-3.13 changing mode of build/scripts-3.13/ariba from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/ariba-2.14.7+ds plugins: typeguard-4.4.4 collected 356 items ariba/tests/aln_to_metadata_test.py .................... [ 5%] ariba/tests/assembly_compare_test.py ................ [ 10%] ariba/tests/assembly_test.py ......... [ 12%] ariba/tests/assembly_variants_test.py ........... [ 15%] ariba/tests/bam_parse_test.py ...... [ 17%] ariba/tests/card_record_test.py ........ [ 19%] ariba/tests/cdhit_test.py ................ [ 24%] ariba/tests/cluster_test.py ............................. [ 32%] ariba/tests/clusters_test.py ................ [ 36%] ariba/tests/common_test.py .. [ 37%] ariba/tests/external_progs_test.py . [ 37%] ariba/tests/faidx_test.py . [ 37%] ariba/tests/flag_test.py ....... [ 39%] ariba/tests/histogram_test.py .... [ 41%] ariba/tests/link_test.py ......... [ 43%] ariba/tests/mapping_test.py ....... [ 45%] ariba/tests/megares_data_finder_test.py .. [ 46%] ariba/tests/megares_zip_parser_test.py ..... [ 47%] ariba/tests/mic_plotter_test.py ............. [ 51%] ariba/tests/mlst_profile_test.py .... [ 52%] ariba/tests/mlst_reporter_test.py ..... [ 53%] ariba/tests/pubmlst_getter_test.py ... [ 54%] ariba/tests/pubmlst_ref_preparer_test.py .. [ 55%] ariba/tests/read_filter_test.py . [ 55%] ariba/tests/read_store_test.py ....... [ 57%] ariba/tests/ref_genes_getter_test.py . [ 57%] ariba/tests/ref_preparer_test.py ..... [ 58%] ariba/tests/ref_seq_chooser_test.py ....... [ 60%] ariba/tests/reference_data_test.py .............................. [ 69%] ariba/tests/report_filter_test.py ................. [ 74%] ariba/tests/report_flag_expander_test.py . [ 74%] ariba/tests/samtools_variants_test.py ....... [ 76%] ariba/tests/scaffold_graph_test.py ..... [ 77%] ariba/tests/sequence_metadata_test.py ..... [ 79%] ariba/tests/sequence_variant_test.py ....... [ 81%] ariba/tests/summary_cluster_test.py ....................... [ 87%] ariba/tests/summary_cluster_variant_test.py .... [ 88%] ariba/tests/summary_sample_test.py .... [ 89%] ariba/tests/summary_test.py .................... [ 95%] ariba/tests/tb_test.py ....... [ 97%] ariba/tests/test_refdata_query.py ..... [ 98%] ariba/tests/versions_test.py . [ 99%] ariba/tests/vfdb_parser_test.py ... [100%] =============================== warnings summary =============================== ariba/__init__.py:1 /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'} __version__ = Distribution().from_name('pyfastaq').version .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:222: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed in 3.11. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap()`` or ``pyplot.get_cmap()`` instead. cmap = cmx.get_cmap(colormap) .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:206: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed in 3.11. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap()`` or ``pyplot.get_cmap()`` instead. cmap = cmx.get_cmap(colormap) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 356 passed, 6 warnings in 180.81s (0:03:00) ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/ariba/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/ariba-2.14.7+ds/debian/ariba /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/tb_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/link_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/versions_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/common_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/flag_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/samtools_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cdhit.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/bam_parse.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/reference_data.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/histogram.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_profile.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_data_finder.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/vfdb_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_flag_expander.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_reporter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_sample.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_compare.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/refdata_query.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/link.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/clusters.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/card_record.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/scaffold_graph.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/faidx.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mic_plotter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_store.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/getref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/micplot.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/refquery.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/run.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/external_progs.py to external_progs.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/flag.py to flag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mapping.py to mapping.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/link_test.py to link_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/common_test.py to common_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/versions.py to versions.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/reference_data.py to reference_data.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/clusters.py to clusters.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/link.py to link.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/refdata_query.py to refdata_query.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_filter.py to report_filter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/flag.py to flag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/getref.py to getref.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/refquery.py to refquery.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/test.py to test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/run.py to run.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/micplot.py to micplot.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_sample.py to summary_sample.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cdhit.py to cdhit.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cluster.py to cluster.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/bam_parse.py to bam_parse.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_store.py to read_store.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/faidx.py to faidx.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report.py to report.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_filter.py to read_filter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/histogram.py to histogram.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb.py to tb.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/card_record.py to card_record.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly.py to assembly.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-313.pyc running install_egg_info running egg_info creating ariba.egg-info writing ariba.egg-info/PKG-INFO writing dependency_links to ariba.egg-info/dependency_links.txt writing requirements to ariba.egg-info/requires.txt writing top-level names to ariba.egg-info/top_level.txt writing manifest file 'ariba.egg-info/SOURCES.txt' reading manifest file 'ariba.