Running as unit: rb-build-amd64_29-54678.service; invocation ID: 40f198ba1b10448482f085424992ca79 ==================================================================================== Sun Sep 14 23:20:46 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_29) on jenkins, called using "ionos1-amd64 ionos15-amd64" as arguments. Sun Sep 14 23:20:46 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-hTeCny7G" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 23:20:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sun Sep 14 23:20:46 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-7A8wG5' Sun Sep 14 23:20:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sun Sep 14 23:20:46 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ghZlZf' ok, let's check if augur is building anywhere yet… ok, augur is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of augur in unstable on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Sun Sep 14 23:21:01 UTC 2025 I: starting to build augur/unstable/amd64 on jenkins on '2025-09-14 23:20' Sun Sep 14 23:21:01 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/54678/console.log 1757892061 amd64 unstable augur Sun Sep 14 23:21:01 UTC 2025 I: Downloading source for unstable/augur=24.4.0-2 --2025-09-14 23:21:02-- http://deb.debian.org/debian/pool/main/a/augur/augur_24.4.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2494 (2.4K) [text/prs.lines.tag] Saving to: ‘augur_24.4.0-2.dsc’ 0K .. 100% 265M=0s 2025-09-14 23:21:02 (265 MB/s) - ‘augur_24.4.0-2.dsc’ saved [2494/2494] --2025-09-14 23:21:02-- http://deb.debian.org/debian/pool/main/a/augur/augur_24.4.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2494 (2.4K) [text/prs.lines.tag] Saving to: ‘augur_24.4.0-2.dsc’ 0K .. 100% 265M=0s 2025-09-14 23:21:02 (265 MB/s) - ‘augur_24.4.0-2.dsc’ saved [2494/2494] Sun Sep 14 23:21:02 UTC 2025 I: augur_24.4.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: augur Binary: augur Architecture: all Version: 24.4.0-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/nextstrain/augur Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/augur Vcs-Git: https://salsa.debian.org/med-team/augur.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, mafft, python3-all, python3-setuptools, python3-pytest , python3-pytest-mock , python3-biopython , python3-jsonschema , python3-networkx , python3-packaging , python3-pandas , python3-pyfastx , python3-treetime (>= 0.9.4) , python3-typeshed , python3-freezegun , python3-isodate , python3-zstandard , vcftools , python3-xopen (>= 1.7.0-1~) Package-List: augur deb science optional arch=all Checksums-Sha1: 5141dd14e307e94101a5a1697c92962583719738 6802265 augur_24.4.0.orig.tar.gz 233d487b16804a6e6efec915a9f5b09597a1df12 16532 augur_24.4.0-2.debian.tar.xz Checksums-Sha256: 054aeafe72e60828e6168e9ea5bc9bfd6fa7665f0b5684ca6663ccfbd2d4f34b 6802265 augur_24.4.0.orig.tar.gz 5811f900745b0d901dbb998bb5200acf243b06bebd5b8b6c8a058fa72037d624 16532 augur_24.4.0-2.debian.tar.xz Files: 50d43c5099edf9c39d42b6044528716d 6802265 augur_24.4.0.orig.tar.gz 183772f82f54d74d5240bd627bedd8e4 16532 augur_24.4.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmjFQjASHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+biPckP+QGe0zf0jjybbVFqlxjJKCc0FLMmPfwl dsFCJ/Gt2/YXxfImvW6vJkXkA4TVPTaNQ8A6WFuRpX+ifRxUIX250tx/3EX9vxLz GGtgSRLH2HMJrRnn/MMMi4Tt1Uy4CuevU+m2fNaOlW8nvuQXOFrQN3/FS1uBmogY DnbN/HHlJRpRVcZZwUiEfDgRiMvxnbPXjYePF/BKjF2+SXkfRBNxVN5hIU+5YMPI hE2HQ311/89FzI17POvdrQxc9U8y8j/uQ4Wcd+QoSGCsPkuzZMdiR40/jpnz5c3m +3xt3VmmCRsSvjIqOdlLLw6zX0a6lM4MOxL/JmfXebw/XpQorjY+UqVR1UBTtzqQ HCRN64lwoBW4WSYLrMjYn6RV3dRGRb7xnZtjJSIbHdk35R0JEXSo7Fgf6XvV1eZJ rjc7xXLXV5geF2P4v3DtjmpBXdBfOaxbdM1u+axX6MdbnoJW9S1WBNUHQQFBiEmJ 53My8flgh2DE4lzDNJ14f3d1TRe3K1mKRv+BA5kYIV1F2x5zUicj+CnPITryNWe+ 0eAgiyqY6ODgP4y9VQDYnSC2D31cAW9Ps4Jkk8C+kxu4I1GFqa6OLmqRTZmHHuYG +CHI+s4Ee2lPOtGEf8G3s7LvtPi/KRnhLBqIFXq6RaGW8tKoetRlqfcWwmeIktCF 0LJNBs3qWhFP =9CVD -----END PGP SIGNATURE----- Sun Sep 14 23:21:02 UTC 2025 I: Checking whether the package is not for us Sun Sep 14 23:21:02 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sun Sep 14 23:21:02 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sun Sep 14 23:21:02 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sun Sep 14 23:21:02 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-SMY9U5' ==================================================================================== Sun Sep 14 23:21:02 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 augur unstable /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4 24.4.0-2" as arguments. Sun Sep 14 23:21:02 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-t9qYZUcW" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 23:21:02 UTC 2025 I: Downloading source for unstable/augur=24.4.0-2 Reading package lists... NOTICE: 'augur' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/augur.git Please use: git clone https://salsa.debian.org/med-team/augur.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6821 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (dsc) [2494 B] Get:2 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (tar) [6802 kB] Get:3 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (diff) [16.5 kB] Fetched 6821 kB in 0s (69.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'augur' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/augur.git Please use: git clone https://salsa.debian.org/med-team/augur.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6821 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (dsc) [2494 B] Get:2 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (tar) [6802 kB] Get:3 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (diff) [16.5 kB] Fetched 6821 kB in 0s (69.1 MB/s) Download complete and in download only mode ============================================================================= Building augur in unstable on amd64 on ionos1-amd64 now. Date: Sun Sep 14 23:21:03 UTC 2025 Date UTC: Sun Sep 14 23:21:03 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 11:21:03 -12 2025 I: pbuilder-time-stamp: 1757892063 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [augur_24.4.0-2.dsc] I: copying [./augur_24.4.0.orig.tar.gz] I: copying [./augur_24.4.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./augur_24.4.0-2.dsc: no acceptable signature found dpkg-source: info: extracting augur in augur-24.4.0 dpkg-source: info: unpacking augur_24.4.0.orig.tar.gz dpkg-source: info: unpacking augur_24.4.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying missing-imports.patch dpkg-source: info: applying pandas-2.2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/478675/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='295719652f4542deafaa508ea9bf4b01' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='478675' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/pbuilderrc_XiUT --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b1 --logfile b1/build.log augur_24.4.0-2.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/478675/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, mafft, python3-all, python3-setuptools, python3-pytest, python3-pytest-mock, python3-biopython, python3-jsonschema, python3-networkx, python3-packaging, python3-pandas, python3-pyfastx, python3-treetime (>= 0.9.4), python3-typeshed, python3-freezegun, python3-isodate, python3-zstandard, vcftools, python3-xopen (>= 1.7.0-1~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-packaging; however: Package python3-packaging is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pyfastx; however: Package python3-pyfastx is not installed. pbuilder-satisfydepends-dummy depends on python3-treetime (>= 0.9.4); however: Package python3-treetime is not installed. pbuilder-satisfydepends-dummy depends on python3-typeshed; however: Package python3-typeshed is not installed. pbuilder-satisfydepends-dummy depends on python3-freezegun; however: Package python3-freezegun is not installed. pbuilder-satisfydepends-dummy depends on python3-isodate; however: Package python3-isodate is not installed. pbuilder-satisfydepends-dummy depends on python3-zstandard; however: Package python3-zstandard is not installed. pbuilder-satisfydepends-dummy depends on vcftools; however: Package vcftools is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen (>= 1.7.0-1~); however: Package python3-xopen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyuv0{a} libzopfli1{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-freezegun{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-isodate{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyfaidx{a} python3-pyfastx{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-mock{a} python3-pytz{a} python3-referencing{a} python3-reportlab{a} python3-rlpycairo{a} python3-rpds-py{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-treetime{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-ufolib2{a} python3-xopen{a} python3-zipp{a} python3-zopfli{a} python3-zstandard{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} vcftools{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl libwww-perl lynx ncbi-blast+ python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-fqdn python3-gdal python3-html5lib python3-idna python3-isal python3-isoduration python3-jinja2 python3-json-pointer python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pydot python3-pygraphviz python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-tables python3-tz python3-uritemplate python3-webcolors python3-yaml ruby shared-mime-info tabix wget xdg-user-dirs 0 packages upgraded, 180 newly installed, 0 to remove and 0 not upgraded. Need to get 154 MB of archives. After unpacking 628 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 pigz amd64 2.8-1 [62.7 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 47 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.4-1 [190 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-7 [76.3 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 11.4.5-1 [505 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 mafft amd64 7.525-1 [1186 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.7-1 [108 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 11.3.0-1 [81.1 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-5 [1674 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-8 [95.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 6.0.1-1 [1434 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.4+dfsg-1 [25.4 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 unicode-data all 16.0.0-1 [9197 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.57.0-2 [1457 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-freezegun all 1.5.1-1.2 [17.2 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-isodate all 0.7.2-1 [19.5 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 158 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.21.0-2+b1 [257 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.36.2-1 [23.7 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 161 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-5 [23.8 MB] Get: 166 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get: 167 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2025.2-3 [152 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 python3-pyfaidx all 0.8.1.3-2 [29.1 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 python3-pyfastx amd64 2.2.0-1+b1 [58.1 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 python3-pytest-mock all 3.15.0-1 [18.6 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 python3-treetime all 0.11.4-1 [938 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 python3-typeshed all 0.0~git20241223.ea91db2-4 [1531 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-zstandard amd64 0.24.0-1 [351 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 vcftools amd64 0.1.17-1 [468 kB] Fetched 154 MB in 7s (21.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package pigz. Preparing to unpack .../archives/pigz_2.8-1_amd64.deb ... Unpacking pigz (2.8-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20260 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... 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Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libgcrypt20:amd64 (1.11.2-2) ... Setting up libqhull-r8.0:amd64 (2020.2-7) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Sep 14 23:24:09 UTC 2025. Universal Time is now: Sun Sep 14 23:24:09 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up autoconf (2.72-3.1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... 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Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-5) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (11.4.5-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.7-1) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up python3-fs (2.4.16-8) ... Setting up python3-isodate (0.7.2-1) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-xopen (1.7.0-3) ... Setting up python3-zstandard (0.24.0-1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-typeshed (0.0~git20241223.ea91db2-4) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-rpds-py (0.21.0-2+b1) ... Setting up python3-lxml:amd64 (6.0.1-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-freezegun (1.5.1-1.2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-pyfaidx (0.8.1.3-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-attr (25.