Running as unit: rb-build-amd64_3-63628.service ==================================================================================== Wed Aug 6 06:13:31 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_3) on jenkins, called using "ionos1-amd64 ionos15-amd64" as arguments. Wed Aug 6 06:13:31 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-5wVotZ7x" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Aug 6 06:13:31 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Wed Aug 6 06:13:31 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-G5AsG3' Wed Aug 6 06:13:32 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Aug 6 06:13:32 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-VJNflt' ok, let's check if libbpp-popgen is building anywhere yet… ok, libbpp-popgen is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libbpp-popgen in trixie on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Wed Aug 6 06:13:53 UTC 2025 I: starting to build libbpp-popgen/trixie/amd64 on jenkins on '2025-08-06 06:13' Wed Aug 6 06:13:53 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_3/63628/console.log 1754460833 amd64 trixie libbpp-popgen Wed Aug 6 06:13:53 UTC 2025 I: Downloading source for trixie/libbpp-popgen=2.4.1-11 --2025-08-06 06:13:53-- http://deb.debian.org/debian/pool/main/libb/libbpp-popgen/libbpp-popgen_2.4.1-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2218 (2.2K) [text/prs.lines.tag] Saving to: ‘libbpp-popgen_2.4.1-11.dsc’ 0K .. 100% 279M=0s 2025-08-06 06:13:53 (279 MB/s) - ‘libbpp-popgen_2.4.1-11.dsc’ saved [2218/2218] --2025-08-06 06:13:53-- http://deb.debian.org/debian/pool/main/libb/libbpp-popgen/libbpp-popgen_2.4.1-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2218 (2.2K) [text/prs.lines.tag] Saving to: ‘libbpp-popgen_2.4.1-11.dsc’ 0K .. 100% 279M=0s 2025-08-06 06:13:53 (279 MB/s) - ‘libbpp-popgen_2.4.1-11.dsc’ saved [2218/2218] Wed Aug 6 06:13:53 UTC 2025 I: libbpp-popgen_2.4.1-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbpp-popgen Binary: libbpp-popgen-dev, libbpp-popgen8t64 Architecture: any Version: 2.4.1-11 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-popgen Vcs-Git: https://salsa.debian.org/med-team/libbpp-popgen.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-core-dev, libbpp-seq-dev Package-List: libbpp-popgen-dev deb libdevel optional arch=any libbpp-popgen8t64 deb libs optional arch=any Checksums-Sha1: 87cd4dfa9e51b37af0bfde87b4762464a4cc49ae 116874 libbpp-popgen_2.4.1.orig.tar.gz a90efe53365d682ecb7d49d7b8bb3153de473cd6 15316 libbpp-popgen_2.4.1-11.debian.tar.xz Checksums-Sha256: 03b57d71a63c8fa7f11c085e531d0d691fc1d40d4ea541070dabde0ab3baf413 116874 libbpp-popgen_2.4.1.orig.tar.gz 7247a42114a4dfc08e991a64f03ae65d10c33f41c3a8fabbb379a1ead9be71ef 15316 libbpp-popgen_2.4.1-11.debian.tar.xz Files: cdc84495e251b6ff4260385adecbea28 116874 libbpp-popgen_2.4.1.orig.tar.gz 1ea6f7d87cc4067388431ca386dab0c5 15316 libbpp-popgen_2.4.1-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmaSE/kOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtFnzw//W8HOrV+E8fNg5sraWpsf7CVAb9SmRcFh4TNw iqBhpvWihqNthbS2Msma5qD85nx9pVW5ndIFvTpU3mXDu7aTy1ckGyOS3qXnlwqO n7ubukdspSzdRYDOy+rjCFbsttM+o0FYWtQys8d7DYUKa4QHJoWjqI2l42kDRbpC N91u3yrNDIa5KSckSL+X9DLIlumsDlWeyLvaOkLULjLJ4/yrDcLis0i2ghV9w3Wl xayOwuyNH8DYLXJ87rTbFLvpCljIfFYUHGRzFJeX6pqrAwJ3o+ubfC0rDcbDPAmK VZIgsq/eLR9Q0TYjBGtewJfU4T4hAoMGugt3xmDJMw3LMuwx7HrTpuoymfXQaNOj 6i8xIUWycAunXLWEOnPM9IltV+QmdVkwJgkCGkVrs5LYz41jh8JBnO5UPWzuUEwl jZ7R9d+gPJB9j8CB1DP6MY5i4O8wLvb1cGtCeslM1M2Rh47a6nl1PUfznXXyDUpx ofdAAUU2YvttMoEiaLPKY/3p1Ubactck6GnFCToYdp5KmzRz/RO2FC1yinYWDqD2 N89ZZ3Dj8BDQ9QDD1aknHLvGJr5d46c/iBVhOJB1dNlg1Nk42x4nU2rSO1KkgJ2b 4HTy7hxdE4CEoccUgk5Xi7uqUzcXbLlznCs+WkDW3tVbp+0J1MzLZOfEpleynVhm LCy6S80= =69h6 -----END PGP SIGNATURE----- Wed Aug 6 06:13:53 UTC 2025 I: Checking whether the package is not for us Wed Aug 6 06:13:53 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Wed Aug 6 06:13:53 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Wed Aug 6 06:13:53 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Wed Aug 6 06:13:53 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-EucFDa' ==================================================================================== Wed Aug 6 06:13:54 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 libbpp-popgen trixie /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31 2.4.1-11" as arguments. Wed Aug 6 06:13:54 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-fuH5KeqE" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Aug 6 06:13:54 UTC 2025 I: Downloading source for trixie/libbpp-popgen=2.4.1-11 Reading package lists... NOTICE: 'libbpp-popgen' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbpp-popgen.git Please use: git clone https://salsa.debian.org/med-team/libbpp-popgen.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 134 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (dsc) [2218 B] Get:2 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (tar) [117 kB] Get:3 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (diff) [15.3 kB] Fetched 134 kB in 0s (1237 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbpp-popgen' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbpp-popgen.git Please use: git clone https://salsa.debian.org/med-team/libbpp-popgen.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 134 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (dsc) [2218 B] Get:2 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (tar) [117 kB] Get:3 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (diff) [15.3 kB] Fetched 134 kB in 0s (1237 kB/s) Download complete and in download only mode ============================================================================= Building libbpp-popgen in trixie on amd64 on ionos1-amd64 now. Date: Wed Aug 6 06:13:54 UTC 2025 Date UTC: Wed Aug 6 06:13:54 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 5 18:13:54 -12 2025 I: pbuilder-time-stamp: 1754460834 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-popgen_2.4.1-11.dsc] I: copying [./libbpp-popgen_2.4.1.orig.tar.gz] I: copying [./libbpp-popgen_2.4.1-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbpp-popgen_2.4.1-11.