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'third_party' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ariba.egg-info/SOURCES.txt' Copying ariba.egg-info to /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba-2.14.6.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin copying build/scripts-3.13/ariba -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin changing mode of /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin/ariba to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds' mkdir -p /build/reproducible-path/ariba-2.14.7+ds/debian/man asciidoctor -a docdate='' -b manpage -o /build/reproducible-path/ariba-2.14.7+ds/debian/man/ariba.1 /build/reproducible-path/ariba-2.14.7+ds/debian/ariba.1.adoc dh_installman -- make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds' dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/ariba/usr/bin/ariba dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'ariba' in '../ariba_2.14.7+ds-7_amd64.deb'. dpkg-deb: building package 'ariba-dbgsym' in '../ariba-dbgsym_2.14.7+ds-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ariba_2.14.7+ds-7_amd64.buildinfo dpkg-genchanges --build=binary -O../ariba_2.14.7+ds-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem Failed to get properties: Transport endpoint is not connected I: cleaning the build env I: removing directory /srv/workspace/pbuilder/443465 and its subdirectories I: Current time: Wed Oct 21 15:33:47 -12 2026 I: pbuilder-time-stamp: 1792640027 Thu Sep 18 21:10:47 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Sep 18 21:10:47 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Sep 18 21:10:47 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Sep 18 21:10:47 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-glUNbX' ==================================================================================== Thu Sep 18 21:10:48 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 ariba unstable /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems 2.14.7+ds-7" as arguments. Thu Sep 18 21:10:48 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-P8XWkO5l" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 21:10:48 UTC 2025 I: Downloading source for unstable/ariba=2.14.7+ds-7 Reading package lists... NOTICE: 'ariba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ariba.git Please use: git clone https://salsa.debian.org/med-team/ariba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1934 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (dsc) [2435 B] Get:2 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (tar) [1920 kB] Get:3 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (diff) [11.5 kB] Fetched 1934 kB in 0s (14.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ariba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ariba.git Please use: git clone https://salsa.debian.org/med-team/ariba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1934 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (dsc) [2435 B] Get:2 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (tar) [1920 kB] Get:3 http://deb.debian.org/debian unstable/main ariba 2.14.7+ds-7 (diff) [11.5 kB] Fetched 1934 kB in 0s (14.5 MB/s) Download complete and in download only mode ============================================================================= Re-Building ariba in unstable on amd64 on ionos11-amd64 now. Date: Thu Sep 18 21:10:48 UTC 2025 Date UTC: Thu Sep 18 21:10:48 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/pbuilderrc_zREh + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' ariba = debian-installer -o ariba = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' ariba = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/pbuilderrc_zREh --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b2 --logfile b2/build.log ariba_2.14.7+ds-7.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 19 11:10:49 +14 2025 I: pbuilder-time-stamp: 1758229849 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ariba_2.14.7+ds-7.dsc] I: copying [./ariba_2.14.7+ds.orig.tar.xz] I: copying [./ariba_2.14.7+ds-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ariba_2.14.7+ds-7.dsc: no acceptable signature found dpkg-source: info: extracting ariba in ariba-2.14.7+ds dpkg-source: info: unpacking ariba_2.14.7+ds.orig.tar.xz dpkg-source: info: unpacking ariba_2.14.7+ds-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs_for_extension.patch dpkg-source: info: applying use_bwa_compatible_fermi-lite.patch dpkg-source: info: applying add-testdata.patch dpkg-source: info: applying disable-tests-with-internet-access.patch dpkg-source: info: applying support-pymummer-0.11.patch dpkg-source: info: applying run-debian-spades-wrapper.patch dpkg-source: info: applying python3.12.patch dpkg-source: info: applying python3.12_syntax_warning.patch dpkg-source: info: applying py3.13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 18 21:11 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=0f86a3b21349466c8005e138bdfc6364 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2553311 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/pbuilderrc_zREh --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b2 --logfile b2/build.log ariba_2.14.7+ds-7.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-biopython, python3-all-dev, python3-dendropy, python3-setuptools, python3-pymummer, python3-pysam, python3-pytest, python3-bs4, python3-matplotlib, python3-tk, bowtie2, cd-hit, mash, libminimap-dev, libfml-dev, mummer, fastaq, help2man, asciidoctor, spades dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dendropy; however: Package python3-dendropy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pymummer; however: Package python3-pymummer is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4; however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on libminimap-dev; however: Package libminimap-dev is not installed. pbuilder-satisfydepends-dummy depends on libfml-dev; however: Package libfml-dev is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on fastaq; however: Package fastaq is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. pbuilder-satisfydepends-dummy depends on spades; however: Package spades is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bamtools{a} blt{a} bowtie2{a} bsdextrautils{a} bwa{a} ca-certificates{a} cd-hit{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fastaq{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbamtools2.5.2{a} libblas3{a} libbrotli1{a} libcairo2{a} libcapnp-1.1.0{a} libcom-err2{a} libcurl3t64-gnutls{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libminimap-dev{a} libminimap0{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnlopt0{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} librtmp1{a} libruby{a} libruby3.3{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libssw0{a} libsvtav1enc2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} libyuv0{a} libzopfli1{a} m4{a} man-db{a} mash{a} media-types{a} mummer{a} netbase{a} openssl{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-bs4{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dendropy{a} python3-dev{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pygments{a} python3-pymummer{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-soupsieve{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufolib2{a} python3-yaml{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} rake{a} readline-common{a} ruby{a} ruby-asciidoctor{a} ruby-csv{a} ruby-did-you-mean{a} ruby-net-telnet{a} ruby-ruby2-keywords{a} ruby-rubygems{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.3{a} rubygems-integration{a} samtools{a} sensible-utils{a} sgml-base{a} spades{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra fonts-lato isympy-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libgpm2 libjs-jquery libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx ncbi-blast+ psmisc publicsuffix python-biopython-doc python3-cssselect python3-html5lib python3-olefile python3-pooch python3-psutil ruby-sdbm shared-mime-info wget xdg-user-dirs zip 0 packages upgraded, 245 newly installed, 0 to remove and 0 not upgraded. Need to get 175 MB of archives. After unpacking 669 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 gawk amd64 1:5.3.2-1 [772 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.2-1 [111 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.3-1 [1495 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 rubygems-integration all 1.19 [5488 B] Get: 37 http://deb.debian.org/debian unstable/main amd64 rake all 13.2.1-1 [65.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 ruby-csv all 3.3.4-1 [42.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 ruby-ruby2-keywords all 0.0.5-1 [4300 B] Get: 42 http://deb.debian.org/debian unstable/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libruby3.3 amd64 3.3.8-2 [6301 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 ruby3.3 amd64 3.3.8-2 [834 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 ruby-rubygems all 3.6.7-2 [407 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get: 50 http://deb.debian.org/debian unstable/main amd64 ruby-asciidoctor all 2.0.23-1 [214 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 asciidoctor all 2.0.23-1 [88.7 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6+b1 [161 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 bamtools amd64 2.5.2+dfsg-6+b1 [207 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 71 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 85 http://deb.debian.org/debian unstable/main amd64 bowtie2 amd64 2.5.4-1+b2 [1505 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 bwa amd64 0.7.19-1 [213 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 cd-hit amd64 4.8.1-4 [522 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 111 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.15.1-1 [140 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.15.1-1 [20.9 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.16.0-1 [431 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.22.1+ds2-1 [499 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.22.1-1 [697 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 fastaq all 3.17.0-9 [47.8 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.4-2 [190 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libcapnp-1.1.0 amd64 1.1.0-2 [1479 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.2-1 [165 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libfml0 amd64 0.1+git20221215.85f159e-1 [70.1 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libfml-dev amd64 0.1+git20221215.85f159e-1 [82.0 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-7 [76.3 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 11.5.0-1 [517 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libminimap0 amd64 0.2-8+b3 [22.7 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libminimap-dev amd64 0.2-8+b3 [33.5 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libmurmurhash2 amd64 1.6-1+b1 [6180 B] Get: 166 http://deb.debian.org/debian unstable/main amd64 libnlopt0 amd64 2.7.1-6+b4 [178 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 172 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 mash amd64 2.3+dfsg-6+b2 [192 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.7-1 [108 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 11.3.0-1 [81.1 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-5 [1674 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-soupsieve all 2.7-2 [39.0 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3-bs4 all 4.13.5-1 [114 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 python3-dendropy all 4.6.1-2 [277 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-8 [95.2 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 6.0.1-1 [1434 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.4+dfsg-1 [25.4 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 218 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 unicode-data all 16.0.0-1 [9197 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.57.0-2 [1457 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 228 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 234 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.4.2-5 [216 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-5 [23.8 MB] Get: 239 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 python3-pymummer all 0.11.0-5 [18.1 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-2 [137 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 spades amd64 4.0.0+really3.15.5+dfsg-1 [9243 kB] Fetched 175 MB in 44s (3993 kB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Setting up readline-common (8.3-3) ... Setting up libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19949 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.3.2-1_amd64.deb ... Unpacking gawk (1:5.3.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.2-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.2-1) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20491 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... 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Unpacking python3-pytest (8.4.2-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../228-python3-yaml_6.0.2-2_amd64.deb ... Unpacking python3-yaml (6.0.2-2) ... Selecting previously unselected package spades. Preparing to unpack .../229-spades_4.0.0+really3.15.5+dfsg-1_amd64.deb ... Unpacking spades (4.0.0+really3.15.5+dfsg-1) ... Setting up cd-hit (4.8.1-4) ... Setting up libhtscodecs2:amd64 (1.6.1-2) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-7) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libaom3:amd64 (3.12.1-1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up ruby-ruby2-keywords (0.0.5-1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libgpg-error0:amd64 (1.55-2) ... Setting up libgslcblas0:amd64 (2.8+dfsg-5.1) ... Setting up libmurmurhash2:amd64 (1.6-1+b1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gawk (1:5.3.2-1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up bwa (0.7.19-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up fonts-lyx (2.4.4-2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libgcrypt20:amd64 (1.11.2-2) ... Setting up libqhull-r8.0:amd64 (2020.2-7) ... Setting up libnlopt0:amd64 (2.7.1-6+b4) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libfml0:amd64 (0.1+git20221215.85f159e-1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Sep 18 21:17:13 UTC 2025. Universal Time is now: Thu Sep 18 21:17:13 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... Setting up libminimap0:amd64 (0.2-8+b3) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.7.2-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libncurses6:amd64 (6.5+20250216-2) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up ruby-csv (3.3.4-1) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-6+b1) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.11.0-1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up