Running as unit: rb-build-amd64_30-58754.service; invocation ID: 2e262fb52924469587b6bef4d37f8ebb ==================================================================================== Mon Sep 15 16:46:43 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_30) on jenkins, called using "ionos15-amd64 ionos1-amd64" as arguments. Mon Sep 15 16:46:43 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-9gkp96kf" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 16:46:43 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Mon Sep 15 16:46:43 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-rsLGn9' Mon Sep 15 16:46:43 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Mon Sep 15 16:46:43 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-mo7eu7' ok, let's check if ncbi-seg is building anywhere yet… ok, ncbi-seg is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of ncbi-seg in forky on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Mon Sep 15 16:46:58 UTC 2025 I: starting to build ncbi-seg/forky/amd64 on jenkins on '2025-09-15 16:46' Mon Sep 15 16:46:58 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_30/58754/console.log 1757954818 amd64 forky ncbi-seg Mon Sep 15 16:46:58 UTC 2025 I: Downloading source for forky/ncbi-seg=0.0.20000620-7 --2025-09-15 16:46:59-- http://deb.debian.org/debian/pool/main/n/ncbi-seg/ncbi-seg_0.0.20000620-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2214 (2.2K) [text/prs.lines.tag] Saving to: ‘ncbi-seg_0.0.20000620-7.dsc’ 0K .. 100% 261M=0s 2025-09-15 16:46:59 (261 MB/s) - ‘ncbi-seg_0.0.20000620-7.dsc’ saved [2214/2214] --2025-09-15 16:46:59-- http://deb.debian.org/debian/pool/main/n/ncbi-seg/ncbi-seg_0.0.20000620-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2214 (2.2K) [text/prs.lines.tag] Saving to: ‘ncbi-seg_0.0.20000620-7.dsc’ 0K .. 100% 261M=0s 2025-09-15 16:46:59 (261 MB/s) - ‘ncbi-seg_0.0.20000620-7.dsc’ saved [2214/2214] Mon Sep 15 16:46:59 UTC 2025 I: ncbi-seg_0.0.20000620-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ncbi-seg Binary: ncbi-seg Architecture: any Version: 0.0.20000620-7 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Pranav Ballaney Homepage: https://ftp.ncbi.nih.gov/pub/seg/seg/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ncbi-seg Vcs-Git: https://salsa.debian.org/med-team/ncbi-seg.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: ncbi-seg deb science optional arch=any Checksums-Sha1: 77e02bb00844c2486a568ae8dcbecdcb537ccee5 86796 ncbi-seg_0.0.20000620.orig.tar.gz abd512c45a425619e16b28a4614f2513c90b70f0 11736 ncbi-seg_0.0.20000620-7.debian.tar.xz Checksums-Sha256: 77f5e92dd2f70ff70459c412a503d32a33f034c52c678ce152cf03149ae293e4 86796 ncbi-seg_0.0.20000620.orig.tar.gz b05aee643b9bbc0c654ff0fbf3113adfa89ecf9a979f5c0458726f96c47059a5 11736 ncbi-seg_0.0.20000620-7.debian.tar.xz Files: 97b66e1c72c6894be7559a72fdcdde7b 86796 ncbi-seg_0.0.20000620.orig.tar.gz ddb90b09f09551ab71526cee9f7cac28 11736 ncbi-seg_0.0.20000620-7.debian.tar.xz Dgit: 2ce23cce57e17a2838b3fafd564d6242e1a354c8 debian archive/debian/0.0.20000620-7 https://git.dgit.debian.org/ncbi-seg -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbUs1IUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrnxBAAsjLC3/LR2CoNy6PYhWre7dvQQTJ0 wCDNelaXInuQOlNcgs2HGLdrJ3jqQ3V4zD05AcsABZHRXNxpVBQfYW70SZetvlWv MeVvuaUMjlimyvMv/dzI0oRfnK1qjA2K2w02ZEjlXjNzSONj4gRKKanoUtmefSC0 8dKfCRUBegCBN5l1k8IETrvts2W+hhgEkujPgkkStv+JIK8gh+mVIJ7R6wAJ6q3y W9EfERRAVppOx06fn7GpWgE1GRXl/8cluBAkMCu4gbOdifqv8LuikVcG6bLq/Ym/ GHpxOQI3PyHvkSF+XPDjBfGVZwEjcI/dndLof+kF4jCM6y8bGFHzPfwJO2xXMVVG 7bbcJN+9QintnAfMkQDXtxMIZ2yV1D2eoRXFwm1tdSEdbtR5XC2DPv3/RJvMKx4Y ezrxBiAuUH84ZhJxtaCxw82kby7iG0kC9lomQZ2BFOWFDgl3BZZYixJa3FgBb62u Q+8dlnXyfqop79EIuGzpiFOGrxYdudU0FbH+aAXdDQX+g+Ue4LoKSiuTYU/bROL2 RTMYizNos+SK75XPBCTSO+qdPdCXd4XB0hBQ7jwpSPXw9B/UCiM1ZRrUETSx8HlI VLhQitVAxHZudOFQ+YcGNC8h2c5zjQIPist6S9yQ5t0ns8mOQ/o8TIjoYPJiBv/7 aGhlA34RUmTShzI= =cEfP -----END PGP SIGNATURE----- Mon Sep 15 16:46:59 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 16:46:59 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Sep 15 16:46:59 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Sep 15 16:46:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Mon Sep 15 16:46:59 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-7hwi5c' ==================================================================================== Sun Oct 18 23:09:59 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 ncbi-seg forky /srv/reproducible-results/rbuild-debian/r-b-build.Th5PH4fg 0.0.20000620-7" as arguments. Sun Oct 18 23:09:59 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-pgz0ADbP" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 23:09:59 UTC 2026 I: Downloading source for forky/ncbi-seg=0.0.20000620-7 Reading package lists... NOTICE: 'ncbi-seg' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ncbi-seg.git Please use: git clone https://salsa.debian.org/med-team/ncbi-seg.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 101 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ncbi-seg 0.0.20000620-7 (dsc) [2214 B] Get:2 http://deb.debian.org/debian forky/main ncbi-seg 0.0.20000620-7 (tar) [86.8 kB] Get:3 http://deb.debian.org/debian forky/main ncbi-seg 0.0.20000620-7 (diff) [11.7 kB] Fetched 101 kB in 0s (8506 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ncbi-seg' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ncbi-seg.git Please use: git clone https://salsa.debian.org/med-team/ncbi-seg.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 101 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ncbi-seg 0.0.20000620-7 (dsc) [2214 B] Get:2 http://deb.debian.org/debian forky/main ncbi-seg 0.0.20000620-7 (tar) [86.8 kB] Get:3 http://deb.debian.org/debian forky/main ncbi-seg 0.0.20000620-7 (diff) [11.7 kB] Fetched 101 kB in 0s (8506 kB/s) Download complete and in download only mode ============================================================================= Building ncbi-seg in forky on amd64 on ionos15-amd64 now. Date: Sun Oct 18 23:09:59 UTC 2026 Date UTC: Sun Oct 18 23:09:59 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 18 11:09:59 -12 2026 I: pbuilder-time-stamp: 1792364999 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ncbi-seg_0.0.20000620-7.dsc] I: copying [./ncbi-seg_0.0.20000620.orig.tar.gz] I: copying [./ncbi-seg_0.0.20000620-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ncbi-seg_0.0.20000620-7.dsc: no acceptable signature found dpkg-source: info: extracting ncbi-seg in ncbi-seg-0.0.20000620 dpkg-source: info: unpacking ncbi-seg_0.0.20000620.orig.tar.gz dpkg-source: info: unpacking ncbi-seg_0.0.20000620-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile dpkg-source: info: applying example dpkg-source: info: applying seg.c dpkg-source: info: applying genwin.c dpkg-source: info: applying autotools dpkg-source: info: applying seg.pod dpkg-source: info: applying clang.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2946653/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c2a8bbfad9b74c109e0abd58deea824e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2946653' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Th5PH4fg/pbuilderrc_URDS --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Th5PH4fg/b1 --logfile b1/build.log ncbi-seg_0.0.20000620-7.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2946653/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Fetched 11.2 MB in 2s (5753 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-seg_0.0.20000620-7_source.changes dpkg-buildpackage: info: source package ncbi-seg dpkg-buildpackage: info: source version 0.0.20000620-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' dh_autoreconf -X./COPYING configure.ac:5: installing './compile' configure.ac:3: installing './install-sh' configure.ac:3: installing './missing' Makefile.am: installing './INSTALL' Makefile.am: installing './depcomp' make[1]: Leaving directory '/build/reproducible-path/ncbi-seg-0.0.20000620' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o seg.o seg.c gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o genwin.o genwin.c sed -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/ncbi-seg|g;s|__pkgdatadir__|/usr/share/ncbi-seg|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|0.0.20000620|g;' "ncbi-seg.pod" | \ pod2man -c 'User Commands' -r "0.0.20000620" -name NCBI-SEG > "ncbi-seg.1" In file included from seg.c:10: genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] 146 | extern closedbase(); | ^~~~~~~~~~ genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] 149 | extern closeseq(); | ^~~~~~~~ genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.h:154:8: warning: type defaults to 'int' in declaration of 'compon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~ genwin.h:154:18: warning: type defaults to 'int' in declaration of 'stateon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~~ genwin.h:154:29: warning: type defaults to 'int' in declaration of 'enton' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~ genwin.h:158:8: warning: type defaults to 'int' in declaration of 'closemat' [-Wimplicit-int] 158 | extern closemat(); | ^~~~~~~~ genwin.h:160:8: warning: type defaults to 'int' in declaration of 'upper' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ In file included from genwin.c:9: genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] 146 | extern closedbase(); | ^~~~~~~~~~ genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] 149 | extern closeseq(); | ^~~~~~~~ genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.h:154:8: warning: type defaults to 'int' in declaration of 'compon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~ genwin.h:154:18: warning: type defaults