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-lz4 (4.4.4+dfsg-1) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-pyfastx (2.2.0-1+b1) ... Setting up python3-all (3.13.7-1) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-pytz (2025.2-3) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.3.0-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-pandas (2.2.3+dfsg-9) ... Setting up python3-pil.imagetk:amd64 (11.3.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.4.3-1) ... Setting up python3-pytest-mock (3.15.0-1) ... Setting up python3-referencing (0.36.2-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up python3-fonttools (4.57.0-2) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-5) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-5) ... Setting up python3-treetime (0.11.4-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/augur-24.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../augur_24.4.0-2_source.changes dpkg-buildpackage: info: source package augur dpkg-buildpackage: info: source version 24.4.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pytest_cache nextstrain_augur.egg-info make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/refine.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/mask.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/tree.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/titers.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/index.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/types.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__version__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/validate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/align.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/version.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/lbi.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/parse.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__main__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/clades.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/distance.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/utils.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/translate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/filenames.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/json.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/print.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ copying augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ copying augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' cp -v mypy.ini /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : 'mypy.ini' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' cp -v .flake8 /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : '.flake8' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not (test_mypy or test_flake8)' ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/augur-24.4.0 plugins: mock-3.15.0, typeguard-4.4.4 collected 351 items / 2 deselected / 349 selected tests/dates/test_ambiguous_date.py ............................. [ 8%] tests/dates/test_dates.py ....... [ 10%] tests/filter/test_relative_dates.py ................ [ 14%] tests/filter/test_subsample.py ................ [ 19%] tests/io/test_file.py ............. [ 23%] tests/io/test_metadata.py .......................................... [ 35%] tests/io/test_sequences.py .................... [ 40%] tests/io/test_shell_command_runner.py .......... [ 43%] tests/io/test_strains.py . [ 44%] tests/io/test_vcf.py ....... [ 46%] tests/test_align.py ............................................... [ 59%] tests/test_ancestral.py ... [ 60%] tests/test_clades.py ......... [ 63%] tests/test_frequencies.py ........................ [ 69%] tests/test_mask.py ....................................... [ 81%] tests/test_parse.py ... [ 81%] tests/test_schemas.py .......... [ 84%] tests/test_titer_models.py . [ 85%] tests/test_translate.py .. [ 85%] tests/test_utils.py .......... [ 88%] tests/test_validate.py ................... [ 93%] tests/test_validate_export.py .. [ 94%] tests/util_support/test_color_parser.py .... [ 95%] tests/util_support/test_node_data.py ... [ 96%] tests/util_support/test_node_data_file.py ...... [ 98%] tests/util_support/test_node_data_reader.py ...... [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.13/build/tests/test_validate.py: 10 warnings .pybuild/cpython3_3.13/build/tests/util_support/test_node_data_file.py: 2 warnings /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py:65: DeprecationWarning: Accessing Draft6Validator.resolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. schema_validator.resolver.resolve_remote = resolve_remote -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =============== 349 passed, 2 deselected, 12 warnings in 31.63s ================ debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini && : removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8 && : removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/augur/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/augur-24.4.0/debian/augur /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/json.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/print.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/shell_command_runner.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/vcf.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/strains.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/metadata.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/print.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/refine.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser_line.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_reader.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/concat.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/mask.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/sequence_traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/index.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequency_estimators.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titer_model.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/tree.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/argparse_.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/reconstruct_sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__version__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/ancestral.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate_export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v1.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/lbi.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titers.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/types.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/mask.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/clades.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/translate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v2.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/align.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/refine.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequencies.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/passthru.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates_directives.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/titlecase.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/normalize_strings.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/tree.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titers.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/index.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/types.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__version__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/align.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/version.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/lbi.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/beast.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/parse.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/_run.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/subsample.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/include_exclude_rules.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/ambiguous_date.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__main__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/clades.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/distance.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/utils.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/translate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filenames.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequencies.py to frequencies.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/json.py to json.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/shell_command_runner.py to shell_command_runner.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/vcf.py to vcf.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/file.py to file.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/print.py to print.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/metadata.py to metadata.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/sequences.py to sequences.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/strains.py to strains.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/refine.py to refine.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_reader.py to node_data_reader.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser.py to color_parser.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_file.py to node_data_file.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data.py to node_data.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser_line.py to color_parser_line.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/export.py to export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/concat.py to concat.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/mask.py to mask.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequency_estimators.py to frequency_estimators.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/passthru.py to passthru.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates.py to format_dates.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/titlecase.py to titlecase.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/normalize_strings.py to normalize_strings.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates_directives.py to format_dates_directives.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/tree.py to tree.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titers.py to titers.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/index.py to index.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/types.py to types.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__version__.py to __version__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/ancestral.py to ancestral.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate.py to validate.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/align.py to align.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/reconstruct_sequences.py to reconstruct_sequences.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/traits.py to traits.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export.py to export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/argparse_.py to argparse_.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate_export.py to validate_export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/lbi.py to lbi.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/beast.py to beast.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/sequence_traits.py to sequence_traits.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/parse.py to parse.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titer_model.py to titer_model.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/constants.py to constants.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/include_exclude_rules.py to include_exclude_rules.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/subsample.py to subsample.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/validate_arguments.py to validate_arguments.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/_run.py to _run.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/ambiguous_date.py to ambiguous_date.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/clades.py to clades.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/distance.py to distance.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v1.py to export_v1.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/translate.py to translate.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v2.py to export_v2.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filenames.py to filenames.cpython-313.pyc running install_egg_info running egg_info creating nextstrain_augur.egg-info writing nextstrain_augur.egg-info/PKG-INFO writing dependency_links to nextstrain_augur.egg-info/dependency_links.txt writing entry points to nextstrain_augur.egg-info/entry_points.txt writing requirements to nextstrain_augur.egg-info/requires.txt writing top-level names to nextstrain_augur.egg-info/top_level.txt writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.nextstrain-cli' adding license file 'LICENSE.txt' writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' Copying nextstrain_augur.egg-info to /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/nextstrain_augur-24.4.0.egg-info Skipping SOURCES.txt running install_scripts Installing augur script to /build/reproducible-path/augur-24.4.0/debian/augur/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' dh_install find debian -name LICENSE.txt -delete find debian -name '*.fasta' -delete rm -f -r debian/augur/usr/lib/python3.