ruby-webrick (1.9.1-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up libdav1d7:amd64 (1.5.1-1) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:amd64 (4.7.0-5) ... Setting up bamtools (2.5.2+dfsg-6+b1) ... Setting up librav1e0.7:amd64 (0.7.1-9+b2) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libxslt1.1:amd64 (1.1.43-0.2) ... Setting up mummer (3.23+dfsg-8) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.15.1-1) ... Setting up sgml-base (1.31+nmu1) ... Setting up libcapnp-1.1.0:amd64 (1.1.0-2) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up ruby-did-you-mean (1.6.3-2) ... Setting up libgsl28:amd64 (2.8+dfsg-5.1) ... Setting up python-matplotlib-data (3.10.1+dfsg1-5) ... Setting up openssl (3.5.3-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libyuv0:amd64 (0.0.1916.20250814-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libssw0:amd64 (1.1-15+b2) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libpython3.13:amd64 (3.13.7-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libavif16:amd64 (1.3.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libfml-dev:amd64 (0.1+git20221215.85f159e-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-5) ... Setting up python3.13 (3.13.7-1) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up python3 (3.13.7-1) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up bowtie2 (2.5.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up python3-fs (2.4.16-8) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up python3-packaging (25.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libpython3.13-dev:amd64 (3.13.7-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up mash (2.3+dfsg-6+b2) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up libminimap-dev:amd64 (0.2-8+b3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up python3-lxml:amd64 (6.0.1-1) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (11.5.0-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-2) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-dendropy (4.6.1-2) ... Setting up python3-soupsieve (2.7-2) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-attr (25.3.0-1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-joblib (1.4.2-5) ... Setting up python3-lz4 (4.4.4+dfsg-1) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3-all (3.13.7-1) ... Setting up python3-yaml (6.0.2-2) ... Setting up rubygems-integration (1.19) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.7-1) ... Setting up python3-bs4 (4.13.5-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-dev (3.13.7-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.15.1-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up libcurl3t64-gnutls:amd64 (8.16.0-1) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.3.0-1) ... Setting up python3-pil.imagetk:amd64 (11.3.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-reportlab (4.4.3-1) ... Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up samtools (1.22.1-1) ... Setting up spades (4.0.0+really3.15.5+dfsg-1) ... Setting up fastaq (3.17.0-9) ... Setting up python3-pymummer (0.11.0-5) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up ruby-rubygems (3.6.7-2) ... Setting up python3-fonttools (4.57.0-2) ... Setting up ruby3.3 (3.3.8-2) ... Setting up python3-matplotlib (3.10.1+dfsg1-5) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up ruby (1:3.3+b1) ... Setting up ruby-asciidoctor (2.0.23-1) ... Setting up rake (13.2.1-1) ... Setting up asciidoctor (2.0.23-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-5) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ariba-2.14.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ariba_2.14.7+ds-7_source.changes dpkg-buildpackage: info: source package ariba dpkg-buildpackage: info: source version 2.14.7+ds-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds' rm -rf /build/reproducible-path/ariba-2.14.7+ds/debian/man dh_auto_clean -- I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension creating build/temp.linux-x86_64-cpython-313/ariba/ext x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.13 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-x86_64-cpython-313/ariba/ext/minimap_ariba.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/ariba/ext/minimap_ariba.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-x86_64-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-x86_64-cpython-313/ariba/ext/fml-asm_ariba.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/ariba/ext/fml-asm_ariba.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-x86_64-linux-gnu.so -lz -lfml building 'vcfcall_ariba' extension x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-x86_64-cpython-313/ariba/ext/vcfcall_ariba.o x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/ariba-2.14.7+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/ariba/ext/vcfcall_ariba.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/ariba -> build/scripts-3.13 changing mode of build/scripts-3.13/ariba from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/ariba-2.14.7+ds plugins: typeguard-4.4.4 collected 356 items ariba/tests/aln_to_metadata_test.py .................... [ 5%] ariba/tests/assembly_compare_test.py ................ [ 10%] ariba/tests/assembly_test.py ......... [ 12%] ariba/tests/assembly_variants_test.py ........... [ 15%] ariba/tests/bam_parse_test.py ...... [ 17%] ariba/tests/card_record_test.py ........ [ 19%] ariba/tests/cdhit_test.py ................ [ 24%] ariba/tests/cluster_test.py ............................. [ 32%] ariba/tests/clusters_test.py ................ [ 36%] ariba/tests/common_test.py .. [ 37%] ariba/tests/external_progs_test.py . [ 37%] ariba/tests/faidx_test.py . [ 37%] ariba/tests/flag_test.py ....... [ 39%] ariba/tests/histogram_test.py .... [ 41%] ariba/tests/link_test.py ......... [ 43%] ariba/tests/mapping_test.py ....... [ 45%] ariba/tests/megares_data_finder_test.py .. [ 46%] ariba/tests/megares_zip_parser_test.py ..... [ 47%] ariba/tests/mic_plotter_test.py ............. [ 51%] ariba/tests/mlst_profile_test.py .... [ 52%] ariba/tests/mlst_reporter_test.py ..... [ 53%] ariba/tests/pubmlst_getter_test.py ... [ 54%] ariba/tests/pubmlst_ref_preparer_test.py .. [ 55%] ariba/tests/read_filter_test.py . [ 55%] ariba/tests/read_store_test.py ....... [ 57%] ariba/tests/ref_genes_getter_test.py . [ 57%] ariba/tests/ref_preparer_test.py ..... [ 58%] ariba/tests/ref_seq_chooser_test.py ....... [ 60%] ariba/tests/reference_data_test.py .............................. [ 69%] ariba/tests/report_filter_test.py ................. [ 74%] ariba/tests/report_flag_expander_test.py . [ 74%] ariba/tests/samtools_variants_test.py ....... [ 76%] ariba/tests/scaffold_graph_test.py ..... [ 77%] ariba/tests/sequence_metadata_test.py ..... [ 79%] ariba/tests/sequence_variant_test.py ....... [ 81%] ariba/tests/summary_cluster_test.py ....................... [ 87%] ariba/tests/summary_cluster_variant_test.py .... [ 88%] ariba/tests/summary_sample_test.py .... [ 89%] ariba/tests/summary_test.py .................... [ 95%] ariba/tests/tb_test.py ....... [ 97%] ariba/tests/test_refdata_query.py ..... [ 98%] ariba/tests/versions_test.py . [ 99%] ariba/tests/vfdb_parser_test.py ... [100%] =============================== warnings summary =============================== ariba/__init__.py:1 /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'read_text', 'locate_file'} __version__ = Distribution().from_name('pyfastaq').version .