Running as unit: rb-build-amd64_30-39935.service ==================================================================================== Wed Apr 23 13:35:36 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_30) on jenkins, called using "ionos15-amd64 ionos1-amd64" as arguments. Wed Apr 23 13:35:36 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-NlannlPQ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Apr 23 13:35:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Apr 23 13:35:36 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-2cBRAr' Wed Apr 23 13:35:37 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Wed Apr 23 13:35:37 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-NOrHrX' ok, let's check if soapdenovo is building anywhere yet… ok, soapdenovo is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of soapdenovo in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Wed Apr 23 13:35:53 UTC 2025 I: starting to build soapdenovo/unstable/amd64 on jenkins on '2025-04-23 13:35' Wed Apr 23 13:35:53 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_30/39935/console.log 1745415353 amd64 unstable soapdenovo Wed Apr 23 13:35:53 UTC 2025 I: Downloading source for unstable/soapdenovo=1.05-6 --2025-04-23 13:35:53-- http://deb.debian.org/debian/pool/main/s/soapdenovo/soapdenovo_1.05-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2050 (2.0K) [text/prs.lines.tag] Saving to: ‘soapdenovo_1.05-6.dsc’ 0K .. 100% 356M=0s 2025-04-23 13:35:53 (356 MB/s) - ‘soapdenovo_1.05-6.dsc’ saved [2050/2050] --2025-04-23 13:35:53-- http://deb.debian.org/debian/pool/main/s/soapdenovo/soapdenovo_1.05-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2050 (2.0K) [text/prs.lines.tag] Saving to: ‘soapdenovo_1.05-6.dsc’ 0K .. 100% 356M=0s 2025-04-23 13:35:53 (356 MB/s) - ‘soapdenovo_1.05-6.dsc’ saved [2050/2050] Wed Apr 23 13:35:53 UTC 2025 I: soapdenovo_1.05-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: soapdenovo Binary: soapdenovo Architecture: any-amd64 any-ppc64 any-ia64 Version: 1.05-6 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: http://soap.genomics.org.cn/soapdenovo.html Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/soapdenovo Vcs-Git: https://salsa.debian.org/med-team/soapdenovo.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), rename Package-List: soapdenovo deb science optional arch=any-amd64,any-ppc64,any-ia64 Checksums-Sha1: e7d8fc337de43cc6b96b2b24acbe5454cf0eadfe 377640 soapdenovo_1.05.orig.tar.gz 211390b0b1629a191a3a6a18c2b7ee3e9ec1e552 607956 soapdenovo_1.05-6.debian.tar.xz Checksums-Sha256: bb2fcdc0cb2290b8d63f7afdffddf693679dbd8d6d3dd2db136a65f299794cbc 377640 soapdenovo_1.05.orig.tar.gz 905962c0119a78909f70b70d6c449b809dd7f7f4bba96faf193d566e0589e819 607956 soapdenovo_1.05-6.debian.tar.xz Files: f6d16bce2b8233b6fd93c6009dcc40b3 377640 soapdenovo_1.05.orig.tar.gz a5c7ff50d9d4f42448f251cff987377a 607956 soapdenovo_1.05-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+cjZ0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtENwA/9ERJ9sDux/C6IG6Mfndw3uEkbWCPKW31B khoPBO+UeS3DmAPgVY35UB6vAmTdDnnsI6C+EQZv4xO5fP4uZNzi7suEnm+HTkIA Z/8aJN+mz8xY3UX1AXhY5sizk9fNTBzMQpzfV6Q1HChzWmDCJCq46mPlI7v0g1ny LEBVUK+Opjal03jBlDda7dCmsyKGQ54uzaKcxWsV7pIqGsCbaX7GFLjQGWY7kJzB rX0d8jNSFAECx+38d63Ea1eeOeEatEAKKMQujqokU8GlgVjMTqr8yiHk45tTMdAv gYF1uOnR8YPfIhq+u+t3TZqmnCW1uvmo1Nl+cju/Iyg8Z3os/EcNHjTMlkvj7JBS DFHUffM7wkBbrkQvXmmcvPYIDCGDHIUqHimHSJrs8E23C9TqCRXlEnwT//FrRwoF bFUHg2gnbVNLP55144l9o/pm7pmYkm0eKYv7hsSfXdDnmth8Bu8nZqZ/aUQbg5uc l6qbwiF4unAgstwSMguaN2bWhH7q1gFgrxVplQCIZSSnIbPlz44fcyHWpPIcKftI 8HP+kz2iQBoAntiGNdFi3/lQyZw6SilXidQyBcQulJzzittlvYFJSkyRXEo4LBZg Jxgip288Qs6b8X15fuSokmv7+b87AOHBqAV48VyglzZBY8sh53xOFO0TIjo/qkGo A4DFwRe1oq0= =5DQN -----END PGP SIGNATURE----- Wed Apr 23 13:35:53 UTC 2025 I: Checking whether the package is not for us Wed Apr 23 13:35:53 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Wed Apr 23 13:35:53 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Wed Apr 23 13:35:53 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Apr 23 13:35:53 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-dA6dW4' ==================================================================================== Tue May 26 19:58:54 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 soapdenovo unstable /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv 1.05-6" as arguments. Tue May 26 19:58:54 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-JvrvFAZF" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue May 26 19:58:54 UTC 2026 I: Downloading source for unstable/soapdenovo=1.05-6 Reading package lists... NOTICE: 'soapdenovo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapdenovo.git Please use: git clone https://salsa.debian.org/med-team/soapdenovo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 988 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (dsc) [2050 B] Get:2 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (tar) [378 kB] Get:3 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (diff) [608 kB] Fetched 988 kB in 0s (19.