Running as unit: rb-build-amd64_31-33683.service ==================================================================================== Sat Feb 22 15:10:56 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_31) on jenkins, called using "ionos11-amd64 ionos5-amd64" as arguments. Sat Feb 22 15:10:56 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-nOlIJAru" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 15:10:56 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sat Feb 22 15:10:56 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-YA4rhq' Sat Feb 22 15:10:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Sat Feb 22 15:10:57 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Ljboaa' ok, let's check if fenicsx-performance-tests is building anywhere yet… ok, fenicsx-performance-tests is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of fenicsx-performance-tests in trixie on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Sat Feb 22 15:11:12 UTC 2025 I: starting to build fenicsx-performance-tests/trixie/amd64 on jenkins on '2025-02-22 15:10' Sat Feb 22 15:11:12 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_31/33683/console.log 1740237072 amd64 trixie fenicsx-performance-tests Sat Feb 22 15:11:12 UTC 2025 I: Downloading source for trixie/fenicsx-performance-tests=0.9.0-2 --2025-02-22 15:11:13-- http://deb.debian.org/debian/pool/main/f/fenicsx-performance-tests/fenicsx-performance-tests_0.9.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2467 (2.4K) [text/prs.lines.tag] Saving to: ‘fenicsx-performance-tests_0.9.0-2.dsc’ 0K .. 100% 310M=0s 2025-02-22 15:11:13 (310 MB/s) - ‘fenicsx-performance-tests_0.9.0-2.dsc’ saved [2467/2467] --2025-02-22 15:11:13-- http://deb.debian.org/debian/pool/main/f/fenicsx-performance-tests/fenicsx-performance-tests_0.9.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2467 (2.4K) [text/prs.lines.tag] Saving to: ‘fenicsx-performance-tests_0.9.0-2.dsc’ 0K .. 100% 310M=0s 2025-02-22 15:11:13 (310 MB/s) - ‘fenicsx-performance-tests_0.9.0-2.dsc’ saved [2467/2467] Sat Feb 22 15:11:13 UTC 2025 I: fenicsx-performance-tests_0.9.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fenicsx-performance-tests Binary: fenicsx-performance-tests, fenicsx-performance-tests-source Architecture: any all Version: 0.9.0-2 Maintainer: Debian Science Maintainers Uploaders: Drew Parsons , Francesco Ballarin Homepage: https://github.com/FEniCS/performance-test Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests Vcs-Git: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.9~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx Package-List: fenicsx-performance-tests deb libdevel optional arch=any fenicsx-performance-tests-source deb libdevel optional arch=all Checksums-Sha1: 0bae6b5b5310de362337f147f3308ab4b450f7cb 21022 fenicsx-performance-tests_0.9.0.orig.tar.gz e42689299be073e6bcdecbdc72343b665b2e4fea 6360 fenicsx-performance-tests_0.9.0-2.debian.tar.xz Checksums-Sha256: d7d39eb7e8964658687ef2240ad79e43392ceaa8c17117bd641b97a726c7d111 21022 fenicsx-performance-tests_0.9.0.orig.tar.gz 6f391125ffb809beae151e8c8411547f5f2fd9627153e1d72396ec1fdc7db738 6360 fenicsx-performance-tests_0.9.0-2.debian.tar.xz Files: e6427a2c02c8364c21d3f31ffafff18b 21022 fenicsx-performance-tests_0.9.0.orig.tar.gz 6a309742bcdb49f72d3fbf49a21e57ad 6360 fenicsx-performance-tests_0.9.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEG10EseUHu/A2aeK4AfNfwz5zr4wFAmcwyAAACgkQAfNfwz5z r4x6+A//d1iYy+wPAYtjIKSLh9RaULqBLOmwY3Gx/WxLSOHvFl2kl6MJmdsPxK9A 31w4hnGNADDYJkTRi9RL1qif7ID+SGLwoFBYvOZVgL0MOVajshwPLMJZeJSRZ03s ojSrH7p90LLXSHE+OgWdDy1XKE9RtB2gmg8gDhmQeTuTOa5Ck+gDrtFCvQQm8RU7 OfBIMsdr6nhcoSkRIUM9nD4Ip+lSyxBmHphVYs46nQkHuBvPfksTGjs0n15J4ist nfXPvkCQcK5jfHbPt0GYZccSFnQkOr1YQDBIGiSwqFI5zazc5Txi2U0cnagmblm9 Y/L9dwkIIRxBzTzBchyN9nifjBtXN2KxWf6YERnTRoCvYSg5JAp8th/MCsGvIS1P t5swOLTHrG+AMVSOrLnleGmqUh6Wqtq6N7/aO50ErWIZqUZM+EZMhH4fDdA9rBfw W56rls4DqqG4q9L5gNJBD+Mb+JxBnrSxTmYmql5FOI8S4/cej8lQr9jcKxSwFD04 vzldYbl8Vx89GZa4qe1wV7Hbj/izvyCjZ+F79PaV1GQ/l8N/hi66vT/yOZOtAdGD BQ5kLlmAiz30kB6xAC/uNaUpdJ9SBUO0WKj/NiaQ9Wnwu2fxzUR2x6hieqrKKECe +77pX4mAdODktGwapB3Vh7rX/ukItzSycNnQzaNmNJj8uOpDLcs= =6WIY -----END PGP SIGNATURE----- Sat Feb 22 15:11:13 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 15:11:13 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sat Feb 22 15:11:13 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sat Feb 22 15:11:13 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sat Feb 22 15:11:13 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-TLo7GQ' ==================================================================================== Sat Feb 22 15:11:14 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 fenicsx-performance-tests trixie /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM 0.9.0-2" as arguments. Sat Feb 22 15:11:14 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-3MTyH0rP" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 15:11:14 UTC 2025 I: Downloading source for trixie/fenicsx-performance-tests=0.9.0-2 Reading package lists... NOTICE: 'fenicsx-performance-tests' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git Please use: git clone https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 29.8 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (dsc) [2467 B] Get:2 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (tar) [21.0 kB] Get:3 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (diff) [6360 B] Fetched 29.8 kB in 0s (1294 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'fenicsx-performance-tests' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git Please use: git clone https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 29.8 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (dsc) [2467 B] Get:2 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (tar) [21.0 kB] Get:3 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (diff) [6360 B] Fetched 29.8 kB in 0s (1294 kB/s) Download complete and in download only mode ============================================================================= Building fenicsx-performance-tests in trixie on amd64 on ionos11-amd64 now. Date: Sat Feb 22 15:11:15 UTC 2025 Date UTC: Sat Feb 22 15:11:15 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 22 03:11:15 -12 2025 I: pbuilder-time-stamp: 1740237075 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.9.0-2.dsc] I: copying [./fenicsx-performance-tests_0.9.0.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.9.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.9.0-2.dsc: unsupported subcommand dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.9.0 dpkg-source: info: unpacking fenicsx-performance-tests_0.9.0.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.9.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2078850/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b9ac3d08dbf449ba82faa1450e64986d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2078850' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/pbuilderrc_XZdh --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b1 --logfile b1/build.log fenicsx-performance-tests_0.9.0-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2078850/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.9~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19808 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 1:0.9~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-real-dev; however: Package libdolfinx-real-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2.10{a} libadios2-mpi-auxiliary-dev{a} libadios2-mpi-c++11-2.10{a} libadios2-mpi-c++11-dev{a} libadios2-mpi-c-2.10{a} libadios2-mpi-core-2.10{a} libadios2-mpi-core-dev{a} libadios2-mpi-plugins{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libbasix-dev{a} libbasix0.9{a} libblas-dev{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.9{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfmt-dev{a} libfmt10{a} libgfortran-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} 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libmagic1t64{a} libmetis5{a} libmumps-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpciaccess0{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libsodium23{a} libspdlog-dev{a} libspdlog1.15{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libz3-4{a} libzmq5{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-ffcx{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix wget xauth zsh 0 packages upgraded, 350 newly installed, 0 to remove and 0 not upgraded. Need to get 289 MB of archives. After unpacking 1355 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 34 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:9.9p2-1 [970 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 65 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 72 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-16 [879 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-16 [11.7 MB] Get: 82 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-16 [13.6 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 84 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 85 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 55.0-1 [62.2 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 55.0-1 [351 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-6 [210 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libadios2-common-c++11-dev all 2.10.2+dfsg1-1 [25.7 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libadios2-common-core-dev amd64 2.10.2+dfsg1-1+b2 [124 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 55.0-1 [70.2 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.6-3 [651 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-21 [23.6 MB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 121 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 55.0-1 [28.5 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 55.0-1 [43.3 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libopenmpi40 amd64 5.0.6-4 [2356 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 132 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-310 amd64 1.14.5+repack-3 [1395 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.46-4 [284 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libpugixml1v5 amd64 1.14-2 [88.6 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b2 [133 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b2 [221 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-plugins amd64 2.10.2+dfsg1-1+b2 [15.4 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-2.10 amd64 2.10.2+dfsg1-1+b2 [1738 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c-2.10 amd64 2.10.2+dfsg1-1+b2 [70.8 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-2.10 amd64 2.10.2+dfsg1-1+b2 [416 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-dev amd64 2.10.2+dfsg1-1+b2 [23.5 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-2.10 amd64 2.10.2+dfsg1-1+b2 [207 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-dev amd64 2.10.2+dfsg1-1+b2 [80.2 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-dev amd64 2.10.2+dfsg1-1+b2 [11.5 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-3 [23.9 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.8.3+dfsg-3 [40.8 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libarpack2t64 amd64 3.9.1-4 [104 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.1-2 [170 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.1-2 [4998 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libarpack2-dev amd64 3.9.1-4 [120 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libbasix0.9 amd64 0.9.0-2+b1 [410 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libbasix-dev amd64 0.9.0-2+b1 [67.1 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.1 [10.6 MB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4.1 [234 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4.1 [235 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-4.1 [240 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83-dev amd64 1.83.0-4.1 [246 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 169 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83.0 amd64 1.83.0-4.1 [230 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83.0 amd64 1.83.0-4.1 [333 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83-dev amd64 1.83.0-4.1 [373 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83-dev amd64 1.83.0-4.1 [239 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 174 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4.1 [282 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83.0 amd64 1.83.0-4.1 [230 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83-dev amd64 1.83.0-4.1 [232 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4.1 [298 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 179 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.1 [330 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-6 [10.4 MB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.1 [346 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.1 [261 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 184 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83.0 amd64 1.83.0-4.1 [523 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83-dev amd64 1.83.0-4.1 [571 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 187 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83.0 amd64 1.83.0-4.1 [271 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 5.0.6-4 [97.1 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libibverbs-dev amd64 55.0-1 [648 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-3 [415 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libltdl-dev amd64 2.5.4-3 [167 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libpmix-dev amd64 5.0.6-3 [3961 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 5.0.6-4 [189 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 libopenmpi-dev amd64 5.0.6-4 [1088 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 mpi-default-dev amd64 1.18 [3372 B] Get: 207 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83-dev amd64 1.83.0-4.1 [290 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 209 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.1 [347 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4.1 [375 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 212 http://deb.debian.org/debian trixie/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 213 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.1 [269 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83-dev amd64 1.83.0-4.1 [276 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 216 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83.0 amd64 1.83.0-4.1 [235 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83-dev amd64 1.83.0-4.1 [236 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 219 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 libbtf2 amd64 1:7.8.3+dfsg-3 [24.8 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 libc6-dbg amd64 2.40-7 [7165 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 libcamd3 amd64 1:7.8.3+dfsg-3 [37.6 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 libccolamd3 amd64 1:7.8.3+dfsg-3 [39.3 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-3 [32.6 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 libcholmod5 amd64 1:7.8.3+dfsg-3 [639 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b2 [265 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB] Get: 230 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 235 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.12.1-2 [483 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libcxsparse4 amd64 1:7.8.3+dfsg-3 [84.1 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 252 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libptscotch-7.0 amd64 7.0.6-1 [660 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5+b1 [611 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 libhypre-2.32.0 amd64 2.32.0-4 [1717 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 libklu2 amd64 1:7.8.3+dfsg-3 [90.7 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get: 259 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi2.2 amd64 2.2.2-1 [1594 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libspqr4 amd64 1:7.8.3+dfsg-3 [146 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [174 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libumfpack6 amd64 1:7.8.3+dfsg-3 [280 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.22 amd64 3.22.2+dfsg1-1+b1 [7850 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 libparpack2t64 amd64 3.9.1-4 [99.8 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.22 amd64 3.22.2+dfsg1-1 [1386 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 libspdlog1.15 amd64 1:1.15.1+ds-1 [108 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 libdolfinx-real0.9 amd64 1:0.9.0-6+b2 [577 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 libldl3 amd64 1:7.8.3+dfsg-3 [24.6 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-3 [47.3 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 librbio4 amd64 1:7.8.3+dfsg-3 [40.0 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 libspex3 amd64 1:7.8.3+dfsg-3 [60.1 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 libparu1 amd64 1:7.8.3+dfsg-3 [65.2 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-3 [1476 kB] Get: 277 http://deb.debian.org/debian trixie/main amd64 libscotch-7.0 amd64 7.0.6-1 [413 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 libscotch-dev amd64 7.0.6-1 [1584 kB] Get: 279 http://deb.debian.org/debian trixie/main amd64 libptscotch-dev amd64 7.0.6-1 [1394 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi-dev amd64 2.2.2-1 [11.1 kB] Get: 281 http://deb.debian.org/debian trixie/main amd64 libscalapack-mpi-dev amd64 2.2.2-1 [6264 B] Get: 282 http://deb.debian.org/debian trixie/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB] Get: 286 http://deb.debian.org/debian trixie/main amd64 opencl-c-headers all 3.0~2024.10.24-2 [46.8 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 opencl-clhpp-headers all 3.0~2024.10.24-2 [50.7 kB] Get: 288 http://deb.debian.org/debian trixie/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b2 [8672 B] Get: 289 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-fortran-310 amd64 1.14.5+repack-3 [113 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 293 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 294 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 295 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 296 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 297 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-dev amd64 1.14.5+repack-3 [3267 kB] Get: 298 http://deb.debian.org/debian trixie/main amd64 libhdf5-mpi-dev amd64 1.14.5+repack-3 [18.7 kB] Get: 299 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [21.9 kB] Get: 300 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5+b1 [904 kB] Get: 301 http://deb.debian.org/debian trixie/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 302 http://deb.debian.org/debian trixie/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 303 http://deb.debian.org/debian trixie/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 304 http://deb.debian.org/debian trixie/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 305 http://deb.debian.org/debian trixie/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 306 http://deb.debian.org/debian trixie/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 307 http://deb.debian.org/debian trixie/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get: 308 http://deb.debian.org/debian trixie/main amd64 libyaml-dev amd64 0.2.5-2 [63.4 kB] Get: 309 http://deb.debian.org/debian trixie/main amd64 libpetsc3.22-dev-common all 3.22.2+dfsg1-1 [311 kB] Get: 310 http://deb.debian.org/debian trixie/main amd64 libhypre-dev amd64 2.32.0-4 [1988 kB] Get: 311 http://deb.debian.org/debian trixie/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 312 http://deb.debian.org/debian trixie/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB] Get: 313 http://deb.debian.org/debian trixie/main amd64 valgrind amd64 1:3.24.0-2 [15.0 MB] Get: 314 http://deb.debian.org/debian trixie/main amd64 valgrind-mpi amd64 1:3.24.0-2 [55.5 kB] Get: 315 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [7948 kB] Get: 316 http://deb.debian.org/debian trixie/main amd64 libparpack2-dev amd64 3.9.1-4 [112 kB] Get: 317 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.22-dev amd64 3.22.2+dfsg1-1 [6394 kB] Get: 318 http://deb.debian.org/debian trixie/main amd64 libdolfinx-real-dev amd64 1:0.9.0-6+b2 [49.0 kB] Get: 319 http://deb.debian.org/debian trixie/main amd64 libpugixml-dev amd64 1.14-2 [109 kB] Get: 320 http://deb.debian.org/debian trixie/main amd64 libfmt-dev amd64 10.1.1+ds1-4 [177 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 libspdlog-dev amd64 1:1.15.1+ds-1 [90.8 kB] Get: 322 http://deb.debian.org/debian trixie/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [795 kB] Get: 323 http://deb.debian.org/debian trixie/main amd64 python3-cffi-backend amd64 1.17.1-2+b1 [96.2 kB] Get: 324 http://deb.debian.org/debian trixie/main amd64 python3-ply all 3.11-7 [62.6 kB] Get: 325 http://deb.debian.org/debian trixie/main amd64 python3-pycparser all 2.22-2 [78.0 kB] Get: 326 http://deb.debian.org/debian trixie/main amd64 python3-cffi all 1.17.1-2 [89.4 kB] Get: 327 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB] Get: 328 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 329 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB] Get: 330 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB] Get: 331 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB] Get: 332 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 333 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 334 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB] Get: 335 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB] Get: 336 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 337 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 338 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 339 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 340 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 341 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 342 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 343 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 344 http://deb.debian.org/debian trixie/main amd64 python3-ufl all 2024.2.0-2 [150 kB] Get: 345 http://deb.debian.org/debian trixie/main amd64 python3-basix amd64 0.9.0-2+b1 [134 kB] Get: 346 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 347 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 348 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 350 http://deb.debian.org/debian trixie/main amd64 libdolfinx-dev amd64 1:0.9.0-6+b2 [202 kB] Fetched 289 MB in 22s (13.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19808 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:amd64 (3.13.2-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20142 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21152 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_amd64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package libproc2-0:amd64. 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Preparing to unpack .../031-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../032-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../033-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../034-libidn2-0_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../035-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../036-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../037-libldap2_2.6.9+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../038-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../039-libnghttp3-9_1.6.0-2_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.6.0-2) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../040-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../041-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../042-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../043-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../044-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../045-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../046-libcurl4t64_8.12.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.12.1-2) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../047-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../048-librhash1_1.4.5-1_amd64.deb ... 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Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 22 15:17:26 UTC 2025. Universal Time is now: Sat Feb 22 15:17:26 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-4.1) ... Setting up libboost-serialization1.83.0:amd64 (1.83.0-4.1) ... Setting up libbtf2:amd64 (1:7.8.3+dfsg-3) ... Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1+b1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.22.0-1+b1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Setting up libmunge2:amd64 (0.5.16-1) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3+b1) ... Setting up libboost-chrono1.83.0t64:amd64 (1.83.0-4.1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libfftw3-quad3:amd64 (3.3.10-2+b1) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up comerr-dev:amd64 (2.1-1.47.2-1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up libssl-dev:amd64 (3.4.1-1) ... Setting up libpng16-16t64:amd64 (1.6.46-4) ... Setting up libhwloc15:amd64 (2.11.2-1) ... Setting up autopoint (0.23.1-1) ... Setting up icu-devtools (72.1-6) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libltdl7:amd64 (2.5.4-3) ... Setting up opencl-c-headers (3.0~2024.10.24-2) ... Setting up libfftw3-double3:amd64 (3.3.10-2+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-16) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-4.1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libnghttp3-dev:amd64 (1.6.0-2) ... Setting up libmumps-headers-dev (5.7.3-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libnl-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.6-4) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-3) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up cmake-data (3.31.5-2) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-4.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libboost-math1.83.0:amd64 (1.83.0-4.1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up valgrind (1:3.24.0-2) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdrm-common (2.4.123-1) ... Setting up valgrind-mpi (1:3.24.0-2) ... Setting up readline-common (8.2-6) ... Setting up libicu-dev:amd64 (72.1-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libfmt10:amd64 (10.1.1+ds1-4) ... Setting up libblas-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-16) ... Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libarpack2t64:amd64 (3.9.1-4) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up libamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-4.1) ... Setting up nettle-dev:amd64 (3.10-1+b1) ... Setting up libyaml-dev:amd64 (0.2.5-2) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-4.1) ... Setting up libtool (2.5.4-3) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libspex3:amd64 (1:7.8.3+dfsg-3) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-3) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libpugixml-dev:amd64 (1.14-2) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-3) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-4.1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-4.1) ... Setting up libcamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-16) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1+b1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.5.4-3) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-4.1) ... Setting up libllvm17t64:amd64 (1:17.0.6-21) ... Setting up librbio4:amd64 (1:7.8.3+dfsg-3) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-4.1) ... Setting up libldap-dev:amd64 (2.6.9+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up opencl-clhpp-headers (3.0~2024.10.24-2) ... Setting up liblapack-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libfmt-dev:amd64 (10.1.1+ds1-4) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.1) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libspdlog1.15:amd64 (1:1.15.1+ds-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b2) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libbasix0.9:amd64 (0.9.0-2+b1) ... Setting up groff-base (1.23.0-7) ... Setting up libhwloc-dev:amd64 (2.11.2-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up gfortran-14 (14.2.0-16) ... Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... Setting up libbasix-dev:amd64 (0.9.0-2+b1) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libpython3.13:amd64 (3.13.2-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-4.1) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libibverbs1:amd64 (55.0-1) ... Setting up libcholmod5:amd64 (1:7.8.3+dfsg-3) ... Setting up libarpack2-dev:amd64 (3.9.1-4) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libzmq5:amd64 (4.3.5-1+b3) ... Setting up ibverbs-providers:amd64 (55.0-1) ... Setting up libspqr4:amd64 (1:7.8.3+dfsg-3) ... Setting up python3.13 (3.13.2-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.1) ... Setting up openssh-client (1:9.9p2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.10-2) ... Setting up python3 (3.13.1-2) ... /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up libspdlog-dev:amd64 (1:1.15.1+ds-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libklu2:amd64 (1:7.8.3+dfsg-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-4) ... Setting up libpython3.13-dev:amd64 (3.13.2-1) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libpmix2t64:amd64 (5.0.6-3) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up libumfpack6:amd64 (1:7.8.3+dfsg-3) ... Setting up librdmacm1t64:amd64 (55.0-1) ... Setting up libpmix-dev:amd64 (5.0.6-3) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-4) ... Setting up libgnutls28-dev:amd64 (3.8.9-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up libpython3-dev:amd64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up libkdb5-10t64:amd64 (1.21.3-4) ... Setting up python3.13-dev (3.13.2-1) ... Setting up python3-ply (3.11-7) ... Setting up python3-typeguard (4.4.1-1) ... Setting up debhelper (13.24.1) ... Setting up libibverbs-dev:amd64 (55.0-1) ... Setting up libparu1:amd64 (1:7.8.3+dfsg-3) ... Setting up python3-pycparser (2.22-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.1-2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ... Setting up cmake (3.31.5-2) ... Setting up krb5-multidev:amd64 (1.21.3-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-ufl (2024.2.0-2) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-3) ... Setting up python3-cffi (1.17.1-2) ... Setting up libkrb5-dev:amd64 (1.21.3-4) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libcurl4-openssl-dev:amd64 (8.12.1-2) ... Setting up python3-basix (0.9.0-2+b1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up python3-ffcx (1:0.9.0-2) ... Setting up libopenmpi40:amd64 (5.0.6-4) ... Setting up libptscotch-7.0:amd64 (7.0.6-1) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b2) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ... Setting up libhdf5-openmpi-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libparpack2t64:amd64 (3.9.1-4) ... Setting up libboost-mpi1.83.0 (1.83.0-4.1) ... Setting up openmpi-bin (5.0.6-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-hl-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-hl-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-hl-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libhdf5-openmpi-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ... Setting up mpi-default-bin (1.18) ... Setting up libhypre-2.32.0:amd64 (2.32.0-4) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libopenmpi-dev:amd64 (5.0.6-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.14.5+repack-3) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libscalapack-openmpi2.2:amd64 (2.2.2-1) ... Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.2-1) ... Setting up mpi-default-dev (1.18) ... Setting up libscalapack-mpi-dev:amd64 (2.2.2-1) ... Setting up libmumps-dev:amd64 (5.7.3-3+b1) ... Setting up libscotch-dev (7.0.6-1) ... Setting up libparpack2-dev:amd64 (3.9.1-4) ... Setting up libpetsc-real3.22:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up libhypre-dev:amd64 (2.32.0-4) ... Setting up libptscotch-dev (7.0.6-1) ... Setting up libboost-mpi1.83-dev (1.83.0-4.1) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libhdf5-mpi-dev:amd64 (1.14.5+repack-3) ... Setting up libpetsc3.22-dev-common (3.22.2+dfsg1-1) ... Setting up libslepc-real3.22 (3.22.2+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up libpetsc-real3.22-dev:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode Setting up libslepc-real3.22-dev (3.22.2+dfsg1-1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up libadios2-mpi-plugins:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-core-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-c++11-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-c-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-auxiliary-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libdolfinx-real0.9:amd64 (1:0.9.0-6+b2) ... Setting up libdolfinx-real-dev:amd64 (1:0.9.0-6+b2) ... Setting up libadios2-mpi-auxiliary-dev:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-core-dev:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-c++11-dev:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libdolfinx-dev:amd64 (1:0.9.0-6+b2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.9.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.2", minimum required is "2.8.1") found components: CXX CMake Warning (dev) at CMakeLists.txt:52 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_program_options-1.83.0 -- [x] libboost_program_options.so.1.83.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -- Configuring done (9.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [ 9%] Generating Elasticity.c [ 18%] Generating Poisson.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Poisson.py ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Elasticity.py cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [ 27%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/main.cpp [ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o [ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o [ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c 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/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp [ 81%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 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/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/Elasticity.c [ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/Poisson.c [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/dolfinx-scaling-test.dir/link.d "CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o" "CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o" -o dolfinx-scaling-test /usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 -lpthread /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.15.1 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== [2025-02-22 03:20:17.247] [RANK: 0] [info] Using partitioner with 69312 cell data [2025-02-22 03:20:17.247] [RANK: 0] [info] Compute partition of cells across ranks [2025-02-22 03:20:17.248] [RANK: 0] [info] Building mesh dual graph [2025-02-22 03:20:17.248] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:17.310] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-02-22 03:20:17.325] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:17.356] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:17.356] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-02-22 03:20:17.469] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) [2025-02-22 03:20:17.469] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-02-22 03:20:29.305] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:20:29.348] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:20:29.411] [RANK: 0] [info] Extract basic topology: 69916->69916 [2025-02-22 03:20:29.411] [RANK: 0] [info] Build local dual graph [2025-02-22 03:20:29.411] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:29.495] [RANK: 0] [info] GPS pseudo-diameter:(119) 603-16248 [2025-02-22 03:20:29.508] [RANK: 0] [info] Create topology (single cell type) [2025-02-22 03:20:29.508] [RANK: 0] [info] Create topology (generalised) [2025-02-22 03:20:29.523] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:20:29.544] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:20:29.655] [RANK: 0] [info] Compute ghost indices [2025-02-22 03:20:29.655] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-02-22 03:20:29.666] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-02-22 03:20:29.711] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:20:29.714] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:20:29.842] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:29.852] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:29.877] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:29.889] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:29.911] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:20:29.915] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:20:29.915] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-02-22 03:20:29.925] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:29.939] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:29.939] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-02-22 03:20:29.981] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:20:29.981] [RANK: 0] [info] Cell type: 0 dofmap: 17479x4 [2025-02-22 03:20:29.985] [RANK: 0] [info] Global index computation [2025-02-22 03:20:29.985] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:20:29.985] [RANK: 0] [info] Get global indices [2025-02-22 03:20:30.036] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:30.052] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times [2025-02-22 03:20:30.101] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-02-22 03:20:30.173] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:30.186] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:30.413] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:30.414] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:30.415] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:20:30.415] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-02-22 03:20:30.417] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:20:30.417] [RANK: 0] [info] Cell type: 0 dofmap: 17479x4 [2025-02-22 03:20:30.420] [RANK: 0] [info] Global index computation [2025-02-22 03:20:30.421] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:20:30.421] [RANK: 0] [info] Get global indices [2025-02-22 03:20:30.456] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:30.456] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:30.464] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:20:30.464] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:20:30.464] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-02-22 03:20:30.524] [RANK: 0] [info] Column ghost size increased from 230 to 553 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- [2025-02-22 03:20:31.073] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 Square graph aggressive coarsening MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 Complexity: grid = 1.0916 operator = 1.37504 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int 216 1 184 0 2532 3 170 37 30000 3 42 21 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.07428 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=216, cols=216, bs=6 package used to perform factorization: petsc total: nonzeros=42696, allocated nonzeros=42696 using I-node routines: found 54 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=216, cols=216, bs=6 total: nonzeros=39744, allocated nonzeros=39744 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 71 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=216, cols=216, bs=6 total: nonzeros=39744, allocated nonzeros=39744 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 71 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.262745, max 2.8902 eigenvalues provided (min 0.0401956, max 2.62745) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=2532, cols=2532, bs=6 total: nonzeros=429624, allocated nonzeros=429624 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 262 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.258328, max 2.84161 eigenvalues provided (min 0.0694389, max 2.58328) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3400 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3400 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 12.870000 12.870000 Build dofmap data | 2 0.070000 0.140000 Build sparsity | 1 0.030000 0.030000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.310000 0.310000 Compute graph partition (SCOTCH) | 1 11.850000 11.850000 Compute local part of mesh dual graph (mixed) | 2 0.080000 0.160000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.180000 0.180000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.110000 0.110000 Distribute row-wise data (scalable) | 1 0.080000 0.080000 GPS: create_level_structure | 6 0.005000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 Init MPI | 1 0.500000 0.500000 Init PETSc | 1 0.160000 0.160000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 3.840000 3.840000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.030000 0.030000 SCOTCH: call SCOTCH_dgraphPart | 1 11.840000 11.840000 SparsityPattern::finalize | 1 0.030000 0.030000 Topology: create | 1 0.400000 0.400000 Topology: determine shared index ownership | 1 0.160000 0.160000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble matrix | 1 0.450000 0.450000 ZZZ Assemble vector | 1 0.030000 0.030000 ZZZ Create Mesh | 1 12.900000 12.900000 ZZZ Create RHS function | 1 0.050000 0.050000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.330000 0.330000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.040000 0.040000 ZZZ FunctionSpace | 1 0.050000 0.050000 ZZZ Solve | 1 3.850000 3.850000 *** Number of Krylov iterations: 19 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:20:34 2025 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 1.773e+01 1.000 1.772e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.164e+08 1.021 2.135e+08 6.404e+08 Flops/sec: 1.221e+07 1.021 1.205e+07 3.614e+07 MPI Msg Count: 8.080e+02 1.041 7.870e+02 2.361e+03 MPI Msg Len (bytes): 7.313e+06 1.341 8.137e+03 1.921e+07 MPI Reductions: 4.630e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.7720e+01 100.0% 6.4041e+08 100.0% 2.361e+03 100.0% 8.137e+03 100.0% 4.450e+02 96.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 109 1.0 4.9097e-01 4.1 0.00e+00 0.0 1.8e+02 4.0e+00 1.1e+02 2 0 8 0 24 2 0 8 0 24 0 BuildTwoSidedF 83 1.0 4.7253e-01 4.8 0.00e+00 0.0 1.1e+02 5.5e+04 8.3e+01 2 0 4 31 18 2 0 4 31 19 0 MatMult 199 1.0 1.1565e+00 1.0 1.17e+08 1.0 1.2e+03 5.8e+03 0.0e+00 6 54 51 36 0 6 54 51 36 0 300 MatMultAdd 40 1.0 1.5110e-01 1.2 9.84e+06 1.0 1.6e+02 1.6e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 191 MatMultTranspose 40 1.0 1.9276e-01 1.2 9.85e+06 1.0 1.6e+02 1.6e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 150 MatSolve 20 0.0 5.1121e-03 0.0 1.70e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 333 MatLUFactorSym 1 1.0 3.3444e-03 141.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.7348e-02 3973.4 5.42e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 313 MatScale 6 1.0 1.0193e-02 5.4 5.94e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 171 MatResidual 40 1.0 2.4838e-01 1.0 2.28e+07 1.0 2.4e+02 5.5e+03 0.0e+00 1 11 10 7 0 1 11 10 7 0 271 MatAssemblyBegin 45 1.0 4.9070e-01 3.5 0.00e+00 0.0 1.1e+02 5.5e+04 2.3e+01 2 0 4 31 5 2 0 4 31 5 0 MatAssemblyEnd 45 1.0 2.6614e-01 1.1 7.75e+04 1.2 1.7e+02 5.1e+02 9.0e+01 1 0 7 0 19 1 0 7 0 20 1 MatGetRowIJ 1 0.0 1.1410e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 1 1.0 6.3032e-02 1.0 0.00e+00 0.0 4.0e+00 3.7e+02 1.5e+01 0 0 0 0 3 0 0 0 0 3 0 MatGetOrdering 1 0.0 2.3133e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 4.7896e-03 1.0 0.00e+00 0.0 1.2e+02 8.2e+02 3.8e+01 0 0 5 1 8 0 0 5 1 9 0 MatZeroEntries 2 1.0 1.2639e-02 38.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.9778e-02 12.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 9.7262e-02 1.3 1.16e+05 1.0 2.4e+01 4.1e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 4 MatTranspose 9 1.0 2.3959e-02 2.2 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 4 1 6 0 0 4 1 6 0 MatMatMultSym 6 1.0 1.8367e-01 1.1 0.00e+00 0.0 6.0e+01 1.1e+04 2.0e+01 1 0 3 3 4 1 0 3 3 4 0 MatMatMultNum 2 1.0 5.2259e-02 1.5 6.83e+06 1.0 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 386 MatPtAPSymbolic 2 1.0 6.4700e-01 1.0 0.00e+00 0.0 6.0e+01 6.1e+04 1.4e+01 4 0 3 19 3 4 0 3 19 3 0 MatPtAPNumeric 2 1.0 6.8538e-01 1.0 5.99e+07 1.1 2.8e+01 1.2e+05 1.2e+01 4 27 1 17 3 4 27 1 17 3 248 MatTrnMatMultSym 1 1.0 1.1746e-01 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 MatGetLocalMat 7 1.0 2.3488e-02 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 1.8940e-02 1.0 0.00e+00 0.0 8.4e+01 4.6e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 MatCreateGraph 2 1.0 2.0079e-01 1.0 1.52e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 2 VecMDot 20 1.0 5.8210e-02 1.2 1.21e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 61 VecTDot 40 1.0 1.5349e-01 1.3 8.16e+05 1.0 0.0e+00 0.0e+00 4.0e+01 1 0 0 0 9 1 0 0 0 9 16 VecNorm 42 1.0 1.3153e-01 1.0 6.50e+05 1.0 0.0e+00 0.0e+00 4.2e+01 1 0 0 0 9 1 0 0 0 9 15 VecScale 22 1.0 3.7321e-04 3.0 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 959 VecCopy 124 1.0 1.8398e-03 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 141 1.0 1.1134e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 40 1.0 2.1809e-03 1.7 7.97e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1075 VecAYPX 258 1.0 7.1761e-03 1.5 2.12e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 876 VecAXPBYCZ 80 1.0 2.6799e-03 1.3 2.20e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2428 VecMAXPY 22 1.0 9.1051e-03 11.4 1.43e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 464 VecAssemblyBegin 61 1.0 3.7485e-02 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 VecAssemblyEnd 61 1.0 8.2234e-03 69.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 182 1.0 6.9874e-03 1.2 1.00e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 424 VecScatterBegin 343 1.0 1.7784e-02 1.7 0.00e+00 0.0 1.8e+03 4.6e+03 0.0e+00 0 0 76 43 0 0 0 76 43 0 0 VecScatterEnd 343 1.0 9.8372e-01 1.1 1.24e+04 1.5 0.0e+00 0.0e+00 0.0e+00 5 0 0 0 0 5 0 0 0 0 0 VecNormalize 22 1.0 4.5353e-02 1.1 3.63e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 24 SFSetGraph 26 1.0 3.3949e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 26 1.0 2.9405e-02 1.4 0.00e+00 0.0 2.5e+02 4.9e+02 2.6e+01 0 0 11 1 6 0 0 11 1 6 0 SFBcastBegin 10 1.0 1.3157e-04 1.2 0.00e+00 0.0 6.0e+01 1.4e+03 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 10 1.0 1.2026e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 3 1.0 1.0222e-04 1.0 0.00e+00 0.0 1.5e+01 6.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 3 1.0 6.4691e-05 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 356 1.0 2.7824e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 356 1.0 9.2442e-04 1.2 1.24e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 34 KSPSetUp 1 1.0 2.2721e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.6691e+00 1.0 1.35e+08 1.0 1.4e+03 4.9e+03 8.0e+01 9 62 59 35 17 9 62 59 35 18 239 KSPGMRESOrthog 20 1.0 6.4603e-02 1.3 2.42e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 111 PCSetUp_GAMG+ 1 1.0 2.1502e+00 1.0 8.18e+07 1.1 9.0e+02 1.3e+04 3.1e+02 12 37 38 59 67 12 37 38 59 70 109 PCGAMGCreateG 2 1.0 2.0084e-01 1.0 1.52e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 2 GAMG Coarsen 4 1.0 1.2516e-01 1.0 0.00e+00 0.0 2.0e+02 7.8e+03 5.5e+01 1 0 8 8 12 1 0 8 8 12 0 GAMG MIS/Agg 2 1.0 1.2257e-01 1.0 0.00e+00 0.0 1.6e+02 8.4e+03 5.1e+01 1 0 7 7 11 1 0 7 7 11 0 PCGAMGProl 2 1.0 6.4806e-02 1.0 0.00e+00 0.0 2.6e+02 3.2e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 GAMG Prol-col 2 1.0 5.3297e-02 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 13 0 GAMG Prol-lift 2 1.0 1.1018e-02 1.0 0.00e+00 0.0 3.6e+01 6.8e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 PCGAMGOptProl 2 1.0 3.6723e-01 1.0 2.17e+07 1.0 1.9e+02 8.8e+03 6.6e+01 2 10 8 9 14 2 10 8 9 15 175 GAMG smooth 2 1.0 1.7558e-01 1.1 7.38e+06 1.0 7.2e+01 1.4e+04 2.4e+01 1 3 3 5 5 1 3 3 5 5 124 PCGAMGCreateL 2 1.0 1.4003e+00 1.0 5.99e+07 1.1 1.1e+02 6.5e+04 6.0e+01 8 27 5 36 13 8 27 5 36 13 121 GAMG PtAP 2 1.0 1.3262e+00 1.0 5.99e+07 1.1 8.8e+01 7.9e+04 2.6e+01 7 27 4 36 6 7 27 4 36 6 128 GAMG Reduce 1 1.0 6.2527e-01 1.0 2.00e+07 1.3 4.7e+01 5.0e+04 4.7e+01 3 9 2 12 10 3 9 2 12 11 87 PCGAMG Squ l00 1 1.0 1.1747e-01 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 PCGAMG Gal l00 1 1.0 7.7619e-01 1.0 4.07e+07 1.1 6.0e+01 7.7e+04 1.3e+01 4 18 3 24 3 4 18 3 24 3 149 PCGAMG Opt l00 1 1.0 8.0373e-02 1.1 5.06e+06 1.0 3.6e+01 2.2e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 187 PCGAMG Gal l01 1 1.0 5.5019e-01 1.0 2.00e+07 1.3 2.8e+01 8.3e+04 1.3e+01 3 9 1 12 3 3 9 1 12 3 99 PCGAMG Opt l01 1 1.0 7.5124e-02 1.1 1.91e+06 1.3 3.6e+01 6.7e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 69 PCSetUp 1 1.0 2.1502e+00 1.0 8.18e+07 1.1 9.0e+02 1.3e+04 3.1e+02 12 37 38 59 67 12 37 38 59 70 109 PCSetUpOnBlocks 20 1.0 2.1302e-02 58.5 5.42e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 255 PCApply 20 1.0 1.3294e+00 1.0 1.17e+08 1.0 1.3e+03 4.5e+03 2.0e+01 7 54 54 30 4 7 54 54 30 4 260 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 11 11 Matrix 82 82 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 60 60 IS L to G Mapping 5 5 Vector 181 181 Star Forest Graph 34 34 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 7.748e-07 Average time for MPI_Barrier(): 6.1604e-06 Average time for zero size MPI_Send(): 4.435e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== elasticity strong scaling (3 processes with ndofs=30000) ==== [2025-02-22 03:20:36.389] [RANK: 0] [info] Using partitioner with 69312 cell data [2025-02-22 03:20:36.390] [RANK: 0] [info] Compute partition of cells across ranks [2025-02-22 03:20:36.390] [RANK: 0] [info] Building mesh dual graph [2025-02-22 03:20:36.390] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:36.464] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-02-22 03:20:36.475] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:36.477] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:36.478] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-02-22 03:20:36.479] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) [2025-02-22 03:20:36.479] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-02-22 03:20:49.458] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:20:49.504] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:20:49.567] [RANK: 0] [info] Extract basic topology: 68440->68440 [2025-02-22 03:20:49.567] [RANK: 0] [info] Build local dual graph [2025-02-22 03:20:49.567] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:49.660] [RANK: 0] [info] GPS pseudo-diameter:(119) 16615-1177 [2025-02-22 03:20:49.673] [RANK: 0] [info] Create topology (single cell type) [2025-02-22 03:20:49.673] [RANK: 0] [info] Create topology (generalised) [2025-02-22 03:20:49.684] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:20:49.696] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:20:49.758] [RANK: 0] [info] Compute ghost indices [2025-02-22 03:20:49.758] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-02-22 03:20:49.764] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-02-22 03:20:49.798] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:20:49.800] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:20:49.910] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:49.924] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:49.936] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:49.952] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:49.986] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:20:49.989] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:20:49.989] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-02-22 03:20:50.009] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.032] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:50.032] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-02-22 03:20:50.101] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:20:50.101] [RANK: 0] [info] Cell type: 0 dofmap: 17110x4 [2025-02-22 03:20:50.110] [RANK: 0] [info] Global index computation [2025-02-22 03:20:50.111] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:20:50.111] [RANK: 0] [info] Get global indices [2025-02-22 03:20:50.160] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.176] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times [2025-02-22 03:20:50.209] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-02-22 03:20:50.235] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.268] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:50.447] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.461] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:50.478] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:20:50.478] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-02-22 03:20:50.479] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:20:50.479] [RANK: 0] [info] Cell type: 0 dofmap: 17110x4 [2025-02-22 03:20:50.482] [RANK: 0] [info] Global index computation [2025-02-22 03:20:50.483] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:20:50.483] [RANK: 0] [info] Get global indices [2025-02-22 03:20:50.531] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.544] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:50.617] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:20:50.617] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:20:50.617] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-02-22 03:20:50.814] [RANK: 0] [info] Column ghost size increased from 226 to 565 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- [2025-02-22 03:20:51.352] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 Square graph aggressive coarsening MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 Complexity: grid = 1.0928 operator = 1.37906 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int 222 1 175 0 2562 3 171 36 30000 3 42 22 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.09116 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=222, cols=222, bs=6 package used to perform factorization: petsc total: nonzeros=42228, allocated nonzeros=42228 using I-node routines: found 62 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=222, cols=222, bs=6 total: nonzeros=38700, allocated nonzeros=38700 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 73 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=222, cols=222, bs=6 total: nonzeros=38700, allocated nonzeros=38700 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 73 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.25788, max 2.83668 eigenvalues provided (min 0.0550126, max 2.5788) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=2562, cols=2562, bs=6 total: nonzeros=435708, allocated nonzeros=435708 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 266 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.257083, max 2.82791 eigenvalues provided (min 0.0723455, max 2.57083) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3345 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3345 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 13.830000 13.830000 Build dofmap data | 2 0.100000 0.200000 Build sparsity | 1 0.030000 0.030000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.270000 0.270000 Compute graph partition (SCOTCH) | 1 13.000000 13.000000 Compute local part of mesh dual graph (mixed) | 2 0.080000 0.160000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.080000 0.080000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.110000 0.110000 Distribute row-wise data (scalable) | 1 0.120000 0.120000 GPS: create_level_structure | 2 0.005000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 Init MPI | 1 0.560000 0.560000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 2.490000 2.490000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 13.000000 13.000000 SparsityPattern::finalize | 1 0.050000 0.050000 Topology: create | 1 0.310000 0.310000 Topology: determine shared index ownership | 1 0.080000 0.080000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble matrix | 1 0.430000 0.430000 ZZZ Assemble vector | 1 0.030000 0.030000 ZZZ Create Mesh | 1 13.830000 13.830000 ZZZ Create RHS function | 1 0.100000 0.100000 ZZZ Create boundary conditions | 1 0.090000 0.090000 ZZZ Create facets and facet->cell connectivity | 1 0.270000 0.270000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.020000 0.020000 ZZZ FunctionSpace | 1 0.100000 0.100000 ZZZ Solve | 1 2.500000 2.500000 *** Number of Krylov iterations: 19 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:20:53 2025 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 1.747e+01 1.000 1.746e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.270e+08 1.103 2.139e+08 6.418e+08 Flops/sec: 1.300e+07 1.104 1.225e+07 3.675e+07 MPI Msg Count: 8.040e+02 1.043 7.823e+02 2.347e+03 MPI Msg Len (bytes): 7.929e+06 1.455 8.193e+03 1.923e+07 MPI Reductions: 4.620e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.7464e+01 100.0% 6.4176e+08 100.0% 2.347e+03 100.0% 8.193e+03 100.0% 4.440e+02 96.