*/dist-packages/.mypy_cache make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/augur/usr/bin/augur dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'augur' in '../augur_24.4.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../augur_24.4.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../augur_24.4.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/478675 and its subdirectories I: Current time: Sun Sep 14 11:31:22 -12 2025 I: pbuilder-time-stamp: 1757892682 Sun Sep 14 23:31:22 UTC 2025 I: Signing ./b1/augur_24.4.0-2_amd64.buildinfo as augur_24.4.0-2_amd64.buildinfo.asc Sun Sep 14 23:31:22 UTC 2025 I: Signed ./b1/augur_24.4.0-2_amd64.buildinfo as ./b1/augur_24.4.0-2_amd64.buildinfo.asc Sun Sep 14 23:31:22 UTC 2025 - build #1 for augur/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Sun Sep 14 23:31:22 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-t9qYZUcW, removing. /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4: total 16 -rw-rw-r-- 1 jenkins jenkins 2494 Sep 13 10:07 augur_24.4.0-2.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 23:31 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 23:21 b2 -rw------- 1 jenkins jenkins 3585 Sep 14 23:21 rbuildlog.4TxK7LV /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b1: total 448 -rw-r--r-- 1 jenkins jenkins 16532 Sep 14 23:31 augur_24.4.0-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2494 Sep 14 23:31 augur_24.4.0-2.dsc -rw-r--r-- 1 jenkins jenkins 261668 Sep 14 23:31 augur_24.4.0-2_all.deb -rw-r--r-- 1 jenkins jenkins 9202 Sep 14 23:31 augur_24.4.0-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 10084 Sep 14 23:31 augur_24.4.0-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1102 Sep 14 23:31 augur_24.4.0-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 1261 Sep 14 23:31 augur_24.4.0-2_source.changes -rw-r--r-- 1 jenkins jenkins 136301 Sep 14 23:31 build.log /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b2: total 0 Sun Sep 14 23:31:23 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 11:21:03 -12 2025 I: pbuilder-time-stamp: 1757892063 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [augur_24.4.0-2.dsc] I: copying [./augur_24.4.0.orig.tar.gz] I: copying [./augur_24.4.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./augur_24.4.0-2.dsc: no acceptable signature found dpkg-source: info: extracting augur in augur-24.4.0 dpkg-source: info: unpacking augur_24.4.0.orig.tar.gz dpkg-source: info: unpacking augur_24.4.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying missing-imports.patch dpkg-source: info: applying pandas-2.2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/478675/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='295719652f4542deafaa508ea9bf4b01' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='478675' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/pbuilderrc_XiUT --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b1 --logfile b1/build.log augur_24.4.0-2.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/478675/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, mafft, python3-all, python3-setuptools, python3-pytest, python3-pytest-mock, python3-biopython, python3-jsonschema, python3-networkx, python3-packaging, python3-pandas, python3-pyfastx, python3-treetime (>= 0.9.4), python3-typeshed, python3-freezegun, python3-isodate, python3-zstandard, vcftools, python3-xopen (>= 1.7.0-1~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-packaging; however: Package python3-packaging is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pyfastx; however: Package python3-pyfastx is not installed. pbuilder-satisfydepends-dummy depends on python3-treetime (>= 0.9.4); however: Package python3-treetime is not installed. pbuilder-satisfydepends-dummy depends on python3-typeshed; however: Package python3-typeshed is not installed. pbuilder-satisfydepends-dummy depends on python3-freezegun; however: Package python3-freezegun is not installed. pbuilder-satisfydepends-dummy depends on python3-isodate; however: Package python3-isodate is not installed. pbuilder-satisfydepends-dummy depends on python3-zstandard; however: Package python3-zstandard is not installed. pbuilder-satisfydepends-dummy depends on vcftools; however: Package vcftools is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen (>= 1.7.0-1~); however: Package python3-xopen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyuv0{a} libzopfli1{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-freezegun{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-isodate{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyfaidx{a} python3-pyfastx{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-mock{a} python3-pytz{a} python3-referencing{a} python3-reportlab{a} python3-rlpycairo{a} python3-rpds-py{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-treetime{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-ufolib2{a} python3-xopen{a} python3-zipp{a} python3-zopfli{a} python3-zstandard{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} vcftools{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl libwww-perl lynx ncbi-blast+ python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-fqdn python3-gdal python3-html5lib python3-idna python3-isal python3-isoduration python3-jinja2 python3-json-pointer python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pydot python3-pygraphviz python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-tables python3-tz python3-uritemplate python3-webcolors python3-yaml ruby shared-mime-info tabix wget xdg-user-dirs 0 packages upgraded, 180 newly installed, 0 to remove and 0 not upgraded. Need to get 154 MB of archives. After unpacking 628 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 pigz amd64 2.8-1 [62.7 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 47 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.4-1 [190 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-7 [76.3 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 11.4.5-1 [505 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 mafft amd64 7.525-1 [1186 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.7-1 [108 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 11.3.0-1 [81.1 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-5 [1674 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-8 [95.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 6.0.1-1 [1434 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.4+dfsg-1 [25.4 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 unicode-data all 16.0.0-1 [9197 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.57.0-2 [1457 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-freezegun all 1.5.1-1.2 [17.2 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-isodate all 0.7.2-1 [19.5 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 158 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.21.0-2+b1 [257 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.36.2-1 [23.7 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 161 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-5 [23.8 MB] Get: 166 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get: 167 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2025.2-3 [152 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 python3-pyfaidx all 0.8.1.3-2 [29.1 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 python3-pyfastx amd64 2.2.0-1+b1 [58.1 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 python3-pytest-mock all 3.15.0-1 [18.6 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 python3-treetime all 0.11.4-1 [938 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 python3-typeshed all 0.0~git20241223.ea91db2-4 [1531 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-zstandard amd64 0.24.0-1 [351 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 vcftools amd64 0.1.17-1 [468 kB] Fetched 154 MB in 7s (21.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package pigz. Preparing to unpack .../archives/pigz_2.8-1_amd64.deb ... Unpacking pigz (2.8-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up vcftools (0.1.17-1) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libaom3:amd64 (3.12.1-1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libgpg-error0:amd64 (1.55-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up mafft (7.525-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up fonts-lyx (2.4.4-1) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libgcrypt20:amd64 (1.11.2-2) ... Setting up libqhull-r8.0:amd64 (2020.2-7) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Sep 14 23:24:09 UTC 2025. Universal Time is now: Sun Sep 14 23:24:09 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up autoconf (2.72-3.1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up libdav1d7:amd64 (1.5.1-1) ... Setting up sensible-utils (0.0.26) ... Setting up pigz (2.8-1) ... Setting up libtiff6:amd64 (4.7.0-5) ... Setting up librav1e0.7:amd64 (0.7.1-9+b2) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libxslt1.1:amd64 (1.1.43-0.2) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up python-matplotlib-data (3.10.1+dfsg1-5) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libyuv0:amd64 (0.0.1916.20250814-1) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libavif16:amd64 (1.3.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-5) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (11.4.5-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.7-1) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up python3-fs (2.4.16-8) ... Setting up python3-isodate (0.7.2-1) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-xopen (1.7.0-3) ... Setting up python3-zstandard (0.24.0-1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-typeshed (0.0~git20241223.ea91db2-4) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-rpds-py (0.21.0-2+b1) ... Setting up python3-lxml:amd64 (6.0.1-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-freezegun (1.5.1-1.2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-pyfaidx (0.8.1.3-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-attr (25.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-lz4 (4.4.4+dfsg-1) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-pyfastx (2.2.0-1+b1) ... Setting up python3-all (3.13.7-1) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-pytz (2025.2-3) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.3.0-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-pandas (2.2.3+dfsg-9) ... Setting up python3-pil.imagetk:amd64 (11.3.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.4.3-1) ... Setting up python3-pytest-mock (3.15.0-1) ... Setting up python3-referencing (0.36.2-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up python3-fonttools (4.57.0-2) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-5) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-5) ... Setting up python3-treetime (0.11.4-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/augur-24.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../augur_24.4.0-2_source.changes dpkg-buildpackage: info: source package augur dpkg-buildpackage: info: source version 24.4.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pytest_cache nextstrain_augur.egg-info make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/refine.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/mask.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/tree.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/titers.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/index.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/types.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__version__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/validate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/align.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/version.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/lbi.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/parse.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__main__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/clades.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/distance.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/utils.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/translate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/filenames.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/json.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/print.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ copying augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ copying augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' cp -v mypy.ini /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : 'mypy.ini' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' cp -v .flake8 /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : '.flake8' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not (test_mypy or test_flake8)' ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/augur-24.4.0 plugins: mock-3.15.0, typeguard-4.4.4 collected 351 items / 2 deselected / 349 selected tests/dates/test_ambiguous_date.py ............................. [ 8%] tests/dates/test_dates.py ....... [ 10%] tests/filter/test_relative_dates.py ................ [ 14%] tests/filter/test_subsample.py ................ [ 19%] tests/io/test_file.py ............. [ 23%] tests/io/test_metadata.py .......................................... [ 35%] tests/io/test_sequences.py .................... [ 40%] tests/io/test_shell_command_runner.py .......... [ 43%] tests/io/test_strains.py . [ 44%] tests/io/test_vcf.py ....... [ 46%] tests/test_align.py ............................................... [ 59%] tests/test_ancestral.py ... [ 60%] tests/test_clades.py ......... [ 63%] tests/test_frequencies.py ........................ [ 69%] tests/test_mask.py ....................................... [ 81%] tests/test_parse.py ... [ 81%] tests/test_schemas.py .......... [ 84%] tests/test_titer_models.py . [ 85%] tests/test_translate.py .. [ 85%] tests/test_utils.py .......... [ 88%] tests/test_validate.py ................... [ 93%] tests/test_validate_export.py .. [ 94%] tests/util_support/test_color_parser.py .... [ 95%] tests/util_support/test_node_data.py ... [ 96%] tests/util_support/test_node_data_file.py ...... [ 98%] tests/util_support/test_node_data_reader.py ...... [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.13/build/tests/test_validate.py: 10 warnings .pybuild/cpython3_3.13/build/tests/util_support/test_node_data_file.py: 2 warnings /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py:65: DeprecationWarning: Accessing Draft6Validator.resolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. schema_validator.resolver.resolve_remote = resolve_remote -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =============== 349 passed, 2 deselected, 12 warnings in 31.63s ================ debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini && : removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8 && : removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/augur/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/augur-24.4.0/debian/augur /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/json.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/print.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/shell_command_runner.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/vcf.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/strains.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/metadata.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/print.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/refine.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser_line.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_reader.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/concat.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/mask.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/sequence_traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/index.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequency_estimators.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titer_model.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/tree.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/argparse_.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/reconstruct_sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__version__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/ancestral.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate_export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v1.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/lbi.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titers.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/types.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/mask.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/clades.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/translate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v2.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/align.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/refine.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequencies.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/passthru.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates_directives.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/titlecase.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/normalize_strings.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/tree.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titers.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/index.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/types.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__version__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/align.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/version.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/lbi.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/beast.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/parse.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/_run.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/subsample.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/include_exclude_rules.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/ambiguous_date.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__main__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/clades.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/distance.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/utils.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/translate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filenames.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequencies.py to frequencies.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/json.py to json.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/shell_command_runner.py to shell_command_runner.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/vcf.py to vcf.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/file.py to file.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/print.py to print.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/metadata.py to metadata.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/sequences.py to sequences.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/strains.py to strains.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/refine.py to refine.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_reader.py to node_data_reader.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser.py to color_parser.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_file.py to node_data_file.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data.py to node_data.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser_line.py to color_parser_line.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/export.py to export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/concat.py to concat.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/mask.py to mask.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequency_estimators.py to frequency_estimators.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/passthru.py to passthru.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates.py to format_dates.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/titlecase.py to titlecase.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/normalize_strings.py to normalize_strings.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates_directives.py to format_dates_directives.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/tree.py to tree.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titers.py to titers.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/index.py to index.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/types.py to types.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__version__.py to __version__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/ancestral.py to ancestral.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate.py to validate.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/align.py to align.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/reconstruct_sequences.py to reconstruct_sequences.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/traits.py to traits.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export.py to export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/argparse_.py to argparse_.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate_export.py to validate_export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/lbi.py to lbi.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/beast.py to beast.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/sequence_traits.py to sequence_traits.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/parse.py to parse.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titer_model.py to titer_model.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/constants.py to constants.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/include_exclude_rules.py to include_exclude_rules.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/subsample.py to subsample.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/validate_arguments.py to validate_arguments.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/_run.py to _run.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/ambiguous_date.py to ambiguous_date.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/clades.py to clades.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/distance.py to distance.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v1.py to export_v1.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/translate.py to translate.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v2.py to export_v2.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filenames.py to filenames.cpython-313.pyc running install_egg_info running egg_info creating nextstrain_augur.egg-info writing nextstrain_augur.egg-info/PKG-INFO writing dependency_links to nextstrain_augur.egg-info/dependency_links.txt writing entry points to nextstrain_augur.egg-info/entry_points.txt writing requirements to nextstrain_augur.egg-info/requires.txt writing top-level names to nextstrain_augur.egg-info/top_level.txt writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.nextstrain-cli' adding license file 'LICENSE.txt' writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' Copying nextstrain_augur.egg-info to /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/nextstrain_augur-24.4.0.egg-info Skipping SOURCES.txt running install_scripts Installing augur script to /build/reproducible-path/augur-24.4.0/debian/augur/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' dh_install find debian -name LICENSE.txt -delete find debian -name '*.fasta' -delete rm -f -r debian/augur/usr/lib/python3.*/dist-packages/.mypy_cache make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/augur/usr/bin/augur dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'augur' in '../augur_24.4.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../augur_24.4.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../augur_24.4.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/478675 and its subdirectories I: Current time: Sun Sep 14 11:31:22 -12 2025 I: pbuilder-time-stamp: 1757892682 Sun Sep 14 23:31:23 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sun Sep 14 23:31:23 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sun Sep 14 23:31:23 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sun Sep 14 23:31:23 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-C4sHtK' ==================================================================================== Sun Oct 18 05:54:23 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 augur unstable /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4 24.4.0-2" as arguments. Sun Oct 18 05:54:23 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-TtLrsXvQ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 05:54:23 UTC 2026 I: Downloading source for unstable/augur=24.4.0-2 Reading package lists... NOTICE: 'augur' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/augur.git Please use: git clone https://salsa.debian.org/med-team/augur.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6821 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (dsc) [2494 B] Get:2 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (tar) [6802 kB] Get:3 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (diff) [16.5 kB] Fetched 6821 kB in 0s (28.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'augur' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/augur.git Please use: git clone https://salsa.debian.org/med-team/augur.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6821 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (dsc) [2494 B] Get:2 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (tar) [6802 kB] Get:3 http://deb.debian.org/debian unstable/main augur 24.4.0-2 (diff) [16.5 kB] Fetched 6821 kB in 0s (28.6 MB/s) Download complete and in download only mode ============================================================================= Re-Building augur in unstable on amd64 on ionos15-amd64 now. Date: Sun Oct 18 05:54:23 UTC 2026 Date UTC: Sun Oct 18 05:54:23 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/pbuilderrc_urRb + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' augur = debian-installer -o augur = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' augur = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/pbuilderrc_urRb --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b2 --logfile b2/build.log augur_24.4.0-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 18 19:54:23 +14 2026 I: pbuilder-time-stamp: 1792302863 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [augur_24.4.0-2.dsc] I: copying [./augur_24.4.0.orig.tar.gz] I: copying [./augur_24.4.