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-popgen in libbpp-popgen-2.4.1 dpkg-source: info: unpacking libbpp-popgen_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-popgen_2.4.1-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3775411/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b02e69f1942f4ba7ad61e4875de343cd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3775411' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/pbuilderrc_U6vx --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b1 --logfile b1/build.log libbpp-popgen_2.4.1-11.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3775411/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-core-dev, libbpp-seq-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbpp-core-dev; however: Package libbpp-core-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev; however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 34.3 MB of archives. After unpacking 135 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libbpp-core4t64 amd64 2.4.1-13+b1 [629 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libbpp-core-dev amd64 2.4.1-13+b1 [967 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbpp-seq12t64 amd64 2.4.1-13 [510 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libbpp-seq-dev amd64 2.4.1-13 [745 kB] Fetched 34.3 MB in 6s (5859 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. 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Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbpp-seq12t64:amd64 (2.4.1-13) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libbpp-seq-dev:amd64 (2.4.1-13) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libarchive13t64:amd64 (3.7.4-4) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbpp-popgen-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-popgen_2.4.1-11_source.changes dpkg-buildpackage: info: source package libbpp-popgen dpkg-buildpackage: info: source version 2.4.1-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.0s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-popgen-2.4.1 -B/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend make -f 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-I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' [ 69%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o [ 72%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' [ 75%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' [ 80%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' [ 82%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' [ 85%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' [ 88%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o [ 91%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 93%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o [ 95%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp [ 98%] Linking CXX shared library libbpp-popgen.so cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/bpp-popgen-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-popgen.so.8 -o libbpp-popgen.so.8.0.0 "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-popgen.so.8.0.0 libbpp-popgen.so.8 libbpp-popgen.so make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [ 98%] Built target bpp-popgen-shared [100%] Linking CXX static library libbpp-popgen.a cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-popgen-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-popgen.a "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/bin/ranlib libbpp-popgen.a make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [100%] Built target bpp-popgen-static make[2]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-popgen-2.4.1 -B/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config-version.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/LocusInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotypeTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/AlleleInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-popgen-dev PKGSHL=libbpp-popgen8t64 install -d -m 755 debian/libbpp-popgen-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-popgen-dev/usr/include install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-popgen-dev' in '../libbpp-popgen-dev_2.4.1-11_amd64.deb'. dpkg-deb: building package 'libbpp-popgen8t64' in '../libbpp-popgen8t64_2.4.1-11_amd64.deb'. dpkg-deb: building package 'libbpp-popgen8t64-dbgsym' in '../libbpp-popgen8t64-dbgsym_2.4.1-11_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-popgen_2.4.1-11_amd64.buildinfo dpkg-genchanges --build=binary -O../libbpp-popgen_2.4.1-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3775411 and its subdirectories I: Current time: Tue Aug 5 18:15:18 -12 2025 I: pbuilder-time-stamp: 1754460918 Wed Aug 6 06:15:18 UTC 2025 I: Signing ./b1/libbpp-popgen_2.4.1-11_amd64.buildinfo as libbpp-popgen_2.4.1-11_amd64.buildinfo.asc Wed Aug 6 06:15:18 UTC 2025 I: Signed ./b1/libbpp-popgen_2.4.1-11_amd64.buildinfo as ./b1/libbpp-popgen_2.4.1-11_amd64.buildinfo.asc Wed Aug 6 06:15:18 UTC 2025 - build #1 for libbpp-popgen/trixie/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Wed Aug 6 06:15:18 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-fuH5KeqE, removing. /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Aug 6 06:15 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 6 06:13 b2 -rw-r--r-- 1 jenkins jenkins 2218 Jul 13 2024 libbpp-popgen_2.4.1-11.dsc -rw------- 1 jenkins jenkins 3363 Aug 6 06:13 rbuildlog.GYnpO47 /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b1: total 4388 -rw-r--r-- 1 jenkins jenkins 147346 Aug 6 06:15 build.log -rw-r--r-- 1 jenkins jenkins 313132 Aug 6 06:15 libbpp-popgen-dev_2.4.1-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 3738280 Aug 6 06:15 libbpp-popgen8t64-dbgsym_2.4.1-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 244136 Aug 6 06:15 libbpp-popgen8t64_2.4.1-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 15316 Aug 6 06:15 libbpp-popgen_2.4.1-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2218 Aug 6 06:15 libbpp-popgen_2.4.1-11.dsc -rw-r--r-- 1 jenkins jenkins 6678 Aug 6 06:15 libbpp-popgen_2.4.1-11_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7560 Aug 6 06:15 libbpp-popgen_2.4.1-11_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2037 Aug 6 06:15 libbpp-popgen_2.4.1-11_amd64.changes -rw-r--r-- 1 jenkins jenkins 1478 Aug 6 06:15 libbpp-popgen_2.4.1-11_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b2: total 0 Wed Aug 6 06:15:19 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 5 18:13:54 -12 2025 I: pbuilder-time-stamp: 1754460834 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-popgen_2.4.1-11.dsc] I: copying [./libbpp-popgen_2.4.1.orig.tar.gz] I: copying [./libbpp-popgen_2.4.1-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbpp-popgen_2.4.1-11.