Running as unit: rb-build-amd64_29-54740.service; invocation ID: b0a2ca53191d4e50809f9408803049d2 ==================================================================================== Mon Sep 15 08:38:43 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_29) on jenkins, called using "ionos1-amd64 ionos15-amd64" as arguments. Mon Sep 15 08:38:43 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-asoJhJmA" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 08:38:43 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Mon Sep 15 08:38:43 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-jlG5WH' Mon Sep 15 08:38:43 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Mon Sep 15 08:38:43 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Z2Z61L' ok, let's check if staden is building anywhere yet… ok, staden is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of staden in forky on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Mon Sep 15 08:38:53 UTC 2025 I: starting to build staden/forky/amd64 on jenkins on '2025-09-15 08:38' Mon Sep 15 08:38:53 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/54740/console.log 1757925533 amd64 forky staden Mon Sep 15 08:38:53 UTC 2025 I: Downloading source for forky/staden=2.0.0+b11-5 --2025-09-15 08:38:53-- http://deb.debian.org/debian/pool/main/s/staden/staden_2.0.0%2bb11-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2185 (2.1K) [text/prs.lines.tag] Saving to: ‘staden_2.0.0+b11-5.dsc’ 0K .. 100% 233M=0s 2025-09-15 08:38:53 (233 MB/s) - ‘staden_2.0.0+b11-5.dsc’ saved [2185/2185] --2025-09-15 08:38:53-- http://deb.debian.org/debian/pool/main/s/staden/staden_2.0.0%2bb11-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2185 (2.1K) [text/prs.lines.tag] Saving to: ‘staden_2.0.0+b11-5.dsc’ 0K .. 100% 233M=0s 2025-09-15 08:38:53 (233 MB/s) - ‘staden_2.0.0+b11-5.dsc’ saved [2185/2185] Mon Sep 15 08:38:53 UTC 2025 I: staden_2.0.0+b11-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: staden Binary: staden, staden-common Architecture: any all Version: 2.0.0+b11-5 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://sourceforge.net/projects/staden/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/staden Vcs-Git: https://salsa.debian.org/med-team/staden.git Build-Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev Package-List: staden deb science optional arch=any staden-common deb science optional arch=all Checksums-Sha1: a51f0a004961511734a05fd54d8b2b1b0cfd6e32 4754651 staden_2.0.0+b11.orig.tar.gz a770dce5dc8fb2dad9e1e8a8a85ec4be8ef3b8ac 16800 staden_2.0.0+b11-5.debian.tar.xz Checksums-Sha256: cd7ee17626c25bc845ebd3f6311b5a538815fb73a0dfef2393001bf579ac9649 4754651 staden_2.0.0+b11.orig.tar.gz 34008f109d1a4c97659213035fe72c0059d9e4caa80b65d6e972e0055fc32ecf 16800 staden_2.0.0+b11-5.debian.tar.xz Files: ae59565ded12242c4c2728fbf2e185a7 4754651 staden_2.0.0+b11.orig.tar.gz 532a8c853e97a38ddbc4e95e93525f66 16800 staden_2.0.0+b11-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmXxuwcACgkQPCZ2P2xn 5uI/qw//dVWXAscRvuRAcyK8UpglQNEVAJLZJg7DO+832OyOfd84naHsh610D6yP xNL4dOhyV6K+2fm62wF72Hx9AY/vyXRMaiEirnxm4NskiNkXU5lN51hPnyMeEAz+ yTR4K65U7Dw7TchgIZ2YZ5DSk6k2Yxcr3hCSOBmvr9RRm3YuWVMelCo1uuPyTlCj S4NZ2wY+afWXvp4vDb0KUed8BeuX1XEomACWUJpXG8W6d5ZULPXN9ShRCuuDczoL aQ3IQC+TeKSU03x6jnJEyyEpRcUBv7F/+rauAQ+TGZGKqcc5746UkHhQQQaGi4aa QTU9z66CoQ/EQysdx+oMXJYgiepwIdjRhmINeOD25c62oAMktmRzgQZs3O+YYuEo ao/HxNR3/o1DACvXbM47Qhe7OSsz/hlBFIiiuLQm9/3Kz6NXnxbN/dKbBA1MZawZ Cijb6yOPJu4b0UqTv8khNnCK2EEM0pztLM61ntOhgS1VJfi2xzMDPAMJ/Vie7QRV snwTGa+vGINPhVMsCwXPzUeXz4/Dj52j3JV5Ty8dP65tuF/Po9OjTRkMDklFyGcz a0Gw/jsCAwqPVwvpli1b4jwGe0NqROF7SmLY+35+FBc3glZC2TShD6QzfYiXgNWY zFtUxsljJhcCD1htF4+6TIO2D8v7fijtaFRPlXkCbI3Wl9zBpNg= =Q0m3 -----END PGP SIGNATURE----- Mon Sep 15 08:38:53 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 08:38:53 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Mon Sep 15 08:38:53 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Mon Sep 15 08:38:53 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Mon Sep 15 08:38:53 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-xOm9xx' ==================================================================================== Mon Sep 15 08:38:54 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 staden forky /srv/reproducible-results/rbuild-debian/r-b-build.pbJy5wr1 2.0.0+b11-5" as arguments. Mon Sep 15 08:38:54 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-FOYz7TtG" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 08:38:54 UTC 2025 I: Downloading source for forky/staden=2.0.0+b11-5 Reading package lists... NOTICE: 'staden' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/staden.git Please use: git clone https://salsa.debian.org/med-team/staden.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4774 kB of source archives. Get:1 http://deb.debian.org/debian forky/main staden 2.0.0+b11-5 (dsc) [2185 B] Get:2 http://deb.debian.org/debian forky/main staden 2.0.0+b11-5 (tar) [4755 kB] Get:3 http://deb.debian.org/debian forky/main staden 2.0.0+b11-5 (diff) [16.8 kB] Fetched 4774 kB in 0s (78.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'staden' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/staden.git Please use: git clone https://salsa.debian.org/med-team/staden.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4774 kB of source archives. Get:1 http://deb.debian.org/debian forky/main staden 2.0.0+b11-5 (dsc) [2185 B] Get:2 http://deb.debian.org/debian forky/main staden 2.0.0+b11-5 (tar) [4755 kB] Get:3 http://deb.debian.org/debian forky/main staden 2.0.0+b11-5 (diff) [16.8 kB] Fetched 4774 kB in 0s (78.7 MB/s) Download complete and in download only mode ============================================================================= Building staden in forky on amd64 on ionos1-amd64 now. Date: Mon Sep 15 08:38:54 UTC 2025 Date UTC: Mon Sep 15 08:38:54 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 20:38:54 -12 2025 I: pbuilder-time-stamp: 1757925534 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [staden_2.0.0+b11-5.dsc] I: copying [./staden_2.0.0+b11.orig.tar.gz] I: copying [./staden_2.0.0+b11-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./staden_2.0.0+b11-5.dsc: no acceptable signature found dpkg-source: info: extracting staden in staden-2.0.0+b11 dpkg-source: info: unpacking staden_2.0.0+b11.orig.tar.gz dpkg-source: info: unpacking staden_2.0.0+b11-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_help_menus_work.patch dpkg-source: info: applying fix_tcl_path.patch dpkg-source: info: applying fix_awk.patch dpkg-source: info: applying enable_setting_stadenroot.patch dpkg-source: info: applying include_xalloc.patch dpkg-source: info: applying use_mkstemp_instead_of_tmpnam.patch dpkg-source: info: applying fix_implicit_declaration.patch dpkg-source: info: applying autoconfig.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2507905/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ecefd6ca4ee64283bfe797f2ac7a02f8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2507905' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pbJy5wr1/pbuilderrc_KAk1 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pbJy5wr1/b1 --logfile b1/build.log staden_2.0.0+b11-5.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2507905/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libstaden-read-dev; however: Package libstaden-read-dev is not installed. pbuilder-satisfydepends-dummy depends on itcl3-dev; however: Package itcl3-dev is not installed. pbuilder-satisfydepends-dummy depends on itk3-dev; however: Package itk3-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on tcl-dev; however: Package tcl-dev is not installed. pbuilder-satisfydepends-dummy depends on tk-dev; however: Package tk-dev is not installed. pbuilder-satisfydepends-dummy depends on tklib; however: Package tklib is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libncurses-dev; however: Package libncurses-dev is not installed. pbuilder-satisfydepends-dummy depends on iwidgets4; however: Package iwidgets4 is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev; however: Package libcurl4-gnutls-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} itcl3{a} itcl3-dev{a} itk3{a} itk3-dev{a} iwidgets4{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfontconfig1-dev{a} libfreetype-dev{a} libfreetype6{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhtscodecs-dev{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstaden-read-dev{a} libstaden-read14t64{a} libtasn1-6{a} libtasn1-6-dev{a} libtcl8.6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxft-dev{a} libxft2{a} libxml2-16{a} libxrender-dev{a} libxrender1{a} libxss-dev{a} libxss1{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} tcl{a} tcl-dev{a} tcl8.6{a} tcl8.6-dev{a} tk{a} tk-dev{a} tk8.6{a} tk8.6-dev{a} tklib{a} tzdata{a} uuid-dev{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libpng-tools libsasl2-modules libtasn1-doc lynx publicsuffix tcllib wget 0 packages upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 47.5 MB of archives. After unpacking 162 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 26 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 itcl3 amd64 3.4.4-3 [48.2 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 tcl8.6 amd64 8.6.17+dfsg-1 [121 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 tcl8.6-dev amd64 8.6.17+dfsg-1 [1029 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 tcl amd64 8.6.16 [4096 B] Get: 43 http://deb.debian.org/debian forky/main amd64 tcl-dev amd64 8.6.16 [6636 B] Get: 44 http://deb.debian.org/debian forky/main amd64 itcl3-dev amd64 3.4.4-3 [15.5 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 itk3 amd64 3.4.2-5 [26.4 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 x11proto-core-dev all 2024.1-1 [3312 B] Get: 64 http://deb.debian.org/debian forky/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libxext-dev amd64 2:1.3.4-1+b3 [104 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libxss-dev amd64 1:1.2.3-1+b3 [22.7 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libpng-dev amd64 1.6.50-1 [366 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libfreetype-dev amd64 2.13.3+dfsg-1 [622 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 uuid-dev amd64 2.41.1-2 [49.0 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libfontconfig-dev amd64 2.15.0-2.4 [426 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libfontconfig1-dev amd64 2.15.0-2.4 [269 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libxrender-dev amd64 1:0.9.12-1 [39.0 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libxft-dev amd64 2.3.6-1+b4 [73.2 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 tk8.6 amd64 8.6.17-1 [69.7 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 tk8.6-dev amd64 8.6.17-1 [792 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 tk amd64 8.6.16 [4136 B] Get: 87 http://deb.debian.org/debian forky/main amd64 tk-dev amd64 8.6.16 [3968 B] Get: 88 http://deb.debian.org/debian forky/main amd64 itk3-dev amd64 3.4.2-5 [5532 B] Get: 89 http://deb.debian.org/debian forky/main amd64 iwidgets4 all 4.1.1-4 [194 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 93 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.15.0-1 [385 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.23.1-1 [606 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.11.0-1 [34.0 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.11.0-1 [179 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls-dev amd64 8.15.0-1 [504 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 libhtscodecs-dev amd64 1.6.1-2 [3000 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 libstaden-read14t64 amd64 1.15.0-1.1+b2 [268 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 libstaden-read-dev amd64 1.15.0-1.1+b2 [347 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 tklib all 0.9-1 [1749 kB] Fetched 47.5 MB in 1s (36.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../004-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../007-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.41.1-2_amd64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../010-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../017-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../018-comerr-dev_2.1-1.47.2-3+b3_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../020-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../025-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../027-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../028-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... 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Selecting previously unselected package libstaden-read14t64:amd64. Preparing to unpack .../143-libstaden-read14t64_1.15.0-1.1+b2_amd64.deb ... Unpacking libstaden-read14t64:amd64 (1.15.0-1.1+b2) ... Selecting previously unselected package libstaden-read-dev. Preparing to unpack .../144-libstaden-read-dev_1.15.0-1.1+b2_amd64.deb ... Unpacking libstaden-read-dev (1.15.0-1.1+b2) ... Selecting previously unselected package tklib. Preparing to unpack .../145-tklib_0.9-1_all.deb ... Unpacking tklib (0.9-1) ... Setting up libhtscodecs2:amd64 (1.6.1-2) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 15 08:39:49 UTC 2025. Universal Time is now: Mon Sep 15 08:39:49 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libhtscodecs-dev:amd64 (1.6.1-2) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20240727.1) ... Setting up libunbound8:amd64 (1.23.1-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up libx11-data (2:1.8.12-1) ... Setting up uuid-dev:amd64 (2.41.1-2) ... Setting up libncurses6:amd64 (6.5+20250216-2) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:amd64 (3.5.2-1) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libnghttp3-dev:amd64 (1.8.0-1) ... Setting up liblzma-dev:amd64 (5.8.1-1.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... 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Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up tcl (8.6.16) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up itcl3-dev:amd64 (3.4.4-3) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.12-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libfreetype-dev:amd64 (2.13.3+dfsg-1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up itk3:amd64 (3.4.2-5) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up iwidgets4 (4.1.1-4) ... Setting up tcl-dev:amd64 (8.6.16) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b3) ... Setting up libxrender-dev:amd64 (1:0.9.12-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up tk8.6 (8.6.17-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libfontconfig-dev:amd64 (2.15.0-2.4) ... Setting up libcurl3t64-gnutls:amd64 (8.15.0-1) ... Setting up debhelper (13.26) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.11.0-1) ... Setting up libxss-dev:amd64 (1:1.2.3-1+b3) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up tk (8.6.16) ... Setting up libxft-dev:amd64 (2.3.6-1+b4) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libfontconfig1-dev:amd64 (2.15.0-2.4) ... Setting up libstaden-read14t64:amd64 (1.15.0-1.1+b2) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up tklib (0.9-1) ... Setting up tk8.6-dev:amd64 (8.6.17-1) ... Setting up itk3-dev:amd64 (3.4.2-5) ... Setting up libcurl4-gnutls-dev:amd64 (8.15.0-1) ... Setting up tk-dev:amd64 (8.6.16) ... Setting up libstaden-read-dev (1.15.0-1.1+b2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/staden-2.0.0+b11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../staden_2.0.0+b11-5_source.changes dpkg-buildpackage: info: source package staden dpkg-buildpackage: info: source version 2.0.0+b11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/staden-2.0.0+b11' make spotless || true make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11' make[2]: *** No rule to make target 'spotless'. Stop. make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11' rm -f config.log config.status rm -f Makefile shlib.conf staden_config.h system.mk find -name debian -prune -o -name .dir -exec rm '{}' ';' make[1]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:32: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/libcurl_check_config.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:32: the top level configure.in:33: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:33: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_zlib.m4:32: AX_LIB_ZLIB is expanded from... configure.in:33: the top level configure.in:34: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:34: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_lzma.m4:32: AX_LIB_LZMA is expanded from... configure.in:34: the top level configure.in:35: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:35: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_png.m4:34: AX_LIB_PNG is expanded from... configure.in:35: the top level configure.in:40: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:40: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_staden_io_lib.m4:35: AX_LIB_IO_LIB is expanded from... configure.in:40: the top level configure.in:43: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:43: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_curses.m4:37: AX_LIB_CURSES is expanded from... configure.in:43: the top level configure.in:46: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.in:46: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.in:46: the top level configure.in:93: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:93: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:43: TEA_PATH_TCLCONFIG is expanded from... configure.in:93: the top level configure.in:94: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:94: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:355: TEA_LOAD_TCLCONFIG is expanded from... configure.in:94: the top level configure.in:96: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:96: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:200: TEA_PATH_TKCONFIG is expanded from... configure.in:96: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_RUN' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2995: AC_TRY_RUN is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:2704: TEA_TCL_EARLY_FLAG is expanded from... ac_stubs/tcl.m4:2717: TEA_TCL_EARLY_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:148: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:148: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_tklib.m4:27: AX_LIB_TKLIB is expanded from... configure.in:148: the top level configure.in:149: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:149: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_iwidgets.m4:28: AX_LIB_IWIDGETS is expanded from... configure.in:149: the top level configure.in:150: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:150: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itcl.m4:26: AX_LIB_ITCL is expanded from... configure.in:150: the top level configure.in:151: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:151: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itk.m4:26: AX_LIB_ITK is expanded from... configure.in:151: the top level autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/staden-2.0.0+b11' dh_auto_configure -- --enable-64bit \ --with-itcl=/usr/lib/tcltk/x86_64-linux-gnu \ --with-itk=/usr/lib/tcltk/x86_64-linux-gnu ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-64bit --with-itcl=/usr/lib/tcltk/x86_64-linux-gnu --with-itk=/usr/lib/tcltk/x86_64-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for gawk... no checking for mawk... mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 8.15.