to 'int' in declaration of 'stateon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~~ genwin.h:154:29: warning: type defaults to 'int' in declaration of 'enton' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~ genwin.h:158:8: warning: type defaults to 'int' in declaration of 'closemat' [-Wimplicit-int] 158 | extern closemat(); | ^~~~~~~~ genwin.h:160:8: warning: type defaults to 'int' in declaration of 'upper' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:62:1: warning: return type defaults to 'int' [-Wimplicit-int] 62 | genwininit() | ^~~~~~~~~~ genwin.c: In function 'opendbase': genwin.c:86:25: warning: old-style function definition [-Wold-style-definition] 86 | extern struct Database *opendbase(name) | ^~~~~~~~~ genwin.c:89:3: error: number of arguments doesn't match prototype 89 | {struct Database *dbase; | ^ genwin.h:145:25: error: prototype declaration 145 | extern struct Database *opendbase(); | ^~~~~~~~~ genwin.c:93:8: warning: implicit declaration of function 'blastdb' [-Wimplicit-function-declaration] 93 | if (blastdb(name)) | ^~~~~~~ genwin.c: In function 'blastdb': genwin.c:129:5: warning: old-style function definition [-Wold-style-definition] 129 | int blastdb(name) | ^~~~~~~ genwin.c: At top level: genwin.c:144:8: warning: return type defaults to 'int' [-Wimplicit-int] 144 | extern closedbase(dbase) | ^~~~~~~~~~ genwin.c: In function 'closedbase': genwin.c:144:8: warning: old-style function definition [-Wold-style-definition] genwin.c:147:3: error: number of arguments doesn't match prototype 147 | { | ^ genwin.h:146:8: error: prototype declaration 146 | extern closedbase(); | ^~~~~~~~~~ genwin.c: In function 'firstseq': genwin.c:158:25: warning: old-style function definition [-Wold-style-definition] 158 | extern struct Sequence *firstseq(dbase) | ^~~~~~~~ genwin.c:161:3: error: number of arguments doesn't match prototype 161 | { | ^ genwin.h:148:37: error: prototype declaration 148 | extern struct Sequence *openseq(), *firstseq(), *nextseq(); | ^~~~~~~~ genwin.c:171:11: error: too many arguments to function 'readentry'; expected 0, have 1 171 | return(readentry(dbase)); | ^~~~~~~~~ ~~~~~ genwin.c:17:18: note: declared here 17 | struct Sequence *readentry(); | ^~~~~~~~~ genwin.c: In function 'nextseq': genwin.c:176:25: warning: old-style function definition [-Wold-style-definition] 176 | extern struct Sequence *nextseq(dbase) | ^~~~~~~ genwin.c:179:3: error: number of arguments doesn't match prototype 179 | { | ^ genwin.h:148:50: error: prototype declaration 148 | extern struct Sequence *openseq(), *firstseq(), *nextseq(); | ^~~~~~~ genwin.c:180:11: error: too many arguments to function 'readentry'; expected 0, have 1 180 | return(readentry(dbase)); | ^~~~~~~~~ ~~~~~ genwin.c:17:18: note: declared here 17 | struct Sequence *readentry(); | ^~~~~~~~~ genwin.c: At top level: genwin.c:185:8: warning: return type defaults to 'int' [-Wimplicit-int] 185 | extern closeseq(seq) | ^~~~~~~~ genwin.c: In function 'closeseq': genwin.c:185:8: warning: old-style function definition [-Wold-style-definition] genwin.c:188:3: error: number of arguments doesn't match prototype 188 | { | ^ genwin.h:149:8: error: prototype declaration 149 | extern closeseq(); | ^~~~~~~~ genwin.c: In function 'openwin': genwin.c:204:25: warning: old-style function definition [-Wold-style-definition] 204 | extern struct Sequence *openwin(parent, start, length) | ^~~~~~~ genwin.c:208:3: error: number of arguments doesn't match prototype 208 | {struct Sequence *win; | ^ genwin.h:151:25: error: prototype declaration 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ genwin.c:262:9: error: too many arguments to function 'stateon'; expected 0, have 1 262 | stateon(win); | ^~~~~~~ ~~~ genwin.h:154:18: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~~~ genwin.c: In function 'nextwin': genwin.c:269:25: warning: old-style function definition [-Wold-style-definition] 269 | extern struct Sequence *nextwin(win, shift) | ^~~~~~~ genwin.c:273:3: error: number of arguments doesn't match prototype 273 | { | ^ genwin.h:151:37: error: prototype declaration 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ genwin.c:281:14: error: too many arguments to function 'openwin'; expected 0, have 3 281 | return(openwin(win->parent, win->start+shift, win->length)); | ^~~~~~~ ~~~~~~~~~~~ genwin.c:204:25: note: declared here 204 | extern struct Sequence *openwin(parent, start, length) | ^~~~~~~ genwin.c: In function 'shiftwin1': genwin.c:288:12: warning: old-style function definition [-Wold-style-definition] 288 | extern int shiftwin1(win) | ^~~~~~~~~ genwin.c:303:17: error: too many arguments to function 'decrementsv'; expected 0, have 2 303 | decrementsv(win->state, comp[aaindex[j]]--); | ^~~~~~~~~~~ ~~~~~~~~~~ genwin.c:286:17: note: declared here 286 | static void decrementsv(), incrementsv(); | ^~~~~~~~~~~ genwin.c:309:17: error: too many arguments to function 'incrementsv'; expected 0, have 2 309 | incrementsv(win->state, comp[aaindex[j]]++); | ^~~~~~~~~~~ ~~~~~~~~~~ genwin.c:286:32: note: declared here 286 | static void decrementsv(), incrementsv(); | ^~~~~~~~~~~ genwin.c:312:32: error: too many arguments to function 'entropy'; expected 0, have 1 312 | win->entropy = entropy(win->state); | ^~~~~~~ ~~~~~~~~~~ genwin.h:155:15: note: declared here 155 | extern double entropy(); | ^~~~~~~ genwin.c: At top level: genwin.c:319:8: warning: return type defaults to 'int' [-Wimplicit-int] 319 | extern closewin(win) | ^~~~~~~~ genwin.c: In function 'closewin': genwin.c:319:8: warning: old-style function definition [-Wold-style-definition] genwin.c:322:3: error: number of arguments doesn't match prototype 322 | { | ^ genwin.h:152:20: error: prototype declaration 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.c: At top level: genwin.c:336:8: warning: return type defaults to 'int' [-Wimplicit-int] 336 | extern compon(win) | ^~~~~~ genwin.c: In function 'compon': genwin.c:336:8: warning: old-style function definition [-Wold-style-definition] genwin.c:338:1: error: number of arguments doesn't match prototype 338 | { | ^ genwin.h:154:8: error: prototype declaration 154 | extern compon(), stateon(), enton(); | ^~~~~~ genwin.c: In function 'state_cmp': genwin.c:358:12: warning: old-style function definition [-Wold-style-definition] 358 | static int state_cmp(s1, s2) | ^~~~~~~~~ genwin.c: At top level: genwin.c:364:8: warning: return type defaults to 'int' [-Wimplicit-int] 364 | extern stateon(win) | ^~~~~~~ genwin.c: In function 'stateon': genwin.c:364:8: warning: old-style function definition [-Wold-style-definition] genwin.c:366:1: error: number of arguments doesn't match prototype 366 | { | ^ genwin.h:154:18: error: prototype declaration 154 | extern compon(), stateon(), enton(); | ^~~~~~~ genwin.c:370:17: error: too many arguments to function 'compon'; expected 0, have 1 370 | compon(win); | ^~~~~~ ~~~ genwin.c:336:8: note: declared here 336 | extern compon(win) | ^~~~~~ genwin.c: At top level: genwin.c:389:8: warning: return type defaults to 'int' [-Wimplicit-int] 389 | extern enton(win) | ^~~~~ genwin.c: In function 'enton': genwin.c:389:8: warning: old-style function definition [-Wold-style-definition] genwin.c:392:3: error: number of arguments doesn't match prototype 392 | { | ^ genwin.h:154:29: error: prototype declaration 154 | extern compon(), stateon(), enton(); | ^~~~~ genwin.c:393:27: error: too many arguments to function 'stateon'; expected 0, have 1 393 | if (win->state==NULL) {stateon(win);} | ^~~~~~~ ~~~ genwin.c:364:8: note: declared here 364 | extern stateon(win) | ^~~~~~~ genwin.c:395:19: error: too many arguments to function 'entropy'; expected 0, have 1 395 | win->entropy = entropy(win->state); | ^~~~~~~ ~~~~~~~~~~ genwin.h:155:15: note: declared here 155 | extern double entropy(); | ^~~~~~~ genwin.c: In function 'entropy_init': genwin.c:407:1: warning: old-style function definition [-Wold-style-definition] 407 | entropy_init(window) | ^~~~~~~~~~~~ genwin.c: In function 'entropy': genwin.c:423:15: warning: old-style function definition [-Wold-style-definition] 423 | extern double entropy(sv) | ^~~~~~~ genwin.c:425:1: error: number of arguments doesn't match prototype 425 | { | ^ genwin.h:155:15: error: prototype declaration 155 | extern double entropy(); | ^~~~~~~ genwin.c: In function 'decrementsv': genwin.c:456:1: warning: old-style function definition [-Wold-style-definition] 456 | decrementsv(sv, class) | ^~~~~~~~~~~ genwin.c: In function 'incrementsv': genwin.c:473:1: warning: old-style function definition [-Wold-style-definition] 473 | incrementsv(sv, class) | ^~~~~~~~~~~ genwin.c: In function 'readentry': genwin.c:487:18: warning: old-style function definition [-Wold-style-definition] 487 | struct Sequence *readentry(dbase) | ^~~~~~~~~ genwin.c:490:3: error: number of arguments doesn't match prototype 490 | {struct Sequence *seq; | ^ genwin.c:17:18: error: prototype declaration 17 | struct Sequence *readentry(); | ^~~~~~~~~ genwin.c:510:9: warning: implicit declaration of function 'readhdr' [-Wimplicit-function-declaration] 510 | if (!readhdr(seq)) | ^~~~~~~ genwin.c:528:4: warning: implicit declaration of function 'readseq' [-Wimplicit-function-declaration] 528 | readseq(seq); | ^~~~~~~ genwin.c: At top level: genwin.c:545:1: warning: return type defaults to 'int' [-Wimplicit-int] 545 | readhdr(seq) | ^~~~~~~ genwin.c: In function 'readhdr': genwin.c:545:1: warning: old-style function definition [-Wold-style-definition] genwin.c:613:12: error: too many arguments to function 'findchar'; expected 0, have 2 613 | idend = findchar(bptr, ' '); | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:614:28: error: too many arguments to function 'findchar'; expected 0, have 2 614 | if (idend==-1) {idend = findchar(bptr, '\n');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:615:28: error: too many arguments to function 'findchar'; expected 0, have 2 615 | if (idend==-1) {idend = findchar(bptr, '\0');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:631:13: error: too many arguments to function 'findchar'; expected 0, have 2 631 | namend = findchar(bptr, '-'); | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:632:30: error: too many arguments to function 'findchar'; expected 0, have 2 632 | if (namend==-1) {namend = findchar(bptr, '\n');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:633:30: error: too many arguments to function 'findchar'; expected 0, have 2 633 | if (namend==-1) {namend = findchar(bptr, '\0');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:649:13: error: too many arguments to function 'findchar'; expected 0, have 2 649 | orgend = findchar(bptr, '|'); | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:650:30: error: too many arguments to function 'findchar'; expected 0, have 2 650 | if (orgend==-1) {orgend = findchar(bptr, '#');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:651:30: error: too many arguments to function 'findchar'; expected 0, have 2 651 | if (orgend==-1) {orgend = findchar(bptr, '\n');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:652:30: error: too many arguments to function 'findchar'; expected 0, have 2 652 | if (orgend==-1) {orgend = findchar(bptr, '\0');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:670:10: warning: implicit declaration of function 'skipline' [-Wimplicit-function-declaration] 670 | skipline(fp); | ^~~~~~~~ genwin.c: At top level: genwin.c:684:1: warning: return type defaults to 'int' [-Wimplicit-int] 684 | skipline(fp) | ^~~~~~~~ genwin.c: In function 'skipline': genwin.c:684:1: warning: old-style function definition [-Wold-style-definition] genwin.c: In function 'findchar': genwin.c:697:12: warning: old-style function definition [-Wold-style-definition] 697 | extern int findchar(str, chr) | ^~~~~~~~ genwin.c:701:3: error: number of arguments doesn't match prototype 701 | {int i; | ^ genwin.h:160:26: error: prototype declaration 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c: At top level: genwin.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int] 718 | readseq(seq) | ^~~~~~~ genwin.c: In function 'readseq': genwin.c:718:1: warning: old-style function definition [-Wold-style-definition] genwin.c: At top level: genwin.c:794:8: warning: return type defaults to 'int' [-Wimplicit-int] 794 | extern upper(string, len) | ^~~~~ genwin.c: In function 'upper': genwin.c:794:8: warning: old-style function definition [-Wold-style-definition] genwin.c:797:1: error: number of arguments doesn't match prototype 797 | { | ^ genwin.h:160:8: error: prototype declaration 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.c: At top level: genwin.c:807:8: warning: return type defaults to 'int' [-Wimplicit-int] 807 | extern lower(string, len) | ^~~~~ genwin.c: In function 'lower': genwin.c:807:8: warning: old-style function definition [-Wold-style-definition] genwin.c:810:1: error: number of arguments doesn't match prototype 810 | { | ^ genwin.h:160:17: error: prototype declaration 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.c: In function 'min': genwin.c:820:5: warning: old-style function definition [-Wold-style-definition] 820 | int min(a, b) | ^~~ genwin.c: In function 'max': genwin.c:830:5: warning: old-style function definition [-Wold-style-definition] 830 | int max(a, b) | ^~~ genwin.c: In function 'tmalloc': genwin.c:842:7: warning: old-style function definition [-Wold-style-definition] 842 | void *tmalloc(size) | ^~~~~~~ genwin.c:845:3: error: number of arguments doesn't match prototype 845 | {void *ptr; | ^ genwin.c:56:7: error: prototype declaration 56 | void *tmalloc(); | ^~~~~~~ genwin.c: At top level: genwin.c:862:1: warning: return type defaults to 'int' [-Wimplicit-int] 862 | tfree(ptr) | ^~~~~ genwin.c: In function 'tfree': genwin.c:862:1: warning: old-style function definition [-Wold-style-definition] seg.c:49:1: warning: return type defaults to 'int' [-Wimplicit-int] 49 | main(argc, argv) | ^~~~ seg.c: In function 'main': seg.c:49:1: warning: old-style function definition [-Wold-style-definition] seg.c:58:4: warning: implicit declaration of function 'genwininit' [-Wimplicit-function-declaration] 58 | genwininit(); | ^~~~~~~~~~ seg.c:60:4: warning: implicit declaration of function 'getparams' [-Wimplicit-function-declaration] 60 | getparams(argc, argv); | ^~~~~~~~~ seg.c:61:4: warning: implicit declaration of function 'entropy_init' [-Wimplicit-function-declaration] 61 | entropy_init(window); | ^~~~~~~~~~~~ seg.c:63:12: error: too many arguments to function 'opendbase'; expected 0, have 1 63 | if ((db=opendbase(argv[1]))==NULL) | ^~~~~~~~~ ~~~~~~~ genwin.h:145:25: note: declared here 145 | extern struct Database *opendbase(); | ^~~~~~~~~ seg.c:69:13: error: too many arguments to function 'firstseq'; expected 0, have 1 69 | for (seq=firstseq(db); seq!=NULL; seq=nextseq(db)) | ^~~~~~~~ ~~ genwin.h:148:37: note: declared here 148 | extern struct Sequence *openseq(), *firstseq(), *nextseq(); | ^~~~~~~~ seg.c:69:42: error: too many arguments to function 'nextseq'; expected 0, have 1 69 | for (seq=firstseq(db); seq!=NULL; seq=nextseq(db)) | ^~~~~~~ ~~ genwin.h:148:50: note: declared here 148 | extern struct Sequence *openseq(), *firstseq(), *nextseq(); | ^~~~~~~ seg.c:72:7: warning: implicit declaration of function 'segseq' [-Wimplicit-function-declaration] 72 | segseq(seq, &segs, 0); | ^~~~~~ seg.c:73:7: warning: implicit declaration of function 'mergesegs' [-Wimplicit-function-declaration] 73 | mergesegs(seq, segs); | ^~~~~~~~~ seg.c:75:22: warning: implicit declaration of function 'singreport' [-Wimplicit-function-declaration] 75 | if (singleseq) singreport(seq, segs); | ^~~~~~~~~~ seg.c:76:27: warning: implicit declaration of function 'prettyreport' [-Wimplicit-function-declaration] 76 | else if (prettyseq) prettyreport(seq, segs); | ^~~~~~~~~~~~ seg.c:77:28: warning: implicit declaration of function 'pretreereport' [-Wimplicit-function-declaration] 77 | else if (prettytree) pretreereport(seq, segs); | ^~~~~~~~~~~~~ seg.c:78:12: warning: implicit declaration of function 'report' [-Wimplicit-function-declaration] 78 | else report(seq, segs); | ^~~~~~ seg.c:80:7: warning: implicit declaration of function 'freesegs' [-Wimplicit-function-declaration] 80 | freesegs(segs); | ^~~~~~~~ seg.c:81:7: error: too many arguments to function 'closeseq'; expected 0, have 1 81 | closeseq(seq); | ^~~~~~~~ ~~~ genwin.h:149:8: note: declared here 149 | extern closeseq(); | ^~~~~~~~ seg.c:84:4: error: too many arguments to function 'closedbase'; expected 0, have 1 84 | closedbase(db); | ^~~~~~~~~~ ~~ genwin.h:146:8: note: declared here 146 | extern closedbase(); | ^~~~~~~~~~ seg.c: At top level: seg.c:90:1: warning: return type defaults to 'int' [-Wimplicit-int] 90 | getparams(argc, argv) | ^~~~~~~~~ seg.c: In function 'getparams': seg.c:90:1: warning: old-style function definition [-Wold-style-definition] seg.c:103:7: warning: implicit declaration of function 'usage' [-Wimplicit-function-declaration] 103 | usage(); | ^~~~~ seg.c:137:14: warning: implicit declaration of function 'getopt'; did you mean 'getsubopt'? [-Wimplicit-function-declaration] 137 | while ((c=getopt(nargc, nargv, "m:olhaxpqc:nt:"))!=-1) | ^~~~~~ | getsubopt seg.c: At top level: seg.c:210:1: warning: return type defaults to 'int' [-Wimplicit-int] 210 | segseq(seq, segs, offset) | ^~~~~~ seg.c: In function 'segseq': seg.c:210:1: warning: old-style function definition [-Wold-style-definition] seg.c:222:8: error: too many arguments to function 'seqent'; expected 0, have 1 222 | H = seqent(seq); | ^~~~~~ ~~~ seg.c:220:16: note: declared here 220 | double *H, *seqent(); | ^~~~~~ seg.c:233:16: warning: implicit declaration of function 'findlo' [-Wimplicit-function-declaration] 233 | loi = findlo(i, lowlim, H); | ^~~~~~ seg.c:234:16: warning: implicit declaration of function 'findhi'; did you mean 'findchar'? [-Wimplicit-function-declaration] 234 | hii = findhi(i, last, H); | ^~~~~~ | findchar seg.c:239:10: warning: implicit declaration of function 'trim' [-Wimplicit-function-declaration] 239 | trim(openwin(seq, leftend, rightend-leftend+1), &leftend, &rightend); | ^~~~ seg.c:239:15: error: too many arguments to function 'openwin'; expected 0, have 3 239 | trim(openwin(seq, leftend, rightend-leftend+1), &leftend, &rightend); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:246:23: error: too many arguments to function 'openwin'; expected 0, have 3 246 | leftseq = openwin(seq, lend, rend-lend+1); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:252:21: warning: implicit declaration of function 'appendseg' [-Wimplicit-function-declaration] 252 | else appendseg(*segs, leftsegs); | ^~~~~~~~~ seg.c:254:13: error: too many arguments to function 'closewin'; expected 0, have 1 254 | closewin(leftseq); | ^~~~~~~~ ~~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:273:14: warning: implicit declaration of function 'min'; did you mean 'main'? [-Wimplicit-function-declaration] 273 | i = min(hii, rightend+downset); | ^~~ | main seg.c: In function 'seqent': seg.c:220:16: warning: old-style function definition [-Wold-style-definition] 220 | double *H, *seqent(); | ^~~~~~ seg.c:288:3: error: number of arguments doesn't match prototype 288 | {struct Sequence *win; | ^ seg.c:220:16: error: prototype declaration 220 | double *H, *seqent(); | ^~~~~~ seg.c:304:10: error: too many arguments to function 'openwin'; expected 0, have 3 304 | win = openwin(seq, 0, window); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:305:4: error: too many arguments to function 'enton'; expected 