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'soapdenovo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapdenovo.git Please use: git clone https://salsa.debian.org/med-team/soapdenovo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 988 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (dsc) [2050 B] Get:2 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (tar) [378 kB] Get:3 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (diff) [608 kB] Fetched 988 kB in 0s (19.6 MB/s) Download complete and in download only mode ============================================================================= Building soapdenovo in unstable on amd64 on ionos15-amd64 now. Date: Tue May 26 19:58:54 UTC 2026 Date UTC: Tue May 26 19:58:54 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue May 26 07:58:55 -12 2026 I: pbuilder-time-stamp: 1779825535 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [soapdenovo_1.05-6.dsc] I: copying [./soapdenovo_1.05.orig.tar.gz] I: copying [./soapdenovo_1.05-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./soapdenovo_1.05-6.dsc: unsupported subcommand dpkg-source: info: extracting soapdenovo in soapdenovo-1.05 dpkg-source: info: unpacking soapdenovo_1.05.orig.tar.gz dpkg-source: info: unpacking soapdenovo_1.05-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_debug_symbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2064805/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8fd8e99834034ee2ad4b92d0799c4119' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2064805' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/pbuilderrc_ViFV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b1 --logfile b1/build.log soapdenovo_1.05-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2064805/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} rename{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 rename all 2.02-1 [21.8 kB] Fetched 11.2 MB in 4s (2529 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package rename. Preparing to unpack .../29-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/soapdenovo-1.05/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapdenovo_1.05-6_source.changes dpkg-buildpackage: info: source package soapdenovo dpkg-buildpackage: info: source version 1.05-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' SOAPdenovo-31mer cleaning done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' SOAPdenovo-63mer cleaning done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' SOAPdenovo-127mer cleaning done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling fib.c... Compiling fibHeap.c... Compiling dfibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlHashCtg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Linking... SOAPdenovo-31mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTip_graph.c... Compiling cutTipPreGraph.c... Compiling dfib.c... Compiling darray.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling node2edge.c... Compiling map.c... Compiling newhash.c... Compiling mem_manager.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlReadFillGap.c... Compiling prlRead2Ctg.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling prlRead2path.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling splitReps.c... Compiling seq.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Linking... SOAPdenovo-63mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Linking... SOAPdenovo-127mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' Installation done. make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/soapdenovo/ make -j42 install DESTDIR=/build/reproducible-path/soapdenovo-1.05/debian/soapdenovo AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' Installation done. make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' dh_install cd debian/soapdenovo/usr/bin/;rename 's/SOAP/soap/' SOAP* make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'soapdenovo-dbgsym' in '../soapdenovo-dbgsym_1.05-6_amd64.deb'. dpkg-deb: building package 'soapdenovo' in '../soapdenovo_1.05-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../soapdenovo_1.05-6_amd64.buildinfo dpkg-genchanges --build=binary -O../soapdenovo_1.05-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2064805 and its subdirectories I: Current time: Tue May 26 08:01:22 -12 2026 I: pbuilder-time-stamp: 1779825682 Tue May 26 20:01:22 UTC 2026 I: Signing ./b1/soapdenovo_1.05-6_amd64.buildinfo as soapdenovo_1.05-6_amd64.buildinfo.asc Tue May 26 20:01:22 UTC 2026 I: Signed ./b1/soapdenovo_1.05-6_amd64.buildinfo as ./b1/soapdenovo_1.05-6_amd64.buildinfo.asc Tue May 26 20:01:22 UTC 2026 - build #1 for soapdenovo/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Tue May 26 20:01:22 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-JvrvFAZF, removing. /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 