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-popgen in libbpp-popgen-2.4.1 dpkg-source: info: unpacking libbpp-popgen_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-popgen_2.4.1-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3775411/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b02e69f1942f4ba7ad61e4875de343cd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3775411' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/pbuilderrc_U6vx --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b1 --logfile b1/build.log libbpp-popgen_2.4.1-11.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3775411/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-core-dev, libbpp-seq-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbpp-core-dev; however: Package libbpp-core-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev; however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 34.3 MB of archives. After unpacking 135 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libbpp-core4t64 amd64 2.4.1-13+b1 [629 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libbpp-core-dev amd64 2.4.1-13+b1 [967 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbpp-seq12t64 amd64 2.4.1-13 [510 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libbpp-seq-dev amd64 2.4.1-13 [745 kB] Fetched 34.3 MB in 6s (5859 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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Preparing to unpack .../21-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../28-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../29-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../32-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../33-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../34-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../35-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../36-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../37-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../38-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../39-libgnutls30t64_3.8.9-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../40-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../41-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../42-libcurl4t64_8.14.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.14.1-2) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../43-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../44-librhash1_1.4.5-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../45-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../46-cmake_3.31.6-2_amd64.deb ... Unpacking cmake (3.31.6-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../47-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../48-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../49-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../50-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... 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Unpacking libbpp-seq12t64:amd64 (2.4.1-13) ... Selecting previously unselected package libbpp-seq-dev:amd64. Preparing to unpack .../63-libbpp-seq-dev_2.4.1-13_amd64.deb ... Unpacking libbpp-seq-dev:amd64 (2.4.1-13) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libbpp-core4t64:amd64 (2.4.1-13+b1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbpp-popgen-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-popgen_2.4.1-11_source.changes dpkg-buildpackage: info: source package libbpp-popgen dpkg-buildpackage: info: source version 2.4.1-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.0s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY 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-o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/GeneralExceptions.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/GeneralExceptions.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' [ 69%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o [ 72%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' [ 75%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' [ 80%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' [ 82%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' [ 85%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' [ 88%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o [ 91%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 93%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o [ 95%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp [ 98%] Linking CXX shared library libbpp-popgen.so cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/bpp-popgen-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-popgen.so.8 -o libbpp-popgen.so.8.0.0 "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-popgen.so.8.0.0 libbpp-popgen.so.8 libbpp-popgen.so make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [ 98%] Built target bpp-popgen-shared [100%] Linking CXX static library libbpp-popgen.a cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-popgen-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-popgen.a "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/bin/ranlib libbpp-popgen.a make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [100%] Built target bpp-popgen-static make[2]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-popgen-2.4.1 -B/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config-version.