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 109 1.0 2.8795e-01 1.9 0.00e+00 0.0 1.8e+02 4.0e+00 1.1e+02 1 0 7 0 24 1 0 7 0 25 0 BuildTwoSidedF 83 1.0 2.8801e-01 1.9 0.00e+00 0.0 9.8e+01 6.0e+04 8.3e+01 1 0 4 31 18 1 0 4 31 19 0 MatMult 199 1.0 7.7451e-01 1.0 1.24e+08 1.1 1.2e+03 5.8e+03 0.0e+00 4 54 51 36 0 4 54 51 36 0 449 MatMultAdd 40 1.0 6.5573e-02 1.1 9.96e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 442 MatMultTranspose 40 1.0 8.2111e-02 1.2 9.98e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 354 MatSolve 20 0.0 3.2926e-03 0.0 1.68e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 512 MatLUFactorSym 1 1.0 6.8091e-03 245.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 4.9271e-03 0.0 5.13e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1041 MatScale 6 1.0 1.7698e-03 1.0 6.02e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 990 MatResidual 40 1.0 1.5977e-01 1.1 2.42e+07 1.1 2.4e+02 5.5e+03 0.0e+00 1 11 10 7 0 1 11 10 7 0 422 MatAssemblyBegin 45 1.0 2.9273e-01 1.7 0.00e+00 0.0 9.8e+01 6.0e+04 2.3e+01 1 0 4 31 5 1 0 4 31 5 0 MatAssemblyEnd 45 1.0 1.3781e-01 1.2 9.68e+04 2.0 1.7e+02 5.2e+02 9.0e+01 1 0 7 0 19 1 0 7 0 20 2 MatGetRowIJ 1 0.0 4.8704e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 1 1.0 2.1605e-02 1.0 0.00e+00 0.0 4.0e+00 3.4e+02 1.5e+01 0 0 0 0 3 0 0 0 0 3 0 MatGetOrdering 1 0.0 1.7221e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 3.9010e-02 1.0 0.00e+00 0.0 1.2e+02 8.5e+02 3.7e+01 0 0 5 1 8 0 0 5 1 8 0 MatZeroEntries 2 1.0 5.4245e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 3.9925e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 4.6699e-02 1.1 1.18e+05 1.0 2.4e+01 4.1e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 7 MatTranspose 9 1.0 3.1360e-02 1.2 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 4 1 6 0 0 4 1 6 0 MatMatMultSym 6 1.0 1.3790e-01 1.3 0.00e+00 0.0 6.0e+01 1.1e+04 2.0e+01 1 0 3 3 4 1 0 3 3 5 0 MatMatMultNum 2 1.0 3.9731e-02 1.1 7.26e+06 1.1 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 510 MatPtAPSymbolic 2 1.0 4.0013e-01 1.0 0.00e+00 0.0 6.0e+01 6.0e+04 1.4e+01 2 0 3 19 3 2 0 3 19 3 0 MatPtAPNumeric 2 1.0 4.4330e-01 1.0 6.31e+07 1.2 2.8e+01 1.2e+05 1.2e+01 3 27 1 17 3 3 27 1 17 3 384 MatTrnMatMultSym 1 1.0 1.1754e-01 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 MatGetLocalMat 7 1.0 9.4871e-03 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 2.2713e-02 1.6 0.00e+00 0.0 8.4e+01 4.5e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 MatCreateGraph 2 1.0 1.2135e-01 1.0 1.56e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 4 VecMDot 20 1.0 3.9715e-02 1.2 1.20e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 5 90 VecTDot 40 1.0 4.6564e-02 1.5 8.03e+05 1.0 0.0e+00 0.0e+00 4.0e+01 0 0 0 0 9 0 0 0 0 9 52 VecNorm 42 1.0 7.2592e-02 1.6 6.40e+05 1.0 0.0e+00 0.0e+00 4.2e+01 0 0 0 0 9 0 0 0 0 9 26 VecScale 22 1.0 2.8881e-04 1.2 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1240 VecCopy 124 1.0 1.4433e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 141 1.0 6.8906e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 40 1.0 1.5792e-03 1.1 7.84e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1485 VecAYPX 258 1.0 8.7055e-03 1.6 2.11e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 723 VecAXPBYCZ 80 1.0 1.0687e-02 6.0 2.19e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 609 VecMAXPY 22 1.0 1.0494e-03 1.4 1.42e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4034 VecAssemblyBegin 61 1.0 3.6358e-02 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 14 0 VecAssemblyEnd 61 1.0 2.0717e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 182 1.0 1.2331e-02 2.9 9.96e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 240 VecScatterBegin 343 1.0 9.4239e-03 1.1 0.00e+00 0.0 1.8e+03 4.6e+03 0.0e+00 0 0 76 43 0 0 0 76 43 0 0 VecScatterEnd 343 1.0 5.2222e-01 1.4 1.32e+04 2.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0 VecNormalize 22 1.0 2.8435e-02 1.3 3.61e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 38 SFSetGraph 26 1.0 4.0982e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 26 1.0 1.9690e-03 1.2 0.00e+00 0.0 2.5e+02 4.9e+02 2.6e+01 0 0 11 1 6 0 0 11 1 6 0 SFBcastBegin 9 1.0 2.5333e-04 1.3 0.00e+00 0.0 5.4e+01 1.5e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 SFBcastEnd 9 1.0 2.0076e-02 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 3 1.0 1.6681e-04 1.2 0.00e+00 0.0 1.5e+01 6.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 3 1.0 7.1208e-05 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 355 1.0 3.1895e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 355 1.0 8.6489e-04 1.4 1.32e+04 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 38 KSPSetUp 1 1.0 1.2292e-02 50.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 9.5038e-01 1.0 1.39e+08 1.1 1.4e+03 4.9e+03 8.0e+01 5 62 59 35 17 5 62 59 35 18 421 KSPGMRESOrthog 20 1.0 4.0804e-02 1.2 2.41e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 5 176 PCSetUp_GAMG+ 1 1.0 1.5212e+00 1.0 8.62e+07 1.2 8.9e+02 1.3e+04 3.1e+02 9 37 38 58 67 9 37 38 58 70 155 PCGAMGCreateG 2 1.0 1.2137e-01 1.0 1.56e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 4 GAMG Coarsen 4 1.0 1.5956e-01 1.0 0.00e+00 0.0 1.9e+02 8.1e+03 5.4e+01 1 0 8 8 12 1 0 8 8 12 0 GAMG MIS/Agg 2 1.0 1.5680e-01 1.0 0.00e+00 0.0 1.6e+02 8.8e+03 5.0e+01 1 0 7 7 11 1 0 7 7 11 0 PCGAMGProl 2 1.0 8.7629e-02 1.0 0.00e+00 0.0 2.6e+02 3.2e+03 7.6e+01 1 0 11 4 16 1 0 11 4 17 0 GAMG Prol-col 2 1.0 5.3058e-02 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 13 0 GAMG Prol-lift 2 1.0 3.3963e-02 1.0 0.00e+00 0.0 3.6e+01 7.0e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 PCGAMGOptProl 2 1.0 2.8009e-01 1.0 2.29e+07 1.1 1.9e+02 8.8e+03 6.6e+01 2 10 8 9 14 2 10 8 9 15 231 GAMG smooth 2 1.0 1.2039e-01 1.1 7.82e+06 1.1 7.2e+01 1.4e+04 2.4e+01 1 3 3 5 5 1 3 3 5 5 182 PCGAMGCreateL 2 1.0 8.5847e-01 1.0 6.31e+07 1.2 1.1e+02 6.5e+04 6.0e+01 5 27 5 36 13 5 27 5 36 14 198 GAMG PtAP 2 1.0 8.3562e-01 1.0 6.31e+07 1.2 8.8e+01 7.8e+04 2.6e+01 5 27 4 36 6 5 27 4 36 6 204 GAMG Reduce 1 1.0 2.4430e-01 1.0 2.33e+07 1.7 4.7e+01 4.5e+04 4.7e+01 1 8 2 11 10 1 8 2 11 11 219 PCGAMG Squ l00 1 1.0 1.1755e-01 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 PCGAMG Gal l00 1 1.0 6.1442e-01 1.0 3.98e+07 1.0 6.0e+01 8.0e+04 1.3e+01 4 18 3 25 3 4 18 3 25 3 190 PCGAMG Opt l00 1 1.0 9.5784e-02 1.1 5.06e+06 1.0 3.6e+01 2.2e+04 1.1e+01 1 2 2 4 2 1 2 2 4 2 157 PCGAMG Gal l01 1 1.0 2.2138e-01 1.0 2.33e+07 1.7 2.8e+01 7.5e+04 1.3e+01 1 8 1 11 3 1 8 1 11 3 241 PCGAMG Opt l01 1 1.0 1.2248e-02 1.0 2.20e+06 1.5 3.6e+01 6.6e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 427 PCSetUp 1 1.0 1.5212e+00 1.0 8.62e+07 1.2 8.9e+02 1.3e+04 3.1e+02 9 37 38 58 67 9 37 38 58 70 155 PCSetUpOnBlocks 20 1.0 1.2334e-02 28.1 5.13e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 416 PCApply 20 1.0 8.2838e-01 1.0 1.21e+08 1.1 1.3e+03 4.5e+03 2.0e+01 5 54 55 30 4 5 54 55 30 5 418 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 11 11 Matrix 82 82 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 60 60 IS L to G Mapping 5 5 Vector 181 181 Star Forest Graph 34 34 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 7.468e-07 Average time for MPI_Barrier(): 1.8984e-06 Average time for zero size MPI_Send(): 3.10233e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== poisson weak scaling (3 processes with ndofs=10000) ==== [2025-02-22 03:20:55.200] [RANK: 0] [info] Using partitioner with 216000 cell data [2025-02-22 03:20:55.212] [RANK: 0] [info] Compute partition of cells across ranks [2025-02-22 03:20:55.212] [RANK: 0] [info] Building mesh dual graph [2025-02-22 03:20:55.212] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:55.418] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-02-22 03:20:55.436] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:55.464] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:55.464] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-02-22 03:20:55.478] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) [2025-02-22 03:20:55.478] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-02-22 03:21:12.498] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:21:12.520] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:21:12.591] [RANK: 0] [info] Extract basic topology: 212928->212928 [2025-02-22 03:21:12.592] [RANK: 0] [info] Build local dual graph [2025-02-22 03:21:12.592] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:21:12.711] [RANK: 0] [info] GPS pseudo-diameter:(169) 1857-51524 [2025-02-22 03:21:12.737] [RANK: 0] [info] Create topology (single cell type) [2025-02-22 03:21:12.737] [RANK: 0] [info] Create topology (generalised) [2025-02-22 03:21:12.870] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:21:12.876] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:21:12.897] [RANK: 0] [info] Compute ghost indices [2025-02-22 03:21:12.897] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-02-22 03:21:12.924] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-02-22 03:21:12.935] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:21:12.935] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:21:12.981] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:12.988] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:12.989] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:12.989] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.017] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:21:13.025] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:21:13.025] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-02-22 03:21:13.045] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.046] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.046] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-02-22 03:21:13.047] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:21:13.048] [RANK: 0] [info] Cell type: 0 dofmap: 53232x4 [2025-02-22 03:21:13.074] [RANK: 0] [info] Global index computation [2025-02-22 03:21:13.074] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:21:13.076] [RANK: 0] [info] Get global indices [2025-02-22 03:21:13.081] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.081] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times [2025-02-22 03:21:13.097] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-02-22 03:21:13.276] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.280] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.499] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.499] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.518] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:21:13.518] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-02-22 03:21:13.526] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:21:13.526] [RANK: 0] [info] Cell type: 0 dofmap: 53232x4 [2025-02-22 03:21:13.549] [RANK: 0] [info] Global index computation [2025-02-22 03:21:13.549] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:21:13.550] [RANK: 0] [info] Get global indices [2025-02-22 03:21:13.565] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.565] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.567] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:21:13.568] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:21:13.568] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-02-22 03:21:13.696] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:21:13.696] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) [2025-02-22 03:21:13.803] [RANK: 0] [info] Column ghost size increased from 475 to 1281 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- [2025-02-22 03:21:14.098] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 17.910000 17.910000 Build dofmap data | 2 0.045000 0.090000 Build sparsity | 1 0.060000 0.060000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.420000 0.420000 Compute graph partition (SCOTCH) | 1 16.990000 16.990000 Compute local part of mesh dual graph (mixed) | 2 0.210000 0.420000 Compute local-to-local map | 1 0.010000 0.010000 Compute non-local part of mesh dual graph | 1 0.070000 0.070000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.140000 0.140000 Distribute row-wise data (scalable) | 1 0.020000 0.020000 GPS: create_level_structure | 5 0.002000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.030000 0.030000 Init MPI | 1 0.490000 0.490000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.030000 0.060000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 1.110000 1.110000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.020000 0.020000 SCOTCH: call SCOTCH_dgraphPart | 1 16.970000 16.970000 SparsityPattern::finalize | 1 0.070000 0.070000 Topology: create | 1 0.250000 0.250000 Topology: determine shared index ownership | 1 0.140000 0.140000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.030000 0.030000 ZZZ Assemble | 1 0.520000 0.520000 ZZZ Assemble matrix | 1 0.250000 0.250000 ZZZ Assemble vector | 1 0.030000 0.030000 ZZZ Create Mesh | 1 17.910000 17.910000 ZZZ Create RHS function | 1 0.110000 0.110000 ZZZ Create boundary conditions | 1 0.020000 0.020000 ZZZ Create facets and facet->cell connectivity | 1 0.420000 0.420000 ZZZ FunctionSpace | 1 0.050000 0.050000 ZZZ Solve | 1 1.130000 1.130000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:21:15 2025 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 2.002e+01 1.000 2.002e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.529e+06 1.024 3.488e+06 1.046e+07 Flops/sec: 1.763e+05 1.024 1.742e+05 5.227e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.985e+05 1.249 5.990e+03 5.391e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.0021e+01 100.0% 1.0465e+07 100.0% 9.000e+01 100.0% 5.990e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 9.2423e-02 48.4 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 BuildTwoSidedF 2 1.0 9.2392e-02 49.8 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.5458e-02 2.1 1.93e+06 1.0 4.2e+01 5.7e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 371 MatConvert 1 1.0 2.0081e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 9.5744e-02 7.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 2.4597e-02 1.6 3.95e+03 1.3 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 0 MatGetRowIJ 4 1.0 8.7270e-05 9.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 8.9449e-04 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 1.1621e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 2.8984e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 9.0097e-03 10.2 3.21e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 106 VecNorm 8 1.0 1.7034e-02 1.9 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 28 VecCopy 2 1.0 1.8677e-04 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 2.9627e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 5.5690e-04 1.3 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1498 VecAYPX 6 1.0 3.7828e-04 1.7 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 945 VecScatterBegin 7 1.0 3.2093e-04 1.1 0.00e+00 0.0 4.2e+01 5.7e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 8.7135e-03 8.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 1.1168e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 3.4549e-04 1.2 0.00e+00 0.0 3.6e+01 8.3e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 8.6785e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 1.4986e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 1.8919e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 5.2255e-01 1.0 2.82e+06 1.0 4.2e+01 5.7e+03 2.4e+01 3 80 47 45 33 3 80 47 45 44 16 PCSetUp 1 1.0 5.9081e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 3 0 0 0 3 3 0 0 0 4 0 PCApply 8 1.0 4.9583e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 1 1 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 1.2023e-06 Average time for MPI_Barrier(): 5.6294e-06 Average time for zero size MPI_Send(): 7.25467e-05 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line ==== poisson strong scaling (3 processes with ndofs=30000) ==== [2025-02-22 03:21:16.615] [RANK: 0] [info] Using partitioner with 216000 cell data [2025-02-22 03:21:16.622] [RANK: 0] [info] Compute partition of cells across ranks [2025-02-22 03:21:16.622] [RANK: 0] [info] Building mesh dual graph [2025-02-22 03:21:16.622] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:21:16.791] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-02-22 03:21:16.819] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:16.819] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:16.819] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-02-22 03:21:16.834] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) [2025-02-22 03:21:16.834] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-02-22 03:21:34.937] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:21:34.960] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:21:35.035] [RANK: 0] [info] Extract basic topology: 212816->212816 [2025-02-22 03:21:35.036] [RANK: 0] [info] Build local dual graph [2025-02-22 03:21:35.036] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:21:35.238] [RANK: 0] [info] GPS pseudo-diameter:(168) 52481-731 [2025-02-22 03:21:35.272] [RANK: 0] [info] Create topology (single cell type) [2025-02-22 03:21:35.272] [RANK: 0] [info] Create topology (generalised) [2025-02-22 03:21:35.289] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:21:35.316] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:21:35.495] [RANK: 0] [info] Compute ghost indices [2025-02-22 03:21:35.495] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-02-22 03:21:35.508] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-02-22 03:21:35.610] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:21:35.620] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:21:35.873] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:35.896] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:35.944] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:35.972] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.058] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:21:36.072] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:21:36.072] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-02-22 03:21:36.087] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.087] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.087] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-02-22 03:21:36.089] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:21:36.089] [RANK: 0] [info] Cell type: 0 dofmap: 53204x4 [2025-02-22 03:21:36.103] [RANK: 0] [info] Global index computation [2025-02-22 03:21:36.104] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:21:36.113] [RANK: 0] [info] Get global indices [2025-02-22 03:21:36.116] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.117] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times [2025-02-22 03:21:36.122] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-02-22 03:21:36.233] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.233] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.365] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.365] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.371] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:21:36.371] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-02-22 03:21:36.377] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:21:36.377] [RANK: 0] [info] Cell type: 0 dofmap: 53204x4 [2025-02-22 03:21:36.388] [RANK: 0] [info] Global index computation [2025-02-22 03:21:36.388] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:21:36.389] [RANK: 0] [info] Get global indices [2025-02-22 03:21:36.391] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.391] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.392] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:21:36.394] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:21:36.394] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-02-22 03:21:36.480] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:21:36.480] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) [2025-02-22 03:21:36.564] [RANK: 0] [info] Column ghost size increased from 456 to 1271 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- [2025-02-22 03:21:36.889] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 19.510000 19.510000 Build dofmap data | 2 0.025000 0.050000 Build sparsity | 1 0.030000 0.030000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.005000 0.010000 Compute entities of dim = 2 | 1 0.250000 0.250000 Compute graph partition (SCOTCH) | 1 18.090000 18.090000 Compute local part of mesh dual graph (mixed) | 2 0.180000 0.360000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.040000 0.040000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.110000 0.110000 Distribute row-wise data (scalable) | 1 0.030000 0.030000 GPS: create_level_structure | 5 0.004000 0.020000 Gibbs-Poole-Stockmeyer ordering | 1 0.040000 0.040000 Init MPI | 1 0.630000 0.630000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.015000 0.030000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 1.010000 1.010000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 18.080000 18.080000 SparsityPattern::finalize | 1 0.070000 0.070000 Topology: create | 1 0.890000 0.890000 Topology: determine shared index ownership | 1 0.290000 0.290000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.020000 0.020000 ZZZ Assemble | 1 0.490000 0.490000 ZZZ Assemble matrix | 1 0.240000 0.240000 ZZZ Assemble vector | 1 0.050000 0.050000 ZZZ Create Mesh | 1 19.510000 19.510000 ZZZ Create RHS function | 1 0.090000 0.090000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.260000 0.260000 ZZZ FunctionSpace | 1 0.020000 0.020000 ZZZ Solve | 1 1.020000 1.020000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:21:37 2025 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 2.130e+01 1.000 2.130e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.558e+06 1.031 3.489e+06 1.047e+07 Flops/sec: 1.671e+05 1.031 1.638e+05 4.914e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.919e+05 1.214 5.874e+03 5.287e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.1297e+01 100.0% 1.0466e+07 100.0% 9.000e+01 100.0% 5.874e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 1.1305e-01 990.5 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 BuildTwoSidedF 2 1.0 1.1314e-01 516.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.2415e-02 1.0 1.95e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 462 MatConvert 1 1.0 3.2827e-02 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 1.1630e-01 9.9 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 2.3899e-02 1.2 3.82e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 0 MatGetRowIJ 4 1.0 1.6938e-05 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 8.3066e-04 6.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 1.3892e-02 4.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 7.1247e-03 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 1.1149e-03 1.7 3.23e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 855 VecNorm 8 1.0 1.1306e-02 9.2 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 42 VecCopy 2 1.0 1.1951e-04 5.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 1.4994e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 8.6036e-03 29.0 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 97 VecAYPX 6 1.0 2.6117e-04 4.3 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1369 VecScatterBegin 7 1.0 3.7247e-04 1.2 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 6.3178e-03 2.