23 13:38 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 23 13:35 b2 -rw------- 1 jenkins jenkins 3168 Apr 23 13:35 rbuildlog.aSDNVZU -rw-r--r-- 1 jenkins jenkins 2050 Oct 30 2020 soapdenovo_1.05-6.dsc /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b1: total 2452 -rw-r--r-- 1 jenkins jenkins 28518 Apr 23 13:38 build.log -rw-r--r-- 1 jenkins jenkins 895732 Apr 23 13:38 soapdenovo-dbgsym_1.05-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 607956 Apr 23 13:38 soapdenovo_1.05-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2050 Apr 23 13:38 soapdenovo_1.05-6.dsc -rw-r--r-- 1 jenkins jenkins 4909 Apr 23 13:38 soapdenovo_1.05-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5791 Apr 23 13:38 soapdenovo_1.05-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1884 Apr 23 13:38 soapdenovo_1.05-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 944836 Apr 23 13:38 soapdenovo_1.05-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1731 Apr 23 13:38 soapdenovo_1.05-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b2: total 0 Wed Apr 23 13:38:23 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 26 07:58:55 -12 2026 I: pbuilder-time-stamp: 1779825535 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [soapdenovo_1.05-6.dsc] I: copying [./soapdenovo_1.05.orig.tar.gz] I: copying [./soapdenovo_1.05-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./soapdenovo_1.05-6.dsc: unsupported subcommand dpkg-source: info: extracting soapdenovo in soapdenovo-1.05 dpkg-source: info: unpacking soapdenovo_1.05.orig.tar.gz dpkg-source: info: unpacking soapdenovo_1.05-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_debug_symbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2064805/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8fd8e99834034ee2ad4b92d0799c4119' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2064805' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/pbuilderrc_ViFV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b1 --logfile b1/build.log soapdenovo_1.05-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2064805/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} rename{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 rename all 2.02-1 [21.8 kB] Fetched 11.2 MB in 4s (2529 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package rename. Preparing to unpack .../29-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/soapdenovo-1.05/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapdenovo_1.05-6_source.changes dpkg-buildpackage: info: source package soapdenovo dpkg-buildpackage: info: source version 1.05-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' SOAPdenovo-31mer cleaning done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' SOAPdenovo-63mer cleaning done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' SOAPdenovo-127mer cleaning done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling fib.c... Compiling fibHeap.c... Compiling dfibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlHashCtg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Linking... SOAPdenovo-31mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTip_graph.c... Compiling cutTipPreGraph.c... Compiling dfib.c... Compiling darray.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling node2edge.c... Compiling map.c... Compiling newhash.c... Compiling mem_manager.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlReadFillGap.c... Compiling prlRead2Ctg.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling prlRead2path.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling splitReps.c... Compiling seq.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Linking... SOAPdenovo-63mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Linking... SOAPdenovo-127mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' Installation done. make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/soapdenovo/ make -j42 install DESTDIR=/build/reproducible-path/soapdenovo-1.05/debian/soapdenovo AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' Installation done. make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' dh_install cd debian/soapdenovo/usr/bin/;rename 's/SOAP/soap/' SOAP* make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'soapdenovo-dbgsym' in '../soapdenovo-dbgsym_1.05-6_amd64.deb'. dpkg-deb: building package 'soapdenovo' in '../soapdenovo_1.05-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../soapdenovo_1.05-6_amd64.buildinfo dpkg-genchanges --build=binary -O../soapdenovo_1.05-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2064805 and its subdirectories I: Current time: Tue May 26 08:01:22 -12 2026 I: pbuilder-time-stamp: 1779825682 Wed Apr 23 13:38:23 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Wed Apr 23 13:38:23 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Wed Apr 23 13:38:23 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Wed Apr 23 13:38:23 