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/LocusInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotypeTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/AlleleInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-popgen-dev PKGSHL=libbpp-popgen8t64 install -d -m 755 debian/libbpp-popgen-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-popgen-dev/usr/include install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-popgen-dev' in '../libbpp-popgen-dev_2.4.1-11_amd64.deb'. dpkg-deb: building package 'libbpp-popgen8t64' in '../libbpp-popgen8t64_2.4.1-11_amd64.deb'. dpkg-deb: building package 'libbpp-popgen8t64-dbgsym' in '../libbpp-popgen8t64-dbgsym_2.4.1-11_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-popgen_2.4.1-11_amd64.buildinfo dpkg-genchanges --build=binary -O../libbpp-popgen_2.4.1-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3775411 and its subdirectories I: Current time: Tue Aug 5 18:15:18 -12 2025 I: pbuilder-time-stamp: 1754460918 Wed Aug 6 06:15:19 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed Aug 6 06:15:19 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed Aug 6 06:15:19 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Aug 6 06:15:19 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-8ZTDuz' ==================================================================================== Tue Sep 8 12:38:20 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 libbpp-popgen trixie /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31 2.4.1-11" as arguments. Tue Sep 8 12:38:20 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-2vL9xt30" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Sep 8 12:38:20 UTC 2026 I: Downloading source for trixie/libbpp-popgen=2.4.1-11 Reading package lists... NOTICE: 'libbpp-popgen' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbpp-popgen.git Please use: git clone https://salsa.debian.org/med-team/libbpp-popgen.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 134 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (dsc) [2218 B] Get:2 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (tar) [117 kB] Get:3 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (diff) [15.3 kB] Fetched 134 kB in 0s (7718 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbpp-popgen' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbpp-popgen.git Please use: git clone https://salsa.debian.org/med-team/libbpp-popgen.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 134 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (dsc) [2218 B] Get:2 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (tar) [117 kB] Get:3 http://deb.debian.org/debian trixie/main libbpp-popgen 2.4.1-11 (diff) [15.3 kB] Fetched 134 kB in 0s (7718 kB/s) Download complete and in download only mode ============================================================================= Re-Building libbpp-popgen in trixie on amd64 on ionos15-amd64 now. Date: Tue Sep 8 12:38:20 UTC 2026 Date UTC: Tue Sep 8 12:38:20 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/pbuilderrc_Njk2 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libbpp-popgen = debian-installer -o libbpp-popgen = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libbpp-popgen = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/pbuilderrc_Njk2 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b2 --logfile b2/build.log libbpp-popgen_2.4.1-11.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 9 02:38:20 +14 2026 I: pbuilder-time-stamp: 1788871100 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-popgen_2.4.1-11.dsc] I: copying [./libbpp-popgen_2.4.1.orig.tar.gz] I: copying [./libbpp-popgen_2.4.1-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbpp-popgen_2.4.1-11.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-popgen in libbpp-popgen-2.4.1 dpkg-source: info: unpacking libbpp-popgen_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-popgen_2.4.1-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 8 12:38 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=f2ed01d9b6384587a5567c94bd2d1028 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3426529 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/pbuilderrc_Njk2 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b2 --logfile b2/build.log libbpp-popgen_2.4.1-11.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-core-dev, libbpp-seq-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbpp-core-dev; however: Package libbpp-core-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev; however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 34.3 MB of archives. After unpacking 135 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-4 [349 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libbpp-core4t64 amd64 2.4.1-13+b1 [629 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libbpp-core-dev amd64 2.4.1-13+b1 [967 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbpp-seq12t64 amd64 2.4.1-13 [510 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libbpp-seq-dev amd64 2.4.1-13 [745 kB] Fetched 34.3 MB in 9s (4026 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbpp-popgen-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbpp-popgen_2.4.1-11_source.changes dpkg-buildpackage: info: source package libbpp-popgen dpkg-buildpackage: info: source version 2.4.1-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-popgen-2.4.1 -B/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend make -f 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/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [ 3%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o [ 6%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o [ 16%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o [ 29%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o [ 30%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o.d -o 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/GeneralExceptions.