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for inflateEnd in -lz... yes checking for zlib.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for lzma.h... yes checking for png_create_write_struct in -lpng... yes checking for png.h... yes checking for staden-io_lib-config... no checking for io_lib-config... /usr/bin/io_lib-config checking if io_lib version >= 1.12.5... yes checking for io_lib/Read.h... yes checking for mvwprintw in -lncurses... yes checking for ncurses.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/wait.h that is POSIX.1 compatible... yes checking for fcntl.h... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking for pwd.h... yes checking for -Wdate-time -D_FORTIFY_SOURCE=2 option for large files... none needed checking for declarations of fseeko and ftello... yes checking for library containing cos... -lm checking for popen... yes checking how to run the C preprocessor... gcc -E checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking whether byte ordering is bigendian... no checking for inline... inline checking for correct TEA configuration... ok (TEA 3.9) configure: configuring staden 2.0.0b11-2016 checking for Tcl configuration... found /usr/lib/tclConfig.sh checking for existence of /usr/lib/tclConfig.sh... loading checking platform... unix checking for Tk configuration... found /usr/lib/tkConfig.sh checking for existence of /usr/lib/tkConfig.sh... loading checking for ranlib... ranlib checking for egrep -e... (cached) /usr/bin/grep -E checking if 64bit support is requested... yes checking if 64bit Sparc VIS support is requested... no checking if compiler supports visibility "hidden"... yes checking if rpath support is requested... yes checking system version... Linux-6.12.43+deb13-amd64 checking for ar... ar checking if compiler accepts -m64 flag... yes checking for SEH support in compiler... no checking for EXCEPTION_DISPOSITION support in include files... no checking for winnt.h that ignores VOID define... no checking for cast to union support... yes checking for required early compiler flags... none checking for 64-bit integer type... using long checking for tclsh... /usr/bin/tclsh8.6 checking for Tcl public headers... /usr/include/tcl8.6 checking for Tcl private include files... Using srcdir found in tclConfig.sh: /usr/include/tcl8.6/tcl-private checking for Tk public headers... /usr/include/tcl8.6 checking for Tk private include files... Using srcdir found in tkConfig.sh: /usr/include/tcl8.6/tk-private checking tklib directory... yes (/usr/share/tcltk/tklib0.9) checking iwidgets directory... yes (/usr/share/tcltk/iwidgets4.1.0) checking itcl directory... vers=/3004000/ yes (/usr/lib/tcltk/x86_64-linux-gnu/itcl3.4) checking itk directory... yes (/usr/lib/tcltk/x86_64-linux-gnu/itk3.4) configure: creating ./config.status config.status: creating Makefile config.status: creating system.mk config.status: creating shlib.conf config.status: creating gap5/gap5 config.status: creating gap5/tg_view config.status: creating gap5/tg_index config.status: creating gap5/gap5_cmd config.status: creating gap4/gap4 config.status: creating copy_reads/copy_reads config.status: creating trev/trev config.status: creating prefinish/prefinish config.status: creating pregap4/pregap4 config.status: creating spin/spin config.status: creating staden_config.h ---------------------------------------------------------------------- External packages used: curl: via /usr/bin/curl-config zlib: DIR (system) curses: DIR (system) liblzma: DIR io_lib: via /usr/bin/io_lib-config Tcl: via /usr/lib/tclConfig.sh Tk: via /usr/lib/tkConfig.sh tklib: /usr/share/tcltk/tklib0.9 Iwidgets: /usr/share/tcltk/iwidgets4.1.0 Itcl: /usr/lib/tcltk/x86_64-linux-gnu/itcl3.4 Itk: /usr/lib/tcltk/x86_64-linux-gnu/itk3.4 ---------------------------------------------------------------------- make[1]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11' dh_auto_build make -j40 make[1]: Entering directory '/build/reproducible-path/staden-2.0.0+b11' cd Misc && make -f /build/reproducible-path/staden-2.0.0+b11/./Misc/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./Misc SUBDIR=Misc all cd trev && make -f /build/reproducible-path/staden-2.0.0+b11/./trev/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./trev SUBDIR=trev all cd primer3 && make -f /build/reproducible-path/staden-2.0.0+b11/./primer3/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./primer3 SUBDIR=primer3 all cd primer3/src && make -f /build/reproducible-path/staden-2.0.0+b11/./primer3/src/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./primer3/src SUBDIR=primer3/src all cd pregap4 && make -f /build/reproducible-path/staden-2.0.0+b11/./pregap4/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./pregap4 SUBDIR=pregap4 all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/Misc' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd spin_emboss && make -f /build/reproducible-path/staden-2.0.0+b11/./spin_emboss/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./spin_emboss SUBDIR=spin_emboss all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/trev' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd scripts && make -f /build/reproducible-path/staden-2.0.0+b11/./scripts/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./scripts SUBDIR=scripts all cd data && make -f /build/reproducible-path/staden-2.0.0+b11/./data/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./data SUBDIR=data all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/primer3' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/primer3/src' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/pregap4' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/spin_emboss' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/scripts' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/data' make[2]: warning: -j40 forced in submake: resetting jobserver mode. /build/reproducible-path/staden-2.0.0+b11/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o crash.o -c crash.c make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/trev' /build/reproducible-path/staden-2.0.0+b11/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o date.o -c date.c /build/reproducible-path/staden-2.0.0+b11/./data/Makefile:9: warning: overriding recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' make[2]: Nothing to be done for 'all'. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o primer3_lib.o -c primer3_lib.c make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/primer3' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o filenames.o -c filenames.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o primer3_release.o -c primer3_release.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o oligotm.o -c oligotm.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o files.o -c files.c Nothing to build for Pregap4. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -o dpal_primer.o -c dpal.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o find.o -c find.c Nothing to build for spin_emboss. make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/pregap4' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/spin_emboss' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o format_output.o -c format_output.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o shell.o -c shell.c Nothing to build for data. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o boulder_input.o -c boulder_input.c make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/data' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o strings.o -c strings.c Nothing to build for scripts. mkdir -p /build/reproducible-path/staden-2.0.0+b11/lib 2>/dev/null make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/scripts' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o usleep.o -c usleep.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o primer3_main.o -c primer3_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o error.o -c error.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o xerror.o -c xerror.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o xalloc.o -c xalloc.c touch /build/reproducible-path/staden-2.0.0+b11/lib/.dir gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o vlen.o -c vlen.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o FtoC.o -c FtoC.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o getfile.o -c getfile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o bitmap.o -c bitmap.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o array.o -c array.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o locks.o -c locks.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o array_arith.o -c array_arith.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o parse_db.o -c parse_db.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o dstring.o -c dstring.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o string_alloc.o -c string_alloc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o strtol64.o -c strtol64.c oligotm.c: In function 'oligotm': oligotm.c:297:1: warning: old-style function definition [-Wold-style-definition] 297 | oligotm(s, DNA_nM, K_mM, Mg_mM, dNTP_mM) | ^~~~~~~ oligotm.c: In function 'oligodg': oligotm.c:437:1: warning: old-style function definition [-Wold-style-definition] 437 | oligodg(s) | ^~~~~~~ oligotm.c: In function 'end_oligodg': oligotm.c:489:8: warning: old-style function definition [-Wold-style-definition] 489 | double end_oligodg(s, len) | ^~~~~~~~~~~ oligotm.c: In function 'seqtm': oligotm.c:497:8: warning: old-style function definition [-Wold-style-definition] 497 | double seqtm(seq, dna_conc, salt_conc, Mg_conc, dNTP_conc, nn_max_len) | ^~~~~ oligotm.c: In function 'long_seq_tm': oligotm.c:514:1: warning: old-style function definition [-Wold-style-definition] 514 | long_seq_tm(s, start, len, salt_conc) | ^~~~~~~~~~~ dpal.c: In function 'dpal_set_default_nt_args': dpal.c:79:1: warning: old-style function definition [-Wold-style-definition] 79 | dpal_set_default_nt_args(a) | ^~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function 'dpal_set_h_nt_matrix': dpal.c:113:1: warning: old-style function definition [-Wold-style-definition] 113 | dpal_set_h_nt_matrix(a) | ^~~~~~~~~~~~~~~~~~~~ dpal.c: In function 'dpal_set_ambiguity_code_matrix': dpal.c:145:1: warning: old-style function definition [-Wold-style-definition] 145 | dpal_set_ambiguity_code_matrix(a) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function 'dpal': dpal.c:211:1: warning: old-style function definition [-Wold-style-definition] 211 | dpal(X, Y, in, out) | ^~~~ dpal.c: In function '_dpal_generic': dpal.c:304:1: warning: old-style function definition [-Wold-style-definition] 304 | _dpal_generic(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~ dpal.c: In function '_dpal_long_nopath_generic': dpal.c:559:1: warning: old-style function definition [-Wold-style-definition] 559 | _dpal_long_nopath_generic(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function '_dpal_long_nopath_maxgap1_local': dpal.c:716:1: warning: old-style function definition [-Wold-style-definition] 716 | _dpal_long_nopath_maxgap1_local(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function '_dpal_long_nopath_maxgap1_global_end': dpal.c:798:1: warning: old-style function definition [-Wold-style-definition] 798 | _dpal_long_nopath_maxgap1_global_end(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function 'print_align': dpal.c:898:1: warning: old-style function definition [-Wold-style-definition] 898 | print_align(X,Y,P,I,J, dargs) | ^~~~~~~~~~~ dpal.c: In function 'illegal_char': dpal.c:988:1: warning: old-style function definition [-Wold-style-definition] 988 | illegal_char(X, ssm, out) | ^~~~~~~~~~~~ dpal.c: In function '_dpal_long_nopath_maxgap1_local_end': dpal.c:1003:1: warning: old-style function definition [-Wold-style-definition] 1003 | _dpal_long_nopath_maxgap1_local_end(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'sig_handler': primer3_main.c:158:1: warning: old-style function definition [-Wold-style-definition] 158 | sig_handler(signal) | ^~~~~~~~~~~ primer3_main.c: In function 'boulder_print_pairs': primer3_main.c:180:1: warning: old-style function definition [-Wold-style-definition] 180 | boulder_print_pairs(prog_args, pa, sa, best_pairs) | ^~~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'boulder_print_oligos': primer3_main.c:373:1: warning: old-style function definition [-Wold-style-definition] 373 | boulder_print_oligos(pa, sa, n, l, state) | ^~~~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'print_all_explain': primer3_main.c:457:1: warning: old-style function definition [-Wold-style-definition] 457 | print_all_explain(pa, sa) | ^~~~~~~~~~~~~~~~~ primer3_main.c: In function 'print_explain': primer3_main.c:486:1: warning: old-style function definition [-Wold-style-definition] 486 | print_explain(stat, l) | ^~~~~~~~~~~~~ format_output.c: In function 'print_summary': primer3_main.c: In function 'pr_safe_malloc': primer3_main.c:520:5: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 520 | write(2, pr_program_name, pr_program_name_len), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro 'OOM_ERROR' 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c:521:5: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 521 | write(2, OOM_MESSAGE, OOM_MESSAGE_LEN), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro 'OOM_ERROR' 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ format_output.c:202:1: warning: old-style function definition [-Wold-style-definition] 202 | print_summary(f, pa, sa, best_pairs, num) | ^~~~~~~~~~~~~ format_output.c: In function 'print_oligo_header': format_output.c:239:1: warning: old-style function definition [-Wold-style-definition] 239 | print_oligo_header(f, s, print_lib_sim) | ^~~~~~~~~~~~~~~~~~ format_output.c: In function 'print_oligo': format_output.c:250:1: warning: old-style function definition [-Wold-style-definition] 250 | print_oligo(f, title, sa, o, dir, pa, seqlib, print_lib_sim) | ^~~~~~~~~~~ format_output.c: In function 'print_pair_array': format_output.c:283:1: warning: old-style function definition [-Wold-style-definition] 283 | print_pair_array(f, title, num, array, pa, sa) | ^~~~~~~~~~~~~~~~ format_output.c: In function 'print_seq': format_output.c:311:1: warning: old-style function definition [-Wold-style-definition] 311 | print_seq(f, pa, sa, h, best_pairs, num) | ^~~~~~~~~ format_output.c: In function 'print_seq_lines': format_output.c:453:1: warning: old-style function definition [-Wold-style-definition] 453 | print_seq_lines(f, s, n, seq_size, line_size, something_found, pa) | ^~~~~~~~~~~~~~~ format_output.c: In function 'print_pair_info': format_output.c:481:1: warning: old-style function definition [-Wold-style-definition] 481 | print_pair_info(f, p, pa) | ^~~~~~~~~~~~~~~ format_output.c: In function 'print_rest': format_output.c:499:1: warning: old-style function definition [-Wold-style-definition] 499 | print_rest(f, pa, sa, best_pairs) | ^~~~~~~~~~ format_output.c: In function 'print_explain': format_output.c:531:1: warning: old-style function definition [-Wold-style-definition] 531 | print_explain(f, pa, sa, print_lib_sim) | ^~~~~~~~~~~~~ format_output.c: In function 'print_stat_line': format_output.c:613:1: warning: old-style function definition [-Wold-style-definition] 613 | print_stat_line(f, t, s, print_lib_sim) | ^~~~~~~~~~~~~~~ format_output.c: In function 'lib_sim_specified': format_output.c:641:1: warning: old-style function definition [-Wold-style-definition] 641 | lib_sim_specified(pa) | ^~~~~~~~~~~~~~~~~ format_output.c: In function 'print_oligo_summary': format_output.c:648:1: warning: old-style function definition [-Wold-style-definition] 648 | print_oligo_summary(f, pa, sa, h, l, num) | ^~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'adjust_base_index_interval_list': boulder_input.c:518:1: warning: old-style function definition [-Wold-style-definition] 518 | adjust_base_index_interval_list(intervals, num, first_index) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'read_line': boulder_input.c:532:1: warning: old-style function definition [-Wold-style-definition] 532 | read_line(perr, file) | ^~~~~~~~~ boulder_input.c: In function 'tag_syntax_error': boulder_input.c:579:1: warning: old-style function definition [-Wold-style-definition] 579 | tag_syntax_error(perr, tag_name, datum, err) | ^~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_align_score': boulder_input.c:591:1: warning: old-style function definition [-Wold-style-definition] 591 | parse_align_score(perr, tag_name, datum, out, err) | ^~~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_double': boulder_input.c:611:1: warning: old-style function definition [-Wold-style-definition] 611 | parse_double(perr, tag_name, datum, out, err) | ^~~~~~~~~~~~ boulder_input.c: In function 'parse_int': boulder_input.c:636:1: warning: old-style function definition [-Wold-style-definition] 636 | parse_int(perr, tag_name, datum, out, err) | ^~~~~~~~~ boulder_input.c: In function 'parse_interval_list': boulder_input.c:726:1: warning: old-style function definition [-Wold-style-definition] 726 | parse_interval_list(perr, tag_name, datum, count, interval_array, err) | ^~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_product_size': boulder_input.c:752:1: warning: old-style function definition [-Wold-style-definition] 752 | parse_product_size(perr, tag_name, in, pa, err) | ^~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'read_seq_lib': boulder_input.c:800:1: warning: old-style function definition [-Wold-style-definition] 800 | read_seq_lib(perr, lib, filename, errfrag) | ^~~~~~~~~~~~ boulder_input.c: In function 'upcase_and_check_char': boulder_input.c:917:14: warning: old-style function definition [-Wold-style-definition] 917 | static short upcase_and_check_char(s) | ^~~~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_seq_name': boulder_input.c:963:1: warning: old-style function definition [-Wold-style-definition] 963 | parse_seq_name(s) | ^~~~~~~~~~~~~~ boulder_input.c: In function 'reverse_complement_seq_lib': boulder_input.c:983:1: warning: old-style function definition [-Wold-style-definition] 983 | reverse_complement_seq_lib(perr, lib) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_seq_quality': boulder_input.c:1019:1: warning: old-style function definition [-Wold-style-definition] 1019 | parse_seq_quality(s, num) | ^~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'add_must_use_warnings': primer3_lib.c:854:1: warning: old-style function definition [-Wold-style-definition] 854 | add_must_use_warnings(state, sa, text, stats) | ^~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'oligo_pair_seen': primer3_lib.c:894:1: warning: old-style function definition [-Wold-style-definition] 894 | oligo_pair_seen(pair, retpair) | ^~~~~~~~~~~~~~~ primer3_lib.c: In function 'make_lists': primer3_lib.c:932:1: warning: old-style function definition [-Wold-style-definition] 932 | make_lists(pa, sa, state) | ^~~~~~~~~~ primer3_lib.c: In function 'make_internal_oligos_list': primer3_lib.c:1128:1: warning: old-style function definition [-Wold-style-definition] 1128 | make_internal_oligos_list(pa, sa, state) | ^~~~~~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'oligo_param': primer3_lib.c:1204:1: warning: old-style function definition [-Wold-style-definition] 1204 | oligo_param(pa, h, l, state, sa, stats) | ^~~~~~~~~~~ primer3_lib.c: In function 'check_sequence_quality': primer3_lib.c:1426:1: warning: old-style function definition [-Wold-style-definition] 1426 | check_sequence_quality(pa, h, l, sa, j, k, r_min_q, r_min_q_end) | ^~~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'gc_and_n_content': primer3_lib.c:1488:1: warning: old-style function definition [-Wold-style-definition] 1488 | gc_and_n_content(start, len, sequence, h) | ^~~~~~~~~~~~~~~~ primer3_lib.c: In function 'oligo_overlaps_interval': primer3_lib.c:1511:1: warning: old-style function definition [-Wold-style-definition] 1511 | oligo_overlaps_interval(start, len, intervals, num_intervals) | ^~~~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'p_obj_fn': primer3_lib.c:1527:1: warning: old-style function definition [-Wold-style-definition] 1527 | p_obj_fn(pa, h, j) | ^~~~~~~~ primer3_lib.c: In function 'print_list': primer3_lib.c:1617:1: warning: old-style function definition [-Wold-style-definition] 1617 | print_list(sa, pa, state) | ^~~~~~~~~~ primer3_lib.c: In function 'create_and_print_file': primer3_lib.c:1646:1: warning: old-style function definition [-Wold-style-definition] 1646 | create_and_print_file(sa, n, oligo_arr, o_type, | ^~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'print_list_header': primer3_lib.c:1673:1: warning: old-style function definition [-Wold-style-definition] 1673 | print_list_header(fh, type, first_base_index, print_lib_sim) | ^~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'print_oligo': primer3_lib.c:1695:1: warning: old-style function definition [-Wold-style-definition] 1695 | print_oligo(fh, sa, index, h, type, first_base_index, print_lib_sim) | ^~~~~~~~~~~ primer3_lib.c: In function 'choose_pair': primer3_lib.c:1727:1: warning: old-style function definition [-Wold-style-definition] 1727 | choose_pair(pa, sa, int_num, p, state) | ^~~~~~~~~~~ primer3_lib.c: In function 'choose_internal_oligo': primer3_lib.c:1836:1: warning: old-style function definition [-Wold-style-definition] 1836 | choose_internal_oligo(left, right, nm, sa, pa, state) | ^~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'primer_rec_comp': primer3_lib.c:1872:1: warning: old-style function definition [-Wold-style-definition] 1872 | primer_rec_comp(x1, x2) | ^~~~~~~~~~~~~~~ primer3_lib.c: In function 'primer_pair_comp': primer3_lib.c:1894:1: warning: old-style function definition [-Wold-style-definition] 1894 | primer_pair_comp(x1, x2) | ^~~~~~~~~~~~~~~~ primer3_lib.c: In function 'pair_param': primer3_lib.c:1940:1: warning: old-style function definition [-Wold-style-definition] 1940 | pair_param(pa, sa, m, n, int_num, h, state) | ^~~~~~~~~~ primer3_lib.c: In function 'compute_position_penalty': primer3_lib.c:2080:1: warning: old-style function definition [-Wold-style-definition] 2080 | compute_position_penalty(pa, sa, h, o_type) | ^~~~~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'pair_spans_target': primer3_lib.c:2136:1: warning: old-style function definition [-Wold-style-definition] 2136 | pair_spans_target(pair, sa) | ^~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'obj_fn': primer3_lib.c:2160:1: warning: old-style function definition [-Wold-style-definition] 2160 | obj_fn(pa, h) | ^~~~~~ primer3_lib.c: In function 'check_intervals': primer3_lib.c:2616:1: warning: old-style function definition [-Wold-style-definition] 2616 | check_intervals(state, tag_name, num_intervals, intervals, seq_len, sa) | ^~~~~~~~~~~~~~~ primer3_lib.c: In function 'align': primer3_lib.c:2655:1: warning: old-style function definition [-Wold-style-definition] 2655 | align(state, s1, s2, a) | ^~~~~ primer3_lib.c: In function 'set_dpal_args': primer3_lib.c:2669:1: warning: old-style function definition [-Wold-style-definition] 2669 | set_dpal_args(a) | ^~~~~~~~~~~~~ primer3_lib.c: In function 'oligo_compl': primer3_lib.c:2704:1: warning: old-style function definition [-Wold-style-definition] 2704 | oligo_compl(h, ha, sa, l, state) | ^~~~~~~~~~~ primer3_lib.c: In function 'oligo_mispriming': primer3_lib.c:2768:1: warning: old-style function definition [-Wold-style-definition] 2768 | oligo_mispriming(h, ha, sa, l, state) | ^~~~~~~~~~~~~~~~ primer3_lib.c: In function 'pair_repeat_sim': primer3_lib.c:2847:1: warning: old-style function definition [-Wold-style-definition] 2847 | pair_repeat_sim(h, pa) | ^~~~~~~~~~~~~~~ primer3_lib.c: In function 'free_repeat_sim_score': primer3_lib.c:2934:1: warning: old-style function definition [-Wold-style-definition] 2934 | free_repeat_sim_score(state) | ^~~~~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'boulder_print_oligos': primer3_main.c:416:32: warning: '%d' directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 416 | else sprintf(suffix, "_%d", i); | ^~ primer3_main.c:416:30: note: directive argument in the range [1, 2147483647] 416 | else sprintf(suffix, "_%d", i); | ^~~~~ In file included from /usr/include/stdio.h:970, from primer3_main.c:7: In function 'sprintf', inlined from 'boulder_print_oligos' at primer3_main.c:416:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ parse_db.c: In function 'parse_entry': parse_db.c:234:66: warning: '%s' directive writing up to 8191 bytes into a region of size 8162 [-Wformat-overflow=] 234 | sprintf(buf, "Warning - unknown identifier \"%s\"\n",word); | ^~ ~~~~ In file included from /usr/include/stdio.h:970, from parse_db.c:19: In function 'sprintf', inlined from 'parse_entry' at parse_db.c:234:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 33 and 8224 bytes into a destination of size 8192 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'main': primer3_main.c:234:32: warning: '%d' directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 234 | else sprintf(suffix, "_%d", i); | ^~ In function 'boulder_print_pairs', inlined from 'main' at primer3_main.c:109:3: primer3_main.c:234:30: note: directive argument in the range [1, 2147483646] 234 | else sprintf(suffix, "_%d", i); | ^~~~~ In function 'sprintf', inlined from 'boulder_print_pairs' at primer3_main.c:234:7, inlined from 'main' at primer3_main.c:109:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libmisc.so crash.o date.o filenames.o files.o find.o shell.o strings.o usleep.o error.o xerror.o xalloc.o vlen.o FtoC.o getfile.o bitmap.o array.o locks.o array_arith.o parse_db.o dstring.o string_alloc.o strtol64.o -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/Misc' cd tk_utils && make -f /build/reproducible-path/staden-2.0.0+b11/./tk_utils/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./tk_utils SUBDIR=tk_utils all cd text_utils && make -f /build/reproducible-path/staden-2.0.0+b11/./text_utils/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./text_utils SUBDIR=text_utils all cd abi && make -f /build/reproducible-path/staden-2.0.0+b11/./abi/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./abi SUBDIR=abi all cd alf && make -f /build/reproducible-path/staden-2.0.0+b11/./alf/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./alf SUBDIR=alf all cd g && make -f /build/reproducible-path/staden-2.0.0+b11/./g/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./g SUBDIR=g all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/tk_utils' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd eba && make -f /build/reproducible-path/staden-2.0.0+b11/./eba/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./eba SUBDIR=eba all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/text_utils' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd init_exp && make -f /build/reproducible-path/staden-2.0.0+b11/./init_exp/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./init_exp SUBDIR=init_exp all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/abi' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd get_scf_field && make -f /build/reproducible-path/staden-2.0.0+b11/./get_scf_field/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./get_scf_field SUBDIR=get_scf_field all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/alf' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd hetins && make -f /build/reproducible-path/staden-2.0.0+b11/./hetins/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./hetins SUBDIR=hetins all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/g' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/eba' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/init_exp' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/get_scf_field' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/hetins' make[2]: warning: -j40 forced in submake: resetting jobserver mode. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o text_output_stubs.o -c text_output_stubs.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o abiIO.o -c abiIO.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./alf -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o alfsplit.o -c alfsplit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o text_output_stubs2.o -c text_output_stubs2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o cli_arg.o -c cli_arg.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o getABISampleName.o -c getABISampleName.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXkeylist.o -c tclXkeylist.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o getABIcomment.o -c getABIcomment.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./eba -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o qual.o -c qual.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXutil.o -c tclXutil.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o getABIdate.o -c getABIdate.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./get_scf_field -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o get_scf_field.o -c get_scf_field.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_utils.o -c tcl_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o getABIfield.o -c getABIfield.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./eba -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o conf.o -c conf.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./hetins -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o hetins.o -c hetins.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./init_exp -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o init_exp.o -c init_exp.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_debug.o -c tcl_debug.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o misc.o -c misc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o freetree.o -c freetree.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o init.o -c init.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o text_output.o -c text_output.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRaster.o -c tkRaster.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRasterBuiltIn.o -c tkRasterBuiltIn.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o sheet.o -c sheet.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet.o -c tkSheet.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet_common.o -c tkSheet_common.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o trace_print.o -c trace_print.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o postscript.o -c postscript.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o split.o -c split.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTrace.o -c tkTrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceComp.o -c tkTraceComp.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceIO.o -c tkTraceIO.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceDisp.o -c tkTraceDisp.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o capture.o -c capture.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o canvas_box.o -c canvas_box.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o ruler_tick.o -c ruler_tick.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o restriction_enzyme_map.o -c restriction_enzyme_map.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o element_canvas.o -c element_canvas.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container.o -c container.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container_ruler.o -c container_ruler.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_io_lib.o -c tcl_io_lib.c alfsplit.c: In function 'main': tclXkeylist.c: In function 'ValidateKey': tclXkeylist.c:216:1: warning: old-style function definition [-Wold-style-definition] 216 | ValidateKey (interp, key, keyLen, isPath) | ^~~~~~~~~~~ tclXkeylist.c: In function 'FreeKeyedListData': tclXkeylist.c:286:1: warning: old-style function definition [-Wold-style-definition] 286 | FreeKeyedListData (keylIntPtr) | ^~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'EnsureKeyedListSpace': tclXkeylist.c:312:1: warning: old-style function definition [-Wold-style-definition] 312 | EnsureKeyedListSpace (keylIntPtr, newNumEntries) | ^~~~~~~~~~~~~~~~~~~~ alfsplit.c:347:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 347 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'DeleteKeyedListEntry': tclXkeylist.c:345:1: warning: old-style function definition [-Wold-style-definition] 345 | DeleteKeyedListEntry (keylIntPtr, entryIdx) | ^~~~~~~~~~~~~~~~~~~~ alfsplit.c:363:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 363 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'FindKeyedListEntry': tclXkeylist.c:377:1: warning: old-style function definition [-Wold-style-definition] 377 | FindKeyedListEntry (keylIntPtr, key, keyLenPtr, nextSubKeyPtr) | ^~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'ObjToKeyedListEntry': tclXkeylist.c:433:1: warning: old-style function definition [-Wold-style-definition] 433 | ObjToKeyedListEntry (interp, objPtr, entryPtr) | ^~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'FreeKeyedListInternalRep': tclXkeylist.c:483:1: warning: old-style function definition [-Wold-style-definition] 483 | FreeKeyedListInternalRep (keylPtr) | ^~~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'DupKeyedListInternalRep': tclXkeylist.c:499:1: warning: old-style function definition [-Wold-style-definition] 499 | DupKeyedListInternalRep (srcPtr, copyPtr) | ^~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'SetKeyedListFromAny': alfsplit.c: In function 'readIndexEntry': alfsplit.c:129:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 129 | fread (ent->label,40,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:135:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fread (junk,70,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c:540:1: warning: old-style function definition [-Wold-style-definition] 540 | SetKeyedListFromAny (interp, objPtr) | ^~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'UpdateStringOfKeyedList': tclXkeylist.c:586:1: warning: old-style function definition [-Wold-style-definition] 586 | UpdateStringOfKeyedList (keylPtr) | ^~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'TclX_KeylgetObjCmd': tclXkeylist.c:949:1: warning: old-style function definition [-Wold-style-definition] 949 | TclX_KeylgetObjCmd (clientData, interp, objc, objv) | ^~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'TclX_KeylsetObjCmd': tclXkeylist.c:1030:1: warning: old-style function definition [-Wold-style-definition] 1030 | TclX_KeylsetObjCmd (clientData, interp, objc, objv) | ^~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'TclX_KeyldelObjCmd': tclXkeylist.c:1088:1: warning: old-style function definition [-Wold-style-definition] 1088 | TclX_KeyldelObjCmd (clientData, interp, objc, objv) | ^~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'TclX_KeylkeysObjCmd': tclXkeylist.c:1151:1: warning: old-style function definition [-Wold-style-definition] 1151 | TclX_KeylkeysObjCmd (clientData, interp, objc, objv) | ^~~~~~~~~~~~~~~~~~~ capture.c: In function 'tcl_capture': capture.c:53:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | read(fd, buf, statbuf.st_size); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tkRasterBuiltIn.c: In function 'RasterBuiltInInit': tkRasterBuiltIn.c:227:5: warning: old-style function definition [-Wold-style-definition] 227 | int RasterBuiltInInit (interp) | ^~~~~~~~~~~~~~~~~ alfsplit.c: In function 'main': alfsplit.c:312:29: warning: '%s' directive writing up to 2559 bytes into a region of size 25 [-Wformat-overflow=] 312 | sprintf (fname,"%sALF",name[i]) ; | ^~ In file included from /usr/include/stdio.h:970, from alfsplit.c:30: In function 'sprintf', inlined from 'main' at alfsplit.c:312:6: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 4 and 2563 bytes into a destination of size 25 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o get_scf_field get_scf_field.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABISampleName abiIO.o getABISampleName.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIcomment abiIO.o getABIcomment.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libtext_utils.so text_output_stubs.o text_output_stubs2.o -lmisc gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIdate abiIO.o getABIdate.o -lmisc -lm gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o init_exp init_exp.