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./augur_24.4.0-2.dsc: no acceptable signature found dpkg-source: info: extracting augur in augur-24.4.0 dpkg-source: info: unpacking augur_24.4.0.orig.tar.gz dpkg-source: info: unpacking augur_24.4.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying missing-imports.patch dpkg-source: info: applying pandas-2.2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 18 05:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=ae8988e8710c4f49a8e1756ccabd48a8 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2599668 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/pbuilderrc_urRb --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b2 --logfile b2/build.log augur_24.4.0-2.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, mafft, python3-all, python3-setuptools, python3-pytest, python3-pytest-mock, python3-biopython, python3-jsonschema, python3-networkx, python3-packaging, python3-pandas, python3-pyfastx, python3-treetime (>= 0.9.4), python3-typeshed, python3-freezegun, python3-isodate, python3-zstandard, vcftools, python3-xopen (>= 1.7.0-1~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-packaging; however: Package python3-packaging is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pyfastx; however: Package python3-pyfastx is not installed. pbuilder-satisfydepends-dummy depends on python3-treetime (>= 0.9.4); however: Package python3-treetime is not installed. pbuilder-satisfydepends-dummy depends on python3-typeshed; however: Package python3-typeshed is not installed. pbuilder-satisfydepends-dummy depends on python3-freezegun; however: Package python3-freezegun is not installed. pbuilder-satisfydepends-dummy depends on python3-isodate; however: Package python3-isodate is not installed. pbuilder-satisfydepends-dummy depends on python3-zstandard; however: Package python3-zstandard is not installed. pbuilder-satisfydepends-dummy depends on vcftools; however: Package vcftools is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen (>= 1.7.0-1~); however: Package python3-xopen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyuv0{a} libzopfli1{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-freezegun{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-isodate{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyfaidx{a} python3-pyfastx{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-mock{a} python3-pytz{a} python3-referencing{a} python3-reportlab{a} python3-rlpycairo{a} python3-rpds-py{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-treetime{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-ufolib2{a} python3-xopen{a} python3-zipp{a} python3-zopfli{a} python3-zstandard{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} vcftools{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl libwww-perl lynx ncbi-blast+ python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-fqdn python3-gdal python3-html5lib python3-idna python3-isal python3-isoduration python3-jinja2 python3-json-pointer python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pydot python3-pygraphviz python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-tables python3-tz python3-uritemplate python3-webcolors python3-yaml ruby shared-mime-info tabix wget xdg-user-dirs 0 packages upgraded, 180 newly installed, 0 to remove and 0 not upgraded. Need to get 154 MB of archives. After unpacking 628 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 pigz amd64 2.8-1 [62.7 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 47 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.4-1 [190 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-7 [76.3 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 11.4.5-1 [505 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 mafft amd64 7.525-1 [1186 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.7-1 [108 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 11.3.0-1 [81.1 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-5 [1674 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-8 [95.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 6.0.1-1 [1434 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.4+dfsg-1 [25.4 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 unicode-data all 16.0.0-1 [9197 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.57.0-2 [1457 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-freezegun all 1.5.1-1.2 [17.2 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-isodate all 0.7.2-1 [19.5 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 158 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.21.0-2+b1 [257 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.36.2-1 [23.7 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 161 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-5 [23.8 MB] Get: 166 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get: 167 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2025.2-3 [152 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 python3-pyfaidx all 0.8.1.3-2 [29.1 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 python3-pyfastx amd64 2.2.0-1+b1 [58.1 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 python3-pytest-mock all 3.15.0-1 [18.6 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 python3-treetime all 0.11.4-1 [938 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 python3-typeshed all 0.0~git20241223.ea91db2-4 [1531 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-zstandard amd64 0.24.0-1 [351 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 vcftools amd64 0.1.17-1 [468 kB] Fetched 154 MB in 12s (13.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package pigz. Preparing to unpack .../archives/pigz_2.8-1_amd64.deb ... Unpacking pigz (2.8-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20260 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21275 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-7_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_15.2.0-4_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-7_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1.2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... 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Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.4.3-1) ... Setting up python3-pytest-mock (3.15.0-1) ... Setting up python3-referencing (0.36.2-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up python3-fonttools (4.57.0-2) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-5) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-5) ... Setting up python3-treetime (0.11.4-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/augur-24.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../augur_24.4.0-2_source.changes dpkg-buildpackage: info: source package augur dpkg-buildpackage: info: source version 24.4.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pytest_cache nextstrain_augur.egg-info make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/clades.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/version.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/index.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__main__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/lbi.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/utils.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/titers.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/align.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/parse.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/filenames.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/tree.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/validate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/distance.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/refine.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__version__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/mask.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/translate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/types.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/json.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/print.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ copying augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ copying augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ copying augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' cp -v mypy.ini /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : 'mypy.ini' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' cp -v .flake8 /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : '.flake8' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not (test_mypy or test_flake8)' ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/augur-24.4.0 plugins: mock-3.15.0, typeguard-4.4.4 collected 351 items / 2 deselected / 349 selected tests/dates/test_ambiguous_date.py ............................. [ 8%] tests/dates/test_dates.py ....... [ 10%] tests/filter/test_relative_dates.py ................ [ 14%] tests/filter/test_subsample.py ................ [ 19%] tests/io/test_file.py ............. [ 23%] tests/io/test_metadata.py .......................................... [ 35%] tests/io/test_sequences.py .................... [ 40%] tests/io/test_shell_command_runner.py .......... [ 43%] tests/io/test_strains.py . [ 44%] tests/io/test_vcf.py ....... [ 46%] tests/test_align.py ............................................... [ 59%] tests/test_ancestral.py ... [ 60%] tests/test_clades.py ......... [ 63%] tests/test_frequencies.py ........................ [ 69%] tests/test_mask.py ....................................... [ 81%] tests/test_parse.py ... [ 81%] tests/test_schemas.py .......... [ 84%] tests/test_titer_models.py . [ 85%] tests/test_translate.py .. [ 85%] tests/test_utils.py .......... [ 88%] tests/test_validate.py ................... [ 93%] tests/test_validate_export.py .. [ 94%] tests/util_support/test_color_parser.py .... [ 95%] tests/util_support/test_node_data.py ... [ 96%] tests/util_support/test_node_data_file.py ...... [ 98%] tests/util_support/test_node_data_reader.py ...... [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.13/build/tests/test_validate.py: 10 warnings .pybuild/cpython3_3.13/build/tests/util_support/test_node_data_file.py: 2 warnings /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py:65: DeprecationWarning: Accessing Draft6Validator.resolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. schema_validator.resolver.resolve_remote = resolve_remote -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 349 passed, 2 deselected, 12 warnings in 8.83s ================ debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini && : removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8 && : removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/augur/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/augur-24.4.0/debian/augur /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/passthru.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/titlecase.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/normalize_strings.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates_directives.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/clades.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/version.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/index.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser_line.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_reader.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__main__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/lbi.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/reconstruct_sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__version__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequency_estimators.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/ancestral.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate_export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/refine.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/lbi.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/mask.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequencies.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/align.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titers.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/tree.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/types.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/index.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/sequence_traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v1.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/clades.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v2.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titer_model.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/translate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/argparse_.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/utils.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titers.