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-TywDMp' ==================================================================================== Wed Apr 23 13:38:25 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "2 soapdenovo unstable /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv 1.05-6" as arguments. Wed Apr 23 13:38:25 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-s7lzWvGf" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Apr 23 13:38:25 UTC 2025 I: Downloading source for unstable/soapdenovo=1.05-6 Reading package lists... NOTICE: 'soapdenovo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapdenovo.git Please use: git clone https://salsa.debian.org/med-team/soapdenovo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 988 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (dsc) [2050 B] Get:2 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (tar) [378 kB] Get:3 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (diff) [608 kB] Fetched 988 kB in 0s (12.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'soapdenovo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapdenovo.git Please use: git clone https://salsa.debian.org/med-team/soapdenovo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 988 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (dsc) [2050 B] Get:2 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (tar) [378 kB] Get:3 http://deb.debian.org/debian unstable/main soapdenovo 1.05-6 (diff) [608 kB] Fetched 988 kB in 0s (12.0 MB/s) Download complete and in download only mode ============================================================================= Re-Building soapdenovo in unstable on amd64 on ionos1-amd64 now. Date: Wed Apr 23 13:38:25 UTC 2025 Date UTC: Wed Apr 23 13:38:25 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/pbuilderrc_SOiP + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' soapdenovo = debian-installer -o soapdenovo = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' soapdenovo = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/pbuilderrc_SOiP --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b2 --logfile b2/build.log soapdenovo_1.05-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 24 03:38:26 +14 2025 I: pbuilder-time-stamp: 1745415506 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [soapdenovo_1.05-6.dsc] I: copying [./soapdenovo_1.05.orig.tar.gz] I: copying [./soapdenovo_1.05-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./soapdenovo_1.05-6.dsc: unsupported subcommand dpkg-source: info: extracting soapdenovo in soapdenovo-1.05 dpkg-source: info: unpacking soapdenovo_1.05.orig.tar.gz dpkg-source: info: unpacking soapdenovo_1.05-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_debug_symbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 23 13:38 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=5debaac857044c90a9c84b9681bed745 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2136698 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/pbuilderrc_SOiP --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b2 --logfile b2/build.log soapdenovo_1.05-6.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} rename{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 rename all 2.02-1 [21.8 kB] Fetched 11.2 MB in 5s (2286 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package rename. Preparing to unpack .../29-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/soapdenovo-1.05/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../soapdenovo_1.05-6_source.changes dpkg-buildpackage: info: source package soapdenovo dpkg-buildpackage: info: source version 1.05-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j40 clean make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' SOAPdenovo-31mer cleaning done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' SOAPdenovo-63mer cleaning done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' SOAPdenovo-127mer cleaning done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j40 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... Linking... SOAPdenovo-31mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling pregraph.c... Compiling output_scaffold.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... Linking... SOAPdenovo-63mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... Linking... SOAPdenovo-127mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' Installation done. make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/soapdenovo/ make -j40 install DESTDIR=/build/reproducible-path/soapdenovo-1.05/debian/soapdenovo AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' Installation done. make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' dh_install cd debian/soapdenovo/usr/bin/;rename 's/SOAP/soap/' SOAP* make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'soapdenovo' in '../soapdenovo_1.05-6_amd64.deb'. dpkg-deb: building package 'soapdenovo-dbgsym' in '../soapdenovo-dbgsym_1.05-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../soapdenovo_1.05-6_amd64.buildinfo dpkg-genchanges --build=binary -O../soapdenovo_1.05-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2136698 and its subdirectories I: Current time: Thu Apr 24 03:40:10 +14 2025 I: pbuilder-time-stamp: 1745415610 + false + set +x Wed Apr 23 13:40:10 UTC 2025 I: Signing ./b2/soapdenovo_1.05-6_amd64.buildinfo as soapdenovo_1.05-6_amd64.buildinfo.asc Wed Apr 23 13:40:10 UTC 2025 I: Signed ./b2/soapdenovo_1.05-6_amd64.buildinfo as ./b2/soapdenovo_1.05-6_amd64.buildinfo.asc Wed Apr 23 13:40:10 UTC 2025 - build #2 for soapdenovo/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Wed Apr 23 13:40:10 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-s7lzWvGf, removing. /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv: total 44 drwxr-xr-x 2 jenkins jenkins 4096 Apr 23 13:38 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 23 13:40 b2 -rw------- 1 jenkins jenkins 31973 Apr 23 13:38 rbuildlog.aSDNVZU -rw-r--r-- 1 jenkins jenkins 2050 Oct 30 2020 soapdenovo_1.05-6.dsc /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b1: total 2464 -rw-r--r-- 1 jenkins jenkins 28518 Apr 23 13:38 build.log -rw-r--r-- 1 jenkins jenkins 895732 Apr 23 13:38 soapdenovo-dbgsym_1.05-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 607956 Apr 23 13:38 soapdenovo_1.05-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2050 Apr 23 13:38 soapdenovo_1.05-6.dsc -rw-r--r-- 1 jenkins jenkins 4909 Apr 23 13:38 soapdenovo_1.05-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5791 Apr 23 13:38 soapdenovo_1.05-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1884 Apr 23 13:38 soapdenovo_1.05-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 944836 Apr 23 13:38 soapdenovo_1.05-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1731 Apr 23 13:38 soapdenovo_1.05-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b2: total 2456 -rw-r--r-- 1 jenkins jenkins 30436 Apr 23 13:40 build.log -rw-r--r-- 1 jenkins jenkins 895732 Apr 23 13:40 soapdenovo-dbgsym_1.05-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 607956 Apr 23 13:40 soapdenovo_1.05-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2050 Apr 23 13:40 soapdenovo_1.05-6.dsc -rw-r--r-- 1 jenkins jenkins 4898 Apr 23 13:40 soapdenovo_1.05-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5780 Apr 23 13:40 soapdenovo_1.05-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1884 Apr 23 13:40 soapdenovo_1.05-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 944836 Apr 23 13:40 soapdenovo_1.05-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1731 Apr 23 13:40 soapdenovo_1.05-6_source.changes Wed Apr 23 13:40:11 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Wed Apr 23 13:40:11 UTC 2025 I: soapdenovo_1.05-6_amd64.changes: Format: 1.8 Date: Fri, 30 Oct 2020 22:53:04 +0100 Source: soapdenovo Binary: soapdenovo soapdenovo-dbgsym Architecture: amd64 Version: 1.05-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: soapdenovo - short-read assembly method to build de novo draft assembly Changes: soapdenovo (1.05-6) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Use -fcommon option to tolerate "multiple definition of" Checksums-Sha1: 869e81496fb13bbc2d515f25f98e145f1c812883 895732 soapdenovo-dbgsym_1.05-6_amd64.deb df3bbdec631c81f917796f2a24bac5d4aa2e2e39 4909 soapdenovo_1.05-6_amd64.buildinfo b3c940c20eabd6526633e0a61f10cbc2395e1bc8 944836 soapdenovo_1.05-6_amd64.deb Checksums-Sha256: 9f058e684ae0d0ed7bdbe6c553f51412ba8de57c60c8135c16231c63d2c340f2 895732 soapdenovo-dbgsym_1.05-6_amd64.deb fe71e3ec885898edc11dfd402640317edb05041338468c0c5268738269a5c31d 4909 soapdenovo_1.05-6_amd64.buildinfo b5dc20c6b5648153b47bef559becc352714963839da57eb76714215cf161a046 944836 soapdenovo_1.05-6_amd64.deb Files: e54c6187820fb6ef4f0b72bd88ba83dc 895732 debug optional soapdenovo-dbgsym_1.05-6_amd64.deb bfe0fded62c500e467fc1df58d2e72db 4909 science optional soapdenovo_1.05-6_amd64.buildinfo 372bd091acd6446d3b3edf01f03d729b 944836 science optional soapdenovo_1.05-6_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/soapdenovo_1.05-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/soapdenovo_1.05-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/soapdenovo_1.05-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/soapdenovo_1.05-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/soapdenovo_1.05-6_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/soapdenovo_1.05-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-23 13:38:23.162605134 +0000 +++ b2/build.log 2025-04-23 13:40:11.244306663 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 26 07:58:55 -12 2026 -I: pbuilder-time-stamp: 1779825535 +I: Current time: Thu Apr 24 03:38:26 +14 2025 +I: pbuilder-time-stamp: 1745415506 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying add_debug_symbols.