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm tkRaster.c: In function 'RasterAddPrimitive': tkRaster.c:541:5: warning: old-style function definition [-Wold-style-definition] 541 | int RasterAddPrimitive (interp, primitivename, drawproc, initproc, freeproc) | ^~~~~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterWidgetCmd': tkRaster.c:586:1: warning: old-style function definition [-Wold-style-definition] 586 | RasterWidgetCmd(clientData, interp, argc, argv) | ^~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterDraw': tkRaster.c:1247:1: warning: old-style function definition [-Wold-style-definition] 1247 | RasterDraw (interp, RasterPtr, implemPtr, argc, argv) | ^~~~~~~~~~ tkRaster.c: In function 'ConfigureRaster': tkRaster.c:1345:1: warning: old-style function definition [-Wold-style-definition] 1345 | ConfigureRaster(interp, RasterPtr, argc, argv, flags) | ^~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterEventProc': tkRaster.c:1504:1: warning: old-style function definition [-Wold-style-definition] 1504 | RasterEventProc(clientData, eventPtr) | ^~~~~~~~~~~~~~~ tkRaster.c: In function 'arrangeDisplay': tkRaster.c:2003:1: warning: old-style function definition [-Wold-style-definition] 2003 | arrangeDisplay (RasterPtr, x0, y0, x1, y1, type) | ^~~~~~~~~~~~~~ tkRaster.c: In function 'arrangeExpose': tkRaster.c:2045:1: warning: old-style function definition [-Wold-style-definition] 2045 | arrangeExpose (RasterPtr, x0, y0, x1, y1) | ^~~~~~~~~~~~~ tkRaster.c: In function 'ConfigDrawEnv': tkRaster.c:2159:12: warning: old-style function definition [-Wold-style-definition] 2159 | static int ConfigDrawEnv (interp, RasterPtr, drawEnv, argc, argv) | ^~~~~~~~~~~~~ tkRaster.c: In function 'DrawEnvIndex': tkRaster.c:2250:5: warning: old-style function definition [-Wold-style-definition] 2250 | int DrawEnvIndex (interp, rasterptr, drawenvno, drawenvptrptr) | ^~~~~~~~~~~~ In file included from tkRaster.c:45: tkRaster.c:2266:62: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2266 | entryPtr = Tcl_FindHashEntry (&(RasterPtr->drawEnvTable), (char*)drawenvno); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro 'Tcl_FindHashEntry' 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ tkRaster.c: In function 'GetDrawEnv': tkRaster.c:2277:6: warning: old-style function definition [-Wold-style-definition] 2277 | void GetDrawEnv (rasterptr, drawenvptr) | ^~~~~~~~~~ tkRaster.c: In function 'SetDrawEnv': tkRaster.c:2289:5: warning: old-style function definition [-Wold-style-definition] 2289 | int SetDrawEnv (interp, rasterptr, drawenvptr) | ^~~~~~~~~~ tkRaster.c: In function 'CreateDrawEnv': tkRaster.c:2313:12: warning: old-style function definition [-Wold-style-definition] 2313 | static int CreateDrawEnv (interp, RasterPtr, argc, argv) | ^~~~~~~~~~~~~ tkRaster.c:2353:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2353 | (char*) (RasterPtr->drawEnvCount), | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2573:62: note: in definition of macro 'Tcl_CreateHashEntry' 2573 | (*((tablePtr)->createProc))(tablePtr, (const char *)(key), newPtr) | ^~~ tkRaster.c: In function 'DestroyDrawEnv': tkRaster.c:2369:13: warning: old-style function definition [-Wold-style-definition] 2369 | static void DestroyDrawEnv (RasterPtr, drawenvptr) | ^~~~~~~~~~~~~~ tkRaster.c:2381:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2381 | (char*)(drawenvptr->index)); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro 'Tcl_FindHashEntry' 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ tkRaster.c: In function 'myOptionParse': tkRaster.c:2394:1: warning: old-style function definition [-Wold-style-definition] 2394 | myOptionParse (clientData, interp, tkwin, value, widgRec, offset) | ^~~~~~~~~~~~~ tkRaster.c: In function 'myOptionPrint': tkRaster.c:2428:1: warning: old-style function definition [-Wold-style-definition] 2428 | myOptionPrint (clientData, tkwin, widgRec, offset, freeProcPtr) | ^~~~~~~~~~~~~ tkRaster.c: In function 'WorldToRaster': tkRaster.c:2517:6: warning: old-style function definition [-Wold-style-definition] 2517 | void WorldToRaster (raster, wx, wy, rx, ry) | ^~~~~~~~~~~~~ tkRaster.c: In function 'RasterToWorld': tkRaster.c:2537:6: warning: old-style function definition [-Wold-style-definition] 2537 | void RasterToWorld (raster, rx, ry, wx, wy) | ^~~~~~~~~~~~~ tkRaster.c: In function 'SetRasterModifiedArea': tkRaster.c:2565:6: warning: old-style function definition [-Wold-style-definition] 2565 | void SetRasterModifiedArea (raster, rx0, ry0, rx1, ry1) | ^~~~~~~~~~~~~~~~~~~~~ tkRaster.c: In function 'GetRasterDrawable': tkRaster.c:2597:10: warning: old-style function definition [-Wold-style-definition] 2597 | Drawable GetRasterDrawable (raster) | ^~~~~~~~~~~~~~~~~ tkRaster.c: In function 'GetRasterDisplay': tkRaster.c:2603:10: warning: old-style function definition [-Wold-style-definition] 2603 | Display* GetRasterDisplay (raster) | ^~~~~~~~~~~~~~~~ tkRaster.c: In function 'GetRasterTkWin': tkRaster.c:2609:11: warning: old-style function definition [-Wold-style-definition] 2609 | Tk_Window GetRasterTkWin (raster) | ^~~~~~~~~~~~~~ tkRaster.c: In function 'GetRasterGC': tkRaster.c:2615:4: warning: old-style function definition [-Wold-style-definition] 2615 | GC GetRasterGC (raster) | ^~~~~~~~~~~ tkRaster.c: In function 'RasterDrawPoints': tkRaster.c:2628:6: warning: old-style function definition [-Wold-style-definition] 2628 | void RasterDrawPoints (raster, coord, npts) | ^~~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterDrawLines': tkRaster.c:2749:6: warning: old-style function definition [-Wold-style-definition] 2749 | void RasterDrawLines (raster, coord, npts) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/text_utils' tkRaster.c: In function 'RasterDrawRectangles': tkRaster.c:2875:6: warning: old-style function definition [-Wold-style-definition] 2875 | void RasterDrawRectangles (raster, coord, nrects) | ^~~~~~~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterFillRectangles': tkRaster.c:2923:6: warning: old-style function definition [-Wold-style-definition] 2923 | void RasterFillRectangles (raster, coord, nrects) | ^~~~~~~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterFillPolygon': tkRaster.c:2971:6: warning: old-style function definition [-Wold-style-definition] 2971 | void RasterFillPolygon (raster, coord, npts) | ^~~~~~~~~~~~~~~~~ tkTraceDisp.c: In function 'trace_draw_numbers': tkTraceDisp.c:746:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 746 | sprintf(number, "%d", cind); | ^ In file included from /usr/include/stdio.h:970, from tkTraceDisp.c:2: In function 'sprintf', inlined from 'trace_draw_numbers' at tkTraceDisp.c:746:6: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o alfsplit alfsplit.o -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/alf' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/get_scf_field' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/init_exp' gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIfield abiIO.o getABIfield.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/abi' gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libg.so g-files.o g-db.o g-struct.o freetree.o g-error.o g-io.o g-connect.o g-request.o -lmisc g++ -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o hetins hetins.o -lmisc -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o eba qual.o conf.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/g' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/eba' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/hetins' gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libprimer3.so primer3_lib.o primer3_release.o oligotm.o dpal_primer.o format_output.o boulder_input.o -lm gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o primer3_core primer3_main.o -lprimer3 -lm -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/primer3/src' gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libtk_utils.so cli_arg.o tclXkeylist.o tclXutil.o tcl_utils.o tcl_debug.o misc.o init.o text_output.o tkRaster.o tkRasterBuiltIn.o sheet.o tkSheet.o tkSheet_common.o trace_print.o postscript.o split.o tkTrace.o tkTraceComp.o tkTraceIO.o tkTraceDisp.o capture.o canvas_box.o ruler_tick.o restriction_enzyme_map.o element_canvas.o container.o container_ruler.o tcl_io_lib.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/x86_64-linux-gnu -ltk8.6 -L/usr/lib/x86_64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lmisc -lpng -lz make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/tk_utils' cd seq_utils && make -f /build/reproducible-path/staden-2.0.0+b11/./seq_utils/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./seq_utils SUBDIR=seq_utils all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/seq_utils' make[2]: warning: -j40 forced in submake: resetting jobserver mode. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align.o -c align.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_lib_old.o -c align_lib_old.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_ss.o -c align_ss.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_ss2.o -c align_ss2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_sv.o -c align_sv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o dna_utils.o -c dna_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o genetic_code.o -c genetic_code.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o renz_utils.o -c renz_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o sequence_formats.o -c sequence_formats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o scramble.o -c scramble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o base_comp.o -c base_comp.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o open_reading_frames.o -c open_reading_frames.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o edge.o -c edge.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o search_utils.o -c search_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_lib.o -c align_lib.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o filter_words.o -c filter_words.c align_ss.c: In function 'align': align_ss2.c: In function 'align': align_ss.c:48:16: warning: old-style function definition [-Wold-style-definition] 48 | static FastInt align(A,B,M,N,tb,te,topr,botr,lc,rc) unsigned char *A, *B; FastInt M, N; | ^~~~~ align_ss2.c:144:12: warning: old-style function definition [-Wold-style-definition] 144 | static int align(A,B,M,N,tb,te,sc,sr,ec,er) | ^~~~~ align_ss.c: In function 'align_ss': align_ss.c:276:9: warning: old-style function definition [-Wold-style-definition] 276 | FastInt align_ss(A,B,M,N,low,up,W,G,H,S,s1,s2,e1,e2) | ^~~~~~~~ align_ss2.c: In function 'align_ss2': align_ss2.c:343:9: warning: old-style function definition [-Wold-style-definition] 343 | FastInt align_ss2(A,B,M,N,low,up,W,G,H,S,s1,s2,e1,e2) | ^~~~~~~~~ align_ss2.c: In function 'display_ss2': align_ss.c: In function 'display_ss': align_ss2.c:384:6: warning: old-style function definition [-Wold-style-definition] 384 | void display_ss2(A,B,M,N,S,AP,BP) | ^~~~~~~~~~~ align_ss.c:325:6: warning: old-style function definition [-Wold-style-definition] 325 | void display_ss(A,B,M,N,S,AP,BP) | ^~~~~~~~~~ align.c:12:36: error: initialization of 'FastInt (*)(void)' {aka 'int (*)(void)'} from incompatible pointer type 'FastInt (*)(char *, char *, FastInt, FastInt, FastInt, FastInt, FastInt (*)[128], FastInt, FastInt, FastInt *, FastInt, FastInt, FastInt, FastInt)' {aka 'int (*)(char *, char *, int, int, int, int, int (*)[128], int, int, int *, int, int, int, int)'} [-Wincompatible-pointer-types] 12 | static FastInt (*align_arr[])() = {align_ss, | ^~~~~~~~ align.c:12:36: note: (near initialization for 'align_arr[0]') In file included from align.c:6: align.h:60:16: note: 'align_ss' declared here 60 | extern FastInt align_ss(char *A, char *B, FastInt M, FastInt N, | ^~~~~~~~ align.c:13:36: error: initialization of 'FastInt (*)(void)' {aka 'int (*)(void)'} from incompatible pointer type 'FastInt (*)(char *, FastInt (*)[6], FastInt, FastInt, FastInt, FastInt, FastInt (*)[128], FastInt, FastInt, FastInt *, FastInt, FastInt, FastInt, FastInt)' {aka 'int (*)(char *, int (*)[6], int, int, int, int, int (*)[128], int, int, int *, int, int, int, int)'} [-Wincompatible-pointer-types] 13 | align_sv, | ^~~~~~~~ align.c:13:36: note: (near initialization for 'align_arr[1]') align.h:70:16: note: 'align_sv' declared here 70 | extern FastInt align_sv(char *A, FastInt (*B)[6], FastInt M, | ^~~~~~~~ align.c:15:36: error: initialization of 'FastInt (*)(void)' {aka 'int (*)(void)'} from incompatible pointer type 'FastInt (*)(char *, char *, FastInt, FastInt, FastInt, FastInt, FastInt (*)[128], FastInt, FastInt, FastInt *, FastInt, FastInt, FastInt, FastInt)' {aka 'int (*)(char *, char *, int, int, int, int, int (*)[128], int, int, int *, int, int, int, int)'} [-Wincompatible-pointer-types] 15 | align_ss2}; | ^~~~~~~~~ align.c:15:36: note: (near initialization for 'align_arr[3]') align.h:65:16: note: 'align_ss2' declared here 65 | extern FastInt align_ss2(char *A, char *B, FastInt M, FastInt N, | ^~~~~~~~~ align.c:16:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, char *, FastInt, FastInt, FastInt *, FastInt, FastInt)' {aka 'void (*)(char *, char *, int, int, int *, int, int)'} [-Wincompatible-pointer-types] 16 | static void (*display_arr[])() = {display_ss, | ^~~~~~~~~~ align.c:16:36: note: (near initialization for 'display_arr[0]') align.h:80:13: note: 'display_ss' declared here 80 | extern void display_ss(char *A, char *B, FastInt M, FastInt N, | ^~~~~~~~~~ align.c:17:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, FastInt (*)[6], FastInt, FastInt, FastInt *, FastInt, FastInt)' {aka 'void (*)(char *, int (*)[6], int, int, int *, int, int)'} [-Wincompatible-pointer-types] 17 | display_sv, | ^~~~~~~~~~ align.c:17:36: note: (near initialization for 'display_arr[1]') align.h:86:13: note: 'display_sv' declared here 86 | extern void display_sv(char *A, FastInt (*B)[6], FastInt M, FastInt N, | ^~~~~~~~~~ align.c:18:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, FastInt (*)[6], FastInt, FastInt, FastInt *, FastInt, FastInt)' {aka 'void (*)(char *, int (*)[6], int, int, int *, int, int)'} [-Wincompatible-pointer-types] 18 | display_sv, | ^~~~~~~~~~ align.c:18:36: note: (near initialization for 'display_arr[2]') align.h:86:13: note: 'display_sv' declared here 86 | extern void display_sv(char *A, FastInt (*B)[6], FastInt M, FastInt N, | ^~~~~~~~~~ align.c:19:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, char *, FastInt, FastInt, FastInt *, FastInt, FastInt)' {aka 'void (*)(char *, char *, int, int, int *, int, int)'} [-Wincompatible-pointer-types] 19 | display_ss2}; | ^~~~~~~~~~~ align.c:19:36: note: (near initialization for 'display_arr[3]') align.h:83:13: note: 'display_ss2' declared here 83 | extern void display_ss2(char *A, char *B, FastInt M, FastInt N, | ^~~~~~~~~~~ align_sv.c: In function 'align': align.c:20:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, char *, int, int, char *, char *, int *, int *, FastInt *, int)' {aka 'void (*)(char *, char *, int, int, char *, char *, int *, int *, int *, int)'} [-Wincompatible-pointer-types] 20 | static void (*expand_arr[])() = {expand, | ^~~~~~ align.c:20:36: note: (near initialization for 'expand_arr[0]') align_sv.c:55:16: warning: old-style function definition [-Wold-style-definition] 55 | static FastInt align(A,B,M,N,tb,te,topr,botr,lc,rc) | ^~~~~ In file included from align.h:89: align_lib_old.h:8:13: note: 'expand' declared here 8 | extern void expand(char *A, char *B, int M, int N, | ^~~~~~ align.c:21:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, FastInt (*)[6], int, int, char *, FastInt (*)[6], int *, int *, FastInt *, int)' {aka 'void (*)(char *, int (*)[6], int, int, char *, int (*)[6], int *, int *, int *, int)'} [-Wincompatible-pointer-types] 21 | expand_6, | ^~~~~~~~ align.c:21:36: note: (near initialization for 'expand_arr[1]') align_lib_old.h:11:13: note: 'expand_6' declared here 11 | extern void expand_6(char *A, FastInt (*B)[6], int M, int N, | ^~~~~~~~ align.c:22:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, FastInt (*)[6], int, int, char *, FastInt (*)[6], int *, int *, FastInt *, int)' {aka 'void (*)(char *, int (*)[6], int, int, char *, int (*)[6], int *, int *, int *, int)'} [-Wincompatible-pointer-types] 22 | expand_6, | ^~~~~~~~ align.c:22:36: note: (near initialization for 'expand_arr[2]') align_lib_old.h:11:13: note: 'expand_6' declared here 11 | extern void expand_6(char *A, FastInt (*B)[6], int M, int N, | ^~~~~~~~ align.c:23:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, char *, int, int, char *, char *, int *, int *, FastInt *, int)' {aka 'void (*)(char *, char *, int, int, char *, char *, int *, int *, int *, int)'} [-Wincompatible-pointer-types] 23 | expand}; | ^~~~~~ align.c:23:36: note: (near initialization for 'expand_arr[3]') align_lib_old.h:8:13: note: 'expand' declared here 8 | extern void expand(char *A, char *B, int M, int N, | ^~~~~~ align.c: In function 'calignm': align.c:120:14: error: too many arguments to function 'align_arr[ajob]'; expected 0, have 14 120 | retval = align_arr[ajob](seq1, seq2, (FastInt)len1, (FastInt)len2, | ^~~~~~~~~ ~~~~ align.c:134:13: error: too many arguments to function 'expand_arr[ajob]'; expected 0, have 10 134 | expand_arr[ajob](seq1, seq2, len1, len2, | ^~~~~~~~~~ ~~~~ align.c: In function 'cdisplay': align.c:169:5: error: too many arguments to function 'display_arr[job & 15]'; expected 0, have 7 169 | display_arr[job & ALIGN_J_MASK](seq1, seq2, len1, len2, | ^~~~~~~~~~~ ~~~~ align.c: In function 'cexpand': align.c:188:5: error: too many arguments to function 'expand_arr[job & 15]'; expected 0, have 10 188 | expand_arr[job & ALIGN_J_MASK](seq1, seq2, len1, len2, | ^~~~~~~~~~ ~~~~ align_sv.c: In function 'align_sv': align_sv.c:339:9: warning: old-style function definition [-Wold-style-definition] 339 | FastInt align_sv(A,B,M,N,low,up,W,G,H,S,s1,s2,e1,e2) | ^~~~~~~~ align_sv.c: In function 'display_sv': align_sv.c:456:6: warning: old-style function definition [-Wold-style-definition] 456 | void display_sv(A,B,M,N,S,AP,BP) | ^~~~~~~~~~ sequence_formats.c: In function 'get_embl_format_seq': sequence_formats.c:729:29: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 729 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:738:33: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 738 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c: In function 'add_feat': sequence_formats.c:481:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 481 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:510:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 510 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: *** [/build/reproducible-path/staden-2.0.0+b11/./seq_utils/../global.mk:388: align.o] Error 1 make[2]: *** Waiting for unfinished jobs.... renz_utils.c: In function 'SetREnzColour': renz_utils.c:1049:35: warning: '__builtin___sprintf_chk' writing a terminating nul past the end of the destination [-Wformat-overflow=] 1049 | sprintf(colour, "#%02x%02x%02x", r, g, b); | ^ In file included from /usr/include/stdio.h:970, from renz_utils.c:3: In function 'sprintf', inlined from 'SetREnzColour' at renz_utils.c:1049:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 8 and 26 bytes into a destination of size 7 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/seq_utils' make[1]: *** [Makefile:174: seq_utils] Error 2 make[1]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11' dh_auto_build: error: make -j40 returned exit code 2 make: *** [debian/rules:12: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2507905 and its subdirectories Starting cleanup. All cleanup done. Mon Sep 15 08:40:10 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-FOYz7TtG, removing. /srv/reproducible-results/rbuild-debian/r-b-build.pbJy5wr1: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 08:40 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 08:38 b2 -rw------- 1 jenkins jenkins 3294 Sep 15 08:38 rbuildlog.XKHfqJY -rw-rw-r-- 1 jenkins jenkins 2185 Mar 13 2024 staden_2.0.0+b11-5.dsc /srv/reproducible-results/rbuild-debian/r-b-build.pbJy5wr1/b1: total 188 -rw-r--r-- 1 jenkins jenkins 190651 Sep 15 08:40 build.log /srv/reproducible-results/rbuild-debian/r-b-build.pbJy5wr1/b2: total 0 Mon Sep 15 08:40:10 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 20:38:54 -12 2025 I: pbuilder-time-stamp: 1757925534 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [staden_2.0.0+b11-5.dsc] I: copying [./staden_2.0.0+b11.orig.tar.gz] I: copying [./staden_2.0.0+b11-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./staden_2.0.0+b11-5.dsc: no acceptable signature found dpkg-source: info: extracting staden in staden-2.0.0+b11 dpkg-source: info: unpacking staden_2.0.0+b11.orig.tar.gz dpkg-source: info: unpacking staden_2.0.0+b11-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_help_menus_work.patch dpkg-source: info: applying fix_tcl_path.patch dpkg-source: info: applying fix_awk.patch dpkg-source: info: applying enable_setting_stadenroot.patch dpkg-source: info: applying include_xalloc.patch dpkg-source: info: applying use_mkstemp_instead_of_tmpnam.patch dpkg-source: info: applying fix_implicit_declaration.patch dpkg-source: info: applying autoconfig.