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' [ 70%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' [ 74%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' [ 75%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' [ 87%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o [ 87%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o [ 93%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o [ 93%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o [ 95%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp [ 98%] Linking CXX shared library libbpp-popgen.so cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-shared.dir/link.txt --verbose=1 [100%] Linking CXX static library libbpp-popgen.a cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-popgen-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-static.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/bpp-popgen-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-popgen.so.8 -o libbpp-popgen.so.8.0.0 "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-popgen.so.8.0.0 libbpp-popgen.so.8 libbpp-popgen.so make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [100%] Built target bpp-popgen-shared /usr/bin/ar qc libbpp-popgen.a "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/bin/ranlib libbpp-popgen.a make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [100%] Built target bpp-popgen-static make[2]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-popgen-2.4.1 -B/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config-version.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/LocusInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotypeTools.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/AlleleInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-popgen-dev PKGSHL=libbpp-popgen8t64 install -d -m 755 debian/libbpp-popgen-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-popgen-dev/usr/include install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-popgen-dev' in '../libbpp-popgen-dev_2.4.1-11_amd64.deb'. dpkg-deb: building package 'libbpp-popgen8t64' in '../libbpp-popgen8t64_2.4.1-11_amd64.deb'. dpkg-deb: building package 'libbpp-popgen8t64-dbgsym' in '../libbpp-popgen8t64-dbgsym_2.4.1-11_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-popgen_2.4.1-11_amd64.buildinfo dpkg-genchanges --build=binary -O../libbpp-popgen_2.4.1-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3426529 and its subdirectories I: Current time: Wed Sep 9 02:40:05 +14 2026 I: pbuilder-time-stamp: 1788871205 + false + set +x Tue Sep 8 12:40:05 UTC 2026 I: Signing ./b2/libbpp-popgen_2.4.1-11_amd64.buildinfo as libbpp-popgen_2.4.1-11_amd64.buildinfo.asc Tue Sep 8 12:40:05 UTC 2026 I: Signed ./b2/libbpp-popgen_2.4.1-11_amd64.buildinfo as ./b2/libbpp-popgen_2.4.1-11_amd64.buildinfo.asc Tue Sep 8 12:40:05 UTC 2026 - build #2 for libbpp-popgen/trixie/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Tue Sep 8 12:40:05 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-2vL9xt30, removing. /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31: total 164 drwxr-xr-x 2 jenkins jenkins 4096 Aug 6 06:15 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 6 06:17 b2 -rw-r--r-- 1 jenkins jenkins 2218 Jul 13 2024 libbpp-popgen_2.4.1-11.dsc -rw------- 1 jenkins jenkins 150997 Aug 6 06:15 rbuildlog.GYnpO47 /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b1: total 4404 -rw-r--r-- 1 jenkins jenkins 147346 Aug 6 06:15 build.log -rw-r--r-- 1 jenkins jenkins 313132 Aug 6 06:15 libbpp-popgen-dev_2.4.1-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 3738280 Aug 6 06:15 libbpp-popgen8t64-dbgsym_2.4.1-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 244136 Aug 6 06:15 libbpp-popgen8t64_2.4.1-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 15316 Aug 6 06:15 libbpp-popgen_2.4.1-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2218 Aug 6 06:15 libbpp-popgen_2.4.1-11.dsc -rw-r--r-- 1 jenkins jenkins 6678 Aug 6 06:15 libbpp-popgen_2.4.1-11_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7560 Aug 6 06:15 libbpp-popgen_2.4.1-11_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2037 Aug 6 06:15 libbpp-popgen_2.4.1-11_amd64.changes -rw-r--r-- 1 jenkins jenkins 1478 Aug 6 06:15 libbpp-popgen_2.4.1-11_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b2: total 4392 -rw-r--r-- 1 jenkins jenkins 149292 Aug 6 06:17 build.log -rw-r--r-- 1 jenkins jenkins 313132 Aug 6 06:17 libbpp-popgen-dev_2.4.1-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 3738280 Aug 6 06:17 libbpp-popgen8t64-dbgsym_2.4.1-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 244136 Aug 6 06:17 libbpp-popgen8t64_2.4.1-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 15316 Aug 6 06:17 libbpp-popgen_2.4.1-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2218 Aug 6 06:17 libbpp-popgen_2.4.1-11.dsc -rw-r--r-- 1 jenkins jenkins 6691 Aug 6 06:17 libbpp-popgen_2.4.1-11_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7573 Aug 6 06:17 libbpp-popgen_2.4.1-11_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2037 Aug 6 06:17 libbpp-popgen_2.4.1-11_amd64.changes -rw-r--r-- 1 jenkins jenkins 1478 Aug 6 06:17 libbpp-popgen_2.4.1-11_source.changes Wed Aug 6 06:17:06 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed Aug 6 06:17:08 UTC 2025 I: libbpp-popgen_2.4.1-11_amd64.changes: Format: 1.8 Date: Sat, 13 Jul 2024 06:55:24 +0200 Source: libbpp-popgen Binary: libbpp-popgen-dev libbpp-popgen8t64 libbpp-popgen8t64-dbgsym Architecture: amd64 Version: 2.4.1-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbpp-popgen-dev - Bio++ Population Genetics library development files libbpp-popgen8t64 - Bio++ Population Genetics library Closes: 1075151 Changes: libbpp-popgen (2.4.1-11) unstable; urgency=medium . * Since every GCC version bump ends up in a bug caused by the need to update symbols files we stop providing symbols for this library