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2064805/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 23 13:38 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='8fd8e99834034ee2ad4b92d0799c4119' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2064805' - PS1='# ' - PS2='> ' + INVOCATION_ID=5debaac857044c90a9c84b9681bed745 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2136698 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/pbuilderrc_ViFV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b1 --logfile b1/build.log soapdenovo_1.05-6.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/pbuilderrc_SOiP --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b2 --logfile b2/build.log soapdenovo_1.05-6.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2064805/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -137,7 +169,7 @@ Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 rename all 2.02-1 [21.8 kB] -Fetched 11.2 MB in 4s (2529 kB/s) +Fetched 11.2 MB in 5s (2286 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) @@ -273,7 +305,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/soapdenovo-1.05/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapdenovo_1.05-6_source.changes +I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/soapdenovo-1.05/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../soapdenovo_1.05-6_source.changes dpkg-buildpackage: info: source package soapdenovo dpkg-buildpackage: info: source version 1.05-6 dpkg-buildpackage: info: source distribution unstable @@ -283,7 +319,7 @@ debian/rules clean dh clean dh_auto_clean - make -j42 clean + make -j40 clean make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' SOAPdenovo-31mer cleaning done. @@ -302,37 +338,37 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j42 "INSTALL=install --strip-program=true" + make -j40 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' -Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling fib.c... Compiling fibHeap.c... Compiling dfibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlHashCtg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... map.c: In function 'getMinOverlap.constprop': +Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Linking... SOAPdenovo-31mer compilation done. +Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... Linking... SOAPdenovo-31mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/31mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' -Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTip_graph.c... Compiling cutTipPreGraph.c... Compiling dfib.c... Compiling darray.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling node2edge.c... Compiling map.c... Compiling newhash.c... Compiling mem_manager.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlReadFillGap.c... Compiling prlRead2Ctg.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling prlRead2path.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling splitReps.c... Compiling seq.c... map.c: In function 'getMinOverlap.constprop': +Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling pregraph.c... Compiling output_scaffold.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Linking... SOAPdenovo-63mer compilation done. +Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... Linking... SOAPdenovo-63mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/63mer' make[2]: Entering directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' -Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... map.c: In function 'getMinOverlap.constprop': +Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... map.c: In function 'getMinOverlap.constprop': map.c:40:28: warning: '.preGraphBasic' directive writing 14 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~ map.c:40:9: note: 'sprintf' output between 15 and 270 bytes into a destination of size 256 40 | sprintf ( name, "%s.preGraphBasic", gfile ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Linking... SOAPdenovo-127mer compilation done. +Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... Linking... SOAPdenovo-127mer compilation done. make[2]: Leaving directory '/build/reproducible-path/soapdenovo-1.05/src/127mer' Installation done. make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' @@ -340,7 +376,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/soapdenovo/ - make -j42 install DESTDIR=/build/reproducible-path/soapdenovo-1.05/debian/soapdenovo AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + make -j40 install DESTDIR=/build/reproducible-path/soapdenovo-1.05/debian/soapdenovo AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapdenovo-1.05' Installation done. make[1]: Leaving directory '/build/reproducible-path/soapdenovo-1.05' @@ -366,8 +402,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'soapdenovo-dbgsym' in '../soapdenovo-dbgsym_1.05-6_amd64.deb'. dpkg-deb: building package 'soapdenovo' in '../soapdenovo_1.05-6_amd64.deb'. +dpkg-deb: building package 'soapdenovo-dbgsym' in '../soapdenovo-dbgsym_1.05-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../soapdenovo_1.05-6_amd64.buildinfo dpkg-genchanges --build=binary -O../soapdenovo_1.05-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -375,12 +411,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2136698/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2064805 and its subdirectories -I: Current time: Tue May 26 08:01:22 -12 2026 -I: pbuilder-time-stamp: 1779825682 +I: removing directory /srv/workspace/pbuilder/2136698 and its subdirectories +I: Current time: Thu Apr 24 03:40:10 +14 2025 +I: pbuilder-time-stamp: 1745415610 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/soapdenovo_1.05-6.diff: 84.