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2507905/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ecefd6ca4ee64283bfe797f2ac7a02f8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2507905' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pbJy5wr1/pbuilderrc_KAk1 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pbJy5wr1/b1 --logfile b1/build.log staden_2.0.0+b11-5.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2507905/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libstaden-read-dev, itcl3-dev, itk3-dev, zlib1g-dev, libbz2-dev, liblzma-dev, tcl-dev, tk-dev, tklib, libpng-dev, libncurses-dev, iwidgets4, libcurl4-gnutls-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libstaden-read-dev; however: Package libstaden-read-dev is not installed. pbuilder-satisfydepends-dummy depends on itcl3-dev; however: Package itcl3-dev is not installed. pbuilder-satisfydepends-dummy depends on itk3-dev; however: Package itk3-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on tcl-dev; however: Package tcl-dev is not installed. pbuilder-satisfydepends-dummy depends on tk-dev; however: Package tk-dev is not installed. pbuilder-satisfydepends-dummy depends on tklib; however: Package tklib is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libncurses-dev; however: Package libncurses-dev is not installed. pbuilder-satisfydepends-dummy depends on iwidgets4; however: Package iwidgets4 is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev; however: Package libcurl4-gnutls-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} itcl3{a} itcl3-dev{a} itk3{a} itk3-dev{a} iwidgets4{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfontconfig1-dev{a} libfreetype-dev{a} libfreetype6{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhtscodecs-dev{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstaden-read-dev{a} libstaden-read14t64{a} libtasn1-6{a} libtasn1-6-dev{a} libtcl8.6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxft-dev{a} libxft2{a} libxml2-16{a} libxrender-dev{a} libxrender1{a} libxss-dev{a} libxss1{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} tcl{a} tcl-dev{a} tcl8.6{a} tcl8.6-dev{a} tk{a} tk-dev{a} tk8.6{a} tk8.6-dev{a} tklib{a} tzdata{a} uuid-dev{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libpng-tools libsasl2-modules libtasn1-doc lynx publicsuffix tcllib wget 0 packages upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 47.5 MB of archives. After unpacking 162 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 26 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 itcl3 amd64 3.4.4-3 [48.2 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 tcl8.6 amd64 8.6.17+dfsg-1 [121 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 tcl8.6-dev amd64 8.6.17+dfsg-1 [1029 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 tcl amd64 8.6.16 [4096 B] Get: 43 http://deb.debian.org/debian forky/main amd64 tcl-dev amd64 8.6.16 [6636 B] Get: 44 http://deb.debian.org/debian forky/main amd64 itcl3-dev amd64 3.4.4-3 [15.5 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 itk3 amd64 3.4.2-5 [26.4 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 x11proto-core-dev all 2024.1-1 [3312 B] Get: 64 http://deb.debian.org/debian forky/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libxext-dev amd64 2:1.3.4-1+b3 [104 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libxss-dev amd64 1:1.2.3-1+b3 [22.7 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libpng-dev amd64 1.6.50-1 [366 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libfreetype-dev amd64 2.13.3+dfsg-1 [622 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 uuid-dev amd64 2.41.1-2 [49.0 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libfontconfig-dev amd64 2.15.0-2.4 [426 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libfontconfig1-dev amd64 2.15.0-2.4 [269 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libxrender-dev amd64 1:0.9.12-1 [39.0 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libxft-dev amd64 2.3.6-1+b4 [73.2 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 tk8.6 amd64 8.6.17-1 [69.7 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 tk8.6-dev amd64 8.6.17-1 [792 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 tk amd64 8.6.16 [4136 B] Get: 87 http://deb.debian.org/debian forky/main amd64 tk-dev amd64 8.6.16 [3968 B] Get: 88 http://deb.debian.org/debian forky/main amd64 itk3-dev amd64 3.4.2-5 [5532 B] Get: 89 http://deb.debian.org/debian forky/main amd64 iwidgets4 all 4.1.1-4 [194 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 93 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.15.0-1 [385 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.23.1-1 [606 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.11.0-1 [34.0 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.11.0-1 [179 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls-dev amd64 8.15.0-1 [504 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 libhtscodecs-dev amd64 1.6.1-2 [3000 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 libstaden-read14t64 amd64 1.15.0-1.1+b2 [268 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 libstaden-read-dev amd64 1.15.0-1.1+b2 [347 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 tklib all 0.9-1 [1749 kB] Fetched 47.5 MB in 1s (36.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package sensible-utils. 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Selecting previously unselected package libstaden-read14t64:amd64. Preparing to unpack .../143-libstaden-read14t64_1.15.0-1.1+b2_amd64.deb ... Unpacking libstaden-read14t64:amd64 (1.15.0-1.1+b2) ... Selecting previously unselected package libstaden-read-dev. Preparing to unpack .../144-libstaden-read-dev_1.15.0-1.1+b2_amd64.deb ... Unpacking libstaden-read-dev (1.15.0-1.1+b2) ... Selecting previously unselected package tklib. Preparing to unpack .../145-tklib_0.9-1_all.deb ... Unpacking tklib (0.9-1) ... Setting up libhtscodecs2:amd64 (1.6.1-2) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 15 08:39:49 UTC 2025. Universal Time is now: Mon Sep 15 08:39:49 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libhtscodecs-dev:amd64 (1.6.1-2) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20240727.1) ... Setting up libunbound8:amd64 (1.23.1-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up libx11-data (2:1.8.12-1) ... Setting up uuid-dev:amd64 (2.41.1-2) ... Setting up libncurses6:amd64 (6.5+20250216-2) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:amd64 (3.5.2-1) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libnghttp3-dev:amd64 (1.8.0-1) ... Setting up liblzma-dev:amd64 (5.8.1-1.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up tcl8.6 (8.6.17+dfsg-1) ... Setting up libncurses-dev:amd64 (6.5+20250216-2) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-5) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up tcl8.6-dev:amd64 (8.6.17+dfsg-1) ... Setting up libpng-dev:amd64 (1.6.50-1) ... Setting up itcl3:amd64 (3.4.4-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libngtcp2-dev:amd64 (1.11.0-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up x11proto-core-dev (2024.1-1) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up tcl (8.6.16) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up itcl3-dev:amd64 (3.4.4-3) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.12-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libfreetype-dev:amd64 (2.13.3+dfsg-1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up itk3:amd64 (3.4.2-5) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up iwidgets4 (4.1.1-4) ... Setting up tcl-dev:amd64 (8.6.16) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b3) ... Setting up libxrender-dev:amd64 (1:0.9.12-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up tk8.6 (8.6.17-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libfontconfig-dev:amd64 (2.15.0-2.4) ... Setting up libcurl3t64-gnutls:amd64 (8.15.0-1) ... Setting up debhelper (13.26) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.11.0-1) ... Setting up libxss-dev:amd64 (1:1.2.3-1+b3) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up tk (8.6.16) ... Setting up libxft-dev:amd64 (2.3.6-1+b4) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libfontconfig1-dev:amd64 (2.15.0-2.4) ... Setting up libstaden-read14t64:amd64 (1.15.0-1.1+b2) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up tklib (0.9-1) ... Setting up tk8.6-dev:amd64 (8.6.17-1) ... Setting up itk3-dev:amd64 (3.4.2-5) ... Setting up libcurl4-gnutls-dev:amd64 (8.15.0-1) ... Setting up tk-dev:amd64 (8.6.16) ... Setting up libstaden-read-dev (1.15.0-1.1+b2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/staden-2.0.0+b11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../staden_2.0.0+b11-5_source.changes dpkg-buildpackage: info: source package staden dpkg-buildpackage: info: source version 2.0.0+b11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/staden-2.0.0+b11' make spotless || true make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11' make[2]: *** No rule to make target 'spotless'. Stop. make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11' rm -f config.log config.status rm -f Makefile shlib.conf staden_config.h system.mk find -name debian -prune -o -name .dir -exec rm '{}' ';' make[1]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:32: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:32: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/libcurl_check_config.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:32: the top level configure.in:33: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:33: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_zlib.m4:32: AX_LIB_ZLIB is expanded from... configure.in:33: the top level configure.in:34: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:34: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_lzma.m4:32: AX_LIB_LZMA is expanded from... configure.in:34: the top level configure.in:35: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:35: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_png.m4:34: AX_LIB_PNG is expanded from... configure.in:35: the top level configure.in:40: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:40: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_staden_io_lib.m4:35: AX_LIB_IO_LIB is expanded from... configure.in:40: the top level configure.in:43: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:43: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_curses.m4:37: AX_LIB_CURSES is expanded from... configure.in:43: the top level configure.in:46: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.in:46: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.in:46: the top level configure.in:93: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:93: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:43: TEA_PATH_TCLCONFIG is expanded from... configure.in:93: the top level configure.in:94: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:94: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:355: TEA_LOAD_TCLCONFIG is expanded from... configure.in:94: the top level configure.in:96: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:96: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:200: TEA_PATH_TKCONFIG is expanded from... configure.in:96: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_LINK' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_RUN' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2995: AC_TRY_RUN is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... ac_stubs/tcl.m4:2704: TEA_TCL_EARLY_FLAG is expanded from... ac_stubs/tcl.m4:2717: TEA_TCL_EARLY_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:102: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:102: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... ac_stubs/tcl.m4:2751: TEA_TCL_64BIT_FLAGS is expanded from... ac_stubs/tcl.m4:1040: TEA_CONFIG_CFLAGS is expanded from... configure.in:102: the top level configure.in:148: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:148: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_tklib.m4:27: AX_LIB_TKLIB is expanded from... configure.in:148: the top level configure.in:149: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:149: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_iwidgets.m4:28: AX_LIB_IWIDGETS is expanded from... configure.in:149: the top level configure.in:150: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:150: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itcl.m4:26: AX_LIB_ITCL is expanded from... configure.in:150: the top level configure.in:151: warning: The macro 'AC_HELP_STRING' is obsolete. configure.in:151: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ac_stubs/ax_lib_itk.m4:26: AX_LIB_ITK is expanded from... configure.in:151: the top level autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/staden-2.0.0+b11' dh_auto_configure -- --enable-64bit \ --with-itcl=/usr/lib/tcltk/x86_64-linux-gnu \ --with-itk=/usr/lib/tcltk/x86_64-linux-gnu ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-64bit --with-itcl=/usr/lib/tcltk/x86_64-linux-gnu --with-itk=/usr/lib/tcltk/x86_64-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for gawk... no checking for mawk... mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 8.15.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for inflateEnd in -lz... yes checking for zlib.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for lzma.h... yes checking for png_create_write_struct in -lpng... yes checking for png.h... yes checking for staden-io_lib-config... no checking for io_lib-config... /usr/bin/io_lib-config checking if io_lib version >= 1.12.5... yes checking for io_lib/Read.h... yes checking for mvwprintw in -lncurses... yes checking for ncurses.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/wait.h that is POSIX.1 compatible... yes checking for fcntl.h... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking for pwd.h... yes checking for -Wdate-time -D_FORTIFY_SOURCE=2 option for large files... none needed checking for declarations of fseeko and ftello... yes checking for library containing cos... -lm checking for popen... yes checking how to run the C preprocessor... gcc -E checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking whether byte ordering is bigendian... no checking for inline... inline checking for correct TEA configuration... ok (TEA 3.9) configure: configuring staden 2.0.0b11-2016 checking for Tcl configuration... found /usr/lib/tclConfig.sh checking for existence of /usr/lib/tclConfig.sh... loading checking platform... unix checking for Tk configuration... found /usr/lib/tkConfig.sh checking for existence of /usr/lib/tkConfig.sh... loading checking for ranlib... ranlib checking for egrep -e... (cached) /usr/bin/grep -E checking if 64bit support is requested... yes checking if 64bit Sparc VIS support is requested... no checking if compiler supports visibility "hidden"... yes checking if rpath support is requested... yes checking system version... Linux-6.12.43+deb13-amd64 checking for ar... ar checking if compiler accepts -m64 flag... yes checking for SEH support in compiler... no checking for EXCEPTION_DISPOSITION support in include files... no checking for winnt.h that ignores VOID define... no checking for cast to union support... yes checking for required early compiler flags... none checking for 64-bit integer type... using long checking for tclsh... /usr/bin/tclsh8.6 checking for Tcl public headers... /usr/include/tcl8.6 checking for Tcl private include files... Using srcdir found in tclConfig.sh: /usr/include/tcl8.6/tcl-private checking for Tk public headers... /usr/include/tcl8.6 checking for Tk private include files... Using srcdir found in tkConfig.sh: /usr/include/tcl8.6/tk-private checking tklib directory... yes (/usr/share/tcltk/tklib0.9) checking iwidgets directory... yes (/usr/share/tcltk/iwidgets4.1.0) checking itcl directory... vers=/3004000/ yes (/usr/lib/tcltk/x86_64-linux-gnu/itcl3.4) checking itk directory... yes (/usr/lib/tcltk/x86_64-linux-gnu/itk3.4) configure: creating ./config.status config.status: creating Makefile config.status: creating system.mk config.status: creating shlib.conf config.status: creating gap5/gap5 config.status: creating gap5/tg_view config.status: creating gap5/tg_index config.status: creating gap5/gap5_cmd config.status: creating gap4/gap4 config.status: creating copy_reads/copy_reads config.status: creating trev/trev config.status: creating prefinish/prefinish config.status: creating pregap4/pregap4 config.status: creating spin/spin config.status: creating staden_config.h ---------------------------------------------------------------------- External packages used: curl: via /usr/bin/curl-config zlib: DIR (system) curses: DIR (system) liblzma: DIR io_lib: via /usr/bin/io_lib-config Tcl: via /usr/lib/tclConfig.sh Tk: via /usr/lib/tkConfig.sh tklib: /usr/share/tcltk/tklib0.9 Iwidgets: /usr/share/tcltk/iwidgets4.1.0 Itcl: /usr/lib/tcltk/x86_64-linux-gnu/itcl3.4 Itk: /usr/lib/tcltk/x86_64-linux-gnu/itk3.4 ---------------------------------------------------------------------- make[1]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11' dh_auto_build make -j40 make[1]: Entering directory '/build/reproducible-path/staden-2.0.0+b11' cd Misc && make -f /build/reproducible-path/staden-2.0.0+b11/./Misc/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./Misc SUBDIR=Misc all cd trev && make -f /build/reproducible-path/staden-2.0.0+b11/./trev/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./trev SUBDIR=trev all cd primer3 && make -f /build/reproducible-path/staden-2.0.0+b11/./primer3/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./primer3 SUBDIR=primer3 all cd primer3/src && make -f /build/reproducible-path/staden-2.0.0+b11/./primer3/src/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./primer3/src SUBDIR=primer3/src all cd pregap4 && make -f /build/reproducible-path/staden-2.0.0+b11/./pregap4/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./pregap4 SUBDIR=pregap4 all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/Misc' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd spin_emboss && make -f /build/reproducible-path/staden-2.0.0+b11/./spin_emboss/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./spin_emboss SUBDIR=spin_emboss all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/trev' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd scripts && make -f /build/reproducible-path/staden-2.0.0+b11/./scripts/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./scripts SUBDIR=scripts all cd data && make -f /build/reproducible-path/staden-2.0.0+b11/./data/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./data SUBDIR=data all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/primer3' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/primer3/src' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/pregap4' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/spin_emboss' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/scripts' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/data' make[2]: warning: -j40 forced in submake: resetting jobserver mode. /build/reproducible-path/staden-2.0.0+b11/./pregap4/Makefile:9: warning: overriding recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./pregap4/../global.mk:233: warning: ignoring old recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./spin_emboss/Makefile:9: warning: overriding recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./spin_emboss/../global.mk:233: warning: ignoring old recipe for target 'clean' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o crash.o -c crash.c make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/trev' /build/reproducible-path/staden-2.0.0+b11/./scripts/Makefile:9: warning: overriding recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./scripts/../global.mk:233: warning: ignoring old recipe for target 'clean' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o date.o -c date.c /build/reproducible-path/staden-2.0.0+b11/./data/Makefile:9: warning: overriding recipe for target 'clean' /build/reproducible-path/staden-2.0.0+b11/./data/../global.mk:233: warning: ignoring old recipe for target 'clean' make[2]: Nothing to be done for 'all'. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o primer3_lib.o -c primer3_lib.c make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/primer3' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o filenames.o -c filenames.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o primer3_release.o -c primer3_release.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o oligotm.o -c oligotm.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o files.o -c files.c Nothing to build for Pregap4. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -o dpal_primer.o -c dpal.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o find.o -c find.c Nothing to build for spin_emboss. make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/pregap4' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/spin_emboss' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o format_output.o -c format_output.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o shell.o -c shell.c Nothing to build for data. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o boulder_input.o -c boulder_input.c make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/data' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o strings.o -c strings.c Nothing to build for scripts. mkdir -p /build/reproducible-path/staden-2.0.0+b11/lib 2>/dev/null make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/scripts' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o usleep.o -c usleep.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o primer3_main.o -c primer3_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o error.o -c error.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o xerror.o -c xerror.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o xalloc.o -c xalloc.c touch /build/reproducible-path/staden-2.0.0+b11/lib/.dir gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o vlen.o -c vlen.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o FtoC.o -c FtoC.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o getfile.o -c getfile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o bitmap.o -c bitmap.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o array.o -c array.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o locks.o -c locks.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o array_arith.o -c array_arith.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o parse_db.o -c parse_db.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o dstring.o -c dstring.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o string_alloc.o -c string_alloc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o strtol64.o -c strtol64.c oligotm.c: In function 'oligotm': oligotm.c:297:1: warning: old-style function definition [-Wold-style-definition] 297 | oligotm(s, DNA_nM, K_mM, Mg_mM, dNTP_mM) | ^~~~~~~ oligotm.c: In function 'oligodg': oligotm.c:437:1: warning: old-style function definition [-Wold-style-definition] 437 | oligodg(s) | ^~~~~~~ oligotm.c: In function 'end_oligodg': oligotm.c:489:8: warning: old-style function definition [-Wold-style-definition] 489 | double end_oligodg(s, len) | ^~~~~~~~~~~ oligotm.c: In function 'seqtm': oligotm.c:497:8: warning: old-style function definition [-Wold-style-definition] 497 | double seqtm(seq, dna_conc, salt_conc, Mg_conc, dNTP_conc, nn_max_len) | ^~~~~ oligotm.c: In function 'long_seq_tm': oligotm.c:514:1: warning: old-style function definition [-Wold-style-definition] 514 | long_seq_tm(s, start, len, salt_conc) | ^~~~~~~~~~~ dpal.c: In function 'dpal_set_default_nt_args': dpal.c:79:1: warning: old-style function definition [-Wold-style-definition] 79 | dpal_set_default_nt_args(a) | ^~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function 'dpal_set_h_nt_matrix': dpal.c:113:1: warning: old-style function definition [-Wold-style-definition] 113 | dpal_set_h_nt_matrix(a) | ^~~~~~~~~~~~~~~~~~~~ dpal.c: In function 'dpal_set_ambiguity_code_matrix': dpal.c:145:1: warning: old-style function definition [-Wold-style-definition] 145 | dpal_set_ambiguity_code_matrix(a) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function 'dpal': dpal.c:211:1: warning: old-style function definition [-Wold-style-definition] 211 | dpal(X, Y, in, out) | ^~~~ dpal.c: In function '_dpal_generic': dpal.c:304:1: warning: old-style function definition [-Wold-style-definition] 304 | _dpal_generic(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~ dpal.c: In function '_dpal_long_nopath_generic': dpal.c:559:1: warning: old-style function definition [-Wold-style-definition] 559 | _dpal_long_nopath_generic(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function '_dpal_long_nopath_maxgap1_local': dpal.c:716:1: warning: old-style function definition [-Wold-style-definition] 716 | _dpal_long_nopath_maxgap1_local(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function '_dpal_long_nopath_maxgap1_global_end': dpal.c:798:1: warning: old-style function definition [-Wold-style-definition] 798 | _dpal_long_nopath_maxgap1_global_end(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dpal.c: In function 'print_align': dpal.c:898:1: warning: old-style function definition [-Wold-style-definition] 898 | print_align(X,Y,P,I,J, dargs) | ^~~~~~~~~~~ dpal.c: In function 'illegal_char': dpal.c:988:1: warning: old-style function definition [-Wold-style-definition] 988 | illegal_char(X, ssm, out) | ^~~~~~~~~~~~ dpal.c: In function '_dpal_long_nopath_maxgap1_local_end': dpal.c:1003:1: warning: old-style function definition [-Wold-style-definition] 1003 | _dpal_long_nopath_maxgap1_local_end(X, Y, xlen, ylen, in, out) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'sig_handler': primer3_main.c:158:1: warning: old-style function definition [-Wold-style-definition] 158 | sig_handler(signal) | ^~~~~~~~~~~ primer3_main.c: In function 'boulder_print_pairs': primer3_main.c:180:1: warning: old-style function definition [-Wold-style-definition] 180 | boulder_print_pairs(prog_args, pa, sa, best_pairs) | ^~~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'boulder_print_oligos': primer3_main.c:373:1: warning: old-style function definition [-Wold-style-definition] 373 | boulder_print_oligos(pa, sa, n, l, state) | ^~~~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'print_all_explain': primer3_main.c:457:1: warning: old-style function definition [-Wold-style-definition] 457 | print_all_explain(pa, sa) | ^~~~~~~~~~~~~~~~~ primer3_main.c: In function 'print_explain': primer3_main.c:486:1: warning: old-style function definition [-Wold-style-definition] 486 | print_explain(stat, l) | ^~~~~~~~~~~~~ format_output.c: In function 'print_summary': primer3_main.c: In function 'pr_safe_malloc': primer3_main.c:520:5: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 520 | write(2, pr_program_name, pr_program_name_len), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro 'OOM_ERROR' 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ primer3_main.c:521:5: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 521 | write(2, OOM_MESSAGE, OOM_MESSAGE_LEN), \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ primer3_main.c:528:20: note: in expansion of macro 'OOM_ERROR' 528 | if (NULL == r) OOM_ERROR; | ^~~~~~~~~ format_output.c:202:1: warning: old-style function definition [-Wold-style-definition] 202 | print_summary(f, pa, sa, best_pairs, num) | ^~~~~~~~~~~~~ format_output.c: In function 'print_oligo_header': format_output.c:239:1: warning: old-style function definition [-Wold-style-definition] 239 | print_oligo_header(f, s, print_lib_sim) | ^~~~~~~~~~~~~~~~~~ format_output.c: In function 'print_oligo': format_output.c:250:1: warning: old-style function definition [-Wold-style-definition] 250 | print_oligo(f, title, sa, o, dir, pa, seqlib, print_lib_sim) | ^~~~~~~~~~~ format_output.c: In function 'print_pair_array': format_output.c:283:1: warning: old-style function definition [-Wold-style-definition] 283 | print_pair_array(f, title, num, array, pa, sa) | ^~~~~~~~~~~~~~~~ format_output.c: In function 'print_seq': format_output.c:311:1: warning: old-style function definition [-Wold-style-definition] 311 | print_seq(f, pa, sa, h, best_pairs, num) | ^~~~~~~~~ format_output.c: In function 'print_seq_lines': format_output.c:453:1: warning: old-style function definition [-Wold-style-definition] 453 | print_seq_lines(f, s, n, seq_size, line_size, something_found, pa) | ^~~~~~~~~~~~~~~ format_output.c: In function 'print_pair_info': format_output.c:481:1: warning: old-style function definition [-Wold-style-definition] 481 | print_pair_info(f, p, pa) | ^~~~~~~~~~~~~~~ format_output.c: In function 'print_rest': format_output.c:499:1: warning: old-style function definition [-Wold-style-definition] 499 | print_rest(f, pa, sa, best_pairs) | ^~~~~~~~~~ format_output.c: In function 'print_explain': format_output.c:531:1: warning: old-style function definition [-Wold-style-definition] 531 | print_explain(f, pa, sa, print_lib_sim) | ^~~~~~~~~~~~~ format_output.c: In function 'print_stat_line': format_output.c:613:1: warning: old-style function definition [-Wold-style-definition] 613 | print_stat_line(f, t, s, print_lib_sim) | ^~~~~~~~~~~~~~~ format_output.c: In function 'lib_sim_specified': format_output.c:641:1: warning: old-style function definition [-Wold-style-definition] 641 | lib_sim_specified(pa) | ^~~~~~~~~~~~~~~~~ format_output.c: In function 'print_oligo_summary': format_output.c:648:1: warning: old-style function definition [-Wold-style-definition] 648 | print_oligo_summary(f, pa, sa, h, l, num) | ^~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'adjust_base_index_interval_list': boulder_input.c:518:1: warning: old-style function definition [-Wold-style-definition] 518 | adjust_base_index_interval_list(intervals, num, first_index) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'read_line': boulder_input.c:532:1: warning: old-style function definition [-Wold-style-definition] 532 | read_line(perr, file) | ^~~~~~~~~ boulder_input.c: In function 'tag_syntax_error': boulder_input.c:579:1: warning: old-style function definition [-Wold-style-definition] 579 | tag_syntax_error(perr, tag_name, datum, err) | ^~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_align_score': boulder_input.c:591:1: warning: old-style function definition [-Wold-style-definition] 591 | parse_align_score(perr, tag_name, datum, out, err) | ^~~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_double': boulder_input.c:611:1: warning: old-style function definition [-Wold-style-definition] 611 | parse_double(perr, tag_name, datum, out, err) | ^~~~~~~~~~~~ boulder_input.c: In function 'parse_int': boulder_input.c:636:1: warning: old-style function definition [-Wold-style-definition] 636 | parse_int(perr, tag_name, datum, out, err) | ^~~~~~~~~ boulder_input.c: In function 'parse_interval_list': boulder_input.c:726:1: warning: old-style function definition [-Wold-style-definition] 726 | parse_interval_list(perr, tag_name, datum, count, interval_array, err) | ^~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_product_size': boulder_input.c:752:1: warning: old-style function definition [-Wold-style-definition] 752 | parse_product_size(perr, tag_name, in, pa, err) | ^~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'read_seq_lib': boulder_input.c:800:1: warning: old-style function definition [-Wold-style-definition] 800 | read_seq_lib(perr, lib, filename, errfrag) | ^~~~~~~~~~~~ boulder_input.c: In function 'upcase_and_check_char': boulder_input.c:917:14: warning: old-style function definition [-Wold-style-definition] 917 | static short upcase_and_check_char(s) | ^~~~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_seq_name': boulder_input.c:963:1: warning: old-style function definition [-Wold-style-definition] 963 | parse_seq_name(s) | ^~~~~~~~~~~~~~ boulder_input.c: In function 'reverse_complement_seq_lib': boulder_input.c:983:1: warning: old-style function definition [-Wold-style-definition] 983 | reverse_complement_seq_lib(perr, lib) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ boulder_input.c: In function 'parse_seq_quality': boulder_input.c:1019:1: warning: old-style function definition [-Wold-style-definition] 1019 | parse_seq_quality(s, num) | ^~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'add_must_use_warnings': primer3_lib.c:854:1: warning: old-style function definition [-Wold-style-definition] 854 | add_must_use_warnings(state, sa, text, stats) | ^~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'oligo_pair_seen': primer3_lib.c:894:1: warning: old-style function definition [-Wold-style-definition] 894 | oligo_pair_seen(pair, retpair) | ^~~~~~~~~~~~~~~ primer3_lib.c: In function 'make_lists': primer3_lib.c:932:1: warning: old-style function definition [-Wold-style-definition] 932 | make_lists(pa, sa, state) | ^~~~~~~~~~ primer3_lib.c: In function 'make_internal_oligos_list': primer3_lib.c:1128:1: warning: old-style function definition [-Wold-style-definition] 1128 | make_internal_oligos_list(pa, sa, state) | ^~~~~~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'oligo_param': primer3_lib.c:1204:1: warning: old-style function definition [-Wold-style-definition] 1204 | oligo_param(pa, h, l, state, sa, stats) | ^~~~~~~~~~~ primer3_lib.c: In function 'check_sequence_quality': primer3_lib.c:1426:1: warning: old-style function definition [-Wold-style-definition] 1426 | check_sequence_quality(pa, h, l, sa, j, k, r_min_q, r_min_q_end) | ^~~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'gc_and_n_content': primer3_lib.c:1488:1: warning: old-style function definition [-Wold-style-definition] 1488 | gc_and_n_content(start, len, sequence, h) | ^~~~~~~~~~~~~~~~ primer3_lib.c: In function 'oligo_overlaps_interval': primer3_lib.c:1511:1: warning: old-style function definition [-Wold-style-definition] 1511 | oligo_overlaps_interval(start, len, intervals, num_intervals) | ^~~~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'p_obj_fn': primer3_lib.c:1527:1: warning: old-style function definition [-Wold-style-definition] 1527 | p_obj_fn(pa, h, j) | ^~~~~~~~ primer3_lib.c: In function 'print_list': primer3_lib.c:1617:1: warning: old-style function definition [-Wold-style-definition] 1617 | print_list(sa, pa, state) | ^~~~~~~~~~ primer3_lib.c: In function 'create_and_print_file': primer3_lib.c:1646:1: warning: old-style function definition [-Wold-style-definition] 1646 | create_and_print_file(sa, n, oligo_arr, o_type, | ^~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'print_list_header': primer3_lib.c:1673:1: warning: old-style function definition [-Wold-style-definition] 1673 | print_list_header(fh, type, first_base_index, print_lib_sim) | ^~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'print_oligo': primer3_lib.c:1695:1: warning: old-style function definition [-Wold-style-definition] 1695 | print_oligo(fh, sa, index, h, type, first_base_index, print_lib_sim) | ^~~~~~~~~~~ primer3_lib.c: In function 'choose_pair': primer3_lib.c:1727:1: warning: old-style function definition [-Wold-style-definition] 1727 | choose_pair(pa, sa, int_num, p, state) | ^~~~~~~~~~~ primer3_lib.c: In function 'choose_internal_oligo': primer3_lib.c:1836:1: warning: old-style function definition [-Wold-style-definition] 1836 | choose_internal_oligo(left, right, nm, sa, pa, state) | ^~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'primer_rec_comp': primer3_lib.c:1872:1: warning: old-style function definition [-Wold-style-definition] 1872 | primer_rec_comp(x1, x2) | ^~~~~~~~~~~~~~~ primer3_lib.c: In function 'primer_pair_comp': primer3_lib.c:1894:1: warning: old-style function definition [-Wold-style-definition] 1894 | primer_pair_comp(x1, x2) | ^~~~~~~~~~~~~~~~ primer3_lib.c: In function 'pair_param': primer3_lib.c:1940:1: warning: old-style function definition [-Wold-style-definition] 1940 | pair_param(pa, sa, m, n, int_num, h, state) | ^~~~~~~~~~ primer3_lib.c: In function 'compute_position_penalty': primer3_lib.c:2080:1: warning: old-style function definition [-Wold-style-definition] 2080 | compute_position_penalty(pa, sa, h, o_type) | ^~~~~~~~~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'pair_spans_target': primer3_lib.c:2136:1: warning: old-style function definition [-Wold-style-definition] 2136 | pair_spans_target(pair, sa) | ^~~~~~~~~~~~~~~~~ primer3_lib.c: In function 'obj_fn': primer3_lib.c:2160:1: warning: old-style function definition [-Wold-style-definition] 2160 | obj_fn(pa, h) | ^~~~~~ primer3_lib.c: In function 'check_intervals': primer3_lib.c:2616:1: warning: old-style function definition [-Wold-style-definition] 2616 | check_intervals(state, tag_name, num_intervals, intervals, seq_len, sa) | ^~~~~~~~~~~~~~~ primer3_lib.c: In function 