0, have 1 305 | enton(win); | ^~~~~ ~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:312:31: warning: implicit declaration of function 'hasdash' [-Wimplicit-function-declaration] 312 | if (seq->punctuation && hasdash(win)) | ^~~~~~~ seg.c:314:10: warning: implicit declaration of function 'shiftwin1'; did you mean 'shiftwin'? [-Wimplicit-function-declaration] 314 | shiftwin1(win); | ^~~~~~~~~ | shiftwin seg.c:320:4: error: too many arguments to function 'closewin'; expected 0, have 1 320 | closewin(win); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c: At top level: seg.c:326:1: warning: return type defaults to 'int' [-Wimplicit-int] 326 | hasdash(win) | ^~~~~~~ seg.c: In function 'hasdash': seg.c:326:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:343:1: warning: return type defaults to 'int' [-Wimplicit-int] 343 | findlo(i, limit, H) | ^~~~~~ seg.c: In function 'findlo': seg.c:343:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:360:1: warning: return type defaults to 'int' [-Wimplicit-int] 360 | findhi(i, limit, H) | ^~~~~~ seg.c: In function 'findhi': seg.c:360:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:377:1: warning: return type defaults to 'int' [-Wimplicit-int] 377 | trim(seq, leftend, rightend) | ^~~~ seg.c: In function 'trim': seg.c:377:1: warning: old-style function definition [-Wold-style-definition] seg.c:397:13: error: too many arguments to function 'openwin'; expected 0, have 3 397 | win = openwin(seq, 0, len); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:403:17: error: too many arguments to function 'getprob'; expected 0, have 2 403 | prob = getprob(win->state, len); | ^~~~~~~ ~~~~~~~~~~ seg.c:45:8: note: declared here 45 | double getprob(), lnperm(), lnass(); | ^~~~~~~ seg.c:413:7: error: too many arguments to function 'closewin'; expected 0, have 1 413 | closewin(win); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:423:4: error: too many arguments to function 'closewin'; expected 0, have 1 423 | closewin(seq); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c: In function 'getprob': seg.c:429:8: warning: old-style function definition [-Wold-style-definition] 429 | double getprob(sv, total) | ^~~~~~~ seg.c:433:3: error: number of arguments doesn't match prototype 433 | {double ans, totseq; | ^ seg.c:45:8: error: prototype declaration 45 | double getprob(), lnperm(), lnass(); | ^~~~~~~ seg.c:438:10: error: too many arguments to function 'lnass'; expected 0, have 1 438 | ans = lnass(sv) + lnperm(sv, total) - totseq; | ^~~~~ ~~ seg.c:45:29: note: declared here 45 | double getprob(), lnperm(), lnass(); | ^~~~~ seg.c:438:22: error: too many arguments to function 'lnperm'; expected 0, have 2 438 | ans = lnass(sv) + lnperm(sv, total) - totseq; | ^~~~~~ ~~ seg.c:45:19: note: declared here 45 | double getprob(), lnperm(), lnass(); | ^~~~~~ seg.c: In function 'lnperm': seg.c:445:8: warning: old-style function definition [-Wold-style-definition] 445 | double lnperm(sv, tot) | ^~~~~~ seg.c:449:3: error: number of arguments doesn't match prototype 449 | {double ans; | ^ seg.c:45:19: error: prototype declaration 45 | double getprob(), lnperm(), lnass(); | ^~~~~~ seg.c: In function 'lnass': seg.c:464:8: warning: old-style function definition [-Wold-style-definition] 464 | double lnass(sv) | ^~~~~ seg.c:466:1: error: number of arguments doesn't match prototype 466 | { | ^ seg.c:45:29: error: prototype declaration 45 | double getprob(), lnperm(), lnass(); | ^~~~~ seg.c: At top level: seg.c:507:1: warning: return type defaults to 'int' [-Wimplicit-int] 507 | mergesegs(seq, segs) | ^~~~~~~~~ seg.c: In function 'mergesegs': seg.c:507:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:553:1: warning: return type defaults to 'int' [-Wimplicit-int] 553 | report(seq, segs) | ^~~~~~ seg.c: In function 'report': seg.c:553:1: warning: old-style function definition [-Wold-style-definition] seg.c:564:7: error: too many arguments to function 'enton'; expected 0, have 1 564 | enton(seq); | ^~~~~ ~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:565:7: warning: implicit declaration of function 'seqout'; did you mean 'seqent'? [-Wimplicit-function-declaration] 565 | seqout(seq, hi, 1, seq->length); | ^~~~~~ | seqent seg.c:572:16: error: too many arguments to function 'openwin'; expected 0, have 3 572 | subseq = openwin(seq, 0, segs->begin); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:573:7: error: too many arguments to function 'enton'; expected 0, have 1 573 | enton(subseq); | ^~~~~ ~~~~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:575:7: error: too many arguments to function 'closewin'; expected 0, have 1 575 | closewin(subseq); | ^~~~~~~~ ~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:580:16: error: too many arguments to function 'openwin'; expected 0, have 3 580 | subseq = openwin(seq, seg->begin, seg->end-seg->begin+1); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:581:7: error: too many arguments to function 'enton'; expected 0, have 1 581 | enton(subseq); | ^~~~~ ~~~~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:583:7: error: too many arguments to function 'closewin'; expected 0, have 1 583 | closewin(subseq); | ^~~~~~~~ ~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:603:16: error: too many arguments to function 'openwin'; expected 0, have 3 603 | subseq = openwin(seq, seg->end+1, nextseg->begin-seg->end-1); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:604:7: error: too many arguments to function 'enton'; expected 0, have 1 604 | enton(subseq); | ^~~~~ ~~~~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:606:7: error: too many arguments to function 'closewin'; expected 0, have 1 606 | closewin(subseq); | ^~~~~~~~ ~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:615:13: error: too many arguments to function 'openwin'; expected 0, have 3 615 | subseq = openwin(seq, seg->end+1, seq->length-seg->end-1); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:616:4: error: too many arguments to function 'enton'; expected 0, have 1 616 | enton(subseq); | ^~~~~ ~~~~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:618:4: error: too many arguments to function 'closewin'; expected 0, have 1 618 | closewin(subseq); | ^~~~~~~~ ~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c: At top level: seg.c:626:1: warning: return type defaults to 'int' [-Wimplicit-int] 626 | singreport(seq, segs) | ^~~~~~~~~~ seg.c: In function 'singreport': seg.c:626:1: warning: old-style function definition [-Wold-style-definition] seg.c:636:9: error: too many arguments to function 'upper'; expected 0, have 2 636 | upper(proseq, seq->length); | ^~~~~ ~~~~~~ genwin.h:160:8: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c: At top level: seg.c:663:1: warning: return type defaults to 'int' [-Wimplicit-int] 663 | prettyreport(seq, segs) | ^~~~~~~~~~~~ seg.c: In function 'prettyreport': seg.c:663:1: warning: old-style function definition [-Wold-style-definition] seg.c:677:9: error: too many arguments to function 'upper'; expected 0, have 2 677 | upper(proseq = seq->seq, seq->length); | ^~~~~ ~~~~~~~~~~~~~~~~~ genwin.h:160:8: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:682:17: error: too many arguments to function 'lower'; expected 0, have 2 682 | lower(proseq + begin, end - begin + 1); | ^~~~~ ~~~~~~~~~~~~~~ genwin.h:160:17: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:687:9: warning: implicit declaration of function 'space'; did you mean 'isspace'? [-Wimplicit-function-declaration] 687 | space(leftspace+1); | ^~~~~ | isspace seg.c: At top level: seg.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int] 718 | pretreereport(seq, segs) | ^~~~~~~~~~~~~ seg.c: In function 'pretreereport': seg.c:718:1: warning: old-style function definition [-Wold-style-definition] seg.c:749:31: error: too many arguments to function 'openwin'; expected 0, have 3 749 | win = openwin(seq, left, len); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:750:25: error: too many arguments to function 'upper'; expected 0, have 2 750 | upper(curseq = win->seq, win->length); | ^~~~~ ~~~~~~~~~~~~~~~~~ genwin.h:160:8: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:769:25: error: too many arguments to function 'closewin'; expected 0, have 1 769 | closewin(win); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:777:13: error: too many arguments to function 'openwin'; expected 0, have 3 777 | win = openwin(seq, left, len); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:778:7: error: too many arguments to function 'lower'; expected 0, have 2 778 | lower(curseq = win->seq, win->length); | ^~~~~ ~~~~~~~~~~~~~~~~~ genwin.h:160:17: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:802:17: error: too many arguments to function 'closewin'; expected 0, have 1 802 | closewin(win); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c: At top level: seg.c:811:1: warning: return type defaults to 'int' [-Wimplicit-int] 811 | space(len) | ^~~~~ seg.c: In function 'space': seg.c:811:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:832:1: warning: return type defaults to 'int' [-Wimplicit-int] 832 | seqout(seq, hilo, begin, end) | ^~~~~~ seg.c: In function 'seqout': seg.c:832:1: warning: old-style function definition [-Wold-style-definition] seg.c:856:11: error: too many arguments to function 'findchar'; expected 0, have 2 856 | iend = findchar(header, ' '); | ^~~~~~~~ ~~~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ seg.c:881:7: error: too many arguments to function 'lower'; expected 0, have 2 881 | lower(proseq, seq->length); | ^~~~~ ~~~~~~ genwin.h:160:17: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:885:7: error: too many arguments to function 'upper'; expected 0, have 2 885 | upper(proseq, seq->length); | ^~~~~ ~~~~~~ genwin.h:160:8: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:889:7: error: too many arguments to function 'lower'; expected 0, have 2 889 | lower(proseq, seq->length); | ^~~~~ ~~~~~~ genwin.h:160:17: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c: At top level: seg.c:906:1: warning: return type defaults to 'int' [-Wimplicit-int] 906 | appendseg(segs, seg) | ^~~~~~~~~ seg.c: In function 'appendseg': seg.c:906:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:930:1: warning: return type defaults to 'int' [-Wimplicit-int] 930 | freesegs(segs) | ^~~~~~~~ seg.c: In function 'freesegs': seg.c:930:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:945:1: warning: return type defaults to 'int' [-Wimplicit-int] 945 | usage() | ^~~~~ make[1]: *** [Makefile:413: genwin.