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/align.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/parse.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filenames.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/shell_command_runner.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/strains.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/print.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/vcf.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/metadata.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/json.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/print.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/ambiguous_date.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/concat.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/tree.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/distance.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/refine.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__version__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/mask.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/translate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/subsample.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/_run.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/include_exclude_rules.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/types.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/beast.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/traits.py to traits.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/normalize_strings.py to normalize_strings.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates.py to format_dates.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/passthru.py to passthru.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates_directives.py to format_dates_directives.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/titlecase.py to titlecase.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/clades.py to clades.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/index.py to index.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/argparse_.py to argparse_.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser_line.py to color_parser_line.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser.py to color_parser.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_reader.py to node_data_reader.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_file.py to node_data_file.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data.py to node_data.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/lbi.py to lbi.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/ancestral.py to ancestral.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titers.py to titers.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/sequence_traits.py to sequence_traits.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/align.py to align.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/parse.py to parse.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v1.py to export_v1.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filenames.py to filenames.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/shell_command_runner.py to shell_command_runner.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/vcf.py to vcf.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/strains.py to strains.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/json.py to json.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/file.py to file.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/sequences.py to sequences.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/print.py to print.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/metadata.py to metadata.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate_export.py to validate_export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export.py to export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/ambiguous_date.py to ambiguous_date.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/concat.py to concat.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/export.py to export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/reconstruct_sequences.py to reconstruct_sequences.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/tree.py to tree.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate.py to validate.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/distance.py to distance.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequencies.py to frequencies.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/refine.py to refine.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__version__.py to __version__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequency_estimators.py to frequency_estimators.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/mask.py to mask.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v2.py to export_v2.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/translate.py to translate.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/_run.py to _run.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/subsample.py to subsample.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/validate_arguments.py to validate_arguments.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/constants.py to constants.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/include_exclude_rules.py to include_exclude_rules.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titer_model.py to titer_model.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/types.py to types.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/beast.py to beast.cpython-313.pyc running install_egg_info running egg_info creating nextstrain_augur.egg-info writing nextstrain_augur.egg-info/PKG-INFO writing dependency_links to nextstrain_augur.egg-info/dependency_links.txt writing entry points to nextstrain_augur.egg-info/entry_points.txt writing requirements to nextstrain_augur.egg-info/requires.txt writing top-level names to nextstrain_augur.egg-info/top_level.txt writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.nextstrain-cli' adding license file 'LICENSE.txt' writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' Copying nextstrain_augur.egg-info to /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/nextstrain_augur-24.4.0.egg-info Skipping SOURCES.txt running install_scripts Installing augur script to /build/reproducible-path/augur-24.4.0/debian/augur/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' dh_install find debian -name LICENSE.txt -delete find debian -name '*.fasta' -delete rm -f -r debian/augur/usr/lib/python3.*/dist-packages/.mypy_cache make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/augur/usr/bin/augur dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'augur' in '../augur_24.4.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../augur_24.4.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../augur_24.4.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2599668 and its subdirectories I: Current time: Sun Oct 18 20:01:05 +14 2026 I: pbuilder-time-stamp: 1792303265 + false + set +x Sun Oct 18 06:01:05 UTC 2026 I: Signing ./b2/augur_24.4.0-2_amd64.buildinfo as augur_24.4.0-2_amd64.buildinfo.asc Sun Oct 18 06:01:05 UTC 2026 I: Signed ./b2/augur_24.4.0-2_amd64.buildinfo as ./b2/augur_24.4.0-2_amd64.buildinfo.asc Sun Oct 18 06:01:05 UTC 2026 - build #2 for augur/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Sun Oct 18 06:01:05 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-TtLrsXvQ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4: total 156 -rw-rw-r-- 1 jenkins jenkins 2494 Sep 13 10:07 augur_24.4.0-2.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 23:31 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 23:38 b2 -rw------- 1 jenkins jenkins 140174 Sep 14 23:31 rbuildlog.4TxK7LV /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b1: total 456 -rw-r--r-- 1 jenkins jenkins 16532 Sep 14 23:31 augur_24.4.0-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2494 Sep 14 23:31 augur_24.4.0-2.dsc -rw-r--r-- 1 jenkins jenkins 261668 Sep 14 23:31 augur_24.4.0-2_all.deb -rw-r--r-- 1 jenkins jenkins 9202 Sep 14 23:31 augur_24.4.0-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 10084 Sep 14 23:31 augur_24.4.0-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1102 Sep 14 23:31 augur_24.4.0-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 1261 Sep 14 23:31 augur_24.4.0-2_source.changes -rw-r--r-- 1 jenkins jenkins 136301 Sep 14 23:31 build.log /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b2: total 448 -rw-r--r-- 1 jenkins jenkins 16532 Sep 14 23:38 augur_24.4.0-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2494 Sep 14 23:38 augur_24.4.0-2.dsc -rw-r--r-- 1 jenkins jenkins 261668 Sep 14 23:38 augur_24.4.0-2_all.deb -rw-rw-r-- 1 jenkins jenkins 9202 Sep 14 23:38 augur_24.4.0-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 10084 Sep 14 23:38 augur_24.4.0-2_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1102 Sep 14 23:38 augur_24.4.0-2_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1261 Sep 14 23:38 augur_24.4.0-2_source.changes -rw-rw-r-- 1 jenkins jenkins 138237 Sep 14 23:38 build.log Sun Sep 14 23:38:06 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sun Sep 14 23:38:07 UTC 2025 I: augur_24.4.0-2_amd64.changes: Format: 1.8 Date: Sat, 13 Sep 2025 12:06:20 +0200 Source: augur Binary: augur Architecture: all Version: 24.4.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: augur - pipeline components for real-time virus analysis Changes: augur (24.4.0-2) unstable; urgency=medium . * Team upload. * Switch to pybuild-autopkgtest, skip mypy & flake8 tests as they are for upstream developers only. Checksums-Sha1: 329a1f1194e01d61b61c6742b596a873b9f3ff19 261668 augur_24.4.0-2_all.deb a862ea690e85c379e348f3b38e4013e25f87233e 9202 augur_24.4.0-2_amd64.buildinfo Checksums-Sha256: 62fbda2801a33589a6c94bb01db3c27446abd72f6d4bbb0fca9acf2bb7c08844 261668 augur_24.4.0-2_all.deb af77467e8f46597a138cafcbea5c0eff4665f594bf04defc449e648fa3ea842c 9202 augur_24.4.0-2_amd64.buildinfo Files: d9bf74262ab25b0566536fc32f667b3b 261668 science optional augur_24.4.0-2_all.deb 0e1070100f08ce369608fda875188d3a 9202 science optional augur_24.4.0-2_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/augur_24.4.0-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/augur_24.4.0-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/augur_24.4.0-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/augur_24.4.0-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/augur_24.4.0-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/augur_24.4.0-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/augur_24.4.0-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/augur_24.4.0-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-14 23:31:23.138856682 +0000 +++ b2/build.log 2025-09-14 23:38:06.903354876 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 14 11:21:03 -12 2025 -I: pbuilder-time-stamp: 1757892063 +I: Current time: Sun Oct 18 19:54:23 +14 2026 +I: pbuilder-time-stamp: 1792302863 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying pandas-2.2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/478675/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 18 05:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='295719652f4542deafaa508ea9bf4b01' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='478675' - PS1='# ' - PS2='> ' + INVOCATION_ID=ae8988e8710c4f49a8e1756ccabd48a8 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2599668 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/pbuilderrc_XiUT --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b1 --logfile b1/build.log augur_24.4.0-2.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/pbuilderrc_urRb --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b2 --logfile b2/build.log augur_24.4.0-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/478675/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -325,7 +357,7 @@ Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-zstandard amd64 0.24.0-1 [351 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 vcftools amd64 0.1.17-1 [468 kB] -Fetched 154 MB in 7s (21.0 MB/s) +Fetched 154 MB in 12s (13.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -917,8 +949,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Sep 14 23:24:09 UTC 2025. -Universal Time is now: Sun Sep 14 23:24:09 UTC 2025. +Local time is now: Sun Oct 18 05:56:23 UTC 2026. +Universal Time is now: Sun Oct 18 05:56:23 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... @@ -1078,7 +1110,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/augur-24.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../augur_24.4.0-2_source.changes +I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/augur-24.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../augur_24.4.0-2_source.changes dpkg-buildpackage: info: source package augur dpkg-buildpackage: info: source version 24.4.0-2 dpkg-buildpackage: info: source distribution unstable @@ -1150,95 +1186,95 @@ running build running build_py creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/refine.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/mask.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/tree.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/titers.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/index.