'align': primer3_lib.c:2655:1: warning: old-style function definition [-Wold-style-definition] 2655 | align(state, s1, s2, a) | ^~~~~ primer3_lib.c: In function 'set_dpal_args': primer3_lib.c:2669:1: warning: old-style function definition [-Wold-style-definition] 2669 | set_dpal_args(a) | ^~~~~~~~~~~~~ primer3_lib.c: In function 'oligo_compl': primer3_lib.c:2704:1: warning: old-style function definition [-Wold-style-definition] 2704 | oligo_compl(h, ha, sa, l, state) | ^~~~~~~~~~~ primer3_lib.c: In function 'oligo_mispriming': primer3_lib.c:2768:1: warning: old-style function definition [-Wold-style-definition] 2768 | oligo_mispriming(h, ha, sa, l, state) | ^~~~~~~~~~~~~~~~ primer3_lib.c: In function 'pair_repeat_sim': primer3_lib.c:2847:1: warning: old-style function definition [-Wold-style-definition] 2847 | pair_repeat_sim(h, pa) | ^~~~~~~~~~~~~~~ primer3_lib.c: In function 'free_repeat_sim_score': primer3_lib.c:2934:1: warning: old-style function definition [-Wold-style-definition] 2934 | free_repeat_sim_score(state) | ^~~~~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'boulder_print_oligos': primer3_main.c:416:32: warning: '%d' directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 416 | else sprintf(suffix, "_%d", i); | ^~ primer3_main.c:416:30: note: directive argument in the range [1, 2147483647] 416 | else sprintf(suffix, "_%d", i); | ^~~~~ In file included from /usr/include/stdio.h:970, from primer3_main.c:7: In function 'sprintf', inlined from 'boulder_print_oligos' at primer3_main.c:416:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ parse_db.c: In function 'parse_entry': parse_db.c:234:66: warning: '%s' directive writing up to 8191 bytes into a region of size 8162 [-Wformat-overflow=] 234 | sprintf(buf, "Warning - unknown identifier \"%s\"\n",word); | ^~ ~~~~ In file included from /usr/include/stdio.h:970, from parse_db.c:19: In function 'sprintf', inlined from 'parse_entry' at parse_db.c:234:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 33 and 8224 bytes into a destination of size 8192 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ primer3_main.c: In function 'main': primer3_main.c:234:32: warning: '%d' directive writing between 1 and 10 bytes into a region of size 2 [-Wformat-overflow=] 234 | else sprintf(suffix, "_%d", i); | ^~ In function 'boulder_print_pairs', inlined from 'main' at primer3_main.c:109:3: primer3_main.c:234:30: note: directive argument in the range [1, 2147483646] 234 | else sprintf(suffix, "_%d", i); | ^~~~~ In function 'sprintf', inlined from 'boulder_print_pairs' at primer3_main.c:234:7, inlined from 'main' at primer3_main.c:109:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 3 and 12 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libmisc.so crash.o date.o filenames.o files.o find.o shell.o strings.o usleep.o error.o xerror.o xalloc.o vlen.o FtoC.o getfile.o bitmap.o array.o locks.o array_arith.o parse_db.o dstring.o string_alloc.o strtol64.o -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/Misc' cd tk_utils && make -f /build/reproducible-path/staden-2.0.0+b11/./tk_utils/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./tk_utils SUBDIR=tk_utils all cd text_utils && make -f /build/reproducible-path/staden-2.0.0+b11/./text_utils/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./text_utils SUBDIR=text_utils all cd abi && make -f /build/reproducible-path/staden-2.0.0+b11/./abi/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./abi SUBDIR=abi all cd alf && make -f /build/reproducible-path/staden-2.0.0+b11/./alf/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./alf SUBDIR=alf all cd g && make -f /build/reproducible-path/staden-2.0.0+b11/./g/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./g SUBDIR=g all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/tk_utils' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd eba && make -f /build/reproducible-path/staden-2.0.0+b11/./eba/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./eba SUBDIR=eba all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/text_utils' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd init_exp && make -f /build/reproducible-path/staden-2.0.0+b11/./init_exp/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./init_exp SUBDIR=init_exp all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/abi' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd get_scf_field && make -f /build/reproducible-path/staden-2.0.0+b11/./get_scf_field/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./get_scf_field SUBDIR=get_scf_field all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/alf' make[2]: warning: -j40 forced in submake: resetting jobserver mode. cd hetins && make -f /build/reproducible-path/staden-2.0.0+b11/./hetins/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./hetins SUBDIR=hetins all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/g' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/eba' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/init_exp' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/get_scf_field' make[2]: warning: -j40 forced in submake: resetting jobserver mode. make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/hetins' make[2]: warning: -j40 forced in submake: resetting jobserver mode. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o text_output_stubs.o -c text_output_stubs.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o abiIO.o -c abiIO.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./alf -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o alfsplit.o -c alfsplit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o text_output_stubs2.o -c text_output_stubs2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o cli_arg.o -c cli_arg.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o getABISampleName.o -c getABISampleName.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXkeylist.o -c tclXkeylist.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o getABIcomment.o -c getABIcomment.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./eba -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o qual.o -c qual.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tclXutil.o -c tclXutil.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-files.o -c g-files.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o getABIdate.o -c getABIdate.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./get_scf_field -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o get_scf_field.o -c get_scf_field.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_utils.o -c tcl_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./abi -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o getABIfield.o -c getABIfield.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./eba -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o conf.o -c conf.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./hetins -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o hetins.o -c hetins.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./init_exp -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/usr/include -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -o init_exp.o -c init_exp.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-db.o -c g-db.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_debug.o -c tcl_debug.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-struct.o -c g-struct.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o misc.o -c misc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o freetree.o -c freetree.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o init.o -c init.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-error.o -c g-error.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o text_output.o -c text_output.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-io.o -c g-io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRaster.o -c tkRaster.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-connect.o -c g-connect.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o g-request.o -c g-request.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkRasterBuiltIn.o -c tkRasterBuiltIn.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o sheet.o -c sheet.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet.o -c tkSheet.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkSheet_common.o -c tkSheet_common.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o trace_print.o -c trace_print.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o postscript.o -c postscript.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o split.o -c split.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTrace.o -c tkTrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceComp.o -c tkTraceComp.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceIO.o -c tkTraceIO.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tkTraceDisp.o -c tkTraceDisp.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o capture.o -c capture.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o canvas_box.o -c canvas_box.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o ruler_tick.o -c ruler_tick.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o restriction_enzyme_map.o -c restriction_enzyme_map.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o element_canvas.o -c element_canvas.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container.o -c container.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o container_ruler.o -c container_ruler.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -o tcl_io_lib.o -c tcl_io_lib.c alfsplit.c: In function 'main': tclXkeylist.c: In function 'ValidateKey': tclXkeylist.c:216:1: warning: old-style function definition [-Wold-style-definition] 216 | ValidateKey (interp, key, keyLen, isPath) | ^~~~~~~~~~~ tclXkeylist.c: In function 'FreeKeyedListData': tclXkeylist.c:286:1: warning: old-style function definition [-Wold-style-definition] 286 | FreeKeyedListData (keylIntPtr) | ^~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'EnsureKeyedListSpace': tclXkeylist.c:312:1: warning: old-style function definition [-Wold-style-definition] 312 | EnsureKeyedListSpace (keylIntPtr, newNumEntries) | ^~~~~~~~~~~~~~~~~~~~ alfsplit.c:347:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 347 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'DeleteKeyedListEntry': tclXkeylist.c:345:1: warning: old-style function definition [-Wold-style-definition] 345 | DeleteKeyedListEntry (keylIntPtr, entryIdx) | ^~~~~~~~~~~~~~~~~~~~ alfsplit.c:363:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 363 | fread (buf,512,1,inData) ; | ^~~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'FindKeyedListEntry': tclXkeylist.c:377:1: warning: old-style function definition [-Wold-style-definition] 377 | FindKeyedListEntry (keylIntPtr, key, keyLenPtr, nextSubKeyPtr) | ^~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'ObjToKeyedListEntry': tclXkeylist.c:433:1: warning: old-style function definition [-Wold-style-definition] 433 | ObjToKeyedListEntry (interp, objPtr, entryPtr) | ^~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'FreeKeyedListInternalRep': tclXkeylist.c:483:1: warning: old-style function definition [-Wold-style-definition] 483 | FreeKeyedListInternalRep (keylPtr) | ^~~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'DupKeyedListInternalRep': tclXkeylist.c:499:1: warning: old-style function definition [-Wold-style-definition] 499 | DupKeyedListInternalRep (srcPtr, copyPtr) | ^~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'SetKeyedListFromAny': alfsplit.c: In function 'readIndexEntry': alfsplit.c:129:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 129 | fread (ent->label,40,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ alfsplit.c:135:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fread (junk,70,1,fil) ; | ^~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c:540:1: warning: old-style function definition [-Wold-style-definition] 540 | SetKeyedListFromAny (interp, objPtr) | ^~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'UpdateStringOfKeyedList': tclXkeylist.c:586:1: warning: old-style function definition [-Wold-style-definition] 586 | UpdateStringOfKeyedList (keylPtr) | ^~~~~~~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'TclX_KeylgetObjCmd': tclXkeylist.c:949:1: warning: old-style function definition [-Wold-style-definition] 949 | TclX_KeylgetObjCmd (clientData, interp, objc, objv) | ^~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'TclX_KeylsetObjCmd': tclXkeylist.c:1030:1: warning: old-style function definition [-Wold-style-definition] 1030 | TclX_KeylsetObjCmd (clientData, interp, objc, objv) | ^~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'TclX_KeyldelObjCmd': tclXkeylist.c:1088:1: warning: old-style function definition [-Wold-style-definition] 1088 | TclX_KeyldelObjCmd (clientData, interp, objc, objv) | ^~~~~~~~~~~~~~~~~~ tclXkeylist.c: In function 'TclX_KeylkeysObjCmd': tclXkeylist.c:1151:1: warning: old-style function definition [-Wold-style-definition] 1151 | TclX_KeylkeysObjCmd (clientData, interp, objc, objv) | ^~~~~~~~~~~~~~~~~~~ capture.c: In function 'tcl_capture': capture.c:53:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | read(fd, buf, statbuf.st_size); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tkRasterBuiltIn.c: In function 'RasterBuiltInInit': tkRasterBuiltIn.c:227:5: warning: old-style function definition [-Wold-style-definition] 227 | int RasterBuiltInInit (interp) | ^~~~~~~~~~~~~~~~~ alfsplit.c: In function 'main': alfsplit.c:312:29: warning: '%s' directive writing up to 2559 bytes into a region of size 25 [-Wformat-overflow=] 312 | sprintf (fname,"%sALF",name[i]) ; | ^~ In file included from /usr/include/stdio.h:970, from alfsplit.c:30: In function 'sprintf', inlined from 'main' at alfsplit.c:312:6: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 4 and 2563 bytes into a destination of size 25 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o get_scf_field get_scf_field.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABISampleName abiIO.o getABISampleName.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIcomment abiIO.o getABIcomment.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libtext_utils.so text_output_stubs.o text_output_stubs2.o -lmisc gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIdate abiIO.o getABIdate.o -lmisc -lm gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o init_exp init_exp.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm tkRaster.c: In function 'RasterAddPrimitive': tkRaster.c:541:5: warning: old-style function definition [-Wold-style-definition] 541 | int RasterAddPrimitive (interp, primitivename, drawproc, initproc, freeproc) | ^~~~~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterWidgetCmd': tkRaster.c:586:1: warning: old-style function definition [-Wold-style-definition] 586 | RasterWidgetCmd(clientData, interp, argc, argv) | ^~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterDraw': tkRaster.c:1247:1: warning: old-style function definition [-Wold-style-definition] 1247 | RasterDraw (interp, RasterPtr, implemPtr, argc, argv) | ^~~~~~~~~~ tkRaster.c: In function 'ConfigureRaster': tkRaster.c:1345:1: warning: old-style function definition [-Wold-style-definition] 1345 | ConfigureRaster(interp, RasterPtr, argc, argv, flags) | ^~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterEventProc': tkRaster.c:1504:1: warning: old-style function definition [-Wold-style-definition] 1504 | RasterEventProc(clientData, eventPtr) | ^~~~~~~~~~~~~~~ tkRaster.c: In function 'arrangeDisplay': tkRaster.c:2003:1: warning: old-style function definition [-Wold-style-definition] 2003 | arrangeDisplay (RasterPtr, x0, y0, x1, y1, type) | ^~~~~~~~~~~~~~ tkRaster.c: In function 'arrangeExpose': tkRaster.c:2045:1: warning: old-style function definition [-Wold-style-definition] 2045 | arrangeExpose (RasterPtr, x0, y0, x1, y1) | ^~~~~~~~~~~~~ tkRaster.c: In function 'ConfigDrawEnv': tkRaster.c:2159:12: warning: old-style function definition [-Wold-style-definition] 2159 | static int ConfigDrawEnv (interp, RasterPtr, drawEnv, argc, argv) | ^~~~~~~~~~~~~ tkRaster.c: In function 'DrawEnvIndex': tkRaster.c:2250:5: warning: old-style function definition [-Wold-style-definition] 2250 | int DrawEnvIndex (interp, rasterptr, drawenvno, drawenvptrptr) | ^~~~~~~~~~~~ In file included from tkRaster.c:45: tkRaster.c:2266:62: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2266 | entryPtr = Tcl_FindHashEntry (&(RasterPtr->drawEnvTable), (char*)drawenvno); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro 'Tcl_FindHashEntry' 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ tkRaster.c: In function 'GetDrawEnv': tkRaster.c:2277:6: warning: old-style function definition [-Wold-style-definition] 2277 | void GetDrawEnv (rasterptr, drawenvptr) | ^~~~~~~~~~ tkRaster.c: In function 'SetDrawEnv': tkRaster.c:2289:5: warning: old-style function definition [-Wold-style-definition] 2289 | int SetDrawEnv (interp, rasterptr, drawenvptr) | ^~~~~~~~~~ tkRaster.c: In function 'CreateDrawEnv': tkRaster.c:2313:12: warning: old-style function definition [-Wold-style-definition] 2313 | static int CreateDrawEnv (interp, RasterPtr, argc, argv) | ^~~~~~~~~~~~~ tkRaster.c:2353:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2353 | (char*) (RasterPtr->drawEnvCount), | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2573:62: note: in definition of macro 'Tcl_CreateHashEntry' 2573 | (*((tablePtr)->createProc))(tablePtr, (const char *)(key), newPtr) | ^~~ tkRaster.c: In function 'DestroyDrawEnv': tkRaster.c:2369:13: warning: old-style function definition [-Wold-style-definition] 2369 | static void DestroyDrawEnv (RasterPtr, drawenvptr) | ^~~~~~~~~~~~~~ tkRaster.c:2381:34: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2381 | (char*)(drawenvptr->index)); | ^ /usr/include/tcl8.6/tcl-private/generic/tcl.h:2570:60: note: in definition of macro 'Tcl_FindHashEntry' 2570 | (*((tablePtr)->findProc))(tablePtr, (const char *)(key)) | ^~~ tkRaster.c: In function 'myOptionParse': tkRaster.c:2394:1: warning: old-style function definition [-Wold-style-definition] 2394 | myOptionParse (clientData, interp, tkwin, value, widgRec, offset) | ^~~~~~~~~~~~~ tkRaster.c: In function 'myOptionPrint': tkRaster.c:2428:1: warning: old-style function definition [-Wold-style-definition] 2428 | myOptionPrint (clientData, tkwin, widgRec, offset, freeProcPtr) | ^~~~~~~~~~~~~ tkRaster.c: In function 'WorldToRaster': tkRaster.c:2517:6: warning: old-style function definition [-Wold-style-definition] 2517 | void WorldToRaster (raster, wx, wy, rx, ry) | ^~~~~~~~~~~~~ tkRaster.c: In function 'RasterToWorld': tkRaster.c:2537:6: warning: old-style function definition [-Wold-style-definition] 2537 | void RasterToWorld (raster, rx, ry, wx, wy) | ^~~~~~~~~~~~~ tkRaster.c: In function 'SetRasterModifiedArea': tkRaster.c:2565:6: warning: old-style function definition [-Wold-style-definition] 2565 | void SetRasterModifiedArea (raster, rx0, ry0, rx1, ry1) | ^~~~~~~~~~~~~~~~~~~~~ tkRaster.c: In function 'GetRasterDrawable': tkRaster.c:2597:10: warning: old-style function definition [-Wold-style-definition] 2597 | Drawable GetRasterDrawable (raster) | ^~~~~~~~~~~~~~~~~ tkRaster.c: In function 'GetRasterDisplay': tkRaster.c:2603:10: warning: old-style function definition [-Wold-style-definition] 2603 | Display* GetRasterDisplay (raster) | ^~~~~~~~~~~~~~~~ tkRaster.c: In function 'GetRasterTkWin': tkRaster.c:2609:11: warning: old-style function definition [-Wold-style-definition] 2609 | Tk_Window GetRasterTkWin (raster) | ^~~~~~~~~~~~~~ tkRaster.c: In function 'GetRasterGC': tkRaster.c:2615:4: warning: old-style function definition [-Wold-style-definition] 2615 | GC GetRasterGC (raster) | ^~~~~~~~~~~ tkRaster.c: In function 'RasterDrawPoints': tkRaster.c:2628:6: warning: old-style function definition [-Wold-style-definition] 2628 | void RasterDrawPoints (raster, coord, npts) | ^~~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterDrawLines': tkRaster.c:2749:6: warning: old-style function definition [-Wold-style-definition] 2749 | void RasterDrawLines (raster, coord, npts) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/text_utils' tkRaster.c: In function 'RasterDrawRectangles': tkRaster.c:2875:6: warning: old-style function definition [-Wold-style-definition] 2875 | void RasterDrawRectangles (raster, coord, nrects) | ^~~~~~~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterFillRectangles': tkRaster.c:2923:6: warning: old-style function definition [-Wold-style-definition] 2923 | void RasterFillRectangles (raster, coord, nrects) | ^~~~~~~~~~~~~~~~~~~~ tkRaster.c: In function 'RasterFillPolygon': tkRaster.c:2971:6: warning: old-style function definition [-Wold-style-definition] 2971 | void RasterFillPolygon (raster, coord, npts) | ^~~~~~~~~~~~~~~~~ tkTraceDisp.c: In function 'trace_draw_numbers': tkTraceDisp.c:746:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 746 | sprintf(number, "%d", cind); | ^ In file included from /usr/include/stdio.h:970, from tkTraceDisp.c:2: In function 'sprintf', inlined from 'trace_draw_numbers' at tkTraceDisp.c:746:6: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o alfsplit alfsplit.o -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/alf' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/get_scf_field' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/init_exp' gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o getABIfield abiIO.o getABIfield.