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make[1]: *** [Makefile:413: seg.o] Error 1 make[1]: Leaving directory '/build/reproducible-path/ncbi-seg-0.0.20000620' dh_auto_build: error: make -j42 returned exit code 2 make: *** [debian/rules:15: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2946653 and its subdirectories Starting cleanup. All cleanup done. Sun Oct 18 23:10:53 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-pgz0ADbP, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Th5PH4fg: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 16:47 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 16:46 b2 -rw-rw-r-- 1 jenkins jenkins 2214 Sep 1 2024 ncbi-seg_0.0.20000620-7.dsc -rw------- 1 jenkins jenkins 3352 Sep 15 16:46 rbuildlog.JGtj7X6 /srv/reproducible-results/rbuild-debian/r-b-build.Th5PH4fg/b1: total 64 -rw-r--r-- 1 jenkins jenkins 62088 Sep 15 16:47 build.log /srv/reproducible-results/rbuild-debian/r-b-build.Th5PH4fg/b2: total 0 Mon Sep 15 16:47:53 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 18 11:09:59 -12 2026 I: pbuilder-time-stamp: 1792364999 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ncbi-seg_0.0.20000620-7.dsc] I: copying [./ncbi-seg_0.0.20000620.orig.tar.gz] I: copying [./ncbi-seg_0.0.20000620-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ncbi-seg_0.0.20000620-7.dsc: no acceptable signature found dpkg-source: info: extracting ncbi-seg in ncbi-seg-0.0.20000620 dpkg-source: info: unpacking ncbi-seg_0.0.20000620.orig.tar.gz dpkg-source: info: unpacking ncbi-seg_0.0.20000620-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile dpkg-source: info: applying example dpkg-source: info: applying seg.c dpkg-source: info: applying genwin.c dpkg-source: info: applying autotools dpkg-source: info: applying seg.pod dpkg-source: info: applying clang.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2946653/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c2a8bbfad9b74c109e0abd58deea824e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2946653' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Th5PH4fg/pbuilderrc_URDS --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Th5PH4fg/b1 --logfile b1/build.log ncbi-seg_0.0.20000620-7.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2946653/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Fetched 11.2 MB in 2s (5753 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. 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Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-seg_0.0.20000620-7_source.changes dpkg-buildpackage: info: source package ncbi-seg dpkg-buildpackage: info: source version 0.0.20000620-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' dh_autoreconf -X./COPYING configure.ac:5: installing './compile' configure.ac:3: installing './install-sh' configure.ac:3: installing './missing' Makefile.am: installing './INSTALL' Makefile.am: installing './depcomp' make[1]: Leaving directory '/build/reproducible-path/ncbi-seg-0.0.20000620' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o seg.o seg.c gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o genwin.o genwin.c sed -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/ncbi-seg|g;s|__pkgdatadir__|/usr/share/ncbi-seg|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|0.0.20000620|g;' "ncbi-seg.pod" | \ pod2man -c 'User Commands' -r "0.0.20000620" -name NCBI-SEG > "ncbi-seg.1" In file included from seg.c:10: genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] 146 | extern closedbase(); | ^~~~~~~~~~ genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] 149 | extern closeseq(); | ^~~~~~~~ genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.h:154:8: warning: type defaults to 'int' in declaration of 'compon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~ genwin.h:154:18: warning: type defaults to 'int' in declaration of 'stateon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~~ genwin.h:154:29: warning: type defaults to 'int' in declaration of 'enton' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~ genwin.h:158:8: warning: type defaults to 'int' in declaration of 'closemat' [-Wimplicit-int] 158 | extern closemat(); | ^~~~~~~~ genwin.h:160:8: warning: type defaults to 'int' in declaration of 'upper' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ In file included from genwin.c:9: genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] 146 | extern closedbase(); | ^~~~~~~~~~ genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] 149 | extern closeseq(); | ^~~~~~~~ genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.h:154:8: warning: type defaults to 'int' in declaration of 'compon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~ genwin.h:154:18: warning: type defaults to 'int' in declaration of 'stateon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~~ genwin.h:154:29: warning: type defaults to 'int' in declaration of 'enton' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~ genwin.h:158:8: warning: type defaults to 'int' in declaration of 'closemat' [-Wimplicit-int] 158 | extern closemat(); | ^~~~~~~~ genwin.h:160:8: warning: type defaults to 'int' in declaration of 'upper' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:62:1: warning: return type defaults to 'int' [-Wimplicit-int] 62 | genwininit() | ^~~~~~~~~~ genwin.c: In function 'opendbase': genwin.c:86:25: warning: old-style function definition [-Wold-style-definition] 86 | extern struct Database *opendbase(name) | ^~~~~~~~~ genwin.c:89:3: error: number of arguments doesn't match prototype 89 | {struct Database *dbase; | ^ genwin.h:145:25: error: prototype declaration 145 | extern struct Database *opendbase(); | ^~~~~~~~~ genwin.c:93:8: warning: implicit declaration of function 'blastdb' [-Wimplicit-function-declaration] 93 | if (blastdb(name)) | ^~~~~~~ genwin.c: In function 'blastdb': genwin.c:129:5: warning: old-style function definition [-Wold-style-definition] 129 | int blastdb(name) | ^~~~~~~ genwin.c: At top level: genwin.c:144:8: warning: return type defaults to 'int' [-Wimplicit-int] 144 | extern closedbase(dbase) | ^~~~~~~~~~ genwin.c: In function 'closedbase': genwin.c:144:8: warning: old-style function definition [-Wold-style-definition] genwin.c:147:3: error: number of arguments doesn't match prototype 147 | { | ^ genwin.h:146:8: error: prototype declaration 146 | extern closedbase(); | ^~~~~~~~~~ genwin.c: In function 'firstseq': genwin.c:158:25: warning: old-style function definition [-Wold-style-definition] 158 | extern struct Sequence *firstseq(dbase) | ^~~~~~~~ genwin.c:161:3: error: number of arguments doesn't match prototype 161 | { | ^ genwin.h:148:37: error: prototype declaration 148 | extern struct Sequence *openseq(), *firstseq(), *nextseq(); | ^~~~~~~~ genwin.c:171:11: error: too many arguments to function 'readentry'; expected 0, have 1 171 | return(readentry(dbase)); | ^~~~~~~~~ ~~~~~ genwin.c:17:18: note: declared here 17 | struct Sequence *readentry(); | ^~~~~~~~~ genwin.c: In function 'nextseq': genwin.c:176:25: warning: old-style function definition [-Wold-style-definition] 176 | extern struct Sequence *nextseq(dbase) | ^~~~~~~ genwin.c:179:3: error: number of arguments doesn't match prototype 179 | { | ^ genwin.h:148:50: error: prototype declaration 148 | extern struct Sequence *openseq(), *firstseq(), *nextseq(); | ^~~~~~~ genwin.c:180:11: error: too many arguments to function 'readentry'; expected 0, have 1 180 | return(readentry(dbase)); | ^~~~~~~~~ ~~~~~ genwin.c:17:18: note: declared here 17 | struct Sequence *readentry(); | ^~~~~~~~~ genwin.c: At top level: genwin.c:185:8: warning: return type defaults to 'int' [-Wimplicit-int] 185 | extern closeseq(seq) | ^~~~~~~~ genwin.c: In function 'closeseq': genwin.c:185:8: warning: old-style function definition [-Wold-style-definition] genwin.c:188:3: error: number of arguments doesn't match prototype 188 | { | ^ genwin.h:149:8: error: prototype declaration 149 | extern closeseq(); | ^~~~~~~~ genwin.c: In function 'openwin': genwin.c:204:25: warning: old-style function definition [-Wold-style-definition] 204 | extern struct Sequence *openwin(parent, start, length) | ^~~~~~~ genwin.c:208:3: error: number of arguments doesn't match prototype 208 | {struct Sequence *win; | ^ genwin.h:151:25: error: prototype declaration 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ genwin.c:262:9: error: too many arguments to function 'stateon'; expected 0, have 1 262 | stateon(win); | ^~~~~~~ ~~~ genwin.h:154:18: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~~~ genwin.c: In function 'nextwin': genwin.c:269:25: warning: old-style function definition [-Wold-style-definition] 269 | extern struct Sequence *nextwin(win, shift) | ^~~~~~~ genwin.c:273:3: error: number of arguments doesn't match prototype 273 | { | ^ genwin.h:151:37: error: prototype declaration 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ genwin.c:281:14: error: too many arguments to