Closes: #1075151 * lintian-override for no-symbols-control-file * Standards-Version: 4.7.0 Checksums-Sha1: 7eee64b10e19b1a3ce016c9a4235a4bf1dfb6c67 313132 libbpp-popgen-dev_2.4.1-11_amd64.deb a9b82c6e9c191f3c4c1c7083972cf296b8404414 3738280 libbpp-popgen8t64-dbgsym_2.4.1-11_amd64.deb 790ed73f9d4acb03adea331929a95cc473b23440 244136 libbpp-popgen8t64_2.4.1-11_amd64.deb 310e7eaff8ea6222a1ea3398e5a9034ae683700a 6678 libbpp-popgen_2.4.1-11_amd64.buildinfo Checksums-Sha256: e7c51b9c0d5a6301d9910ed0a29d046dc69f87c0c9a221212b97608a3de96dc8 313132 libbpp-popgen-dev_2.4.1-11_amd64.deb b11b65f341b5dcae30bcce018c000d3a05ad366aa24a0530f21efea07ce1eaf0 3738280 libbpp-popgen8t64-dbgsym_2.4.1-11_amd64.deb 308f97034638f77780d1b47eed644ff40af06c900d72604096973160fad59bd9 244136 libbpp-popgen8t64_2.4.1-11_amd64.deb 65969af35f1638672fd6e8203f71ed13e0266e26a37b9fe6e4115e4422affd61 6678 libbpp-popgen_2.4.1-11_amd64.buildinfo Files: 85a69962f8962f48ff6a97e82b773386 313132 libdevel optional libbpp-popgen-dev_2.4.1-11_amd64.deb dd2252b87724e060a4b6c40dc60ef198 3738280 debug optional libbpp-popgen8t64-dbgsym_2.4.1-11_amd64.deb c20008cf88d6ba969616846f34ce70a8 244136 libs optional libbpp-popgen8t64_2.4.1-11_amd64.deb 7a7988f7e8498ea05e2cc50da63b3fc6 6678 science optional libbpp-popgen_2.4.1-11_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbpp-popgen_2.4.1-11.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbpp-popgen_2.4.1-11.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/libbpp-popgen_2.4.1-11.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/libbpp-popgen_2.4.1-11.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/libbpp-popgen_2.4.1-11_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libbpp-popgen_2.4.1-11.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-08-06 06:15:19.423482577 +0000 +++ b2/build.log 2025-08-06 06:17:06.611616376 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Aug 5 18:13:54 -12 2025 -I: pbuilder-time-stamp: 1754460834 +I: Current time: Wed Sep 9 02:38:20 +14 2026 +I: pbuilder-time-stamp: 1788871100 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3775411/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 8 12:38 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='b02e69f1942f4ba7ad61e4875de343cd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3775411' - PS1='# ' - PS2='> ' + INVOCATION_ID=f2ed01d9b6384587a5567c94bd2d1028 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3426529 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/pbuilderrc_U6vx --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b1 --logfile b1/build.log libbpp-popgen_2.4.1-11.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/pbuilderrc_Njk2 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b2 --logfile b2/build.log libbpp-popgen_2.4.1-11.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3775411/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -178,7 +210,7 @@ Get: 62 http://deb.debian.org/debian trixie/main amd64 libbpp-core-dev amd64 2.4.1-13+b1 [967 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbpp-seq12t64 amd64 2.4.1-13 [510 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libbpp-seq-dev amd64 2.4.1-13 [745 kB] -Fetched 34.3 MB in 6s (5859 kB/s) +Fetched 34.3 MB in 9s (4026 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) @@ -449,7 +481,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbpp-popgen-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-popgen_2.4.1-11_source.changes +I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbpp-popgen-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbpp-popgen_2.4.1-11_source.changes dpkg-buildpackage: info: source package libbpp-popgen dpkg-buildpackage: info: source version 2.4.1-11 dpkg-buildpackage: info: source distribution unstable @@ -489,8 +525,8 @@ -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) --- Configuring done (1.0s) --- Generating done (0.3s) +-- Configuring done (1.3s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -501,7 +537,7 @@ -- Build files have been written to: /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-popgen-2.4.1 -B/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -520,89 +556,91 @@ make[3]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' [ 3%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -[ 3%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -[ 8%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o +[ 6%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o +[ 16%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o +[ 29%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o +[ 30%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp -[ 12%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -[ 12%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -[ 12%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -[ 14%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -[ 16%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -[ 19%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -[ 24%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -[ 24%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp -[ 27%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -[ 32%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o -[ 32%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -[ 33%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp -[ 37%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -[ 37%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/BasicAlleleInfo.cpp -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp -[ 38%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Date.cpp +[ 41%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o +[ 45%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp +[ 51%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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-Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp +[ 69%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/GeneralExceptions.