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/abi' gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./g -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libg.so g-files.o g-db.o g-struct.o freetree.o g-error.o g-io.o g-connect.o g-request.o -lmisc g++ -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o hetins hetins.o -lmisc -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lm gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o eba qual.o conf.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -lmisc -lm -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/g' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/eba' make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/hetins' gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 -I/build/reproducible-path/staden-2.0.0+b11/./primer3/src -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libprimer3.so primer3_lib.o primer3_release.o oligotm.o dpal_primer.o format_output.o boulder_input.o -lm gcc -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o primer3_core primer3_main.o -lprimer3 -lm -lm make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/primer3/src' gcc -shared -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./tk_utils -I/usr/include -I"/usr/include/tcl8.6/tk-private/generic" -I"/usr/include/tcl8.6/tk-private/unix" -I"/usr/include/tcl8.6/tk-private/generic/ttk" -I"/usr/include/tcl8.6/tcl-private/generic" -I"/usr/include/tcl8.6/tcl-private/unix" -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -D_GNU_SOURCE -L/build/reproducible-path/staden-2.0.0+b11/lib -Wl,-z,relro -Wl,-z,now -Wl,--export-dynamic -Wl,-rpath,/usr/lib/staden -o /build/reproducible-path/staden-2.0.0+b11/lib/libtk_utils.so cli_arg.o tclXkeylist.o tclXutil.o tcl_utils.o tcl_debug.o misc.o init.o text_output.o tkRaster.o tkRasterBuiltIn.o sheet.o tkSheet.o tkSheet_common.o trace_print.o postscript.o split.o tkTrace.o tkTraceComp.o tkTraceIO.o tkTraceDisp.o capture.o canvas_box.o ruler_tick.o restriction_enzyme_map.o element_canvas.o container.o container_ruler.o tcl_io_lib.o -L/usr/lib/x86_64-linux-gnu -lstaden-read -Wl,-z,relro -Wl,-z,now -lm -llzma -lbz2 -lcurl -lz -L/usr/lib/x86_64-linux-gnu -ltk8.6 -L/usr/lib/x86_64-linux-gnu -ltcl8.6 -lX11 -lXss -lXext -lXft -lfontconfig -lfreetype -lfontconfig -lpthread -ldl -lz -lpthread -lm -lmisc -lpng -lz make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/tk_utils' cd seq_utils && make -f /build/reproducible-path/staden-2.0.0+b11/./seq_utils/Makefile -j40 --jobserver-auth=fifo:/tmp/GMfifo2517997 BUILD=/build/reproducible-path/staden-2.0.0+b11 SRC=/build/reproducible-path/staden-2.0.0+b11/./seq_utils SUBDIR=seq_utils all make[2]: Entering directory '/build/reproducible-path/staden-2.0.0+b11/seq_utils' make[2]: warning: -j40 forced in submake: resetting jobserver mode. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align.o -c align.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_lib_old.o -c align_lib_old.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_ss.o -c align_ss.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_ss2.o -c align_ss2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_sv.o -c align_sv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o dna_utils.o -c dna_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o genetic_code.o -c genetic_code.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o renz_utils.o -c renz_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o sequence_formats.o -c sequence_formats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o scramble.o -c scramble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o base_comp.o -c base_comp.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o open_reading_frames.o -c open_reading_frames.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o edge.o -c edge.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o search_utils.o -c search_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o align_lib.o -c align_lib.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o read_matrix.o -c read_matrix.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/staden-2.0.0+b11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -m64 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_NON_CONST -I/build/reproducible-path/staden-2.0.0+b11/./seq_utils -I/build/reproducible-path/staden-2.0.0+b11/./Misc -I/build/reproducible-path/staden-2.0.0+b11/./text_utils -I/build/reproducible-path/staden-2.0.0+b11 -DSVN_VERSION="" -fPIC -o filter_words.o -c filter_words.c align_ss.c: In function 'align': align_ss2.c: In function 'align': align_ss.c:48:16: warning: old-style function definition [-Wold-style-definition] 48 | static FastInt align(A,B,M,N,tb,te,topr,botr,lc,rc) unsigned char *A, *B; FastInt M, N; | ^~~~~ align_ss2.c:144:12: warning: old-style function definition [-Wold-style-definition] 144 | static int align(A,B,M,N,tb,te,sc,sr,ec,er) | ^~~~~ align_ss.c: In function 'align_ss': align_ss.c:276:9: warning: old-style function definition [-Wold-style-definition] 276 | FastInt align_ss(A,B,M,N,low,up,W,G,H,S,s1,s2,e1,e2) | ^~~~~~~~ align_ss2.c: In function 'align_ss2': align_ss2.c:343:9: warning: old-style function definition [-Wold-style-definition] 343 | FastInt align_ss2(A,B,M,N,low,up,W,G,H,S,s1,s2,e1,e2) | ^~~~~~~~~ align_ss2.c: In function 'display_ss2': align_ss.c: In function 'display_ss': align_ss2.c:384:6: warning: old-style function definition [-Wold-style-definition] 384 | void display_ss2(A,B,M,N,S,AP,BP) | ^~~~~~~~~~~ align_ss.c:325:6: warning: old-style function definition [-Wold-style-definition] 325 | void display_ss(A,B,M,N,S,AP,BP) | ^~~~~~~~~~ align.c:12:36: error: initialization of 'FastInt (*)(void)' {aka 'int (*)(void)'} from incompatible pointer type 'FastInt (*)(char *, char *, FastInt, FastInt, FastInt, FastInt, FastInt (*)[128], FastInt, FastInt, FastInt *, FastInt, FastInt, FastInt, FastInt)' {aka 'int (*)(char *, char *, int, int, int, int, int (*)[128], int, int, int *, int, int, int, int)'} [-Wincompatible-pointer-types] 12 | static FastInt (*align_arr[])() = {align_ss, | ^~~~~~~~ align.c:12:36: note: (near initialization for 'align_arr[0]') In file included from align.c:6: align.h:60:16: note: 'align_ss' declared here 60 | extern FastInt align_ss(char *A, char *B, FastInt M, FastInt N, | ^~~~~~~~ align.c:13:36: error: initialization of 'FastInt (*)(void)' {aka 'int (*)(void)'} from incompatible pointer type 'FastInt (*)(char *, FastInt (*)[6], FastInt, FastInt, FastInt, FastInt, FastInt (*)[128], FastInt, FastInt, FastInt *, FastInt, FastInt, FastInt, FastInt)' {aka 'int (*)(char *, int (*)[6], int, int, int, int, int (*)[128], int, int, int *, int, int, int, int)'} [-Wincompatible-pointer-types] 13 | align_sv, | ^~~~~~~~ align.c:13:36: note: (near initialization for 'align_arr[1]') align.h:70:16: note: 'align_sv' declared here 70 | extern FastInt align_sv(char *A, FastInt (*B)[6], FastInt M, | ^~~~~~~~ align.c:15:36: error: initialization of 'FastInt (*)(void)' {aka 'int (*)(void)'} from incompatible pointer type 'FastInt (*)(char *, char *, FastInt, FastInt, FastInt, FastInt, FastInt (*)[128], FastInt, FastInt, FastInt *, FastInt, FastInt, FastInt, FastInt)' {aka 'int (*)(char *, char *, int, int, int, int, int (*)[128], int, int, int *, int, int, int, int)'} [-Wincompatible-pointer-types] 15 | align_ss2}; | ^~~~~~~~~ align.c:15:36: note: (near initialization for 'align_arr[3]') align.h:65:16: note: 'align_ss2' declared here 65 | extern FastInt align_ss2(char *A, char *B, FastInt M, FastInt N, | ^~~~~~~~~ align.c:16:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, char *, FastInt, FastInt, FastInt *, FastInt, FastInt)' {aka 'void (*)(char *, char *, int, int, int *, int, int)'} [-Wincompatible-pointer-types] 16 | static void (*display_arr[])() = {display_ss, | ^~~~~~~~~~ align.c:16:36: note: (near initialization for 'display_arr[0]') align.h:80:13: note: 'display_ss' declared here 80 | extern void display_ss(char *A, char *B, FastInt M, FastInt N, | ^~~~~~~~~~ align.c:17:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, FastInt (*)[6], FastInt, FastInt, FastInt *, FastInt, FastInt)' {aka 'void (*)(char *, int (*)[6], int, int, int *, int, int)'} [-Wincompatible-pointer-types] 17 | display_sv, | ^~~~~~~~~~ align.c:17:36: note: (near initialization for 'display_arr[1]') align.h:86:13: note: 'display_sv' declared here 86 | extern void display_sv(char *A, FastInt (*B)[6], FastInt M, FastInt N, | ^~~~~~~~~~ align.c:18:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, FastInt (*)[6], FastInt, FastInt, FastInt *, FastInt, FastInt)' {aka 'void (*)(char *, int (*)[6], int, int, int *, int, int)'} [-Wincompatible-pointer-types] 18 | display_sv, | ^~~~~~~~~~ align.c:18:36: note: (near initialization for 'display_arr[2]') align.h:86:13: note: 'display_sv' declared here 86 | extern void display_sv(char *A, FastInt (*B)[6], FastInt M, FastInt N, | ^~~~~~~~~~ align.c:19:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, char *, FastInt, FastInt, FastInt *, FastInt, FastInt)' {aka 'void (*)(char *, char *, int, int, int *, int, int)'} [-Wincompatible-pointer-types] 19 | display_ss2}; | ^~~~~~~~~~~ align.c:19:36: note: (near initialization for 'display_arr[3]') align.h:83:13: note: 'display_ss2' declared here 83 | extern void display_ss2(char *A, char *B, FastInt M, FastInt N, | ^~~~~~~~~~~ align_sv.c: In function 'align': align.c:20:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, char *, int, int, char *, char *, int *, int *, FastInt *, int)' {aka 'void (*)(char *, char *, int, int, char *, char *, int *, int *, int *, int)'} [-Wincompatible-pointer-types] 20 | static void (*expand_arr[])() = {expand, | ^~~~~~ align.c:20:36: note: (near initialization for 'expand_arr[0]') align_sv.c:55:16: warning: old-style function definition [-Wold-style-definition] 55 | static FastInt align(A,B,M,N,tb,te,topr,botr,lc,rc) | ^~~~~ In file included from align.h:89: align_lib_old.h:8:13: note: 'expand' declared here 8 | extern void expand(char *A, char *B, int M, int N, | ^~~~~~ align.c:21:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, FastInt (*)[6], int, int, char *, FastInt (*)[6], int *, int *, FastInt *, int)' {aka 'void (*)(char *, int (*)[6], int, int, char *, int (*)[6], int *, int *, int *, int)'} [-Wincompatible-pointer-types] 21 | expand_6, | ^~~~~~~~ align.c:21:36: note: (near initialization for 'expand_arr[1]') align_lib_old.h:11:13: note: 'expand_6' declared here 11 | extern void expand_6(char *A, FastInt (*B)[6], int M, int N, | ^~~~~~~~ align.c:22:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, FastInt (*)[6], int, int, char *, FastInt (*)[6], int *, int *, FastInt *, int)' {aka 'void (*)(char *, int (*)[6], int, int, char *, int (*)[6], int *, int *, int *, int)'} [-Wincompatible-pointer-types] 22 | expand_6, | ^~~~~~~~ align.c:22:36: note: (near initialization for 'expand_arr[2]') align_lib_old.h:11:13: note: 'expand_6' declared here 11 | extern void expand_6(char *A, FastInt (*B)[6], int M, int N, | ^~~~~~~~ align.c:23:36: error: initialization of 'void (*)(void)' from incompatible pointer type 'void (*)(char *, char *, int, int, char *, char *, int *, int *, FastInt *, int)' {aka 'void (*)(char *, char *, int, int, char *, char *, int *, int *, int *, int)'} [-Wincompatible-pointer-types] 23 | expand}; | ^~~~~~ align.c:23:36: note: (near initialization for 'expand_arr[3]') align_lib_old.h:8:13: note: 'expand' declared here 8 | extern void expand(char *A, char *B, int M, int N, | ^~~~~~ align.c: In function 'calignm': align.c:120:14: error: too many arguments to function 'align_arr[ajob]'; expected 0, have 14 120 | retval = align_arr[ajob](seq1, seq2, (FastInt)len1, (FastInt)len2, | ^~~~~~~~~ ~~~~ align.c:134:13: error: too many arguments to function 'expand_arr[ajob]'; expected 0, have 10 134 | expand_arr[ajob](seq1, seq2, len1, len2, | ^~~~~~~~~~ ~~~~ align.c: In function 'cdisplay': align.c:169:5: error: too many arguments to function 'display_arr[job & 15]'; expected 0, have 7 169 | display_arr[job & ALIGN_J_MASK](seq1, seq2, len1, len2, | ^~~~~~~~~~~ ~~~~ align.c: In function 'cexpand': align.c:188:5: error: too many arguments to function 'expand_arr[job & 15]'; expected 0, have 10 188 | expand_arr[job & ALIGN_J_MASK](seq1, seq2, len1, len2, | ^~~~~~~~~~ ~~~~ align_sv.c: In function 'align_sv': align_sv.c:339:9: warning: old-style function definition [-Wold-style-definition] 339 | FastInt align_sv(A,B,M,N,low,up,W,G,H,S,s1,s2,e1,e2) | ^~~~~~~~ align_sv.c: In function 'display_sv': align_sv.c:456:6: warning: old-style function definition [-Wold-style-definition] 456 | void display_sv(A,B,M,N,S,AP,BP) | ^~~~~~~~~~ sequence_formats.c: In function 'get_embl_format_seq': sequence_formats.c:729:29: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 729 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:738:33: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 738 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c: In function 'add_feat': sequence_formats.c:481:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 481 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ sequence_formats.c:510:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 510 | fgets(line, loc_len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: *** [/build/reproducible-path/staden-2.0.0+b11/./seq_utils/../global.mk:388: align.o] Error 1 make[2]: *** Waiting for unfinished jobs.... renz_utils.c: In function 'SetREnzColour': renz_utils.c:1049:35: warning: '__builtin___sprintf_chk' writing a terminating nul past the end of the destination [-Wformat-overflow=] 1049 | sprintf(colour, "#%02x%02x%02x", r, g, b); | ^ In file included from /usr/include/stdio.h:970, from renz_utils.c:3: In function 'sprintf', inlined from 'SetREnzColour' at renz_utils.c:1049:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 8 and 26 bytes into a destination of size 7 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/seq_utils' make[1]: *** [Makefile:174: seq_utils] Error 2 make[1]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11' dh_auto_build: error: make -j40 returned exit code 2 make: *** [debian/rules:12: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2507905 and its subdirectories staden failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/staden_2.0.0+b11-5.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/staden_2.0.0+b11-5.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/staden_2.0.0+b11-5.build1.log.gz' Mon Sep 15 08:40:11 UTC 2025 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 87.7% -- replaced with stdout INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-15 08:40:11] INFO: Starting at 2025-09-15 08:40:11.566077 [2025-09-15 08:40:11] INFO: Generating the pages of 1 package(s) [2025-09-15 08:40:11] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/staden didn't produce a buildlog, even though it has been built. [2025-09-15 08:40:11] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/staden didn't produce a buildlog, even though it has been built. [2025-09-15 08:40:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/amd64/staden_2.0.0+b11-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/amd64/staden_2.0.0+b11-6.diff.gz is missing [2025-09-15 08:40:11] INFO: Finished at 2025-09-15 08:40:11.867992, took: 0:00:00.301918 Mon Sep 15 08:40:11 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/staden.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/staden_2.0.0+b11-5.rbuild.log: 87.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/staden_2.0.0+b11-5.rbuild.log.gz [2025-09-15 08:40:12] INFO: Starting at 2025-09-15 08:40:12.230280 [2025-09-15 08:40:12] INFO: Generating the pages of 1 package(s) [2025-09-15 08:40:12] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/staden_2.0.0+b11-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/staden_2.0.0+b11-5.diff.gz is missing [2025-09-15 08:40:12] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/staden didn't produce a buildlog, even though it has been built. [2025-09-15 08:40:12] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/amd64/staden_2.0.0+b11-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/amd64/staden_2.0.0+b11-6.diff.gz is missing [2025-09-15 08:40:12] INFO: Finished at 2025-09-15 08:40:12.547693, took: 0:00:00.317416 All cleanup done. Mon Sep 15 08:40:12 UTC 2025 - total duration: 0h 1m 28s. Mon Sep 15 08:40:12 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-asoJhJmA, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 1min 29.325s CPU time consumed: 2.653s Memory peak: 41.2M (swap: 0B)