function 'openwin'; expected 0, have 3 281 | return(openwin(win->parent, win->start+shift, win->length)); | ^~~~~~~ ~~~~~~~~~~~ genwin.c:204:25: note: declared here 204 | extern struct Sequence *openwin(parent, start, length) | ^~~~~~~ genwin.c: In function 'shiftwin1': genwin.c:288:12: warning: old-style function definition [-Wold-style-definition] 288 | extern int shiftwin1(win) | ^~~~~~~~~ genwin.c:303:17: error: too many arguments to function 'decrementsv'; expected 0, have 2 303 | decrementsv(win->state, comp[aaindex[j]]--); | ^~~~~~~~~~~ ~~~~~~~~~~ genwin.c:286:17: note: declared here 286 | static void decrementsv(), incrementsv(); | ^~~~~~~~~~~ genwin.c:309:17: error: too many arguments to function 'incrementsv'; expected 0, have 2 309 | incrementsv(win->state, comp[aaindex[j]]++); | ^~~~~~~~~~~ ~~~~~~~~~~ genwin.c:286:32: note: declared here 286 | static void decrementsv(), incrementsv(); | ^~~~~~~~~~~ genwin.c:312:32: error: too many arguments to function 'entropy'; expected 0, have 1 312 | win->entropy = entropy(win->state); | ^~~~~~~ ~~~~~~~~~~ genwin.h:155:15: note: declared here 155 | extern double entropy(); | ^~~~~~~ genwin.c: At top level: genwin.c:319:8: warning: return type defaults to 'int' [-Wimplicit-int] 319 | extern closewin(win) | ^~~~~~~~ genwin.c: In function 'closewin': genwin.c:319:8: warning: old-style function definition [-Wold-style-definition] genwin.c:322:3: error: number of arguments doesn't match prototype 322 | { | ^ genwin.h:152:20: error: prototype declaration 152 | extern shiftwin(), closewin(); | ^~~~~~~~ genwin.c: At top level: genwin.c:336:8: warning: return type defaults to 'int' [-Wimplicit-int] 336 | extern compon(win) | ^~~~~~ genwin.c: In function 'compon': genwin.c:336:8: warning: old-style function definition [-Wold-style-definition] genwin.c:338:1: error: number of arguments doesn't match prototype 338 | { | ^ genwin.h:154:8: error: prototype declaration 154 | extern compon(), stateon(), enton(); | ^~~~~~ genwin.c: In function 'state_cmp': genwin.c:358:12: warning: old-style function definition [-Wold-style-definition] 358 | static int state_cmp(s1, s2) | ^~~~~~~~~ genwin.c: At top level: genwin.c:364:8: warning: return type defaults to 'int' [-Wimplicit-int] 364 | extern stateon(win) | ^~~~~~~ genwin.c: In function 'stateon': genwin.c:364:8: warning: old-style function definition [-Wold-style-definition] genwin.c:366:1: error: number of arguments doesn't match prototype 366 | { | ^ genwin.h:154:18: error: prototype declaration 154 | extern compon(), stateon(), enton(); | ^~~~~~~ genwin.c:370:17: error: too many arguments to function 'compon'; expected 0, have 1 370 | compon(win); | ^~~~~~ ~~~ genwin.c:336:8: note: declared here 336 | extern compon(win) | ^~~~~~ genwin.c: At top level: genwin.c:389:8: warning: return type defaults to 'int' [-Wimplicit-int] 389 | extern enton(win) | ^~~~~ genwin.c: In function 'enton': genwin.c:389:8: warning: old-style function definition [-Wold-style-definition] genwin.c:392:3: error: number of arguments doesn't match prototype 392 | { | ^ genwin.h:154:29: error: prototype declaration 154 | extern compon(), stateon(), enton(); | ^~~~~ genwin.c:393:27: error: too many arguments to function 'stateon'; expected 0, have 1 393 | if (win->state==NULL) {stateon(win);} | ^~~~~~~ ~~~ genwin.c:364:8: note: declared here 364 | extern stateon(win) | ^~~~~~~ genwin.c:395:19: error: too many arguments to function 'entropy'; expected 0, have 1 395 | win->entropy = entropy(win->state); | ^~~~~~~ ~~~~~~~~~~ genwin.h:155:15: note: declared here 155 | extern double entropy(); | ^~~~~~~ genwin.c: In function 'entropy_init': genwin.c:407:1: warning: old-style function definition [-Wold-style-definition] 407 | entropy_init(window) | ^~~~~~~~~~~~ genwin.c: In function 'entropy': genwin.c:423:15: warning: old-style function definition [-Wold-style-definition] 423 | extern double entropy(sv) | ^~~~~~~ genwin.c:425:1: error: number of arguments doesn't match prototype 425 | { | ^ genwin.h:155:15: error: prototype declaration 155 | extern double entropy(); | ^~~~~~~ genwin.c: In function 'decrementsv': genwin.c:456:1: warning: old-style function definition [-Wold-style-definition] 456 | decrementsv(sv, class) | ^~~~~~~~~~~ genwin.c: In function 'incrementsv': genwin.c:473:1: warning: old-style function definition [-Wold-style-definition] 473 | incrementsv(sv, class) | ^~~~~~~~~~~ genwin.c: In function 'readentry': genwin.c:487:18: warning: old-style function definition [-Wold-style-definition] 487 | struct Sequence *readentry(dbase) | ^~~~~~~~~ genwin.c:490:3: error: number of arguments doesn't match prototype 490 | {struct Sequence *seq; | ^ genwin.c:17:18: error: prototype declaration 17 | struct Sequence *readentry(); | ^~~~~~~~~ genwin.c:510:9: warning: implicit declaration of function 'readhdr' [-Wimplicit-function-declaration] 510 | if (!readhdr(seq)) | ^~~~~~~ genwin.c:528:4: warning: implicit declaration of function 'readseq' [-Wimplicit-function-declaration] 528 | readseq(seq); | ^~~~~~~ genwin.c: At top level: genwin.c:545:1: warning: return type defaults to 'int' [-Wimplicit-int] 545 | readhdr(seq) | ^~~~~~~ genwin.c: In function 'readhdr': genwin.c:545:1: warning: old-style function definition [-Wold-style-definition] genwin.c:613:12: error: too many arguments to function 'findchar'; expected 0, have 2 613 | idend = findchar(bptr, ' '); | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:614:28: error: too many arguments to function 'findchar'; expected 0, have 2 614 | if (idend==-1) {idend = findchar(bptr, '\n');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:615:28: error: too many arguments to function 'findchar'; expected 0, have 2 615 | if (idend==-1) {idend = findchar(bptr, '\0');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:631:13: error: too many arguments to function 'findchar'; expected 0, have 2 631 | namend = findchar(bptr, '-'); | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:632:30: error: too many arguments to function 'findchar'; expected 0, have 2 632 | if (namend==-1) {namend = findchar(bptr, '\n');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:633:30: error: too many arguments to function 'findchar'; expected 0, have 2 633 | if (namend==-1) {namend = findchar(bptr, '\0');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:649:13: error: too many arguments to function 'findchar'; expected 0, have 2 649 | orgend = findchar(bptr, '|'); | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:650:30: error: too many arguments to function 'findchar'; expected 0, have 2 650 | if (orgend==-1) {orgend = findchar(bptr, '#');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:651:30: error: too many arguments to function 'findchar'; expected 0, have 2 651 | if (orgend==-1) {orgend = findchar(bptr, '\n');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:652:30: error: too many arguments to function 'findchar'; expected 0, have 2 652 | if (orgend==-1) {orgend = findchar(bptr, '\0');} | ^~~~~~~~ ~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c:670:10: warning: implicit declaration of function 'skipline' [-Wimplicit-function-declaration] 670 | skipline(fp); | ^~~~~~~~ genwin.c: At top level: genwin.c:684:1: warning: return type defaults to 'int' [-Wimplicit-int] 684 | skipline(fp) | ^~~~~~~~ genwin.c: In function 'skipline': genwin.c:684:1: warning: old-style function definition [-Wold-style-definition] genwin.c: In function 'findchar': genwin.c:697:12: warning: old-style function definition [-Wold-style-definition] 697 | extern int findchar(str, chr) | ^~~~~~~~ genwin.c:701:3: error: number of arguments doesn't match prototype 701 | {int i; | ^ genwin.h:160:26: error: prototype declaration 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ genwin.c: At top level: genwin.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int] 718 | readseq(seq) | ^~~~~~~ genwin.c: In function 'readseq': genwin.c:718:1: warning: old-style function definition [-Wold-style-definition] genwin.c: At top level: genwin.c:794:8: warning: return type defaults to 'int' [-Wimplicit-int] 794 | extern upper(string, len) | ^~~~~ genwin.c: In function 'upper': genwin.c:794:8: warning: old-style function definition [-Wold-style-definition] genwin.c:797:1: error: number of arguments doesn't match prototype 797 | { | ^ genwin.h:160:8: error: prototype declaration 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.c: At top level: genwin.c:807:8: warning: return type defaults to 'int' [-Wimplicit-int] 807 | extern lower(string, len) | ^~~~~ genwin.c: In function 'lower': genwin.c:807:8: warning: old-style function definition [-Wold-style-definition] genwin.c:810:1: error: number of arguments doesn't match prototype 810 | { | ^ genwin.h:160:17: error: prototype declaration 160 | extern upper(), lower(), findchar(); | ^~~~~ genwin.c: In function 'min': genwin.c:820:5: warning: old-style function definition [-Wold-style-definition] 820 | int min(a, b) | ^~~ genwin.c: In function 'max': genwin.c:830:5: warning: old-style function definition [-Wold-style-definition] 830 | int max(a, b) | ^~~ genwin.c: In function 'tmalloc': genwin.c:842:7: warning: old-style function definition [-Wold-style-definition] 842 | void *tmalloc(size) | ^~~~~~~ genwin.c:845:3: error: number of arguments doesn't match prototype 845 | {void *ptr; | ^ genwin.c:56:7: error: prototype declaration 56 | void *tmalloc(); | ^~~~~~~ genwin.c: At top level: genwin.c:862:1: warning: return type defaults to 'int' [-Wimplicit-int] 862 | tfree(ptr) | ^~~~~ genwin.c: In function 'tfree': genwin.c:862:1: warning: old-style function definition [-Wold-style-definition] seg.c:49:1: warning: return type defaults to 'int' [-Wimplicit-int] 49 | main(argc, argv) | ^~~~ seg.c: In function 'main': seg.c:49:1: warning: old-style function definition [-Wold-style-definition] seg.c:58:4: warning: implicit declaration of function 'genwininit' [-Wimplicit-function-declaration] 58 | genwininit(); | ^~~~~~~~~~ seg.c:60:4: warning: implicit declaration of function 'getparams' [-Wimplicit-function-declaration] 60 | getparams(argc, argv); | ^~~~~~~~~ seg.c:61:4: warning: implicit declaration of function 'entropy_init' [-Wimplicit-function-declaration] 61 | entropy_init(window); | ^~~~~~~~~~~~ seg.c:63:12: error: too many arguments to function 'opendbase'; expected 0, have 1 63 | if ((db=opendbase(argv[1]))==NULL) | ^~~~~~~~~ ~~~~~~~ genwin.h:145:25: note: declared here 145 | extern struct Database *opendbase(); | ^~~~~~~~~ seg.c:69:13: error: too many arguments to function 'firstseq'; expected 0, have 1 69 | for (seq=firstseq(db); seq!