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/types.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/__version__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/validate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/align.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/clades.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/version.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/index.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/__main__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/lbi.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/utils.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/titers.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/align.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/parse.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/__main__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/clades.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/distance.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/utils.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/translate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur -copying augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/filenames.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/tree.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/validate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/distance.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/refine.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/__version__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/mask.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/translate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +copying augur/types.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur +creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate +copying augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate +copying augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate +copying augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate +copying augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate +copying augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate +copying augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate +creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support +copying augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support +copying augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support +copying augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support +copying augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support +copying augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support +copying augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support +creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data +copying augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io -copying augur/io/json.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io -copying augur/io/file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io +copying augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io +copying augur/io/json.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io +copying augur/io/file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io +copying augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/print.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io -copying augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io -copying augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io -creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support -copying augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support -copying augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support -copying augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support -copying augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support -copying augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support -copying augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support +creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates +copying augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates +copying augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates +copying augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements -copying augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements -copying augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements -creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate -copying augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate -copying augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate -copying augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate -copying augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate -copying augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate -copying augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate -creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ -copying augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ -copying augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ +copying augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements +copying augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter -copying augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter -copying augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter -copying augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter +copying augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter +copying augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter -copying augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter -copying augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter -creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates -copying augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates -copying augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates -copying augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates -creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data -copying augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data -copying augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data -copying augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data -copying augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data +copying augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter +copying augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter +copying augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter +creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ +copying augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ +copying augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ +copying augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data -copying augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data -copying augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data -copying augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data -copying augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data +copying augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data -copying augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data +copying augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data +copying augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data +copying augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data +copying augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data +copying augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data +copying augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' cp -v mypy.ini /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : @@ -1288,7 +1324,7 @@ schema_validator.resolver.resolve_remote = resolve_remote -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -=============== 349 passed, 2 deselected, 12 warnings in 31.63s ================ +================ 349 passed, 2 deselected, 12 warnings in 8.83s ================ debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini && : @@ -1333,239 +1369,239 @@ running install_lib creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/json.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/print.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/shell_command_runner.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/vcf.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/strains.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/metadata.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/print.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/refine.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/passthru.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/titlecase.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/normalize_strings.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates_directives.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/clades.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/version.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/index.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser_line.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_reader.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/concat.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/mask.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__main__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/lbi.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/sequence_traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/index.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequency_estimators.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titer_model.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/tree.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/argparse_.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/reconstruct_sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__version__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequency_estimators.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/ancestral.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate_export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v1.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/lbi.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/refine.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/lbi.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/mask.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequencies.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/align.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titers.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/tree.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/types.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/mask.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/index.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/sequence_traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v1.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/clades.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/translate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v2.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/align.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/refine.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequencies.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titer_model.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/passthru.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates_directives.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/titlecase.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/normalize_strings.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/tree.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/translate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/argparse_.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/utils.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titers.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/index.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/types.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__version__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/align.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/parse.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filenames.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/shell_command_runner.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/strains.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/print.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/vcf.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/metadata.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/json.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/print.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/ambiguous_date.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/concat.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/version.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/lbi.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/beast.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/parse.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/tree.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/distance.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/refine.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__version__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/mask.