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 1.2571e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 2.9344e-04 1.1 0.00e+00 0.0 3.6e+01 8.2e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 9.3811e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 1.8260e-04 129.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 1.4555e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 4.7322e-01 1.0 2.84e+06 1.0 4.2e+01 5.6e+03 2.4e+01 2 80 47 45 33 2 80 47 45 44 18 PCSetUp 1 1.0 5.4211e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 3 0 0 0 3 3 0 0 0 4 0 PCApply 8 1.0 4.4946e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 1 1 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 8.679e-07 Average time for MPI_Barrier(): 5.2024e-06 Average time for zero size MPI_Send(): 6.55467e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: strong source: command line make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.9.0-2_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.9.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.9.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.9.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2078850 and its subdirectories I: Current time: Sat Feb 22 03:22:08 -12 2025 I: pbuilder-time-stamp: 1740237728 Sat Feb 22 15:22:08 UTC 2025 I: Signing ./b1/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo as fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc Sat Feb 22 15:22:08 UTC 2025 I: Signed ./b1/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo as ./b1/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc Sat Feb 22 15:22:08 UTC 2025 - build #1 for fenicsx-performance-tests/trixie/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Sat Feb 22 15:22:08 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-3MTyH0rP, removing. /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 15:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 15:11 b2 -rw-r--r-- 1 jenkins jenkins 2467 Nov 10 15:03 fenicsx-performance-tests_0.9.0-2.dsc -rw------- 1 jenkins jenkins 3691 Feb 22 15:11 rbuildlog.j49b8Ri /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b1: total 6772 -rw-r--r-- 1 jenkins jenkins 287176 Feb 22 15:22 build.log -rw-r--r-- 1 jenkins jenkins 6272668 Feb 22 15:22 fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 18124 Feb 22 15:22 fenicsx-performance-tests-source_0.9.0-2_all.deb -rw-r--r-- 1 jenkins jenkins 6360 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2467 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2.dsc -rw-r--r-- 1 jenkins jenkins 16466 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 17348 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2042 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 285460 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1391 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b2: total 0 Sat Feb 22 15:22:09 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 22 03:11:15 -12 2025 I: pbuilder-time-stamp: 1740237075 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.9.0-2.dsc] I: copying [./fenicsx-performance-tests_0.9.0.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.9.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.9.0-2.dsc: unsupported subcommand dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.9.0 dpkg-source: info: unpacking fenicsx-performance-tests_0.9.0.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.9.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2078850/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b9ac3d08dbf449ba82faa1450e64986d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2078850' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/pbuilderrc_XZdh --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b1 --logfile b1/build.log fenicsx-performance-tests_0.9.0-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2078850/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.9~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19808 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 1:0.9~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-real-dev; however: Package libdolfinx-real-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2.10{a} libadios2-mpi-auxiliary-dev{a} libadios2-mpi-c++11-2.10{a} libadios2-mpi-c++11-dev{a} libadios2-mpi-c-2.10{a} libadios2-mpi-core-2.10{a} libadios2-mpi-core-dev{a} libadios2-mpi-plugins{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libbasix-dev{a} libbasix0.9{a} libblas-dev{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.9{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfmt-dev{a} libfmt10{a} libgfortran-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-mpi-dev{a} libhdf5-openmpi-310{a} libhdf5-openmpi-cpp-310{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-310{a} libhdf5-openmpi-hl-310{a} libhdf5-openmpi-hl-cpp-310{a} libhdf5-openmpi-hl-fortran-310{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.32.0{a} libhypre-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-dev{a} libldap2{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmumps-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpciaccess0{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libsodium23{a} libspdlog-dev{a} libspdlog1.15{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libz3-4{a} libzmq5{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-ffcx{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix wget xauth zsh 0 packages upgraded, 350 newly installed, 0 to remove and 0 not upgraded. Need to get 289 MB of archives. After unpacking 1355 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 34 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:9.9p2-1 [970 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 65 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 72 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-16 [879 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-16 [11.7 MB] Get: 82 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-16 [13.6 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 84 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 85 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 55.0-1 [62.2 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 55.0-1 [351 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-6 [210 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libadios2-common-c++11-dev all 2.10.2+dfsg1-1 [25.7 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libadios2-common-core-dev amd64 2.10.2+dfsg1-1+b2 [124 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 55.0-1 [70.2 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.6-3 [651 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-21 [23.6 MB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 121 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 55.0-1 [28.5 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 55.0-1 [43.3 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libopenmpi40 amd64 5.0.6-4 [2356 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 132 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-310 amd64 1.14.5+repack-3 [1395 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.46-4 [284 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libpugixml1v5 amd64 1.14-2 [88.6 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b2 [133 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b2 [221 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-plugins amd64 2.10.2+dfsg1-1+b2 [15.4 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-2.10 amd64 2.10.2+dfsg1-1+b2 [1738 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c-2.10 amd64 2.10.2+dfsg1-1+b2 [70.8 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-2.10 amd64 2.10.2+dfsg1-1+b2 [416 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-dev amd64 2.10.2+dfsg1-1+b2 [23.5 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-2.10 amd64 2.10.2+dfsg1-1+b2 [207 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-dev amd64 2.10.2+dfsg1-1+b2 [80.2 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-dev amd64 2.10.2+dfsg1-1+b2 [11.5 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-3 [23.9 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.8.3+dfsg-3 [40.8 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libarpack2t64 amd64 3.9.1-4 [104 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.1-2 [170 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.1-2 [4998 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libarpack2-dev amd64 3.9.1-4 [120 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libbasix0.9 amd64 0.9.0-2+b1 [410 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libbasix-dev amd64 0.9.0-2+b1 [67.1 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.1 [10.6 MB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4.1 [234 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4.1 [235 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-4.1 [240 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83-dev amd64 1.83.0-4.1 [246 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 169 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83.0 amd64 1.83.0-4.1 [230 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83.0 amd64 1.83.0-4.1 [333 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83-dev amd64 1.83.0-4.1 [373 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83-dev amd64 1.83.0-4.1 [239 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 174 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4.1 [282 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83.0 amd64 1.83.0-4.1 [230 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83-dev amd64 1.83.0-4.1 [232 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4.1 [298 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 179 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.1 [330 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-6 [10.4 MB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.1 [346 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.1 [261 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 184 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83.0 amd64 1.83.0-4.1 [523 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83-dev amd64 1.83.0-4.1 [571 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 187 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83.0 amd64 1.83.0-4.1 [271 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 5.0.6-4 [97.1 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libibverbs-dev amd64 55.0-1 [648 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-3 [415 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libltdl-dev amd64 2.5.4-3 [167 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libpmix-dev amd64 5.0.6-3 [3961 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 5.0.6-4 [189 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 libopenmpi-dev amd64 5.0.6-4 [1088 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 mpi-default-dev amd64 1.18 [3372 B] Get: 207 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83-dev amd64 1.83.0-4.1 [290 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 209 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.1 [347 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4.1 [375 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 212 http://deb.debian.org/debian trixie/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 213 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.1 [269 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83-dev amd64 1.83.0-4.1 [276 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 216 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83.0 amd64 1.83.0-4.1 [235 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83-dev amd64 1.83.0-4.1 [236 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 219 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 libbtf2 amd64 1:7.8.3+dfsg-3 [24.8 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 libc6-dbg amd64 2.40-7 [7165 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 libcamd3 amd64 1:7.8.3+dfsg-3 [37.6 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 libccolamd3 amd64 1:7.8.3+dfsg-3 [39.3 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-3 [32.6 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 libcholmod5 amd64 1:7.8.3+dfsg-3 [639 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b2 [265 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB] Get: 230 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 235 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.12.1-2 [483 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libcxsparse4 amd64 1:7.8.3+dfsg-3 [84.1 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 252 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libptscotch-7.0 amd64 7.0.6-1 [660 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5+b1 [611 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 libhypre-2.32.0 amd64 2.32.0-4 [1717 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 libklu2 amd64 1:7.8.3+dfsg-3 [90.7 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get: 259 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi2.2 amd64 2.2.2-1 [1594 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libspqr4 amd64 1:7.8.3+dfsg-3 [146 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [174 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libumfpack6 amd64 1:7.8.3+dfsg-3 [280 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.22 amd64 3.22.2+dfsg1-1+b1 [7850 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 libparpack2t64 amd64 3.9.1-4 [99.8 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.22 amd64 3.22.2+dfsg1-1 [1386 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 libspdlog1.15 amd64 1:1.15.1+ds-1 [108 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 libdolfinx-real0.9 amd64 1:0.9.0-6+b2 [577 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 libldl3 amd64 1:7.8.3+dfsg-3 [24.6 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-3 [47.3 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 librbio4 amd64 1:7.8.3+dfsg-3 [40.0 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 libspex3 amd64 1:7.8.3+dfsg-3 [60.1 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 libparu1 amd64 1:7.8.3+dfsg-3 [65.2 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-3 [1476 kB] Get: 277 http://deb.debian.org/debian trixie/main amd64 libscotch-7.0 amd64 7.0.6-1 [413 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 libscotch-dev amd64 7.0.6-1 [1584 kB] Get: 279 http://deb.debian.org/debian trixie/main amd64 libptscotch-dev amd64 7.0.6-1 [1394 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi-dev amd64 2.2.2-1 [11.1 kB] Get: 281 http://deb.debian.org/debian trixie/main amd64 libscalapack-mpi-dev amd64 2.2.2-1 [6264 B] Get: 282 http://deb.debian.org/debian trixie/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB] Get: 286 http://deb.debian.org/debian trixie/main amd64 opencl-c-headers all 3.0~2024.10.24-2 [46.8 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 opencl-clhpp-headers all 3.0~2024.10.24-2 [50.7 kB] Get: 288 http://deb.debian.org/debian trixie/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b2 [8672 B] Get: 289 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-fortran-310 amd64 1.14.5+repack-3 [113 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 293 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 294 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 295 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 296 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 297 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-dev amd64 1.14.5+repack-3 [3267 kB] Get: 298 http://deb.debian.org/debian trixie/main amd64 libhdf5-mpi-dev amd64 1.14.5+repack-3 [18.7 kB] Get: 299 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [21.9 kB] Get: 300 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5+b1 [904 kB] Get: 301 http://deb.debian.org/debian trixie/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 302 http://deb.debian.org/debian trixie/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 303 http://deb.debian.org/debian trixie/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 304 http://deb.debian.org/debian trixie/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 305 http://deb.debian.org/debian trixie/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 306 http://deb.debian.org/debian trixie/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 307 http://deb.debian.org/debian trixie/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get: 308 http://deb.debian.org/debian trixie/main amd64 libyaml-dev amd64 0.2.5-2 [63.4 kB] Get: 309 http://deb.debian.org/debian trixie/main amd64 libpetsc3.22-dev-common all 3.22.2+dfsg1-1 [311 kB] Get: 310 http://deb.debian.org/debian trixie/main amd64 libhypre-dev amd64 2.32.0-4 [1988 kB] Get: 311 http://deb.debian.org/debian trixie/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 312 http://deb.debian.org/debian trixie/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB] Get: 313 http://deb.debian.org/debian trixie/main amd64 valgrind amd64 1:3.24.0-2 [15.0 MB] Get: 314 http://deb.debian.org/debian trixie/main amd64 valgrind-mpi amd64 1:3.24.0-2 [55.5 kB] Get: 315 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [7948 kB] Get: 316 http://deb.debian.org/debian trixie/main amd64 libparpack2-dev amd64 3.9.1-4 [112 kB] Get: 317 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.22-dev amd64 3.22.2+dfsg1-1 [6394 kB] Get: 318 http://deb.debian.org/debian trixie/main amd64 libdolfinx-real-dev amd64 1:0.9.0-6+b2 [49.0 kB] Get: 319 http://deb.debian.org/debian trixie/main amd64 libpugixml-dev amd64 1.14-2 [109 kB] Get: 320 http://deb.debian.org/debian trixie/main amd64 libfmt-dev amd64 10.1.1+ds1-4 [177 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 libspdlog-dev amd64 1:1.15.1+ds-1 [90.8 kB] Get: 322 http://deb.debian.org/debian trixie/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [795 kB] Get: 323 http://deb.debian.org/debian trixie/main amd64 python3-cffi-backend amd64 1.17.1-2+b1 [96.2 kB] Get: 324 http://deb.debian.org/debian trixie/main amd64 python3-ply all 3.11-7 [62.6 kB] Get: 325 http://deb.debian.org/debian trixie/main amd64 python3-pycparser all 2.22-2 [78.0 kB] Get: 326 http://deb.debian.org/debian trixie/main amd64 python3-cffi all 1.17.1-2 [89.4 kB] Get: 327 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB] Get: 328 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 329 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB] Get: 330 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB] Get: 331 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB] Get: 332 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 333 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 334 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB] Get: 335 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB] Get: 336 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 337 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 338 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 339 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 340 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 341 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 342 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 343 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 344 http://deb.debian.org/debian trixie/main amd64 python3-ufl all 2024.2.0-2 [150 kB] Get: 345 http://deb.debian.org/debian trixie/main amd64 python3-basix amd64 0.9.0-2+b1 [134 kB] Get: 346 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 347 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 348 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 350 http://deb.debian.org/debian trixie/main amd64 libdolfinx-dev amd64 1:0.9.0-6+b2 [202 kB] Fetched 289 MB in 22s (13.3 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up opencl-c-headers (3.0~2024.10.24-2) ... Setting up libfftw3-double3:amd64 (3.3.10-2+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-16) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-4.1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libnghttp3-dev:amd64 (1.6.0-2) ... Setting up libmumps-headers-dev (5.7.3-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libnl-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.6-4) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-3) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up cmake-data (3.31.5-2) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-4.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libboost-math1.83.0:amd64 (1.83.0-4.1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up valgrind (1:3.24.0-2) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdrm-common (2.4.123-1) ... Setting up valgrind-mpi (1:3.24.0-2) ... Setting up readline-common (8.2-6) ... Setting up libicu-dev:amd64 (72.1-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libfmt10:amd64 (10.1.1+ds1-4) ... Setting up libblas-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-16) ... Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libarpack2t64:amd64 (3.9.1-4) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up libamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-4.1) ... Setting up nettle-dev:amd64 (3.10-1+b1) ... Setting up libyaml-dev:amd64 (0.2.5-2) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-4.1) ... Setting up libtool (2.5.4-3) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libspex3:amd64 (1:7.8.3+dfsg-3) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-3) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libpugixml-dev:amd64 (1.14-2) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-3) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-4.1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-4.1) ... Setting up libcamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-16) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1+b1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.5.4-3) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-4.1) ... Setting up libllvm17t64:amd64 (1:17.0.6-21) ... Setting up librbio4:amd64 (1:7.8.3+dfsg-3) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-4.1) ... Setting up libldap-dev:amd64 (2.6.9+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up opencl-clhpp-headers (3.0~2024.10.24-2) ... Setting up liblapack-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libfmt-dev:amd64 (10.1.1+ds1-4) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.1) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libspdlog1.15:amd64 (1:1.15.1+ds-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b2) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libbasix0.9:amd64 (0.9.0-2+b1) ... Setting up groff-base (1.23.0-7) ... Setting up libhwloc-dev:amd64 (2.11.2-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up gfortran-14 (14.2.0-16) ... Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... Setting up libbasix-dev:amd64 (0.9.0-2+b1) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libpython3.13:amd64 (3.13.2-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-4.1) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libibverbs1:amd64 (55.0-1) ... Setting up libcholmod5:amd64 (1:7.8.3+dfsg-3) ... Setting up libarpack2-dev:amd64 (3.9.1-4) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libzmq5:amd64 (4.3.5-1+b3) ... Setting up ibverbs-providers:amd64 (55.0-1) ... Setting up libspqr4:amd64 (1:7.8.3+dfsg-3) ... Setting up python3.13 (3.13.2-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.1) ... Setting up openssh-client (1:9.9p2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.10-2) ... Setting up python3 (3.13.1-2) ... /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up libspdlog-dev:amd64 (1:1.15.1+ds-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libklu2:amd64 (1:7.8.3+dfsg-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-4) ... Setting up libpython3.13-dev:amd64 (3.13.2-1) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libpmix2t64:amd64 (5.0.6-3) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up libumfpack6:amd64 (1:7.8.3+dfsg-3) ... Setting up librdmacm1t64:amd64 (55.0-1) ... Setting up libpmix-dev:amd64 (5.0.6-3) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-4) ... Setting up libgnutls28-dev:amd64 (3.8.9-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up libpython3-dev:amd64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up libkdb5-10t64:amd64 (1.21.3-4) ... Setting up python3.13-dev (3.13.2-1) ... Setting up python3-ply (3.11-7) ... Setting up python3-typeguard (4.4.1-1) ... Setting up debhelper (13.24.1) ... Setting up libibverbs-dev:amd64 (55.0-1) ... Setting up libparu1:amd64 (1:7.8.3+dfsg-3) ... Setting up python3-pycparser (2.22-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.1-2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ... Setting up cmake (3.31.5-2) ... Setting up krb5-multidev:amd64 (1.21.3-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-ufl (2024.2.0-2) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-3) ... Setting up python3-cffi (1.17.1-2) ... Setting up libkrb5-dev:amd64 (1.21.3-4) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libcurl4-openssl-dev:amd64 (8.12.1-2) ... Setting up python3-basix (0.9.0-2+b1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up python3-ffcx (1:0.9.0-2) ... Setting up libopenmpi40:amd64 (5.0.6-4) ... Setting up libptscotch-7.0:amd64 (7.0.6-1) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b2) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ... Setting up libhdf5-openmpi-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libparpack2t64:amd64 (3.9.1-4) ... Setting up libboost-mpi1.83.0 (1.83.0-4.1) ... Setting up openmpi-bin (5.0.6-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-hl-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-hl-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-hl-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libhdf5-openmpi-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ... Setting up mpi-default-bin (1.18) ... Setting up libhypre-2.32.0:amd64 (2.32.0-4) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libopenmpi-dev:amd64 (5.0.6-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.14.5+repack-3) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libscalapack-openmpi2.2:amd64 (2.2.2-1) ... Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.2-1) ... Setting up mpi-default-dev (1.18) ... Setting up libscalapack-mpi-dev:amd64 (2.2.2-1) ... Setting up libmumps-dev:amd64 (5.7.3-3+b1) ... Setting up libscotch-dev (7.0.6-1) ... Setting up libparpack2-dev:amd64 (3.9.1-4) ... Setting up libpetsc-real3.22:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up libhypre-dev:amd64 (2.32.0-4) ... Setting up libptscotch-dev (7.0.6-1) ... Setting up libboost-mpi1.83-dev (1.83.0-4.1) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libhdf5-mpi-dev:amd64 (1.14.5+repack-3) ... Setting up libpetsc3.22-dev-common (3.22.2+dfsg1-1) ... Setting up libslepc-real3.22 (3.22.2+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up libpetsc-real3.22-dev:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode Setting up libslepc-real3.22-dev (3.22.2+dfsg1-1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up libadios2-mpi-plugins:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-core-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-c++11-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-c-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-auxiliary-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libdolfinx-real0.9:amd64 (1:0.9.0-6+b2) ... Setting up libdolfinx-real-dev:amd64 (1:0.9.0-6+b2) ... Setting up libadios2-mpi-auxiliary-dev:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-core-dev:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-c++11-dev:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libdolfinx-dev:amd64 (1:0.9.0-6+b2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.9.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.2", minimum required is "2.8.1") found components: CXX CMake Warning (dev) at CMakeLists.txt:52 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_program_options-1.83.0 -- [x] libboost_program_options.so.1.83.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -- Configuring done (9.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [ 9%] Generating Elasticity.c [ 18%] Generating Poisson.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Poisson.py ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Elasticity.py cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [ 27%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/main.cpp [ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o [ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o [ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp [ 81%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/Elasticity.c [ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/Poisson.c [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/dolfinx-scaling-test.dir/link.d "CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o" "CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o" -o dolfinx-scaling-test /usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 -lpthread /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.15.1 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== [2025-02-22 03:20:17.247] [RANK: 0] [info] Using partitioner with 69312 cell data [2025-02-22 03:20:17.247] [RANK: 0] [info] Compute partition of cells across ranks [2025-02-22 03:20:17.248] [RANK: 0] [info] Building mesh dual graph [2025-02-22 03:20:17.248] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:17.310] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-02-22 03:20:17.325] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:17.356] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:17.356] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-02-22 03:20:17.469] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) [2025-02-22 03:20:17.469] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-02-22 03:20:29.305] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:20:29.348] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:20:29.411] [RANK: 0] [info] Extract basic topology: 69916->69916 [2025-02-22 03:20:29.411] [RANK: 0] [info] Build local dual graph [2025-02-22 03:20:29.411] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:29.495] [RANK: 0] [info] GPS pseudo-diameter:(119) 603-16248 [2025-02-22 03:20:29.508] [RANK: 0] [info] Create topology (single cell type) [2025-02-22 03:20:29.508] [RANK: 0] [info] Create topology (generalised) [2025-02-22 03:20:29.523] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:20:29.544] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:20:29.655] [RANK: 0] [info] Compute ghost indices [2025-02-22 03:20:29.655] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-02-22 03:20:29.666] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-02-22 03:20:29.711] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:20:29.714] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:20:29.842] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:29.852] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:29.877] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:29.889] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:29.911] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:20:29.915] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:20:29.915] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-02-22 03:20:29.925] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:29.939] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:29.939] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-02-22 03:20:29.981] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:20:29.981] [RANK: 0] [info] Cell type: 0 dofmap: 17479x4 [2025-02-22 03:20:29.985] [RANK: 0] [info] Global index computation [2025-02-22 03:20:29.985] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:20:29.985] [RANK: 0] [info] Get global indices [2025-02-22 03:20:30.036] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:30.052] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times [2025-02-22 03:20:30.101] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-02-22 03:20:30.173] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:30.186] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:30.413] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:30.414] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:30.415] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:20:30.415] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-02-22 03:20:30.417] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:20:30.417] [RANK: 0] [info] Cell type: 0 dofmap: 17479x4 [2025-02-22 03:20:30.420] [RANK: 0] [info] Global index computation [2025-02-22 03:20:30.421] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:20:30.421] [RANK: 0] [info] Get global indices [2025-02-22 03:20:30.456] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:30.456] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:30.464] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:20:30.464] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:20:30.464] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-02-22 03:20:30.524] [RANK: 0] [info] Column ghost size increased from 230 to 553 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- [2025-02-22 03:20:31.073] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 Square graph aggressive coarsening MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 Complexity: grid = 1.0916 operator = 1.37504 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int 216 1 184 0 2532 3 170 37 30000 3 42 21 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.07428 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=216, cols=216, bs=6 package used to perform factorization: petsc total: nonzeros=42696, allocated nonzeros=42696 using I-node routines: found 54 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=216, cols=216, bs=6 total: nonzeros=39744, allocated nonzeros=39744 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 71 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=216, cols=216, bs=6 total: nonzeros=39744, allocated nonzeros=39744 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 71 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.262745, max 2.8902 eigenvalues provided (min 0.0401956, max 2.62745) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=2532, cols=2532, bs=6 total: nonzeros=429624, allocated nonzeros=429624 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 262 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.258328, max 2.84161 eigenvalues provided (min 0.0694389, max 2.58328) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3400 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3400 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 12.870000 12.870000 Build dofmap data | 2 0.070000 0.140000 Build sparsity | 1 0.030000 0.030000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.310000 0.310000 Compute graph partition (SCOTCH) | 1 11.850000 11.850000 Compute local part of mesh dual graph (mixed) | 2 0.080000 0.160000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.180000 0.180000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.110000 0.110000 Distribute row-wise data (scalable) | 1 0.080000 0.080000 GPS: create_level_structure | 6 0.005000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 Init MPI | 1 0.500000 0.500000 Init PETSc | 1 0.160000 0.160000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 3.840000 3.840000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.030000 0.030000 SCOTCH: call SCOTCH_dgraphPart | 1 11.840000 11.840000 SparsityPattern::finalize | 1 0.030000 0.030000 Topology: create | 1 0.400000 0.400000 Topology: determine shared index ownership | 1 0.160000 0.160000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble matrix | 1 0.450000 0.450000 ZZZ Assemble vector | 1 0.030000 0.030000 ZZZ Create Mesh | 1 12.900000 12.900000 ZZZ Create RHS function | 1 0.050000 0.050000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.330000 0.330000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.040000 0.040000 ZZZ FunctionSpace | 1 0.050000 0.050000 ZZZ Solve | 1 3.850000 3.850000 *** Number of Krylov iterations: 19 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:20:34 2025 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 1.773e+01 1.000 1.772e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.164e+08 1.021 2.135e+08 6.404e+08 Flops/sec: 1.221e+07 1.021 1.205e+07 3.614e+07 MPI Msg Count: 8.080e+02 1.041 7.870e+02 2.361e+03 MPI Msg Len (bytes): 7.313e+06 1.341 8.137e+03 1.921e+07 MPI Reductions: 4.630e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.7720e+01 100.0% 6.4041e+08 100.0% 2.361e+03 100.0% 8.137e+03 100.0% 4.450e+02 96.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 109 1.0 4.9097e-01 4.1 0.00e+00 0.0 1.8e+02 4.0e+00 1.1e+02 2 0 8 0 24 2 0 8 0 24 0 BuildTwoSidedF 83 1.0 4.7253e-01 4.8 0.00e+00 0.0 1.1e+02 5.5e+04 8.3e+01 2 0 4 31 18 2 0 4 31 19 0 MatMult 199 1.0 1.1565e+00 1.0 1.17e+08 1.0 1.2e+03 5.8e+03 0.0e+00 6 54 51 36 0 6 54 51 36 0 300 MatMultAdd 40 1.0 1.5110e-01 1.2 9.84e+06 1.0 1.6e+02 1.6e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 191 MatMultTranspose 40 1.0 1.9276e-01 1.2 9.85e+06 1.0 1.6e+02 1.6e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 150 MatSolve 20 0.0 5.1121e-03 0.0 1.70e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 333 MatLUFactorSym 1 1.0 3.3444e-03 141.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.7348e-02 3973.4 5.42e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 313 MatScale 6 1.0 1.0193e-02 5.4 5.94e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 171 MatResidual 40 1.0 2.4838e-01 1.0 2.28e+07 1.0 2.4e+02 5.5e+03 0.0e+00 1 11 10 7 0 1 11 10 7 0 271 MatAssemblyBegin 45 1.0 4.9070e-01 3.5 0.00e+00 0.0 1.1e+02 5.5e+04 2.3e+01 2 0 4 31 5 2 0 4 31 5 0 MatAssemblyEnd 45 1.0 2.6614e-01 1.1 7.75e+04 1.2 1.7e+02 5.1e+02 9.0e+01 1 0 7 0 19 1 0 7 0 20 1 MatGetRowIJ 1 0.0 1.1410e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 1 1.0 6.3032e-02 1.0 0.00e+00 0.0 4.0e+00 3.7e+02 1.5e+01 0 0 0 0 3 0 0 0 0 3 0 MatGetOrdering 1 0.0 2.3133e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 4.7896e-03 1.0 0.00e+00 0.0 1.2e+02 8.2e+02 3.8e+01 0 0 5 1 8 0 0 5 1 9 0 MatZeroEntries 2 1.0 1.2639e-02 38.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.9778e-02 12.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 9.7262e-02 1.3 1.16e+05 1.0 2.4e+01 4.1e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 4 MatTranspose 9 1.0 2.3959e-02 2.2 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 4 1 6 0 0 4 1 6 0 MatMatMultSym 6 1.0 1.8367e-01 1.1 0.00e+00 0.0 6.0e+01 1.1e+04 2.0e+01 1 0 3 3 4 1 0 3 3 4 0 MatMatMultNum 2 1.0 5.2259e-02 1.5 6.83e+06 1.0 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 386 MatPtAPSymbolic 2 1.0 6.4700e-01 1.0 0.00e+00 0.0 6.0e+01 6.1e+04 1.4e+01 4 0 3 19 3 4 0 3 19 3 0 MatPtAPNumeric 2 1.0 6.8538e-01 1.0 5.99e+07 1.1 2.8e+01 1.2e+05 1.2e+01 4 27 1 17 3 4 27 1 17 3 248 MatTrnMatMultSym 1 1.0 1.1746e-01 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 MatGetLocalMat 7 1.0 2.3488e-02 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 1.8940e-02 1.0 0.00e+00 0.0 8.4e+01 4.6e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 MatCreateGraph 2 1.0 2.0079e-01 1.0 1.52e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 2 VecMDot 20 1.0 5.8210e-02 1.2 1.21e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 61 VecTDot 40 1.0 1.5349e-01 1.3 8.16e+05 1.0 0.0e+00 0.0e+00 4.0e+01 1 0 0 0 9 1 0 0 0 9 16 VecNorm 42 1.0 1.3153e-01 1.0 6.50e+05 1.0 0.0e+00 0.0e+00 4.2e+01 1 0 0 0 9 1 0 0 0 9 15 VecScale 22 1.0 3.7321e-04 3.0 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 959 VecCopy 124 1.0 1.8398e-03 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 141 1.0 1.1134e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 40 1.0 2.1809e-03 1.7 7.97e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1075 VecAYPX 258 1.0 7.1761e-03 1.5 2.12e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 876 VecAXPBYCZ 80 1.0 2.6799e-03 1.3 2.20e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2428 VecMAXPY 22 1.0 9.1051e-03 11.4 1.43e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 464 VecAssemblyBegin 61 1.0 3.7485e-02 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 VecAssemblyEnd 61 1.0 8.2234e-03 69.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 182 1.0 6.9874e-03 1.2 1.00e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 424 VecScatterBegin 343 1.0 1.7784e-02 1.7 0.00e+00 0.0 1.8e+03 4.6e+03 0.0e+00 0 0 76 43 0 0 0 76 43 0 0 VecScatterEnd 343 1.0 9.8372e-01 1.1 1.24e+04 1.5 0.0e+00 0.0e+00 0.0e+00 5 0 0 0 0 5 0 0 0 0 0 VecNormalize 22 1.0 4.5353e-02 1.1 3.63e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 24 SFSetGraph 26 1.0 3.3949e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 26 1.0 2.9405e-02 1.4 0.00e+00 0.0 2.5e+02 4.9e+02 2.6e+01 0 0 11 1 6 0 0 11 1 6 0 SFBcastBegin 10 1.0 1.3157e-04 1.2 0.00e+00 0.0 6.0e+01 1.4e+03 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 10 1.0 1.2026e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 3 1.0 1.0222e-04 1.0 0.00e+00 0.0 1.5e+01 6.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 3 1.0 6.4691e-05 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 356 1.0 2.7824e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 356 1.0 9.2442e-04 1.2 1.24e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 34 KSPSetUp 1 1.0 2.2721e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.6691e+00 1.0 1.35e+08 1.0 1.4e+03 4.9e+03 8.0e+01 9 62 59 35 17 9 62 59 35 18 239 KSPGMRESOrthog 20 1.0 6.4603e-02 1.3 2.42e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 111 PCSetUp_GAMG+ 1 1.0 2.1502e+00 1.0 8.18e+07 1.1 9.0e+02 1.3e+04 3.1e+02 12 37 38 59 67 12 37 38 59 70 109 PCGAMGCreateG 2 1.0 2.0084e-01 1.0 1.52e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 2 GAMG Coarsen 4 1.0 1.2516e-01 1.0 0.00e+00 0.0 2.0e+02 7.8e+03 5.5e+01 1 0 8 8 12 1 0 8 8 12 0 GAMG MIS/Agg 2 1.0 1.2257e-01 1.0 0.00e+00 0.0 1.6e+02 8.4e+03 5.1e+01 1 0 7 7 11 1 0 7 7 11 0 PCGAMGProl 2 1.0 6.4806e-02 1.0 0.00e+00 0.0 2.6e+02 3.2e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 GAMG Prol-col 2 1.0 5.3297e-02 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 13 0 GAMG Prol-lift 2 1.0 1.1018e-02 1.0 0.00e+00 0.0 3.6e+01 6.8e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 PCGAMGOptProl 2 1.0 3.6723e-01 1.0 2.17e+07 1.0 1.9e+02 8.8e+03 6.6e+01 2 10 8 9 14 2 10 8 9 15 175 GAMG smooth 2 1.0 1.7558e-01 1.1 7.38e+06 1.0 7.2e+01 1.4e+04 2.4e+01 1 3 3 5 5 1 3 3 5 5 124 PCGAMGCreateL 2 1.0 1.4003e+00 1.0 5.99e+07 1.1 1.1e+02 6.5e+04 6.0e+01 8 27 5 36 13 8 27 5 36 13 121 GAMG PtAP 2 1.0 1.3262e+00 1.0 5.99e+07 1.1 8.8e+01 7.9e+04 2.6e+01 7 27 4 36 6 7 27 4 36 6 128 GAMG Reduce 1 1.0 6.2527e-01 1.0 2.00e+07 1.3 4.7e+01 5.0e+04 4.7e+01 3 9 2 12 10 3 9 2 12 11 87 PCGAMG Squ l00 1 1.0 1.1747e-01 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 PCGAMG Gal l00 1 1.0 7.7619e-01 1.0 4.07e+07 1.1 6.0e+01 7.7e+04 1.3e+01 4 18 3 24 3 4 18 3 24 3 149 PCGAMG Opt l00 1 1.0 8.0373e-02 1.1 5.06e+06 1.0 3.6e+01 2.2e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 187 PCGAMG Gal l01 1 1.0 5.5019e-01 1.0 2.00e+07 1.3 2.8e+01 8.3e+04 1.3e+01 3 9 1 12 3 3 9 1 12 3 99 PCGAMG Opt l01 1 1.0 7.5124e-02 1.1 1.91e+06 1.3 3.6e+01 6.7e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 69 PCSetUp 1 1.0 2.1502e+00 1.0 8.18e+07 1.1 9.0e+02 1.3e+04 3.1e+02 12 37 38 59 67 12 37 38 59 70 109 PCSetUpOnBlocks 20 1.0 2.1302e-02 58.5 5.42e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 255 PCApply 20 1.0 1.3294e+00 1.0 1.17e+08 1.0 1.3e+03 4.5e+03 2.0e+01 7 54 54 30 4 7 54 54 30 4 260 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 11 11 Matrix 82 82 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 60 60 IS L to G Mapping 5 5 Vector 181 181 Star Forest Graph 34 34 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 7.748e-07 Average time for MPI_Barrier(): 6.1604e-06 Average time for zero size MPI_Send(): 4.435e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== elasticity strong scaling (3 processes with ndofs=30000) ==== [2025-02-22 03:20:36.389] [RANK: 0] [info] Using partitioner with 69312 cell data [2025-02-22 03:20:36.390] [RANK: 0] [info] Compute partition of cells across ranks [2025-02-22 03:20:36.390] [RANK: 0] [info] Building mesh dual graph [2025-02-22 03:20:36.390] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:36.464] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-02-22 03:20:36.475] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:36.477] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:36.478] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-02-22 03:20:36.479] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) [2025-02-22 03:20:36.479] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-02-22 03:20:49.458] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:20:49.504] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:20:49.567] [RANK: 0] [info] Extract basic topology: 68440->68440 [2025-02-22 03:20:49.567] [RANK: 0] [info] Build local dual graph [2025-02-22 03:20:49.567] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:49.660] [RANK: 0] [info] GPS pseudo-diameter:(119) 16615-1177 [2025-02-22 03:20:49.673] [RANK: 0] [info] Create topology (single cell type) [2025-02-22 03:20:49.673] [RANK: 0] [info] Create topology (generalised) [2025-02-22 03:20:49.684] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:20:49.696] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:20:49.758] [RANK: 0] [info] Compute ghost indices [2025-02-22 03:20:49.758] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-02-22 03:20:49.764] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-02-22 03:20:49.798] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:20:49.800] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:20:49.910] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:49.924] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:49.936] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:49.952] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:49.986] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:20:49.989] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:20:49.989] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-02-22 03:20:50.009] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.032] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:50.032] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-02-22 03:20:50.101] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:20:50.101] [RANK: 0] [info] Cell type: 0 dofmap: 17110x4 [2025-02-22 03:20:50.110] [RANK: 0] [info] Global index computation [2025-02-22 03:20:50.111] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:20:50.111] [RANK: 0] [info] Get global indices [2025-02-22 03:20:50.160] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.176] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times [2025-02-22 03:20:50.209] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-02-22 03:20:50.235] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.268] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:50.447] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.461] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:50.478] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:20:50.478] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-02-22 03:20:50.479] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:20:50.479] [RANK: 0] [info] Cell type: 0 dofmap: 17110x4 [2025-02-22 03:20:50.482] [RANK: 0] [info] Global index computation [2025-02-22 03:20:50.483] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:20:50.483] [RANK: 0] [info] Get global indices [2025-02-22 03:20:50.531] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:50.544] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:50.617] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:20:50.617] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:20:50.617] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-02-22 03:20:50.814] [RANK: 0] [info] Column ghost size increased from 226 to 565 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- [2025-02-22 03:20:51.352] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 Square graph aggressive coarsening MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 Complexity: grid = 1.0928 operator = 1.37906 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int 222 1 175 0 2562 3 171 36 30000 3 42 22 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.09116 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=222, cols=222, bs=6 package used to perform factorization: petsc total: nonzeros=42228, allocated nonzeros=42228 using I-node routines: found 62 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=222, cols=222, bs=6 total: nonzeros=38700, allocated nonzeros=38700 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 73 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=222, cols=222, bs=6 total: nonzeros=38700, allocated nonzeros=38700 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 73 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.25788, max 2.83668 eigenvalues provided (min 0.0550126, max 2.5788) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=2562, cols=2562, bs=6 total: nonzeros=435708, allocated nonzeros=435708 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 266 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.257083, max 2.82791 eigenvalues provided (min 0.0723455, max 2.57083) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3345 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3345 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 13.830000 13.830000 Build dofmap data | 2 0.100000 0.200000 Build sparsity | 1 0.030000 0.030000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.270000 0.270000 Compute graph partition (SCOTCH) | 1 13.000000 13.000000 Compute local part of mesh dual graph (mixed) | 2 0.080000 0.160000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.080000 0.080000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.110000 0.110000 Distribute row-wise data (scalable) | 1 0.120000 0.120000 GPS: create_level_structure | 2 0.005000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 Init MPI | 1 0.560000 0.560000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 2.490000 2.490000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 13.000000 13.000000 SparsityPattern::finalize | 1 0.050000 0.050000 Topology: create | 1 0.310000 0.310000 Topology: determine shared index ownership | 1 0.080000 0.080000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble matrix | 1 0.430000 0.430000 ZZZ Assemble vector | 1 0.030000 0.030000 ZZZ Create Mesh | 1 13.830000 13.830000 ZZZ Create RHS function | 1 0.100000 0.100000 ZZZ Create boundary conditions | 1 0.090000 0.090000 ZZZ Create facets and facet->cell connectivity | 1 0.270000 0.270000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.020000 0.020000 ZZZ FunctionSpace | 1 0.100000 0.100000 ZZZ Solve | 1 2.500000 2.500000 *** Number of Krylov iterations: 19 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:20:53 2025 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 1.747e+01 1.000 1.746e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.270e+08 1.103 2.139e+08 6.418e+08 Flops/sec: 1.300e+07 1.104 1.225e+07 3.675e+07 MPI Msg Count: 8.040e+02 1.043 7.823e+02 2.347e+03 MPI Msg Len (bytes): 7.929e+06 1.455 8.193e+03 1.923e+07 MPI Reductions: 4.620e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.7464e+01 100.0% 6.4176e+08 100.0% 2.347e+03 100.0% 8.193e+03 100.0% 4.440e+02 96.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 109 1.0 2.8795e-01 1.9 0.00e+00 0.0 1.8e+02 4.0e+00 1.1e+02 1 0 7 0 24 1 0 7 0 25 0 BuildTwoSidedF 83 1.0 2.8801e-01 1.9 0.00e+00 0.0 9.8e+01 6.0e+04 8.3e+01 1 0 4 31 18 1 0 4 31 19 0 MatMult 199 1.0 7.7451e-01 1.0 1.24e+08 1.1 1.2e+03 5.8e+03 0.0e+00 4 54 51 36 0 4 54 51 36 0 449 MatMultAdd 40 1.0 6.5573e-02 1.1 9.96e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 442 MatMultTranspose 40 1.0 8.2111e-02 1.2 9.98e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 354 MatSolve 20 0.0 3.2926e-03 0.0 1.68e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 512 MatLUFactorSym 1 1.0 6.8091e-03 245.