=NULL; seq=nextseq(db)) | ^~~~~~~~ ~~ genwin.h:148:37: note: declared here 148 | extern struct Sequence *openseq(), *firstseq(), *nextseq(); | ^~~~~~~~ seg.c:69:42: error: too many arguments to function 'nextseq'; expected 0, have 1 69 | for (seq=firstseq(db); seq!=NULL; seq=nextseq(db)) | ^~~~~~~ ~~ genwin.h:148:50: note: declared here 148 | extern struct Sequence *openseq(), *firstseq(), *nextseq(); | ^~~~~~~ seg.c:72:7: warning: implicit declaration of function 'segseq' [-Wimplicit-function-declaration] 72 | segseq(seq, &segs, 0); | ^~~~~~ seg.c:73:7: warning: implicit declaration of function 'mergesegs' [-Wimplicit-function-declaration] 73 | mergesegs(seq, segs); | ^~~~~~~~~ seg.c:75:22: warning: implicit declaration of function 'singreport' [-Wimplicit-function-declaration] 75 | if (singleseq) singreport(seq, segs); | ^~~~~~~~~~ seg.c:76:27: warning: implicit declaration of function 'prettyreport' [-Wimplicit-function-declaration] 76 | else if (prettyseq) prettyreport(seq, segs); | ^~~~~~~~~~~~ seg.c:77:28: warning: implicit declaration of function 'pretreereport' [-Wimplicit-function-declaration] 77 | else if (prettytree) pretreereport(seq, segs); | ^~~~~~~~~~~~~ seg.c:78:12: warning: implicit declaration of function 'report' [-Wimplicit-function-declaration] 78 | else report(seq, segs); | ^~~~~~ seg.c:80:7: warning: implicit declaration of function 'freesegs' [-Wimplicit-function-declaration] 80 | freesegs(segs); | ^~~~~~~~ seg.c:81:7: error: too many arguments to function 'closeseq'; expected 0, have 1 81 | closeseq(seq); | ^~~~~~~~ ~~~ genwin.h:149:8: note: declared here 149 | extern closeseq(); | ^~~~~~~~ seg.c:84:4: error: too many arguments to function 'closedbase'; expected 0, have 1 84 | closedbase(db); | ^~~~~~~~~~ ~~ genwin.h:146:8: note: declared here 146 | extern closedbase(); | ^~~~~~~~~~ seg.c: At top level: seg.c:90:1: warning: return type defaults to 'int' [-Wimplicit-int] 90 | getparams(argc, argv) | ^~~~~~~~~ seg.c: In function 'getparams': seg.c:90:1: warning: old-style function definition [-Wold-style-definition] seg.c:103:7: warning: implicit declaration of function 'usage' [-Wimplicit-function-declaration] 103 | usage(); | ^~~~~ seg.c:137:14: warning: implicit declaration of function 'getopt'; did you mean 'getsubopt'? [-Wimplicit-function-declaration] 137 | while ((c=getopt(nargc, nargv, "m:olhaxpqc:nt:"))!=-1) | ^~~~~~ | getsubopt seg.c: At top level: seg.c:210:1: warning: return type defaults to 'int' [-Wimplicit-int] 210 | segseq(seq, segs, offset) | ^~~~~~ seg.c: In function 'segseq': seg.c:210:1: warning: old-style function definition [-Wold-style-definition] seg.c:222:8: error: too many arguments to function 'seqent'; expected 0, have 1 222 | H = seqent(seq); | ^~~~~~ ~~~ seg.c:220:16: note: declared here 220 | double *H, *seqent(); | ^~~~~~ seg.c:233:16: warning: implicit declaration of function 'findlo' [-Wimplicit-function-declaration] 233 | loi = findlo(i, lowlim, H); | ^~~~~~ seg.c:234:16: warning: implicit declaration of function 'findhi'; did you mean 'findchar'? [-Wimplicit-function-declaration] 234 | hii = findhi(i, last, H); | ^~~~~~ | findchar seg.c:239:10: warning: implicit declaration of function 'trim' [-Wimplicit-function-declaration] 239 | trim(openwin(seq, leftend, rightend-leftend+1), &leftend, &rightend); | ^~~~ seg.c:239:15: error: too many arguments to function 'openwin'; expected 0, have 3 239 | trim(openwin(seq, leftend, rightend-leftend+1), &leftend, &rightend); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:246:23: error: too many arguments to function 'openwin'; expected 0, have 3 246 | leftseq = openwin(seq, lend, rend-lend+1); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:252:21: warning: implicit declaration of function 'appendseg' [-Wimplicit-function-declaration] 252 | else appendseg(*segs, leftsegs); | ^~~~~~~~~ seg.c:254:13: error: too many arguments to function 'closewin'; expected 0, have 1 254 | closewin(leftseq); | ^~~~~~~~ ~~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:273:14: warning: implicit declaration of function 'min'; did you mean 'main'? [-Wimplicit-function-declaration] 273 | i = min(hii, rightend+downset); | ^~~ | main seg.c: In function 'seqent': seg.c:220:16: warning: old-style function definition [-Wold-style-definition] 220 | double *H, *seqent(); | ^~~~~~ seg.c:288:3: error: number of arguments doesn't match prototype 288 | {struct Sequence *win; | ^ seg.c:220:16: error: prototype declaration 220 | double *H, *seqent(); | ^~~~~~ seg.c:304:10: error: too many arguments to function 'openwin'; expected 0, have 3 304 | win = openwin(seq, 0, window); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:305:4: error: too many arguments to function 'enton'; expected 0, have 1 305 | enton(win); | ^~~~~ ~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:312:31: warning: implicit declaration of function 'hasdash' [-Wimplicit-function-declaration] 312 | if (seq->punctuation && hasdash(win)) | ^~~~~~~ seg.c:314:10: warning: implicit declaration of function 'shiftwin1'; did you mean 'shiftwin'? [-Wimplicit-function-declaration] 314 | shiftwin1(win); | ^~~~~~~~~ | shiftwin seg.c:320:4: error: too many arguments to function 'closewin'; expected 0, have 1 320 | closewin(win); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c: At top level: seg.c:326:1: warning: return type defaults to 'int' [-Wimplicit-int] 326 | hasdash(win) | ^~~~~~~ seg.c: In function 'hasdash': seg.c:326:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:343:1: warning: return type defaults to 'int' [-Wimplicit-int] 343 | findlo(i, limit, H) | ^~~~~~ seg.c: In function 'findlo': seg.c:343:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:360:1: warning: return type defaults to 'int' [-Wimplicit-int] 360 | findhi(i, limit, H) | ^~~~~~ seg.c: In function 'findhi': seg.c:360:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:377:1: warning: return type defaults to 'int' [-Wimplicit-int] 377 | trim(seq, leftend, rightend) | ^~~~ seg.c: In function 'trim': seg.c:377:1: warning: old-style function definition [-Wold-style-definition] seg.c:397:13: error: too many arguments to function 'openwin'; expected 0, have 3 397 | win = openwin(seq, 0, len); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:403:17: error: too many arguments to function 'getprob'; expected 0, have 2 403 | prob = getprob(win->state, len); | ^~~~~~~ ~~~~~~~~~~ seg.c:45:8: note: declared here 45 | double getprob(), lnperm(), lnass(); | ^~~~~~~ seg.c:413:7: error: too many arguments to function 'closewin'; expected 0, have 1 413 | closewin(win); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:423:4: error: too many arguments to function 'closewin'; expected 0, have 1 423 | closewin(seq); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c: In function 'getprob': seg.c:429:8: warning: old-style function definition [-Wold-style-definition] 429 | double getprob(sv, total) | ^~~~~~~ seg.c:433:3: error: number of arguments doesn't match prototype 433 | {double ans, totseq; | ^ seg.c:45:8: error: prototype declaration 45 | double getprob(), lnperm(), lnass(); | ^~~~~~~ seg.c:438:10: error: too many arguments to function 'lnass'; expected 0, have 1 438 | ans = lnass(sv) + lnperm(sv, total) - totseq; | ^~~~~ ~~ seg.c:45:29: note: declared here 45 | double getprob(), lnperm(), lnass(); | ^~~~~ seg.c:438:22: error: too many arguments to function 'lnperm'; expected 0, have 2 438 | ans = lnass(sv) + lnperm(sv, total) - totseq; | ^~~~~~ ~~ seg.c:45:19: note: declared here 45 | double getprob(), lnperm(), lnass(); | ^~~~~~ seg.c: In function 'lnperm': seg.c:445:8: warning: old-style function definition [-Wold-style-definition] 445 | double lnperm(sv, tot) | ^~~~~~ seg.c:449:3: error: number of arguments doesn't match prototype 449 | {double ans; | ^ seg.c:45:19: error: prototype declaration 45 | double getprob(), lnperm(), lnass(); | ^~~~~~ seg.c: In function 'lnass': seg.c:464:8: warning: old-style function definition [-Wold-style-definition] 464 | double lnass(sv) | ^~~~~ seg.c:466:1: error: number of arguments doesn't match prototype 466 | { | ^ seg.c:45:29: error: prototype declaration 45 | double getprob(), lnperm(), lnass(); | ^~~~~ seg.c: At top level: seg.c:507:1: warning: return type defaults to 'int' [-Wimplicit-int] 507 | mergesegs(seq, segs) | ^~~~~~~~~ seg.c: In function 'mergesegs': seg.c:507:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:553:1: warning: return type defaults to 'int' [-Wimplicit-int] 553 | report(seq, segs) | ^~~~~~ seg.c: In function 'report': seg.c:553:1: warning: old-style function definition [-Wold-style-definition] seg.c:564:7: error: too many arguments to function 'enton'; expected 0, have 1 564 | enton(seq); | ^~~~~ ~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:565:7: warning: implicit declaration of function 'seqout'; did you mean 'seqent'? [-Wimplicit-function-declaration] 565 | seqout(seq, hi, 1, seq->length); | ^~~~~~ | seqent seg.c:572:16: error: too many arguments to function 'openwin'; expected 0, have 3 572 | subseq = openwin(seq, 0, segs->begin); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:573:7: error: too many arguments to function 'enton'; expected 0, have 1 573 | enton(subseq); | ^~~~~ ~~~~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:575:7: error: too many arguments to function 'closewin'; expected 0, have 1 575 | closewin(subseq); | ^~~~~~~~ ~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:580:16: error: too many arguments to function 'openwin'; expected 0, have 3 580 | subseq = openwin(seq, seg->begin, seg->end-seg->begin+1); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:581:7: error: too many arguments to function 'enton'; expected 0, have 1 581 | enton(subseq); | ^~~~~ ~~~~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:583:7: error: too many arguments to function 'closewin'; expected 0, have 1 583 | closewin(subseq); | ^~~~~~~~ ~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:603:16: error: too many arguments to function 'openwin'; expected 0, have 3 603 | subseq = openwin(seq, seg->end+1, nextseg->begin-seg->end-1); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:604:7: error: too many arguments to function 'enton'; expected 0, have 1 604 | enton(subseq); | ^~~~~ ~~~~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:606:7: error: too many arguments to function 'closewin'; expected 0, have 1 606 | closewin(subseq); | ^~~~~~~~ ~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:615:13: error: too many arguments to function 'openwin'; expected 0, have 3 615 | subseq = openwin(seq, seg->end+1, seq->length-seg->end-1); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:616:4: error: too many arguments to function 'enton'; expected 0, have 1 616 | enton(subseq); | ^~~~~ ~~~~~~ genwin.h:154:29: note: declared here 154 | extern compon(), stateon(), enton(); | ^~~~~ seg.c:618:4: error: too many arguments to function 'closewin'; expected 0, have 1 618 | closewin(subseq); | ^~~~~~~~ ~~~~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c: At top level: seg.c:626:1: warning: return type defaults to 'int' [-Wimplicit-int] 626 | singreport(seq, segs) | ^~~~~~~~~~ seg.c: In function 'singreport': seg.c:626:1: warning: old-style function definition [-Wold-style-definition] seg.c:636:9: error: too many arguments to function 'upper'; expected 0, have 2 636 | upper(proseq, seq->length); | ^~~~~ ~~~~~~ genwin.h:160:8: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c: At top level: seg.c:663:1: warning: return type defaults to 'int' [-Wimplicit-int] 663 | prettyreport(seq, segs) | ^~~~~~~~~~~~ seg.c: In function 'prettyreport': seg.c:663:1: warning: old-style function definition [-Wold-style-definition] seg.c:677:9: error: too many arguments to function 'upper'; expected 0, have 2 677 | upper(proseq = seq->seq, seq->length); | ^~~~~ ~~~~~~~~~~~~~~~~~ genwin.h:160:8: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:682:17: error: too many arguments to function 'lower'; expected 0, have 2 682 | lower(proseq + begin, end - begin + 1); | ^~~~~ ~~~~~~~~~~~~~~ genwin.h:160:17: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:687:9: warning: implicit declaration of function 'space'; did you mean 'isspace'? [-Wimplicit-function-declaration] 687 | space(leftspace+1); | ^~~~~ | isspace seg.c: At top level: seg.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int] 718 | pretreereport(seq, segs) | ^~~~~~~~~~~~~ seg.c: In function 'pretreereport': seg.c:718:1: warning: old-style function definition [-Wold-style-definition] seg.c:749:31: error: too many arguments to function 'openwin'; expected 0, have 3 749 | win = openwin(seq, left, len); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:750:25: error: too many arguments to function 'upper'; expected 0, have 2 750 | upper(curseq = win->seq, win->length); | ^~~~~ ~~~~~~~~~~~~~~~~~ genwin.h:160:8: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:769:25: error: too many arguments to function 'closewin'; expected 0, have 1 769 | closewin(win); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c:777:13: error: too many arguments to function 'openwin'; expected 0, have 3 777 | win = openwin(seq, left, len); | ^~~~~~~ ~~~ genwin.h:151:25: note: declared here 151 | extern struct Sequence *openwin(), *nextwin(); | ^~~~~~~ seg.c:778:7: error: too many arguments to function 'lower'; expected 0, have 2 778 | lower(curseq = win->seq, win->length); | ^~~~~ ~~~~~~~~~~~~~~~~~ genwin.h:160:17: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:802:17: error: too many arguments to function 'closewin'; expected 0, have 1 802 | closewin(win); | ^~~~~~~~ ~~~ genwin.h:152:20: note: declared here 152 | extern shiftwin(), closewin(); | ^~~~~~~~ seg.c: At top level: seg.c:811:1: warning: return type defaults to 'int' [-Wimplicit-int] 811 | space(len) | ^~~~~ seg.c: In function 'space': seg.c:811:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:832:1: warning: return type defaults to 'int' [-Wimplicit-int] 832 | seqout(seq, hilo, begin, end) | ^~~~~~ seg.c: In function 'seqout': seg.c:832:1: warning: old-style function definition [-Wold-style-definition] seg.c:856:11: error: too many arguments to function 'findchar'; expected 0, have 2 856 | iend = findchar(header, ' '); | ^~~~~~~~ ~~~~~~ genwin.h:160:26: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ seg.c:881:7: error: too many arguments to function 'lower'; expected 0, have 2 881 | lower(proseq, seq->length); | ^~~~~ ~~~~~~ genwin.h:160:17: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:885:7: error: too many arguments to function 'upper'; expected 0, have 2 885 | upper(proseq, seq->length); | ^~~~~ ~~~~~~ genwin.h:160:8: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c:889:7: error: too many arguments to function 'lower'; expected 0, have 2 889 | lower(proseq, seq->length); | ^~~~~ ~~~~~~ genwin.h:160:17: note: declared here 160 | extern upper(), lower(), findchar(); | ^~~~~ seg.c: At top level: seg.c:906:1: warning: return type defaults to 'int' [-Wimplicit-int] 906 | appendseg(segs, seg) | ^~~~~~~~~ seg.c: In function 'appendseg': seg.c:906:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:930:1: warning: return type defaults to 'int' [-Wimplicit-int] 930 | freesegs(segs) | ^~~~~~~~ seg.c: In function 'freesegs': seg.c:930:1: warning: old-style function definition [-Wold-style-definition] seg.c: At top level: seg.c:945:1: warning: return type defaults to 'int' [-Wimplicit-int] 945 | usage() | ^~~~~ make[1]: *** [Makefile:413: genwin.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make[1]: *** [Makefile:413: seg.o] Error 1 make[1]: Leaving directory '/build/reproducible-path/ncbi-seg-0.0.20000620' dh_auto_build: error: make -j42 returned exit code 2 make: *** [debian/rules:15: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2946653 and its subdirectories ncbi-seg failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/ncbi-seg_0.0.20000620-7.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/ncbi-seg_0.0.20000620-7.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/ncbi-seg_0.0.20000620-7.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/ncbi-seg_0.0.20000620-7.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/ncbi-seg_0.0.20000620-7_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/ncbi-seg_0.0.20000620-7.diff.gz' Mon Sep 15 16:47:54 UTC 2025 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 83.6% -- replaced with stdout Mon Sep 15 16:47:54 UTC 2025 I: https://tests.reproducible-builds.org/debian/forky/amd64/ncbi-seg : reproducible ➤ FTBFS INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-15 16:47:54] INFO: Starting at 2025-09-15 16:47:54.861843 [2025-09-15 16:47:54] INFO: Generating the pages of 1 package(s) [2025-09-15 16:47:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/ncbi-seg_0.0.20000620-7.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/ncbi-seg_0.0.20000620-7.diff.gz is missing [2025-09-15 16:47:55] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/ncbi-seg didn't produce a buildlog, even though it has been built. [2025-09-15 16:47:55] INFO: Finished at 2025-09-15 16:47:55.134772, took: 0:00:00.272933 Mon Sep 15 16:47:55 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/ncbi-seg.html [2025-09-15 16:47:55] INFO: Starting at 2025-09-15 16:47:55.437723 [2025-09-15 16:47:55] INFO: Scheduling packages in amd64/forky [2025-09-15 16:47:55] INFO: jenkins scheduled in forky/amd64, reason: 'reproducible ➤ FTBFS': ncbi-seg [2025-09-15 16:47:55] INFO: Finished at 2025-09-15 16:47:55.941059, took: 0:00:00.503342 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/ncbi-seg_0.0.20000620-7.rbuild.log: 81.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/ncbi-seg_0.0.20000620-7.rbuild.log.gz [2025-09-15 16:47:56] INFO: Starting at 2025-09-15 16:47:56.255096 [2025-09-15 16:47:56] INFO: Generating the pages of 1 package(s) [2025-09-15 16:47:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/ncbi-seg_0.0.20000620-7.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/ncbi-seg_0.0.20000620-7.diff.gz is missing [2025-09-15 16:47:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/ncbi-seg_0.0.20000620-7.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/ncbi-seg_0.0.20000620-7.diff.gz is missing [2025-09-15 16:47:56] INFO: Finished at 2025-09-15 16:47:56.516004, took: 0:00:00.260911 All cleanup done. Mon Sep 15 16:47:56 UTC 2025 - total duration: 0h 1m 11s. Mon Sep 15 16:47:56 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-9gkp96kf, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 1min 13.258s CPU time consumed: 3.035s Memory peak: 58M (swap: 0B)