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -617,9 +655,8 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' -[ 69%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -632,15 +669,12 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp -[ 72%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -[ 72%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp -[ 74%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o +[ 70%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/LocusInfo.cpp +[ 72%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40: +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -653,6 +687,8 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' +[ 74%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -669,27 +705,16 @@ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' [ 75%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MonolocusGenotypeTools.cpp -[ 77%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp -[ 79%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o +[ 77%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' +[ 79%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp +[ 80%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp +[ 82%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp +[ 83%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, @@ -710,14 +735,54 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -736,8 +801,8 @@ from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -750,8 +815,26 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' -[ 80%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, @@ -771,7 +854,6 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -[ 82%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, @@ -780,6 +862,17 @@ 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ @@ -788,48 +881,26 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp -[ 83%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, @@ -850,10 +921,31 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.cpp:41: + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -885,21 +977,6 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, @@ -915,11 +992,30 @@ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: note: remove the '< >' /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, @@ -940,46 +1036,6 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' -[ 85%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp -[ 87%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.cpp:41: @@ -995,26 +1051,6 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genetix/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, @@ -1035,54 +1071,33 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 73 | Locality(const std::string name, const T x = 0, const T y = 0) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 83 | Locality(const std::string name, const bpp::Point2D &coord) : - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 90 | virtual ~Locality() {} - | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Genepop/../../Locality.h:90:11: note: remove the '< >' -In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:58, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40: -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:73:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 83 | Locality(const std::string name, const bpp::Point2D &coord) : | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:83:14: note: remove the '< >' -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 90 | virtual ~Locality() {} | ^ -/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Locality.h:90:11: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/Darwin/../../Locality.h:90:11: note: remove the '< >' In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Individual.h:58, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Group.h:57, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43, from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52, - from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40: + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41: /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 73 | Locality(const std::string name, const T x = 0, const T y = 0) : | ^ @@ -1095,27 +1110,48 @@ 90 | virtual ~Locality() {} | ^ /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Io/../Locality.h:90:11: note: remove the '< >' -[ 88%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o +In file included from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Individual.h:58, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Group.h:57, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSet.h:53, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.h:54, + from /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40: +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 73 | Locality(const std::string name, const T x = 0, const T y = 0) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:73:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 83 | Locality(const std::string name, const bpp::Point2D &coord) : + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:83:14: note: remove the '< >' +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 90 | virtual ~Locality() {} + | ^ +/build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/DataSet/Locality.h:90:11: note: remove the '< >' +[ 87%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o +[ 87%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotype.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp -[ 90%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -[ 91%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp +[ 88%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp +[ 90%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o [ 93%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o +[ 93%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o [ 95%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp +cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/build/reproducible-path/libbpp-popgen-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /build/reproducible-path/libbpp-popgen-2.4.1/src/Bpp/PopGen/SequenceStatistics.cpp [ 98%] Linking CXX shared library libbpp-popgen.so cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/bpp-popgen-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-popgen.so.8 -o libbpp-popgen.so.8.0.0 "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" 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"CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-popgen.so.8.0.0 libbpp-popgen.so.8 libbpp-popgen.so -make[3]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' -[ 98%] Built target bpp-popgen-shared [100%] Linking CXX static library libbpp-popgen.a cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-popgen-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-static.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-popgen-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/bpp-popgen-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-popgen.so.8 -o libbpp-popgen.so.8.0.0 "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o" 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directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' +[100%] Built target bpp-popgen-shared /usr/bin/ar qc libbpp-popgen.a "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" 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DESTDIR=/build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-popgen-2.4.1 -B/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1145,48 +1181,48 @@ -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotype.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/LocusInfo.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotypeTools.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/AlleleInfo.h --- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h +-- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets.cmake -- Installing: /build/reproducible-path/libbpp-popgen-2.4.1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-popgen-2.4.1/obj-x86_64-linux-gnu' @@ -1245,12 +1281,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3426529/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3775411 and its subdirectories -I: Current time: Tue Aug 5 18:15:18 -12 2025 -I: pbuilder-time-stamp: 1754460918 +I: removing directory /srv/workspace/pbuilder/3426529 and its subdirectories +I: Current time: Wed Sep 9 02:40:05 +14 2026 +I: pbuilder-time-stamp: 1788871205 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libbpp-popgen_2.4.1-11.diff: 94.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libbpp-popgen_2.4.1-11.diff.gz b2/build.log: 91.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 91.8% -- replaced with stdout Wed Aug 6 06:17:09 UTC 2025 I: diffoscope 303 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libbpp-popgen_trixie_amd64_1754461029 + touch /var/log/reproducible-builds/diffoscope_stamp_libbpp-popgen_trixie_amd64_1754461029 + RESULT=0 + systemd-run '--description=diffoscope on libbpp-popgen/2.4.1-11 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_3-63628 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31 --run-session -c jenkins-reproducible-trixie-diffoscope-e86d3945-78ac-495a-a35e-b09cf63042ec -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/dbd-tmp-lXlyY73 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/libbpp-popgen_2.4.1-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/libbpp-popgen_2.4.1-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/libbpp-popgen_2.4.1-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b1/libbpp-popgen_2.4.1-11_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b2/libbpp-popgen_2.4.1-11_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_3-63628.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/libbpp-popgen_2.4.1-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/libbpp-popgen_2.4.1-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/libbpp-popgen_2.4.1-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b1/libbpp-popgen_2.4.1-11_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.63dOyz31/b2/libbpp-popgen_2.4.1-11_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 165ms CPU time consumed: 166ms _ _ _ _ | (_) |__ | |__ _ __ _ __ _ __ ___ _ __ __ _ ___ _ __ | | | '_ \| '_ \| '_ \| '_ \ _____| '_ \ / _ \| '_ \ / _` |/ _ \ '_ \ | | | |_) | |_) | |_) | |_) |_____| |_) | (_) | |_) | (_| | __/ | | | |_|_|_.__/|_.__/| .__/| .__/ | .__/ \___/| .__/ \__, |\___|_| |_| |_| |_| |_| |_| |___/ Wed Aug 6 06:17:09 UTC 2025 I: diffoscope 303 found no differences in the changes files, and a .buildinfo file also exists. Wed Aug 6 06:17:09 UTC 2025 I: libbpp-popgen from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-08-06 06:17:09] INFO: Starting at 2025-08-06 06:17:09.888137 [2025-08-06 06:17:09] INFO: Generating the pages of 1 package(s) [2025-08-06 06:17:10] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/libbpp-popgen didn't produce a buildlog, even though it has been built. [2025-08-06 06:17:10] INFO: Finished at 2025-08-06 06:17:10.035404, took: 0:00:00.147269 Wed Aug 6 06:17:10 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/libbpp-popgen.html Wed Aug 6 06:17:10 UTC 2025 I: Removing signed libbpp-popgen_2.4.1-11_amd64.buildinfo.asc files: removed './b1/libbpp-popgen_2.4.1-11_amd64.buildinfo.asc' removed './b2/libbpp-popgen_2.4.1-11_amd64.buildinfo.asc' 1754461030 amd64 trixie libbpp-popgen Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbpp-popgen_2.4.1-11.rbuild.log: 90.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbpp-popgen_2.4.1-11.rbuild.log.gz [2025-08-06 06:17:10] INFO: Starting at 2025-08-06 06:17:10.319731 [2025-08-06 06:17:10] INFO: Generating the pages of 1 package(s) [2025-08-06 06:17:10] INFO: Finished at 2025-08-06 06:17:10.551279, took: 0:00:00.231554 All cleanup done. Wed Aug 6 06:17:10 UTC 2025 - total duration: 0h 3m 38s. Wed Aug 6 06:17:10 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-5wVotZ7x, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 39.024s CPU time consumed: 4.481s