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 4.9271e-03 0.0 5.13e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1041 MatScale 6 1.0 1.7698e-03 1.0 6.02e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 990 MatResidual 40 1.0 1.5977e-01 1.1 2.42e+07 1.1 2.4e+02 5.5e+03 0.0e+00 1 11 10 7 0 1 11 10 7 0 422 MatAssemblyBegin 45 1.0 2.9273e-01 1.7 0.00e+00 0.0 9.8e+01 6.0e+04 2.3e+01 1 0 4 31 5 1 0 4 31 5 0 MatAssemblyEnd 45 1.0 1.3781e-01 1.2 9.68e+04 2.0 1.7e+02 5.2e+02 9.0e+01 1 0 7 0 19 1 0 7 0 20 2 MatGetRowIJ 1 0.0 4.8704e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 1 1.0 2.1605e-02 1.0 0.00e+00 0.0 4.0e+00 3.4e+02 1.5e+01 0 0 0 0 3 0 0 0 0 3 0 MatGetOrdering 1 0.0 1.7221e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 3.9010e-02 1.0 0.00e+00 0.0 1.2e+02 8.5e+02 3.7e+01 0 0 5 1 8 0 0 5 1 8 0 MatZeroEntries 2 1.0 5.4245e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 3.9925e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 4.6699e-02 1.1 1.18e+05 1.0 2.4e+01 4.1e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 7 MatTranspose 9 1.0 3.1360e-02 1.2 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 4 1 6 0 0 4 1 6 0 MatMatMultSym 6 1.0 1.3790e-01 1.3 0.00e+00 0.0 6.0e+01 1.1e+04 2.0e+01 1 0 3 3 4 1 0 3 3 5 0 MatMatMultNum 2 1.0 3.9731e-02 1.1 7.26e+06 1.1 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 510 MatPtAPSymbolic 2 1.0 4.0013e-01 1.0 0.00e+00 0.0 6.0e+01 6.0e+04 1.4e+01 2 0 3 19 3 2 0 3 19 3 0 MatPtAPNumeric 2 1.0 4.4330e-01 1.0 6.31e+07 1.2 2.8e+01 1.2e+05 1.2e+01 3 27 1 17 3 3 27 1 17 3 384 MatTrnMatMultSym 1 1.0 1.1754e-01 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 MatGetLocalMat 7 1.0 9.4871e-03 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 2.2713e-02 1.6 0.00e+00 0.0 8.4e+01 4.5e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 MatCreateGraph 2 1.0 1.2135e-01 1.0 1.56e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 4 VecMDot 20 1.0 3.9715e-02 1.2 1.20e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 5 90 VecTDot 40 1.0 4.6564e-02 1.5 8.03e+05 1.0 0.0e+00 0.0e+00 4.0e+01 0 0 0 0 9 0 0 0 0 9 52 VecNorm 42 1.0 7.2592e-02 1.6 6.40e+05 1.0 0.0e+00 0.0e+00 4.2e+01 0 0 0 0 9 0 0 0 0 9 26 VecScale 22 1.0 2.8881e-04 1.2 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1240 VecCopy 124 1.0 1.4433e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 141 1.0 6.8906e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 40 1.0 1.5792e-03 1.1 7.84e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1485 VecAYPX 258 1.0 8.7055e-03 1.6 2.11e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 723 VecAXPBYCZ 80 1.0 1.0687e-02 6.0 2.19e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 609 VecMAXPY 22 1.0 1.0494e-03 1.4 1.42e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4034 VecAssemblyBegin 61 1.0 3.6358e-02 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 14 0 VecAssemblyEnd 61 1.0 2.0717e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 182 1.0 1.2331e-02 2.9 9.96e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 240 VecScatterBegin 343 1.0 9.4239e-03 1.1 0.00e+00 0.0 1.8e+03 4.6e+03 0.0e+00 0 0 76 43 0 0 0 76 43 0 0 VecScatterEnd 343 1.0 5.2222e-01 1.4 1.32e+04 2.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0 VecNormalize 22 1.0 2.8435e-02 1.3 3.61e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 38 SFSetGraph 26 1.0 4.0982e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 26 1.0 1.9690e-03 1.2 0.00e+00 0.0 2.5e+02 4.9e+02 2.6e+01 0 0 11 1 6 0 0 11 1 6 0 SFBcastBegin 9 1.0 2.5333e-04 1.3 0.00e+00 0.0 5.4e+01 1.5e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 SFBcastEnd 9 1.0 2.0076e-02 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 3 1.0 1.6681e-04 1.2 0.00e+00 0.0 1.5e+01 6.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 3 1.0 7.1208e-05 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 355 1.0 3.1895e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 355 1.0 8.6489e-04 1.4 1.32e+04 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 38 KSPSetUp 1 1.0 1.2292e-02 50.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 9.5038e-01 1.0 1.39e+08 1.1 1.4e+03 4.9e+03 8.0e+01 5 62 59 35 17 5 62 59 35 18 421 KSPGMRESOrthog 20 1.0 4.0804e-02 1.2 2.41e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 5 176 PCSetUp_GAMG+ 1 1.0 1.5212e+00 1.0 8.62e+07 1.2 8.9e+02 1.3e+04 3.1e+02 9 37 38 58 67 9 37 38 58 70 155 PCGAMGCreateG 2 1.0 1.2137e-01 1.0 1.56e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 4 GAMG Coarsen 4 1.0 1.5956e-01 1.0 0.00e+00 0.0 1.9e+02 8.1e+03 5.4e+01 1 0 8 8 12 1 0 8 8 12 0 GAMG MIS/Agg 2 1.0 1.5680e-01 1.0 0.00e+00 0.0 1.6e+02 8.8e+03 5.0e+01 1 0 7 7 11 1 0 7 7 11 0 PCGAMGProl 2 1.0 8.7629e-02 1.0 0.00e+00 0.0 2.6e+02 3.2e+03 7.6e+01 1 0 11 4 16 1 0 11 4 17 0 GAMG Prol-col 2 1.0 5.3058e-02 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 13 0 GAMG Prol-lift 2 1.0 3.3963e-02 1.0 0.00e+00 0.0 3.6e+01 7.0e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 PCGAMGOptProl 2 1.0 2.8009e-01 1.0 2.29e+07 1.1 1.9e+02 8.8e+03 6.6e+01 2 10 8 9 14 2 10 8 9 15 231 GAMG smooth 2 1.0 1.2039e-01 1.1 7.82e+06 1.1 7.2e+01 1.4e+04 2.4e+01 1 3 3 5 5 1 3 3 5 5 182 PCGAMGCreateL 2 1.0 8.5847e-01 1.0 6.31e+07 1.2 1.1e+02 6.5e+04 6.0e+01 5 27 5 36 13 5 27 5 36 14 198 GAMG PtAP 2 1.0 8.3562e-01 1.0 6.31e+07 1.2 8.8e+01 7.8e+04 2.6e+01 5 27 4 36 6 5 27 4 36 6 204 GAMG Reduce 1 1.0 2.4430e-01 1.0 2.33e+07 1.7 4.7e+01 4.5e+04 4.7e+01 1 8 2 11 10 1 8 2 11 11 219 PCGAMG Squ l00 1 1.0 1.1755e-01 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 PCGAMG Gal l00 1 1.0 6.1442e-01 1.0 3.98e+07 1.0 6.0e+01 8.0e+04 1.3e+01 4 18 3 25 3 4 18 3 25 3 190 PCGAMG Opt l00 1 1.0 9.5784e-02 1.1 5.06e+06 1.0 3.6e+01 2.2e+04 1.1e+01 1 2 2 4 2 1 2 2 4 2 157 PCGAMG Gal l01 1 1.0 2.2138e-01 1.0 2.33e+07 1.7 2.8e+01 7.5e+04 1.3e+01 1 8 1 11 3 1 8 1 11 3 241 PCGAMG Opt l01 1 1.0 1.2248e-02 1.0 2.20e+06 1.5 3.6e+01 6.6e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 427 PCSetUp 1 1.0 1.5212e+00 1.0 8.62e+07 1.2 8.9e+02 1.3e+04 3.1e+02 9 37 38 58 67 9 37 38 58 70 155 PCSetUpOnBlocks 20 1.0 1.2334e-02 28.1 5.13e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 416 PCApply 20 1.0 8.2838e-01 1.0 1.21e+08 1.1 1.3e+03 4.5e+03 2.0e+01 5 54 55 30 4 5 54 55 30 5 418 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 11 11 Matrix 82 82 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 60 60 IS L to G Mapping 5 5 Vector 181 181 Star Forest Graph 34 34 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 7.468e-07 Average time for MPI_Barrier(): 1.8984e-06 Average time for zero size MPI_Send(): 3.10233e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== poisson weak scaling (3 processes with ndofs=10000) ==== [2025-02-22 03:20:55.200] [RANK: 0] [info] Using partitioner with 216000 cell data [2025-02-22 03:20:55.212] [RANK: 0] [info] Compute partition of cells across ranks [2025-02-22 03:20:55.212] [RANK: 0] [info] Building mesh dual graph [2025-02-22 03:20:55.212] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:20:55.418] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-02-22 03:20:55.436] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:20:55.464] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:20:55.464] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-02-22 03:20:55.478] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) [2025-02-22 03:20:55.478] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-02-22 03:21:12.498] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:21:12.520] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:21:12.591] [RANK: 0] [info] Extract basic topology: 212928->212928 [2025-02-22 03:21:12.592] [RANK: 0] [info] Build local dual graph [2025-02-22 03:21:12.592] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:21:12.711] [RANK: 0] [info] GPS pseudo-diameter:(169) 1857-51524 [2025-02-22 03:21:12.737] [RANK: 0] [info] Create topology (single cell type) [2025-02-22 03:21:12.737] [RANK: 0] [info] Create topology (generalised) [2025-02-22 03:21:12.870] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:21:12.876] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:21:12.897] [RANK: 0] [info] Compute ghost indices [2025-02-22 03:21:12.897] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-02-22 03:21:12.924] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-02-22 03:21:12.935] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:21:12.935] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:21:12.981] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:12.988] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:12.989] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:12.989] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.017] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:21:13.025] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:21:13.025] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-02-22 03:21:13.045] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.046] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.046] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-02-22 03:21:13.047] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:21:13.048] [RANK: 0] [info] Cell type: 0 dofmap: 53232x4 [2025-02-22 03:21:13.074] [RANK: 0] [info] Global index computation [2025-02-22 03:21:13.074] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:21:13.076] [RANK: 0] [info] Get global indices [2025-02-22 03:21:13.081] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.081] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times [2025-02-22 03:21:13.097] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-02-22 03:21:13.276] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.280] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.499] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.499] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.518] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:21:13.518] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-02-22 03:21:13.526] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:21:13.526] [RANK: 0] [info] Cell type: 0 dofmap: 53232x4 [2025-02-22 03:21:13.549] [RANK: 0] [info] Global index computation [2025-02-22 03:21:13.549] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:21:13.550] [RANK: 0] [info] Get global indices [2025-02-22 03:21:13.565] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:13.565] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:13.567] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:21:13.568] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:21:13.568] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-02-22 03:21:13.696] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:21:13.696] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) [2025-02-22 03:21:13.803] [RANK: 0] [info] Column ghost size increased from 475 to 1281 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- [2025-02-22 03:21:14.098] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 17.910000 17.910000 Build dofmap data | 2 0.045000 0.090000 Build sparsity | 1 0.060000 0.060000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.420000 0.420000 Compute graph partition (SCOTCH) | 1 16.990000 16.990000 Compute local part of mesh dual graph (mixed) | 2 0.210000 0.420000 Compute local-to-local map | 1 0.010000 0.010000 Compute non-local part of mesh dual graph | 1 0.070000 0.070000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.140000 0.140000 Distribute row-wise data (scalable) | 1 0.020000 0.020000 GPS: create_level_structure | 5 0.002000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.030000 0.030000 Init MPI | 1 0.490000 0.490000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.030000 0.060000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 1.110000 1.110000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.020000 0.020000 SCOTCH: call SCOTCH_dgraphPart | 1 16.970000 16.970000 SparsityPattern::finalize | 1 0.070000 0.070000 Topology: create | 1 0.250000 0.250000 Topology: determine shared index ownership | 1 0.140000 0.140000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.030000 0.030000 ZZZ Assemble | 1 0.520000 0.520000 ZZZ Assemble matrix | 1 0.250000 0.250000 ZZZ Assemble vector | 1 0.030000 0.030000 ZZZ Create Mesh | 1 17.910000 17.910000 ZZZ Create RHS function | 1 0.110000 0.110000 ZZZ Create boundary conditions | 1 0.020000 0.020000 ZZZ Create facets and facet->cell connectivity | 1 0.420000 0.420000 ZZZ FunctionSpace | 1 0.050000 0.050000 ZZZ Solve | 1 1.130000 1.130000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:21:15 2025 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 2.002e+01 1.000 2.002e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.529e+06 1.024 3.488e+06 1.046e+07 Flops/sec: 1.763e+05 1.024 1.742e+05 5.227e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.985e+05 1.249 5.990e+03 5.391e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.0021e+01 100.0% 1.0465e+07 100.0% 9.000e+01 100.0% 5.990e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 9.2423e-02 48.4 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 BuildTwoSidedF 2 1.0 9.2392e-02 49.8 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.5458e-02 2.1 1.93e+06 1.0 4.2e+01 5.7e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 371 MatConvert 1 1.0 2.0081e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 9.5744e-02 7.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 2.4597e-02 1.6 3.95e+03 1.3 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 0 MatGetRowIJ 4 1.0 8.7270e-05 9.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 8.9449e-04 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 1.1621e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 2.8984e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 9.0097e-03 10.2 3.21e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 106 VecNorm 8 1.0 1.7034e-02 1.9 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 28 VecCopy 2 1.0 1.8677e-04 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 2.9627e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 5.5690e-04 1.3 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1498 VecAYPX 6 1.0 3.7828e-04 1.7 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 945 VecScatterBegin 7 1.0 3.2093e-04 1.1 0.00e+00 0.0 4.2e+01 5.7e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 8.7135e-03 8.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 1.1168e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 3.4549e-04 1.2 0.00e+00 0.0 3.6e+01 8.3e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 8.6785e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 1.4986e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 1.8919e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 5.2255e-01 1.0 2.82e+06 1.0 4.2e+01 5.7e+03 2.4e+01 3 80 47 45 33 3 80 47 45 44 16 PCSetUp 1 1.0 5.9081e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 3 0 0 0 3 3 0 0 0 4 0 PCApply 8 1.0 4.9583e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 1 1 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 1.2023e-06 Average time for MPI_Barrier(): 5.6294e-06 Average time for zero size MPI_Send(): 7.25467e-05 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line ==== poisson strong scaling (3 processes with ndofs=30000) ==== [2025-02-22 03:21:16.615] [RANK: 0] [info] Using partitioner with 216000 cell data [2025-02-22 03:21:16.622] [RANK: 0] [info] Compute partition of cells across ranks [2025-02-22 03:21:16.622] [RANK: 0] [info] Building mesh dual graph [2025-02-22 03:21:16.622] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:21:16.791] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2025-02-22 03:21:16.819] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:16.819] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:16.819] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2025-02-22 03:21:16.834] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) [2025-02-22 03:21:16.834] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2025-02-22 03:21:34.937] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:21:34.960] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:21:35.035] [RANK: 0] [info] Extract basic topology: 212816->212816 [2025-02-22 03:21:35.036] [RANK: 0] [info] Build local dual graph [2025-02-22 03:21:35.036] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2025-02-22 03:21:35.238] [RANK: 0] [info] GPS pseudo-diameter:(168) 52481-731 [2025-02-22 03:21:35.272] [RANK: 0] [info] Create topology (single cell type) [2025-02-22 03:21:35.272] [RANK: 0] [info] Create topology (generalised) [2025-02-22 03:21:35.289] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2025-02-22 03:21:35.316] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2025-02-22 03:21:35.495] [RANK: 0] [info] Compute ghost indices [2025-02-22 03:21:35.495] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2025-02-22 03:21:35.508] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2025-02-22 03:21:35.610] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:21:35.620] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:21:35.873] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:35.896] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:35.944] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:35.972] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.058] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2025-02-22 03:21:36.072] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2025-02-22 03:21:36.072] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2025-02-22 03:21:36.087] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.087] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.087] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2025-02-22 03:21:36.089] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:21:36.089] [RANK: 0] [info] Cell type: 0 dofmap: 53204x4 [2025-02-22 03:21:36.103] [RANK: 0] [info] Global index computation [2025-02-22 03:21:36.104] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:21:36.113] [RANK: 0] [info] Get global indices [2025-02-22 03:21:36.116] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.117] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times [2025-02-22 03:21:36.122] [RANK: 0] [info] Computing mesh entities of dimension 2 [2025-02-22 03:21:36.233] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.233] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.365] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.365] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.371] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:21:36.371] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2025-02-22 03:21:36.377] [RANK: 0] [info] Checking required entities per dimension [2025-02-22 03:21:36.377] [RANK: 0] [info] Cell type: 0 dofmap: 53204x4 [2025-02-22 03:21:36.388] [RANK: 0] [info] Global index computation [2025-02-22 03:21:36.388] [RANK: 0] [info] Got 1 index_maps [2025-02-22 03:21:36.389] [RANK: 0] [info] Get global indices [2025-02-22 03:21:36.391] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2025-02-22 03:21:36.391] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2025-02-22 03:21:36.392] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:21:36.394] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2025-02-22 03:21:36.394] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2025-02-22 03:21:36.480] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2025-02-22 03:21:36.480] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) [2025-02-22 03:21:36.564] [RANK: 0] [info] Column ghost size increased from 456 to 1271 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- [2025-02-22 03:21:36.889] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 19.510000 19.510000 Build dofmap data | 2 0.025000 0.050000 Build sparsity | 1 0.030000 0.030000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.005000 0.010000 Compute entities of dim = 2 | 1 0.250000 0.250000 Compute graph partition (SCOTCH) | 1 18.090000 18.090000 Compute local part of mesh dual graph (mixed) | 2 0.180000 0.360000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.040000 0.040000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.110000 0.110000 Distribute row-wise data (scalable) | 1 0.030000 0.030000 GPS: create_level_structure | 5 0.004000 0.020000 Gibbs-Poole-Stockmeyer ordering | 1 0.040000 0.040000 Init MPI | 1 0.630000 0.630000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.015000 0.030000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 1.010000 1.010000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 18.080000 18.080000 SparsityPattern::finalize | 1 0.070000 0.070000 Topology: create | 1 0.890000 0.890000 Topology: determine shared index ownership | 1 0.290000 0.290000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.020000 0.020000 ZZZ Assemble | 1 0.490000 0.490000 ZZZ Assemble matrix | 1 0.240000 0.240000 ZZZ Assemble vector | 1 0.050000 0.050000 ZZZ Create Mesh | 1 19.510000 19.510000 ZZZ Create RHS function | 1 0.090000 0.090000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.260000 0.260000 ZZZ FunctionSpace | 1 0.020000 0.020000 ZZZ Solve | 1 1.020000 1.020000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:21:37 2025 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 2.130e+01 1.000 2.130e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.558e+06 1.031 3.489e+06 1.047e+07 Flops/sec: 1.671e+05 1.031 1.638e+05 4.914e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.919e+05 1.214 5.874e+03 5.287e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.1297e+01 100.0% 1.0466e+07 100.0% 9.000e+01 100.0% 5.874e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 1.1305e-01 990.5 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 BuildTwoSidedF 2 1.0 1.1314e-01 516.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.2415e-02 1.0 1.95e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 462 MatConvert 1 1.0 3.2827e-02 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 1.1630e-01 9.9 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 2.3899e-02 1.2 3.82e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 0 MatGetRowIJ 4 1.0 1.6938e-05 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 8.3066e-04 6.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 1.3892e-02 4.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 7.1247e-03 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 1.1149e-03 1.7 3.23e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 855 VecNorm 8 1.0 1.1306e-02 9.2 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 42 VecCopy 2 1.0 1.1951e-04 5.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 1.4994e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 8.6036e-03 29.0 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 97 VecAYPX 6 1.0 2.6117e-04 4.3 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1369 VecScatterBegin 7 1.0 3.7247e-04 1.2 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 6.3178e-03 2.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 1.2571e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 2.9344e-04 1.1 0.00e+00 0.0 3.6e+01 8.2e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 9.3811e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 1.8260e-04 129.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 1.4555e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 4.7322e-01 1.0 2.84e+06 1.0 4.2e+01 5.6e+03 2.4e+01 2 80 47 45 33 2 80 47 45 44 18 PCSetUp 1 1.0 5.4211e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 3 0 0 0 3 3 0 0 0 4 0 PCApply 8 1.0 4.4946e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 1 1 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 8.679e-07 Average time for MPI_Barrier(): 5.2024e-06 Average time for zero size MPI_Send(): 6.55467e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: strong source: command line make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.9.0-2_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.9.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.9.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.9.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2078850 and its subdirectories I: Current time: Sat Feb 22 03:22:08 -12 2025 I: pbuilder-time-stamp: 1740237728 Sat Feb 22 15:22:09 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sat Feb 22 15:22:09 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sat Feb 22 15:22:10 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Sat Feb 22 15:22:10 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ewcPuZ' ==================================================================================== Fri Mar 27 21:45:11 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "2 fenicsx-performance-tests trixie /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM 0.9.0-2" as arguments. Fri Mar 27 21:45:11 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-hgTRWdNs" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 21:45:11 UTC 2026 I: Downloading source for trixie/fenicsx-performance-tests=0.9.0-2 Reading package lists... NOTICE: 'fenicsx-performance-tests' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git Please use: git clone https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 29.8 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (dsc) [2467 B] Get:2 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (tar) [21.0 kB] Get:3 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (diff) [6360 B] Fetched 29.8 kB in 0s (617 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'fenicsx-performance-tests' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git Please use: git clone https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 29.8 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (dsc) [2467 B] Get:2 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (tar) [21.0 kB] Get:3 http://deb.debian.org/debian trixie/main fenicsx-performance-tests 0.9.0-2 (diff) [6360 B] Fetched 29.8 kB in 0s (617 kB/s) Download complete and in download only mode ============================================================================= Re-Building fenicsx-performance-tests in trixie on amd64 on ionos5-amd64 now. Date: Fri Mar 27 21:45:12 UTC 2026 Date UTC: Fri Mar 27 21:45:12 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/pbuilderrc_nRM3 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' fenicsx-performance-tests = debian-installer -o fenicsx-performance-tests = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' fenicsx-performance-tests = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/pbuilderrc_nRM3 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b2 --logfile b2/build.log fenicsx-performance-tests_0.9.0-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Mar 28 11:45:12 +14 2026 I: pbuilder-time-stamp: 1774647912 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.9.0-2.dsc] I: copying [./fenicsx-performance-tests_0.9.0.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.9.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.9.0-2.dsc: unsupported subcommand dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.9.0 dpkg-source: info: unpacking fenicsx-performance-tests_0.9.0.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.9.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 27 21:45 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=d67deb64125d4b789a20936d5b7a984e LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2588651 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/pbuilderrc_nRM3 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b2 --logfile b2/build.log fenicsx-performance-tests_0.9.0-2.