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/translate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/_run.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/subsample.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/_run.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/include_exclude_rules.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/ambiguous_date.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__main__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/clades.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/distance.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/utils.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/translate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filenames.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequencies.py to frequencies.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/json.py to json.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/shell_command_runner.py to shell_command_runner.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/vcf.py to vcf.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/file.py to file.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/print.py to print.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/metadata.py to metadata.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/sequences.py to sequences.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/strains.py to strains.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/refine.py to refine.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_reader.py to node_data_reader.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser.py to color_parser.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_file.py to node_data_file.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data.py to node_data.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser_line.py to color_parser_line.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/export.py to export.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/concat.py to concat.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/mask.py to mask.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequency_estimators.py to frequency_estimators.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/passthru.py to passthru.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates.py to format_dates.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/titlecase.py to titlecase.cpython-313.pyc +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/types.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ +creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/beast.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ +copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/traits.py to traits.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/normalize_strings.py to normalize_strings.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates.py to format_dates.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/passthru.py to passthru.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates_directives.py to format_dates_directives.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/tree.py to tree.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titers.py to titers.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/index.py to index.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/types.py to types.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__version__.py to __version__.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/ancestral.py to ancestral.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate.py to validate.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/align.py to align.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/errors.py to errors.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/reconstruct_sequences.py to reconstruct_sequences.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/traits.py to traits.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/titlecase.py to titlecase.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/clades.py to clades.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/version.py to version.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export.py to export.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/index.py to index.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/argparse_.py to argparse_.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate_export.py to validate_export.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser_line.py to color_parser_line.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser.py to color_parser.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_reader.py to node_data_reader.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_file.py to node_data_file.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data.py to node_data.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/lbi.py to lbi.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/beast.py to beast.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/ancestral.py to ancestral.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/utils.py to utils.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titers.py to titers.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/sequence_traits.py to sequence_traits.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/align.py to align.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/parse.py to parse.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titer_model.py to titer_model.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/constants.py to constants.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/include_exclude_rules.py to include_exclude_rules.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/subsample.py to subsample.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/validate_arguments.py to validate_arguments.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/_run.py to _run.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/io.py to io.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v1.py to export_v1.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filenames.py to filenames.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/shell_command_runner.py to shell_command_runner.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/vcf.py to vcf.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/strains.py to strains.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/json.py to json.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/file.py to file.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/sequences.py to sequences.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/print.py to print.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/metadata.py to metadata.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate_export.py to validate_export.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/errors.py to errors.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export.py to export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/errors.py to errors.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/ambiguous_date.py to ambiguous_date.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__main__.py to __main__.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/clades.py to clades.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/concat.py to concat.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/export.py to export.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/reconstruct_sequences.py to reconstruct_sequences.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/tree.py to tree.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate.py to validate.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/distance.py to distance.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/utils.py to utils.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v1.py to export_v1.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/translate.py to translate.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequencies.py to frequencies.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/refine.py to refine.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__version__.py to __version__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequency_estimators.py to frequency_estimators.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/mask.py to mask.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v2.py to export_v2.cpython-313.pyc -byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filenames.py to filenames.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/translate.py to translate.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/io.py to io.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/_run.py to _run.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/subsample.py to subsample.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/validate_arguments.py to validate_arguments.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/constants.py to constants.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/include_exclude_rules.py to include_exclude_rules.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titer_model.py to titer_model.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/types.py to types.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/beast.py to beast.cpython-313.pyc running install_egg_info running egg_info creating nextstrain_augur.egg-info @@ -1615,12 +1651,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2599668/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/478675 and its subdirectories -I: Current time: Sun Sep 14 11:31:22 -12 2025 -I: pbuilder-time-stamp: 1757892682 +I: removing directory /srv/workspace/pbuilder/2599668 and its subdirectories +I: Current time: Sun Oct 18 20:01:05 +14 2026 +I: pbuilder-time-stamp: 1792303265 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/augur_24.4.0-2.diff: 93.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/augur_24.4.0-2.diff.gz b2/build.log: 86.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 87.2% -- replaced with stdout Sun Sep 14 23:38:07 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_augur_unstable_amd64_1757893087 + touch /var/log/reproducible-builds/diffoscope_stamp_augur_unstable_amd64_1757893087 + RESULT=0 + systemd-run '--description=diffoscope on augur/24.4.0-2 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_29-54678 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4 --run-session -c jenkins-reproducible-unstable-diffoscope-8184ce45-8ea5-4f12-b4a1-f98adf04b8b6 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/dbd-tmp-64O9Vhn ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/augur_24.4.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/augur_24.4.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/augur_24.4.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b1/augur_24.4.0-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b2/augur_24.4.0-2_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_29-54678.service; invocation ID: fc56bbb8e7c04ff4b07f6fc9b24213db # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/augur_24.4.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/augur_24.4.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/augur_24.4.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b1/augur_24.4.0-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3qpALPu4/b2/augur_24.4.0-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 210ms CPU time consumed: 172ms Memory peak: 17.5M (swap: 0B) __ _ _ _ __ _ _ _ _ __ / _` | | | |/ _` | | | | '__| | (_| | |_| | (_| | |_| | | \__,_|\__,_|\__, |\__,_|_| |___/ Sun Sep 14 23:38:08 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sun Sep 14 23:38:08 UTC 2025 I: augur from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-14 23:38:08] INFO: Starting at 2025-09-14 23:38:08.678229 [2025-09-14 23:38:08] INFO: Generating the pages of 1 package(s) [2025-09-14 23:38:08] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/augur didn't produce a buildlog, even though it has been built. [2025-09-14 23:38:08] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/augur didn't produce a buildlog, even though it has been built. [2025-09-14 23:38:08] INFO: Finished at 2025-09-14 23:38:08.979306, took: 0:00:00.301081 Sun Sep 14 23:38:09 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/augur.html Sun Sep 14 23:38:09 UTC 2025 I: Removing signed augur_24.4.0-2_amd64.buildinfo.asc files: removed './b1/augur_24.4.0-2_amd64.buildinfo.asc' removed './b2/augur_24.4.0-2_amd64.buildinfo.asc' 1757893089 amd64 unstable augur Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/augur_24.4.0-2.rbuild.log: 85.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/augur_24.4.0-2.rbuild.log.gz [2025-09-14 23:38:09] INFO: Starting at 2025-09-14 23:38:09.307536 [2025-09-14 23:38:09] INFO: Generating the pages of 1 package(s) [2025-09-14 23:38:09] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/augur didn't produce a buildlog, even though it has been built. [2025-09-14 23:38:09] INFO: Finished at 2025-09-14 23:38:09.569741, took: 0:00:00.262207 All cleanup done. Sun Sep 14 23:38:09 UTC 2025 - total duration: 0h 17m 22s. Sun Sep 14 23:38:09 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hTeCny7G, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 17min 23.143s CPU time consumed: 3.293s Memory peak: 41.4M (swap: 0B)