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:222: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed in 3.11. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap()`` or ``pyplot.get_cmap()`` instead. cmap = cmx.get_cmap(colormap) .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py:206: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed in 3.11. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap()`` or ``pyplot.get_cmap()`` instead. cmap = cmx.get_cmap(colormap) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 356 passed, 6 warnings in 73.28s (0:01:13) ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/ariba/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/ariba-2.14.7+ds/debian/ariba /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 (GPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/versions_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/tb_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/common_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/link_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/flag_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/samtools_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_store.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/card_record.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_flag_expander.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_sample.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/reference_data.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_data_finder.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_reporter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/histogram.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/link.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/clusters.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/refdata_query.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_compare.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cdhit.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/vfdb_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/scaffold_graph.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/bam_parse.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/faidx.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mic_plotter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_profile.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/refquery.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/getref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/micplot.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/run.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/link.py to link.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/histogram.py to histogram.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mapping.py to mapping.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb.py to tb.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_store.py to read_store.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_filter.py to report_filter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly.py to assembly.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/versions.py to versions.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/common_test.py to common_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/link_test.py to link_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/card_record.py to card_record.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/refdata_query.py to refdata_query.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/reference_data.py to reference_data.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/faidx.py to faidx.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report.py to report.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cluster.py to cluster.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/external_progs.py to external_progs.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cdhit.py to cdhit.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/flag.py to flag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/bam_parse.py to bam_parse.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/micplot.py to micplot.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/test.py to test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/flag.py to flag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/refquery.py to refquery.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/run.py to run.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/getref.py to getref.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_filter.py to read_filter.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/clusters.py to clusters.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_sample.py to summary_sample.cpython-313.pyc running install_egg_info running egg_info creating ariba.egg-info writing ariba.egg-info/PKG-INFO writing dependency_links to ariba.egg-info/dependency_links.txt writing requirements to ariba.egg-info/requires.txt writing top-level names to ariba.egg-info/top_level.txt writing manifest file 'ariba.egg-info/SOURCES.txt' reading manifest file 'ariba.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'third_party' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ariba.egg-info/SOURCES.txt' Copying ariba.egg-info to /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba-2.14.6.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin copying build/scripts-3.13/ariba -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin changing mode of /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/bin/ariba to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/ariba-2.14.7+ds' mkdir -p /build/reproducible-path/ariba-2.14.7+ds/debian/man asciidoctor -a docdate='' -b manpage -o /build/reproducible-path/ariba-2.14.7+ds/debian/man/ariba.1 /build/reproducible-path/ariba-2.14.7+ds/debian/ariba.1.adoc dh_installman -- make[1]: Leaving directory '/build/reproducible-path/ariba-2.14.7+ds' dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/ariba/usr/bin/ariba dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'ariba-dbgsym' in '../ariba-dbgsym_2.14.7+ds-7_amd64.deb'. dpkg-deb: building package 'ariba' in '../ariba_2.14.7+ds-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ariba_2.14.7+ds-7_amd64.buildinfo dpkg-genchanges --build=binary -O../ariba_2.14.7+ds-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2553311 and its subdirectories I: Current time: Fri Sep 19 11:20:09 +14 2025 I: pbuilder-time-stamp: 1758230409 + false + set +x Thu Sep 18 21:20:09 UTC 2025 I: Signing ./b2/ariba_2.14.7+ds-7_amd64.buildinfo as ariba_2.14.7+ds-7_amd64.buildinfo.asc Thu Sep 18 21:20:09 UTC 2025 I: Signed ./b2/ariba_2.14.7+ds-7_amd64.buildinfo as ./b2/ariba_2.14.7+ds-7_amd64.buildinfo.asc Thu Sep 18 21:20:09 UTC 2025 - build #2 for ariba/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Thu Sep 18 21:20:09 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-P8XWkO5l, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems: total 492 -rw-rw-r-- 1 jenkins jenkins 2435 Jan 30 2025 ariba_2.14.7+ds-7.