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.9~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 1:0.9~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-real-dev; however: Package libdolfinx-real-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2.10{a} libadios2-mpi-auxiliary-dev{a} libadios2-mpi-c++11-2.10{a} libadios2-mpi-c++11-dev{a} libadios2-mpi-c-2.10{a} libadios2-mpi-core-2.10{a} libadios2-mpi-core-dev{a} libadios2-mpi-plugins{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libbasix-dev{a} libbasix0.9{a} libblas-dev{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.9{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfmt-dev{a} libfmt10{a} libgfortran-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-mpi-dev{a} libhdf5-openmpi-310{a} libhdf5-openmpi-cpp-310{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-310{a} libhdf5-openmpi-hl-310{a} libhdf5-openmpi-hl-cpp-310{a} libhdf5-openmpi-hl-fortran-310{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.32.0{a} libhypre-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-dev{a} libldap2{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmumps-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpciaccess0{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libsodium23{a} libspdlog-dev{a} libspdlog1.15{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libz3-4{a} libzmq5{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-ffcx{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix wget xauth zsh 0 packages upgraded, 350 newly installed, 0 to remove and 0 not upgraded. Need to get 289 MB of archives. After unpacking 1355 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 34 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:9.9p2-1 [970 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 65 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 72 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-16 [879 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-16 [11.7 MB] Get: 82 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-16 [13.6 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 84 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 85 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 55.0-1 [62.2 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 55.0-1 [351 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-6 [210 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libadios2-common-c++11-dev all 2.10.2+dfsg1-1 [25.7 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libadios2-common-core-dev amd64 2.10.2+dfsg1-1+b2 [124 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 55.0-1 [70.2 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.6-3 [651 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-21 [23.6 MB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get: 121 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 55.0-1 [28.5 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 55.0-1 [43.3 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libopenmpi40 amd64 5.0.6-4 [2356 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 132 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-310 amd64 1.14.5+repack-3 [1395 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.46-4 [284 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libpugixml1v5 amd64 1.14-2 [88.6 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b2 [133 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b2 [221 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-plugins amd64 2.10.2+dfsg1-1+b2 [15.4 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-2.10 amd64 2.10.2+dfsg1-1+b2 [1738 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c-2.10 amd64 2.10.2+dfsg1-1+b2 [70.8 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-2.10 amd64 2.10.2+dfsg1-1+b2 [416 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-dev amd64 2.10.2+dfsg1-1+b2 [23.5 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-2.10 amd64 2.10.2+dfsg1-1+b2 [207 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-dev amd64 2.10.2+dfsg1-1+b2 [80.2 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-dev amd64 2.10.2+dfsg1-1+b2 [11.5 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-3 [23.9 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.8.3+dfsg-3 [40.8 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libarpack2t64 amd64 3.9.1-4 [104 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.1-2 [170 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.1-2 [4998 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libarpack2-dev amd64 3.9.1-4 [120 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libbasix0.9 amd64 0.9.0-2+b1 [410 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libbasix-dev amd64 0.9.0-2+b1 [67.1 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.1 [10.6 MB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4.1 [234 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4.1 [235 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-4.1 [240 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83-dev amd64 1.83.0-4.1 [246 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 169 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83.0 amd64 1.83.0-4.1 [230 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83.0 amd64 1.83.0-4.1 [333 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83-dev amd64 1.83.0-4.1 [373 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83-dev amd64 1.83.0-4.1 [239 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 174 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4.1 [282 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83.0 amd64 1.83.0-4.1 [230 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83-dev amd64 1.83.0-4.1 [232 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4.1 [298 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 179 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.1 [330 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-6 [10.4 MB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.1 [346 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.1 [261 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 184 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83.0 amd64 1.83.0-4.1 [523 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83-dev amd64 1.83.0-4.1 [571 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 187 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83.0 amd64 1.83.0-4.1 [271 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 5.0.6-4 [97.1 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libibverbs-dev amd64 55.0-1 [648 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-3 [415 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libltdl-dev amd64 2.5.4-3 [167 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libpmix-dev amd64 5.0.6-3 [3961 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 5.0.6-4 [189 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 libopenmpi-dev amd64 5.0.6-4 [1088 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 mpi-default-dev amd64 1.18 [3372 B] Get: 207 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83-dev amd64 1.83.0-4.1 [290 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 209 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.1 [347 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4.1 [375 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 212 http://deb.debian.org/debian trixie/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 213 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.1 [269 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83-dev amd64 1.83.0-4.1 [276 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 216 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83.0 amd64 1.83.0-4.1 [235 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83-dev amd64 1.83.0-4.1 [236 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 219 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 libbtf2 amd64 1:7.8.3+dfsg-3 [24.8 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 libc6-dbg amd64 2.40-7 [7165 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 libcamd3 amd64 1:7.8.3+dfsg-3 [37.6 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 libccolamd3 amd64 1:7.8.3+dfsg-3 [39.3 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-3 [32.6 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 libcholmod5 amd64 1:7.8.3+dfsg-3 [639 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b2 [265 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB] Get: 230 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.6.0-2 [88.5 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 235 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.12.1-2 [483 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libcxsparse4 amd64 1:7.8.3+dfsg-3 [84.1 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 252 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libptscotch-7.0 amd64 7.0.6-1 [660 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5+b1 [611 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 libhypre-2.32.0 amd64 2.32.0-4 [1717 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 libklu2 amd64 1:7.8.3+dfsg-3 [90.7 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get: 259 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi2.2 amd64 2.2.2-1 [1594 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libspqr4 amd64 1:7.8.3+dfsg-3 [146 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [174 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libumfpack6 amd64 1:7.8.3+dfsg-3 [280 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.22 amd64 3.22.2+dfsg1-1+b1 [7850 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 libparpack2t64 amd64 3.9.1-4 [99.8 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.22 amd64 3.22.2+dfsg1-1 [1386 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 libspdlog1.15 amd64 1:1.15.1+ds-1 [108 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 libdolfinx-real0.9 amd64 1:0.9.0-6+b2 [577 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 libldl3 amd64 1:7.8.3+dfsg-3 [24.6 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-3 [47.3 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 librbio4 amd64 1:7.8.3+dfsg-3 [40.0 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 libspex3 amd64 1:7.8.3+dfsg-3 [60.1 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 libparu1 amd64 1:7.8.3+dfsg-3 [65.2 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-3 [1476 kB] Get: 277 http://deb.debian.org/debian trixie/main amd64 libscotch-7.0 amd64 7.0.6-1 [413 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 libscotch-dev amd64 7.0.6-1 [1584 kB] Get: 279 http://deb.debian.org/debian trixie/main amd64 libptscotch-dev amd64 7.0.6-1 [1394 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi-dev amd64 2.2.2-1 [11.1 kB] Get: 281 http://deb.debian.org/debian trixie/main amd64 libscalapack-mpi-dev amd64 2.2.2-1 [6264 B] Get: 282 http://deb.debian.org/debian trixie/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB] Get: 286 http://deb.debian.org/debian trixie/main amd64 opencl-c-headers all 3.0~2024.10.24-2 [46.8 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 opencl-clhpp-headers all 3.0~2024.10.24-2 [50.7 kB] Get: 288 http://deb.debian.org/debian trixie/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b2 [8672 B] Get: 289 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-fortran-310 amd64 1.14.5+repack-3 [113 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get: 293 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get: 294 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 295 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 296 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 297 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-dev amd64 1.14.5+repack-3 [3267 kB] Get: 298 http://deb.debian.org/debian trixie/main amd64 libhdf5-mpi-dev amd64 1.14.5+repack-3 [18.7 kB] Get: 299 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [21.9 kB] Get: 300 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5+b1 [904 kB] Get: 301 http://deb.debian.org/debian trixie/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 302 http://deb.debian.org/debian trixie/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 303 http://deb.debian.org/debian trixie/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 304 http://deb.debian.org/debian trixie/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 305 http://deb.debian.org/debian trixie/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 306 http://deb.debian.org/debian trixie/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 307 http://deb.debian.org/debian trixie/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get: 308 http://deb.debian.org/debian trixie/main amd64 libyaml-dev amd64 0.2.5-2 [63.4 kB] Get: 309 http://deb.debian.org/debian trixie/main amd64 libpetsc3.22-dev-common all 3.22.2+dfsg1-1 [311 kB] Get: 310 http://deb.debian.org/debian trixie/main amd64 libhypre-dev amd64 2.32.0-4 [1988 kB] Get: 311 http://deb.debian.org/debian trixie/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 312 http://deb.debian.org/debian trixie/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB] Get: 313 http://deb.debian.org/debian trixie/main amd64 valgrind amd64 1:3.24.0-2 [15.0 MB] Get: 314 http://deb.debian.org/debian trixie/main amd64 valgrind-mpi amd64 1:3.24.0-2 [55.5 kB] Get: 315 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [7948 kB] Get: 316 http://deb.debian.org/debian trixie/main amd64 libparpack2-dev amd64 3.9.1-4 [112 kB] Get: 317 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.22-dev amd64 3.22.2+dfsg1-1 [6394 kB] Get: 318 http://deb.debian.org/debian trixie/main amd64 libdolfinx-real-dev amd64 1:0.9.0-6+b2 [49.0 kB] Get: 319 http://deb.debian.org/debian trixie/main amd64 libpugixml-dev amd64 1.14-2 [109 kB] Get: 320 http://deb.debian.org/debian trixie/main amd64 libfmt-dev amd64 10.1.1+ds1-4 [177 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 libspdlog-dev amd64 1:1.15.1+ds-1 [90.8 kB] Get: 322 http://deb.debian.org/debian trixie/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [795 kB] Get: 323 http://deb.debian.org/debian trixie/main amd64 python3-cffi-backend amd64 1.17.1-2+b1 [96.2 kB] Get: 324 http://deb.debian.org/debian trixie/main amd64 python3-ply all 3.11-7 [62.6 kB] Get: 325 http://deb.debian.org/debian trixie/main amd64 python3-pycparser all 2.22-2 [78.0 kB] Get: 326 http://deb.debian.org/debian trixie/main amd64 python3-cffi all 1.17.1-2 [89.4 kB] Get: 327 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.2-1 [2151 kB] Get: 328 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get: 329 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.2-1 [5005 kB] Get: 330 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB] Get: 331 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB] Get: 332 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 333 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 334 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB] Get: 335 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB] Get: 336 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 337 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 338 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 339 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 340 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 341 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 342 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 343 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 344 http://deb.debian.org/debian trixie/main amd64 python3-ufl all 2024.2.0-2 [150 kB] Get: 345 http://deb.debian.org/debian trixie/main amd64 python3-basix amd64 0.9.0-2+b1 [134 kB] Get: 346 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 347 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 348 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 350 http://deb.debian.org/debian trixie/main amd64 libdolfinx-dev amd64 1:0.9.0-6+b2 [202 kB] Fetched 289 MB in 20s (14.1 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up opencl-c-headers (3.0~2024.10.24-2) ... Setting up libfftw3-double3:amd64 (3.3.10-2+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-16) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-4.1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libnghttp3-dev:amd64 (1.6.0-2) ... Setting up libmumps-headers-dev (5.7.3-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libnl-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.6-4) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-3) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up cmake-data (3.31.5-2) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-4.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libboost-math1.83.0:amd64 (1.83.0-4.1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up valgrind (1:3.24.0-2) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdrm-common (2.4.123-1) ... Setting up valgrind-mpi (1:3.24.0-2) ... Setting up readline-common (8.2-6) ... Setting up libicu-dev:amd64 (72.1-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libfmt10:amd64 (10.1.1+ds1-4) ... Setting up libblas-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-16) ... Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libarpack2t64:amd64 (3.9.1-4) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up libamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-4.1) ... Setting up nettle-dev:amd64 (3.10-1+b1) ... Setting up libyaml-dev:amd64 (0.2.5-2) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-4.1) ... Setting up libtool (2.5.4-3) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libspex3:amd64 (1:7.8.3+dfsg-3) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-3) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libpugixml-dev:amd64 (1.14-2) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-3) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-4.1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-4.1) ... Setting up libcamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-16) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1+b1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.5.4-3) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-4.1) ... Setting up libllvm17t64:amd64 (1:17.0.6-21) ... Setting up librbio4:amd64 (1:7.8.3+dfsg-3) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-4.1) ... Setting up libldap-dev:amd64 (2.6.9+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up opencl-clhpp-headers (3.0~2024.10.24-2) ... Setting up liblapack-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libfmt-dev:amd64 (10.1.1+ds1-4) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.1) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libspdlog1.15:amd64 (1:1.15.1+ds-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b2) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.8.3+dfsg-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libbasix0.9:amd64 (0.9.0-2+b1) ... Setting up groff-base (1.23.0-7) ... Setting up libhwloc-dev:amd64 (2.11.2-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up gfortran-14 (14.2.0-16) ... Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... Setting up libbasix-dev:amd64 (0.9.0-2+b1) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libpython3.13:amd64 (3.13.2-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-4.1) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libibverbs1:amd64 (55.0-1) ... Setting up libcholmod5:amd64 (1:7.8.3+dfsg-3) ... Setting up libarpack2-dev:amd64 (3.9.1-4) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libzmq5:amd64 (4.3.5-1+b3) ... Setting up ibverbs-providers:amd64 (55.0-1) ... Setting up libspqr4:amd64 (1:7.8.3+dfsg-3) ... Setting up python3.13 (3.13.2-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.1) ... Setting up openssh-client (1:9.9p2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.10-2) ... Setting up python3 (3.13.1-2) ... /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up libspdlog-dev:amd64 (1:1.15.1+ds-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.3+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libklu2:amd64 (1:7.8.3+dfsg-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-4) ... Setting up libpython3.13-dev:amd64 (3.13.2-1) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libpmix2t64:amd64 (5.0.6-3) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up libumfpack6:amd64 (1:7.8.3+dfsg-3) ... Setting up librdmacm1t64:amd64 (55.0-1) ... Setting up libpmix-dev:amd64 (5.0.6-3) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-4) ... Setting up libgnutls28-dev:amd64 (3.8.9-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up libpython3-dev:amd64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up libkdb5-10t64:amd64 (1.21.3-4) ... Setting up python3.13-dev (3.13.2-1) ... Setting up python3-ply (3.11-7) ... Setting up python3-typeguard (4.4.1-1) ... Setting up debhelper (13.24.1) ... Setting up libibverbs-dev:amd64 (55.0-1) ... Setting up libparu1:amd64 (1:7.8.3+dfsg-3) ... Setting up python3-pycparser (2.22-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.1-2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ... Setting up cmake (3.31.5-2) ... Setting up krb5-multidev:amd64 (1.21.3-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-ufl (2024.2.0-2) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-3) ... Setting up python3-cffi (1.17.1-2) ... Setting up libkrb5-dev:amd64 (1.21.3-4) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libcurl4-openssl-dev:amd64 (8.12.1-2) ... Setting up python3-basix (0.9.0-2+b1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up python3-ffcx (1:0.9.0-2) ... Setting up libopenmpi40:amd64 (5.0.6-4) ... Setting up libptscotch-7.0:amd64 (7.0.6-1) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b2) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ... Setting up libhdf5-openmpi-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libparpack2t64:amd64 (3.9.1-4) ... Setting up libboost-mpi1.83.0 (1.83.0-4.1) ... Setting up openmpi-bin (5.0.6-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-hl-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-hl-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-openmpi-hl-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libhdf5-openmpi-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ... Setting up mpi-default-bin (1.18) ... Setting up libhypre-2.32.0:amd64 (2.32.0-4) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5+b1) ... Setting up libopenmpi-dev:amd64 (5.0.6-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.14.5+repack-3) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libscalapack-openmpi2.2:amd64 (2.2.2-1) ... Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.2-1) ... Setting up mpi-default-dev (1.18) ... Setting up libscalapack-mpi-dev:amd64 (2.2.2-1) ... Setting up libmumps-dev:amd64 (5.7.3-3+b1) ... Setting up libscotch-dev (7.0.6-1) ... Setting up libparpack2-dev:amd64 (3.9.1-4) ... Setting up libpetsc-real3.22:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up libhypre-dev:amd64 (2.32.0-4) ... Setting up libptscotch-dev (7.0.6-1) ... Setting up libboost-mpi1.83-dev (1.83.0-4.1) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libhdf5-mpi-dev:amd64 (1.14.5+repack-3) ... Setting up libpetsc3.22-dev-common (3.22.2+dfsg1-1) ... Setting up libslepc-real3.22 (3.22.2+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up libpetsc-real3.22-dev:amd64 (3.22.2+dfsg1-1+b1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode Setting up libslepc-real3.22-dev (3.22.2+dfsg1-1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up libadios2-mpi-plugins:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-core-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-c++11-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-c-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-auxiliary-2.10:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libdolfinx-real0.9:amd64 (1:0.9.0-6+b2) ... Setting up libdolfinx-real-dev:amd64 (1:0.9.0-6+b2) ... Setting up libadios2-mpi-auxiliary-dev:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-core-dev:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libadios2-mpi-c++11-dev:amd64 (2.10.2+dfsg1-1+b2) ... Setting up libdolfinx-dev:amd64 (1:0.9.0-6+b2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.9.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Checking for Basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.2", minimum required is "2.8.1") found components: CXX CMake Warning (dev) at CMakeLists.txt:52 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_program_options-1.83.0 -- [x] libboost_program_options.so.1.83.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -- Configuring done (2.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [ 9%] Generating Poisson.c [ 18%] Generating Elasticity.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Poisson.py ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Elasticity.py cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o [ 81%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o [ 81%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mesh.cpp /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/main.cpp /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o 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-ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp [ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu 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"CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o" -o dolfinx-scaling-test /usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 -lpthread /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.9.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libspdlog.so.1.15.1 /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.10.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.10.