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/soapdenovo_1.05-6.diff.gz b2/build.log: 80.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.1% -- replaced with stdout Wed Apr 23 13:40:12 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_soapdenovo_unstable_amd64_1745415612 + touch /var/log/reproducible-builds/diffoscope_stamp_soapdenovo_unstable_amd64_1745415612 + RESULT=0 + systemd-run '--description=diffoscope on soapdenovo/1.05-6 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_30-39935 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv --run-session -c jenkins-reproducible-unstable-diffoscope-ee6b83b8-4ddf-4d65-aba4-b05d74b47bc7 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/dbd-tmp-WXdLAg6 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/soapdenovo_1.05-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/soapdenovo_1.05-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/soapdenovo_1.05-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b1/soapdenovo_1.05-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b2/soapdenovo_1.05-6_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_30-39935.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/soapdenovo_1.05-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/soapdenovo_1.05-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/soapdenovo_1.05-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b1/soapdenovo_1.05-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.qeg3OKOv/b2/soapdenovo_1.05-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 228ms CPU time consumed: 229ms _ ___ ___ __ _ _ __ __| | ___ _ __ _____ _____ / __|/ _ \ / _` | '_ \ / _` |/ _ \ '_ \ / _ \ \ / / _ \ \__ \ (_) | (_| | |_) | (_| | __/ | | | (_) \ V / (_) | |___/\___/ \__,_| .__/ \__,_|\___|_| |_|\___/ \_/ \___/ |_| Wed Apr 23 13:40:15 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 23 13:40:15 UTC 2025 I: soapdenovo from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-23 13:40:15] INFO: Starting at 2025-04-23 13:40:15.665893 [2025-04-23 13:40:15] INFO: Generating the pages of 1 package(s) [2025-04-23 13:40:15] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/soapdenovo didn't produce a buildlog, even though it has been built. [2025-04-23 13:40:15] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:15] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:15] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:15] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:15] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:16] INFO: Finished at 2025-04-23 13:40:16.081190, took: 0:00:00.415302 Wed Apr 23 13:40:16 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/soapdenovo.html Wed Apr 23 13:40:16 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Apr 23 13:40:16 UTC 2025 I: Submitting 8.0K b1/soapdenovo_1.05-6_amd64.buildinfo.asc https://buildinfo.debian.net/df3bbdec631c81f917796f2a24bac5d4aa2e2e39/soapdenovo_1.05-6_amd64 Wed Apr 23 13:40:39 UTC 2025 I: Submitting 8.0K b2/soapdenovo_1.05-6_amd64.buildinfo.asc https://buildinfo.debian.net/e47550ca997c770b08a61776e7f3502f0ade86a1/soapdenovo_1.05-6_amd64 Wed Apr 23 13:40:57 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 23 13:40:57 UTC 2025 I: Done submitting .buildinfo files. Wed Apr 23 13:40:57 UTC 2025 I: Removing signed soapdenovo_1.05-6_amd64.buildinfo.asc files: removed './b1/soapdenovo_1.05-6_amd64.buildinfo.asc' removed './b2/soapdenovo_1.05-6_amd64.buildinfo.asc' 1745415657 amd64 unstable soapdenovo Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/soapdenovo_1.05-6.rbuild.log: 76.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/soapdenovo_1.05-6.rbuild.log.gz [2025-04-23 13:40:57] INFO: Starting at 2025-04-23 13:40:57.459719 [2025-04-23 13:40:57] INFO: Generating the pages of 1 package(s) [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/soapdenovo_1.05-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/soapdenovo_1.05-6.diff.gz is missing [2025-04-23 13:40:57] INFO: Finished at 2025-04-23 13:40:57.948692, took: 0:00:00.488986 All cleanup done. Wed Apr 23 13:40:58 UTC 2025 - total duration: 0h 4m 39s. Wed Apr 23 13:40:58 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-NlannlPQ, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 5min 21.214s CPU time consumed: 7.051s