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 21:10 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 21:20 b2 -rw------- 1 jenkins jenkins 485568 Sep 18 21:10 rbuildlog.kCKPDs4 /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b1: total 2876 -rw-r--r-- 1 jenkins jenkins 440076 Sep 18 21:10 ariba-dbgsym_2.14.7+ds-7_amd64.deb -rw-r--r-- 1 jenkins jenkins 11480 Sep 18 21:10 ariba_2.14.7+ds-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2435 Sep 18 21:10 ariba_2.14.7+ds-7.dsc -rw-r--r-- 1 jenkins jenkins 11393 Sep 18 21:10 ariba_2.14.7+ds-7_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 12275 Sep 18 21:10 ariba_2.14.7+ds-7_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1416 Sep 18 21:10 ariba_2.14.7+ds-7_amd64.changes -rw-r--r-- 1 jenkins jenkins 1957524 Sep 18 21:10 ariba_2.14.7+ds-7_amd64.deb -rw-r--r-- 1 jenkins jenkins 1277 Sep 18 21:10 ariba_2.14.7+ds-7_source.changes -rw-r--r-- 1 jenkins jenkins 481734 Sep 18 21:10 build.log /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b2: total 2868 -rw-r--r-- 1 jenkins jenkins 440076 Sep 18 21:20 ariba-dbgsym_2.14.7+ds-7_amd64.deb -rw-r--r-- 1 jenkins jenkins 11480 Sep 18 21:20 ariba_2.14.7+ds-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2435 Sep 18 21:20 ariba_2.14.7+ds-7.dsc -rw-rw-r-- 1 jenkins jenkins 11393 Sep 18 21:20 ariba_2.14.7+ds-7_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 12275 Sep 18 21:20 ariba_2.14.7+ds-7_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1416 Sep 18 21:20 ariba_2.14.7+ds-7_amd64.changes -rw-r--r-- 1 jenkins jenkins 1957524 Sep 18 21:20 ariba_2.14.7+ds-7_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1277 Sep 18 21:20 ariba_2.14.7+ds-7_source.changes -rw-rw-r-- 1 jenkins jenkins 483603 Sep 18 21:20 build.log Thu Sep 18 21:20:09 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Sep 18 21:20:10 UTC 2025 I: ariba_2.14.7+ds-7_amd64.changes: Format: 1.8 Date: Thu, 30 Jan 2025 22:22:05 +0100 Source: ariba Binary: ariba ariba-dbgsym Architecture: amd64 Version: 2.14.7+ds-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: ariba - Antibiotic Resistance Identification By Assembly Closes: 1094725 Changes: ariba (2.14.7+ds-7) unstable; urgency=medium . * d/control: add missing dependency on python3-pkg-resources. (Closes: #1094725) Checksums-Sha1: b945b6dd8b9fc0c07521f5ecb0be41b561aaf35d 440076 ariba-dbgsym_2.14.7+ds-7_amd64.deb 40cd72ff7b9df9a388d4264e3b945f99c589623e 11393 ariba_2.14.7+ds-7_amd64.buildinfo 1356ed8a25163bf9f7d31ce36723dfd57dc5cdc6 1957524 ariba_2.14.7+ds-7_amd64.deb Checksums-Sha256: 0300828acf40eaf9969f6b647976bbedd6256fbb0346294b0b1fe5eec2a5d752 440076 ariba-dbgsym_2.14.7+ds-7_amd64.deb 0df008a92c4d2ea533c94b421b0cade36dbbf62c86e12903f75e08a41d4d923d 11393 ariba_2.14.7+ds-7_amd64.buildinfo 2b0313debcfe3c453a8af12414ba8de8a3a48bb6d4e7e97cc942cc23815dce54 1957524 ariba_2.14.7+ds-7_amd64.deb Files: 4e6f6b711f8cc6658b5c37bee5cc2974 440076 debug optional ariba-dbgsym_2.14.7+ds-7_amd64.deb fee194e573a737ed298f219acd847a99 11393 science optional ariba_2.14.7+ds-7_amd64.buildinfo e9fd625b416b959a121d054c943e3280 1957524 science optional ariba_2.14.7+ds-7_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/ariba_2.14.7+ds-7.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/ariba_2.14.7+ds-7.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/ariba_2.14.7+ds-7.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/ariba_2.14.7+ds-7.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/ariba_2.14.7+ds-7_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/ariba_2.14.7+ds-7.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-18 21:10:47.435516111 +0000 +++ b2/build.log 2025-09-18 21:20:09.952305918 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Oct 21 15:26:18 -12 2026 -I: pbuilder-time-stamp: 1792639578 +I: Current time: Fri Sep 19 11:10:49 +14 2025 +I: pbuilder-time-stamp: 1758229849 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -32,53 +32,85 @@ dpkg-source: info: applying py3.13.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/443465/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 18 21:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='37049d4664054f8397057013d8256227' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='443465' - PS1='# ' - PS2='> ' + INVOCATION_ID=0f86a3b21349466c8005e138bdfc6364 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2553311 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/pbuilderrc_C9JW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b1 --logfile b1/build.log ariba_2.14.7+ds-7.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/pbuilderrc_zREh --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b2 --logfile b2/build.log ariba_2.14.7+ds-7.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/443465/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -401,7 +433,7 @@ Get: 243 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-2 [137 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 spades amd64 4.0.0+really3.15.5+dfsg-1 [9243 kB] -Fetched 175 MB in 2s (97.0 MB/s) +Fetched 175 MB in 44s (3993 kB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -1204,8 +1236,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Oct 22 03:27:07 UTC 2026. -Universal Time is now: Thu Oct 22 03:27:07 UTC 2026. +Local time is now: Thu Sep 18 21:17:13 UTC 2025. +Universal Time is now: Thu Sep 18 21:17:13 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... @@ -1422,7 +1454,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ariba-2.14.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ariba_2.14.7+ds-7_source.changes +I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ariba-2.14.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ariba_2.14.7+ds-7_source.changes dpkg-buildpackage: info: source package ariba dpkg-buildpackage: info: source version 2.14.7+ds-7 dpkg-buildpackage: info: source distribution unstable @@ -1506,789 +1542,789 @@ running build running build_py creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba copying ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba -copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba +copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests copying ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests -copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests +copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks -copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks +copying ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data -copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data +copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data -copying ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data -copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data -copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data +copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data -copying ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data +copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data -copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data +copying ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data +copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data +copying ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon -copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon -copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon +copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon +copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail -copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail +copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch -copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch +copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars -copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars -copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars +copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars +copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa -copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa +copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail -copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail +copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering -copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering +copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir +copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir -copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only -copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only +copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon -copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon -copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon +copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon +copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension @@ -2363,7 +2399,7 @@ from pkg_resources import get_distribution ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 - /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'} + /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'read_text', 'locate_file'} __version__ = Distribution().from_name('pyfastaq').version .pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py::TestMicPlotter::test_get_colours @@ -2377,7 +2413,7 @@ cmap = cmx.get_cmap(colormap) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================= 356 passed, 6 warnings in 180.81s (0:03:00) ================== +================== 356 passed, 6 warnings in 73.28s (0:01:13) ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -2420,1009 +2456,1009 @@ running build_scripts running install_lib creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/vcfcall_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mapping.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/test_run_data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/versions_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/tb_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/common_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/link_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/tb_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/link_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/versions_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/common_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/flag_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__pycache__ creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/megares_zip_parser_write_files +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/samtools_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_store.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/card_record.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_flag_expander.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_sample.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cdhit.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/bam_parse.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/reference_data.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/histogram.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_profile.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_data_finder.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/vfdb_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_flag_expander.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_reporter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_sample.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_compare.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/refdata_query.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/histogram.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/link.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/clusters.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/card_record.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_variants.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/refdata_query.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/assembly_compare.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/cdhit.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/vfdb_parser.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/scaffold_graph.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/bam_parse.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/faidx.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_metadata.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/report_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mic_plotter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/sequence_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_store.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/read_filter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__pycache__/mlst_profile.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/getref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/micplot.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/refquery.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/run.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/flag.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/getref.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/micplot.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/run.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-313.pyc -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/external_progs.py to external_progs.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/flag.py to flag.cpython-313.pyc +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/fermilite_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages +copying /build/reproducible-path/ariba-2.14.7+ds/.pybuild/cpython3_3.13_ariba/build/minimap_ariba.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/link.py to link.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/histogram.py to histogram.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mapping.py to mapping.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/common.py to common.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb.py to tb.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_store.py to read_store.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_filter.py to report_filter.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly.py to assembly.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/versions.py to versions.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/link_test.py to link_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/common_test.py to common_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/common_test.py to common_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/link_test.py to link_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/versions.py to versions.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/reference_data.py to reference_data.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/clusters.py to clusters.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/link.py to link.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary.py to summary.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/card_record.py to card_record.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/refdata_query.py to refdata_query.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/reference_data.py to reference_data.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/faidx.py to faidx.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report.py to report.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/common.py to common.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cluster.py to cluster.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_filter.py to report_filter.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary.py to summary.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/flag.py to flag.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/version.py to version.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/external_progs.py to external_progs.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cdhit.py to cdhit.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/flag.py to flag.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/bam_parse.py to bam_parse.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/micplot.py to micplot.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/getref.py to getref.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/refquery.py to refquery.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/test.py to test.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/summary.py to summary.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/run.py to run.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/micplot.py to micplot.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_sample.py to summary_sample.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cdhit.py to cdhit.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/cluster.py to cluster.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/bam_parse.py to bam_parse.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_store.py to read_store.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/faidx.py to faidx.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/report.py to report.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/flag.py to flag.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/refquery.py to refquery.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/version.py to version.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/run.py to run.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tasks/getref.py to getref.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/read_filter.py to read_filter.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/histogram.py to histogram.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/tb.py to tb.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/card_record.py to card_record.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/clusters.py to clusters.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-313.pyc byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly.py to assembly.cpython-313.pyc -byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-313.pyc +byte-compiling /build/reproducible-path/ariba-2.14.7+ds/debian/ariba/usr/lib/python3.13/dist-packages/ariba/summary_sample.py to summary_sample.cpython-313.pyc running install_egg_info running egg_info creating ariba.egg-info @@ -3468,8 +3504,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'ariba' in '../ariba_2.14.7+ds-7_amd64.deb'. dpkg-deb: building package 'ariba-dbgsym' in '../ariba-dbgsym_2.14.7+ds-7_amd64.deb'. +dpkg-deb: building package 'ariba' in '../ariba_2.14.7+ds-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ariba_2.14.7+ds-7_amd64.buildinfo dpkg-genchanges --build=binary -O../ariba_2.14.7+ds-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3477,13 +3513,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2553311/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem -Failed to get properties: Transport endpoint is not connected I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/443465 and its subdirectories -I: Current time: Wed Oct 21 15:33:47 -12 2026 -I: pbuilder-time-stamp: 1792640027 +I: removing directory /srv/workspace/pbuilder/2553311 and its subdirectories +I: Current time: Fri Sep 19 11:20:09 +14 2025 +I: pbuilder-time-stamp: 1758230409 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/ariba_2.14.7+ds-7.diff: 95.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/ariba_2.14.7+ds-7.diff.gz b2/build.log: 92.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 92.5% -- replaced with stdout Thu Sep 18 21:20:11 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_ariba_unstable_amd64_1758230411 + touch /var/log/reproducible-builds/diffoscope_stamp_ariba_unstable_amd64_1758230411 + RESULT=0 + systemd-run '--description=diffoscope on ariba/2.14.7+ds-7 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_28-73048 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems --run-session -c jenkins-reproducible-unstable-diffoscope-cab2dc41-6535-4bfa-bb2d-cc36bd3c3323 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/dbd-tmp-TChgXtb ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/ariba_2.14.7+ds-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/ariba_2.14.7+ds-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/ariba_2.14.7+ds-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b1/ariba_2.14.7+ds-7_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b2/ariba_2.14.7+ds-7_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_28-73048.service; invocation ID: 76dc4a39dc2a40bf83b047b54563b92d # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/ariba_2.14.7+ds-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/ariba_2.14.7+ds-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/ariba_2.14.7+ds-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b1/ariba_2.14.7+ds-7_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Ne1rQems/b2/ariba_2.14.7+ds-7_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 201ms CPU time consumed: 171ms Memory peak: 17.5M (swap: 0B) _ _ __ _ _ __(_) |__ __ _ / _` | '__| | '_ \ / _` | | (_| | | | | |_) | (_| | \__,_|_| |_|_.__/ \__,_| Thu Sep 18 21:20:12 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 18 21:20:12 UTC 2025 I: ariba from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-18 21:20:12] INFO: Starting at 2025-09-18 21:20:12.816507 [2025-09-18 21:20:12] INFO: Generating the pages of 1 package(s) [2025-09-18 21:20:13] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/ariba didn't produce a buildlog, even though it has been built. [2025-09-18 21:20:13] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/ariba didn't produce a buildlog, even though it has been built. [2025-09-18 21:20:13] INFO: Finished at 2025-09-18 21:20:13.379334, took: 0:00:00.562830 Thu Sep 18 21:20:13 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/ariba.html Thu Sep 18 21:20:13 UTC 2025 I: Removing signed ariba_2.14.7+ds-7_amd64.buildinfo.asc files: removed './b1/ariba_2.14.7+ds-7_amd64.buildinfo.asc' removed './b2/ariba_2.14.7+ds-7_amd64.buildinfo.asc' 1758230413 amd64 unstable ariba Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/ariba_2.14.7+ds-7.rbuild.log: 91.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/ariba_2.14.7+ds-7.rbuild.log.gz [2025-09-18 21:20:13] INFO: Starting at 2025-09-18 21:20:13.717285 [2025-09-18 21:20:13] INFO: Generating the pages of 1 package(s) [2025-09-18 21:20:14] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/ariba didn't produce a buildlog, even though it has been built. [2025-09-18 21:20:14] INFO: Finished at 2025-09-18 21:20:14.254383, took: 0:00:00.537102 All cleanup done. Thu Sep 18 21:20:14 UTC 2025 - total duration: 0h 17m 12s. Thu Sep 18 21:20:14 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-PwMoJQSB, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 17min 14.086s CPU time consumed: 3.989s Memory peak: 71.9M (swap: 0B)