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== [2026-03-28 11:49:13.965] [RANK: 0] [info] Using partitioner with 69312 cell data [2026-03-28 11:49:13.966] [RANK: 0] [info] Compute partition of cells across ranks [2026-03-28 11:49:13.966] [RANK: 0] [info] Building mesh dual graph [2026-03-28 11:49:13.966] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2026-03-28 11:49:13.979] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2026-03-28 11:49:13.980] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:13.980] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:13.980] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2026-03-28 11:49:13.981] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) [2026-03-28 11:49:13.981] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2026-03-28 11:49:21.652] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2026-03-28 11:49:21.665] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2026-03-28 11:49:21.667] [RANK: 0] [info] Extract basic topology: 69312->69312 [2026-03-28 11:49:21.667] [RANK: 0] [info] Build local dual graph [2026-03-28 11:49:21.667] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2026-03-28 11:49:21.687] [RANK: 0] [info] GPS pseudo-diameter:(119) 16877-1290 [2026-03-28 11:49:21.689] [RANK: 0] [info] Create topology (single cell type) [2026-03-28 11:49:21.689] [RANK: 0] [info] Create topology (generalised) [2026-03-28 11:49:21.691] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2026-03-28 11:49:21.692] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2026-03-28 11:49:21.697] [RANK: 0] [info] Compute ghost indices [2026-03-28 11:49:21.697] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2026-03-28 11:49:21.697] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2026-03-28 11:49:21.698] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2026-03-28 11:49:21.698] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2026-03-28 11:49:21.704] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:21.704] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:21.704] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:21.704] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:21.706] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2026-03-28 11:49:21.706] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2026-03-28 11:49:21.706] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2026-03-28 11:49:21.706] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:21.706] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:21.706] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2026-03-28 11:49:21.707] [RANK: 0] [info] Checking required entities per dimension [2026-03-28 11:49:21.707] [RANK: 0] [info] Cell type: 0 dofmap: 17328x4 [2026-03-28 11:49:21.710] [RANK: 0] [info] Global index computation [2026-03-28 11:49:21.710] [RANK: 0] [info] Got 1 index_maps [2026-03-28 11:49:21.710] [RANK: 0] [info] Get global indices [2026-03-28 11:49:21.710] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:21.710] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times [2026-03-28 11:49:21.712] [RANK: 0] [info] Computing mesh entities of dimension 2 [2026-03-28 11:49:21.734] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:21.734] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:21.785] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:21.785] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:21.786] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2026-03-28 11:49:21.786] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2026-03-28 11:49:21.787] [RANK: 0] [info] Checking required entities per dimension [2026-03-28 11:49:21.787] [RANK: 0] [info] Cell type: 0 dofmap: 17328x4 [2026-03-28 11:49:21.788] [RANK: 0] [info] Global index computation [2026-03-28 11:49:21.788] [RANK: 0] [info] Got 1 index_maps [2026-03-28 11:49:21.789] [RANK: 0] [info] Get global indices [2026-03-28 11:49:21.789] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:21.789] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:21.789] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2026-03-28 11:49:21.789] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2026-03-28 11:49:21.789] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2026-03-28 11:49:21.802] [RANK: 0] [info] Column ghost size increased from 219 to 551 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- [2026-03-28 11:49:21.893] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 Square graph aggressive coarsening MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 Complexity: grid = 1.0958 operator = 1.39537 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int 228 1 191 0 2646 3 171 37 30000 3 42 22 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.09302 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 package used to perform factorization: petsc total: nonzeros=47376, allocated nonzeros=47376 using I-node routines: found 59 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 total: nonzeros=43344, allocated nonzeros=43344 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 71 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=228, cols=228, bs=6 total: nonzeros=43344, allocated nonzeros=43344 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 71 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.260654, max 2.86719 eigenvalues provided (min 0.0421999, max 2.60654) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=2646, cols=2646, bs=6 total: nonzeros=451476, allocated nonzeros=451476 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 280 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.258305, max 2.84136 eigenvalues provided (min 0.0700383, max 2.58305) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3383 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3383 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 7.750000 7.750000 Build dofmap data | 2 0.000000 0.000000 Build sparsity | 1 0.000000 0.000000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.070000 0.070000 Compute graph partition (SCOTCH) | 1 7.680000 7.680000 Compute local part of mesh dual graph (mixed) | 2 0.015000 0.030000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.000000 0.000000 Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 2 0.000000 0.000000 Gibbs-Poole-Stockmeyer ordering | 1 0.000000 0.000000 Init MPI | 1 0.020000 0.020000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.460000 0.460000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 7.680000 7.680000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.020000 0.020000 Topology: determine shared index ownership | 1 0.010000 0.010000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble matrix | 1 0.070000 0.070000 ZZZ Assemble vector | 1 0.000000 0.000000 ZZZ Create Mesh | 1 7.750000 7.750000 ZZZ Create RHS function | 1 0.010000 0.010000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.070000 0.070000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.010000 0.010000 ZZZ FunctionSpace | 1 0.000000 0.000000 ZZZ Solve | 1 0.460000 0.460000 *** Number of Krylov iterations: 18 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Sat Mar 28 11:49:22 2026 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 8.391e+00 1.000 8.391e+00 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.214e+08 1.104 2.113e+08 6.338e+08 Flops/sec: 2.638e+07 1.104 2.518e+07 7.553e+07 MPI Msg Count: 7.820e+02 1.043 7.610e+02 2.283e+03 MPI Msg Len (bytes): 7.514e+06 1.371 8.107e+03 1.851e+07 MPI Reductions: 4.590e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 8.3912e+00 100.0% 6.3381e+08 100.0% 2.283e+03 100.0% 8.107e+03 100.0% 4.410e+02 96.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 109 1.0 4.0598e-02 26.0 0.00e+00 0.0 1.8e+02 4.0e+00 1.1e+02 0 0 8 0 24 0 0 8 0 25 0 BuildTwoSidedF 83 1.0 4.0312e-02 20.0 0.00e+00 0.0 9.8e+01 5.9e+04 8.3e+01 0 0 4 31 18 0 0 4 31 19 0 MatMult 190 1.0 5.0981e-02 1.0 1.17e+08 1.1 1.1e+03 5.6e+03 0.0e+00 1 53 50 34 0 1 53 50 34 0 6564 MatMultAdd 38 1.0 5.0027e-03 1.1 9.54e+06 1.0 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 5584 MatMultTranspose 38 1.0 7.6601e-03 1.1 9.55e+06 1.1 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 3650 MatSolve 19 0.0 9.6698e-04 0.0 1.80e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1857 MatLUFactorSym 1 1.0 1.7997e-03 164.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 2.6822e-03 1174.9 6.28e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2341 MatScale 6 1.0 5.9995e-04 1.1 6.05e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 2956 MatResidual 38 1.0 9.6214e-03 1.0 2.28e+07 1.1 2.3e+02 5.3e+03 0.0e+00 0 10 10 7 0 0 10 10 7 0 6726 MatAssemblyBegin 45 1.0 5.3742e-02 3.0 0.00e+00 0.0 9.8e+01 5.9e+04 2.3e+01 0 0 4 31 5 0 0 4 31 5 0 MatAssemblyEnd 45 1.0 2.8866e-02 1.0 9.28e+04 2.1 1.7e+02 5.0e+02 9.0e+01 0 0 8 0 20 0 0 8 0 20 8 MatGetRowIJ 1 0.0 2.9138e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 1 1.0 2.4348e-03 1.0 0.00e+00 0.0 4.0e+00 3.7e+02 1.5e+01 0 0 0 0 3 0 0 0 0 3 0 MatGetOrdering 1 0.0 9.9328e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.0081e-03 1.0 0.00e+00 0.0 1.2e+02 7.9e+02 3.8e+01 0 0 5 1 8 0 0 5 1 9 0 MatZeroEntries 2 1.0 1.5084e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 9.3948e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 5.4703e-03 1.0 1.17e+05 1.0 2.4e+01 3.9e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 64 MatTranspose 9 1.0 7.9336e-03 1.3 0.00e+00 0.0 1.0e+02 1.8e+03 2.7e+01 0 0 5 1 6 0 0 5 1 6 0 MatMatMultSym 6 1.0 3.6432e-02 1.1 0.00e+00 0.0 6.0e+01 1.0e+04 2.0e+01 0 0 3 3 4 0 0 3 3 5 0 MatMatMultNum 2 1.0 7.9256e-03 1.0 7.20e+06 1.1 1.2e+01 3.2e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 2578 MatPtAPSymbolic 2 1.0 1.5845e-01 1.0 0.00e+00 0.0 6.0e+01 6.1e+04 1.4e+01 2 0 3 20 3 2 0 3 20 3 0 MatPtAPNumeric 2 1.0 1.4496e-01 1.0 6.54e+07 1.2 2.8e+01 1.2e+05 1.2e+01 2 28 1 18 3 2 28 1 18 3 1222 MatTrnMatMultSym 1 1.0 2.1895e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 MatGetLocalMat 7 1.0 2.1005e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 2.6801e-03 1.1 0.00e+00 0.0 8.4e+01 4.5e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 MatCreateGraph 2 1.0 1.3213e-02 1.0 1.54e+05 1.0 1.4e+02 1.6e+03 5.0e+01 0 0 6 1 11 0 0 6 1 11 34 VecMDot 20 1.0 1.0380e-03 1.5 1.21e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 5 3459 VecTDot 38 1.0 8.5505e-04 1.6 7.71e+05 1.0 0.0e+00 0.0e+00 3.8e+01 0 0 0 0 8 0 0 0 0 9 2666 VecNorm 41 1.0 1.3412e-03 2.7 6.27e+05 1.0 0.0e+00 0.0e+00 4.1e+01 0 0 0 0 9 0 0 0 0 9 1385 VecScale 22 1.0 5.8788e-05 1.3 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 6108 VecCopy 118 1.0 3.4728e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 134 1.0 1.7192e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 38 1.0 3.2492e-04 1.4 7.53e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 6849 VecAYPX 245 1.0 1.1830e-03 1.1 2.02e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5057 VecAXPBYCZ 76 1.0 5.0460e-04 1.1 2.09e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12292 VecMAXPY 22 1.0 3.2737e-04 1.1 1.43e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12964 VecAssemblyBegin 61 1.0 6.7067e-04 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 14 0 VecAssemblyEnd 61 1.0 3.4561e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 174 1.0 1.0108e-03 1.1 9.56e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2810 VecScatterBegin 330 1.0 1.4120e-03 1.2 0.00e+00 0.0 1.7e+03 4.4e+03 0.0e+00 0 0 75 41 0 0 0 75 41 0 0 VecScatterEnd 330 1.0 1.0561e-02 2.9 1.30e+04 2.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3 VecNormalize 22 1.0 7.3756e-04 2.6 3.63e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 1461 SFSetGraph 26 1.0 1.2031e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 26 1.0 8.0768e-04 1.2 0.00e+00 0.0 2.5e+02 4.8e+02 2.6e+01 0 0 11 1 6 0 0 11 1 6 0 SFBcastBegin 10 1.0 3.5487e-05 1.1 0.00e+00 0.0 6.0e+01 1.3e+03 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 10 1.0 7.9676e-05 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 3 1.0 5.9186e-05 1.1 0.00e+00 0.0 1.5e+01 6.3e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 3 1.0 2.5362e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 343 1.0 5.7653e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 343 1.0 1.0849e-04 1.4 1.30e+04 2.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 281 KSPSetUp 1 1.0 8.1575e-05 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 6.9056e-02 1.0 1.32e+08 1.1 1.3e+03 4.7e+03 7.6e+01 1 61 58 34 17 1 61 58 34 17 5577 KSPGMRESOrthog 20 1.0 1.3118e-03 1.3 2.42e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 5 5475 PCSetUp_GAMG+ 1 1.0 3.8857e-01 1.0 8.83e+07 1.2 9.0e+02 1.2e+04 3.1e+02 5 38 39 60 68 5 38 39 60 70 625 PCGAMGCreateG 2 1.0 1.3220e-02 1.0 1.54e+05 1.0 1.4e+02 1.6e+03 5.0e+01 0 0 6 1 11 0 0 6 1 11 34 GAMG Coarsen 4 1.0 2.4344e-02 1.0 0.00e+00 0.0 2.0e+02 7.5e+03 5.5e+01 0 0 9 8 12 0 0 9 8 12 0 GAMG MIS/Agg 2 1.0 2.3004e-02 1.0 0.00e+00 0.0 1.6e+02 8.1e+03 5.1e+01 0 0 7 7 11 0 0 7 7 12 0 PCGAMGProl 2 1.0 8.5169e-03 1.0 0.00e+00 0.0 2.6e+02 3.0e+03 7.6e+01 0 0 11 4 17 0 0 11 4 17 0 GAMG Prol-col 2 1.0 3.1333e-03 1.0 0.00e+00 0.0 2.2e+02 2.5e+03 5.6e+01 0 0 10 3 12 0 0 10 3 13 0 GAMG Prol-lift 2 1.0 5.1161e-03 1.0 0.00e+00 0.0 3.6e+01 6.1e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 PCGAMGOptProl 2 1.0 3.6165e-02 1.0 2.28e+07 1.1 1.9e+02 8.5e+03 6.6e+01 0 10 8 9 14 0 10 8 9 15 1802 GAMG smooth 2 1.0 2.6647e-02 1.0 7.77e+06 1.1 7.2e+01 1.4e+04 2.4e+01 0 3 3 5 5 0 3 3 5 5 829 PCGAMGCreateL 2 1.0 3.0547e-01 1.0 6.54e+07 1.2 1.1e+02 6.5e+04 6.0e+01 4 28 5 38 13 4 28 5 38 14 580 GAMG PtAP 2 1.0 3.0267e-01 1.0 6.54e+07 1.2 8.8e+01 7.9e+04 2.6e+01 4 28 4 38 6 4 28 4 38 6 585 GAMG Reduce 1 1.0 1.1347e-01 1.0 2.55e+07 1.6 4.7e+01 5.1e+04 4.7e+01 1 9 2 13 10 1 9 2 13 11 517 PCGAMG Squ l00 1 1.0 2.1897e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 PCGAMG Gal l00 1 1.0 1.9203e-01 1.0 3.99e+07 1.0 6.0e+01 7.7e+04 1.3e+01 2 19 3 25 3 2 19 3 25 3 616 PCGAMG Opt l00 1 1.0 1.8318e-02 1.0 5.03e+06 1.0 3.6e+01 2.1e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 820 PCGAMG Gal l01 1 1.0 1.1071e-01 1.0 2.55e+07 1.6 2.8e+01 8.5e+04 1.3e+01 1 9 1 13 3 1 9 1 13 3 530 PCGAMG Opt l01 1 1.0 5.4255e-03 1.0 2.18e+06 1.4 3.6e+01 6.9e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 999 PCSetUp 1 1.0 3.8858e-01 1.0 8.83e+07 1.2 9.0e+02 1.2e+04 3.1e+02 5 38 39 60 68 5 38 39 60 70 625 PCSetUpOnBlocks 19 1.0 4.7037e-03 30.2 6.28e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1335 PCApply 19 1.0 6.1409e-02 1.0 1.15e+08 1.1 1.2e+03 4.4e+03 1.9e+01 1 53 53 29 4 1 53 53 29 4 5439 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 11 11 Matrix 82 82 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 60 60 IS L to G Mapping 5 5 Vector 181 181 Star Forest Graph 34 34 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 4.49e-08 Average time for MPI_Barrier(): 1.8802e-06 Average time for zero size MPI_Send(): 1.423e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== elasticity strong scaling (3 processes with ndofs=30000) ==== [2026-03-28 11:49:22.937] [RANK: 0] [info] Using partitioner with 69312 cell data [2026-03-28 11:49:22.938] [RANK: 0] [info] Compute partition of cells across ranks [2026-03-28 11:49:22.938] [RANK: 0] [info] Building mesh dual graph [2026-03-28 11:49:22.938] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2026-03-28 11:49:22.951] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2026-03-28 11:49:22.952] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:22.952] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:22.952] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2026-03-28 11:49:22.953] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) [2026-03-28 11:49:22.953] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2026-03-28 11:49:30.688] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2026-03-28 11:49:30.688] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2026-03-28 11:49:30.691] [RANK: 0] [info] Extract basic topology: 69496->69496 [2026-03-28 11:49:30.691] [RANK: 0] [info] Build local dual graph [2026-03-28 11:49:30.691] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2026-03-28 11:49:30.711] [RANK: 0] [info] GPS pseudo-diameter:(118) 1167-16893 [2026-03-28 11:49:30.714] [RANK: 0] [info] Create topology (single cell type) [2026-03-28 11:49:30.714] [RANK: 0] [info] Create topology (generalised) [2026-03-28 11:49:30.715] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2026-03-28 11:49:30.715] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2026-03-28 11:49:30.720] [RANK: 0] [info] Compute ghost indices [2026-03-28 11:49:30.720] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2026-03-28 11:49:30.720] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2026-03-28 11:49:30.722] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2026-03-28 11:49:30.722] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2026-03-28 11:49:30.726] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:30.726] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:30.727] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:30.727] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:30.728] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2026-03-28 11:49:30.728] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2026-03-28 11:49:30.728] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2026-03-28 11:49:30.728] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:30.728] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:30.728] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2026-03-28 11:49:30.728] [RANK: 0] [info] Checking required entities per dimension [2026-03-28 11:49:30.729] [RANK: 0] [info] Cell type: 0 dofmap: 17374x4 [2026-03-28 11:49:30.730] [RANK: 0] [info] Global index computation [2026-03-28 11:49:30.730] [RANK: 0] [info] Got 1 index_maps [2026-03-28 11:49:30.730] [RANK: 0] [info] Get global indices [2026-03-28 11:49:30.730] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:30.730] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times [2026-03-28 11:49:30.731] [RANK: 0] [info] Computing mesh entities of dimension 2 [2026-03-28 11:49:30.743] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:30.743] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:30.791] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:30.791] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:30.792] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2026-03-28 11:49:30.792] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2026-03-28 11:49:30.792] [RANK: 0] [info] Checking required entities per dimension [2026-03-28 11:49:30.792] [RANK: 0] [info] Cell type: 0 dofmap: 17374x4 [2026-03-28 11:49:30.794] [RANK: 0] [info] Global index computation [2026-03-28 11:49:30.794] [RANK: 0] [info] Got 1 index_maps [2026-03-28 11:49:30.794] [RANK: 0] [info] Get global indices [2026-03-28 11:49:30.794] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:30.794] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:30.794] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2026-03-28 11:49:30.794] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2026-03-28 11:49:30.794] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2026-03-28 11:49:30.806] [RANK: 0] [info] Column ghost size increased from 215 to 567 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- [2026-03-28 11:49:30.892] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 Square graph aggressive coarsening MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 Complexity: grid = 1.094 operator = 1.38723 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int 234 1 194 0 2586 3 170 39 30000 3 42 22 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.10501 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=234, cols=234, bs=6 package used to perform factorization: petsc total: nonzeros=50004, allocated nonzeros=50004 using I-node routines: found 60 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=234, cols=234, bs=6 total: nonzeros=45252, allocated nonzeros=45252 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 75 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=234, cols=234, bs=6 total: nonzeros=45252, allocated nonzeros=45252 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 75 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.260119, max 2.86131 eigenvalues provided (min 0.0457575, max 2.60119) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=2586, cols=2586, bs=6 total: nonzeros=439380, allocated nonzeros=439380 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 264 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.258674, max 2.84542 eigenvalues provided (min 0.0716515, max 2.58674) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3395 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3395 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 7.800000 7.800000 Build dofmap data | 2 0.000000 0.000000 Build sparsity | 1 0.000000 0.000000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.060000 0.060000 Compute graph partition (SCOTCH) | 1 7.730000 7.730000 Compute local part of mesh dual graph (mixed) | 2 0.020000 0.040000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 Distribute fixed-degree adjacency list to destination ranks | 1 0.010000 0.010000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 4 0.005000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.190000 0.190000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.450000 0.450000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 7.730000 7.730000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.020000 0.020000 Topology: determine shared index ownership | 1 0.010000 0.010000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble matrix | 1 0.070000 0.070000 ZZZ Assemble vector | 1 0.010000 0.010000 ZZZ Create Mesh | 1 7.800000 7.800000 ZZZ Create RHS function | 1 0.000000 0.000000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.060000 0.060000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.000000 0.000000 ZZZ FunctionSpace | 1 0.000000 0.000000 ZZZ Solve | 1 0.460000 0.460000 *** Number of Krylov iterations: 19 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Sat Mar 28 11:49:31 2026 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 8.411e+00 1.000 8.411e+00 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.257e+08 1.076 2.168e+08 6.504e+08 Flops/sec: 2.684e+07 1.076 2.578e+07 7.733e+07 MPI Msg Count: 8.060e+02 1.043 7.843e+02 2.353e+03 MPI Msg Len (bytes): 7.258e+06 1.268 8.091e+03 1.904e+07 MPI Reductions: 4.630e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 8.4106e+00 100.0% 6.5043e+08 100.0% 2.353e+03 100.0% 8.091e+03 100.0% 4.450e+02 96.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 109 1.0 3.6575e-02 22.2 0.00e+00 0.0 1.8e+02 4.0e+00 1.1e+02 0 0 7 0 24 0 0 7 0 24 0 BuildTwoSidedF 83 1.0 3.7167e-02 17.6 0.00e+00 0.0 9.8e+01 6.0e+04 8.3e+01 0 0 4 31 18 0 0 4 31 19 0 MatMult 199 1.0 5.3065e-02 1.0 1.22e+08 1.1 1.2e+03 5.7e+03 0.0e+00 1 54 51 35 0 1 54 51 35 0 6566 MatMultAdd 40 1.0 5.0209e-03 1.1 9.95e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 5823 MatMultTranspose 40 1.0 7.4952e-03 1.1 9.96e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 3905 MatSolve 20 0.0 8.0379e-04 0.0 2.00e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2483 MatLUFactorSym 1 1.0 1.8137e-03 212.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 2.9395e-03 1357.1 6.76e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2301 MatScale 6 1.0 5.3810e-04 1.0 6.01e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 3279 MatResidual 40 1.0 1.0080e-02 1.0 2.39e+07 1.1 2.4e+02 5.4e+03 0.0e+00 0 10 10 7 0 0 10 10 7 0 6710 MatAssemblyBegin 45 1.0 4.7326e-02 2.8 0.00e+00 0.0 9.8e+01 6.0e+04 2.3e+01 0 0 4 31 5 0 0 4 31 5 0 MatAssemblyEnd 45 1.0 2.8582e-02 1.0 8.52e+04 1.7 1.7e+02 5.0e+02 9.0e+01 0 0 7 0 19 0 0 7 0 20 8 MatGetRowIJ 1 0.0 3.9331e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 1 1.0 2.3632e-03 1.0 0.00e+00 0.0 4.0e+00 3.8e+02 1.5e+01 0 0 0 0 3 0 0 0 0 3 0 MatGetOrdering 1 0.0 9.8779e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 9.3082e-04 1.0 0.00e+00 0.0 1.2e+02 7.9e+02 3.8e+01 0 0 5 1 8 0 0 5 1 9 0 MatZeroEntries 2 1.0 3.7674e-04 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.1197e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 6.0199e-03 1.0 1.18e+05 1.0 2.4e+01 4.0e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 58 MatTranspose 9 1.0 7.7801e-03 1.3 0.00e+00 0.0 1.0e+02 1.8e+03 2.7e+01 0 0 4 1 6 0 0 4 1 6 0 MatMatMultSym 6 1.0 3.5303e-02 1.1 0.00e+00 0.0 6.0e+01 1.0e+04 2.0e+01 0 0 3 3 4 0 0 3 3 4 0 MatMatMultNum 2 1.0 7.3573e-03 1.0 7.17e+06 1.1 1.2e+01 3.2e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 2758 MatPtAPSymbolic 2 1.0 1.5552e-01 1.0 0.00e+00 0.0 6.0e+01 6.1e+04 1.4e+01 2 0 3 19 3 2 0 3 19 3 0 MatPtAPNumeric 2 1.0 1.4058e-01 1.0 6.32e+07 1.2 2.8e+01 1.2e+05 1.2e+01 2 27 1 18 3 2 27 1 18 3 1250 MatTrnMatMultSym 1 1.0 2.1360e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 MatGetLocalMat 7 1.0 2.7017e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 2.1691e-03 1.1 0.00e+00 0.0 8.4e+01 4.5e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 MatCreateGraph 2 1.0 1.3104e-02 1.0 1.55e+05 1.1 1.4e+02 1.6e+03 5.0e+01 0 0 6 1 11 0 0 6 1 11 35 VecMDot 20 1.0 1.0289e-03 1.3 1.21e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 3483 VecTDot 40 1.0 7.7712e-04 1.4 8.15e+05 1.0 0.0e+00 0.0e+00 4.0e+01 0 0 0 0 9 0 0 0 0 9 3088 VecNorm 42 1.0 9.4981e-04 1.8 6.49e+05 1.0 0.0e+00 0.0e+00 4.2e+01 0 0 0 0 9 0 0 0 0 9 2018 VecScale 22 1.0 5.1878e-05 1.2 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 6909 VecCopy 124 1.0 3.4805e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 141 1.0 1.5923e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 40 1.0 3.0275e-04 1.2 7.96e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 7746 VecAYPX 258 1.0 1.2306e-03 1.1 2.12e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5114 VecAXPBYCZ 80 1.0 5.0397e-04 1.0 2.20e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12932 VecMAXPY 22 1.0 3.2301e-04 1.1 1.43e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 13115 VecAssemblyBegin 61 1.0 5.8000e-04 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 VecAssemblyEnd 61 1.0 3.5814e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 182 1.0 9.8608e-04 1.1 9.99e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3007 VecScatterBegin 343 1.0 1.5118e-03 1.2 0.00e+00 0.0 1.8e+03 4.5e+03 0.0e+00 0 0 76 42 0 0 0 76 42 0 0 VecScatterEnd 343 1.0 1.1033e-02 3.4 1.33e+04 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3 VecNormalize 22 1.0 4.8037e-04 1.6 3.62e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 2238 SFSetGraph 26 1.0 1.1768e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 26 1.0 6.3664e-04 1.0 0.00e+00 0.0 2.5e+02 4.8e+02 2.6e+01 0 0 11 1 6 0 0 11 1 6 0 SFBcastBegin 10 1.0 3.5633e-05 1.0 0.00e+00 0.0 6.0e+01 1.3e+03 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 10 1.0 5.0834e-05 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 3 1.0 4.8243e-05 1.1 0.00e+00 0.0 1.5e+01 6.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 3 1.0 1.5574e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 356 1.0 5.5746e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 356 1.0 9.1880e-05 1.2 1.33e+04 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 345 KSPSetUp 1 1.0 5.3706e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 7.1205e-02 1.0 1.38e+08 1.1 1.4e+03 4.7e+03 8.0e+01 1 62 59 35 17 1 62 59 35 18 5667 KSPGMRESOrthog 20 1.0 1.3045e-03 1.2 2.41e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 5495 PCSetUp_GAMG+ 1 1.0 3.7939e-01 1.0 8.60e+07 1.1 9.0e+02 1.3e+04 3.1e+02 5 37 38 59 67 5 37 38 59 70 635 PCGAMGCreateG 2 1.0 1.3110e-02 1.0 1.55e+05 1.1 1.4e+02 1.6e+03 5.0e+01 0 0 6 1 11 0 0 6 1 11 35 GAMG Coarsen 4 1.0 2.3745e-02 1.0 0.00e+00 0.0 2.0e+02 7.6e+03 5.5e+01 0 0 8 8 12 0 0 8 8 12 0 GAMG MIS/Agg 2 1.0 2.2398e-02 1.0 0.00e+00 0.0 1.6e+02 8.2e+03 5.1e+01 0 0 7 7 11 0 0 7 7 11 0 PCGAMGProl 2 1.0 8.5951e-03 1.0 0.00e+00 0.0 2.6e+02 3.1e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 GAMG Prol-col 2 1.0 3.1553e-03 1.0 0.00e+00 0.0 2.2e+02 2.5e+03 5.6e+01 0 0 10 3 12 0 0 10 3 13 0 GAMG Prol-lift 2 1.0 5.1828e-03 1.0 0.00e+00 0.0 3.6e+01 6.3e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 PCGAMGOptProl 2 1.0 3.5050e-02 1.0 2.27e+07 1.1 1.9e+02 8.6e+03 6.6e+01 0 10 8 9 14 0 10 8 9 15 1848 GAMG smooth 2 1.0 2.5683e-02 1.0 7.74e+06 1.1 7.2e+01 1.4e+04 2.4e+01 0 3 3 5 5 0 3 3 5 5 855 PCGAMGCreateL 2 1.0 2.9817e-01 1.0 6.32e+07 1.2 1.1e+02 6.6e+04 6.0e+01 4 27 5 37 13 4 27 5 37 13 589 GAMG PtAP 2 1.0 2.9552e-01 1.0 6.32e+07 1.2 8.8e+01 8.0e+04 2.6e+01 4 27 4 37 6 4 27 4 37 6 595 GAMG Reduce 1 1.0 1.0835e-01 1.0 2.38e+07 1.6 4.7e+01 5.3e+04 4.7e+01 1 9 2 13 10 1 9 2 13 11 542 PCGAMG Squ l00 1 1.0 2.1363e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 PCGAMG Gal l00 1 1.0 1.8988e-01 1.0 3.93e+07 1.0 6.0e+01 7.6e+04 1.3e+01 2 18 3 24 3 2 18 3 24 3 616 PCGAMG Opt l00 1 1.0 1.7315e-02 1.0 5.06e+06 1.0 3.6e+01 2.1e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 867 PCGAMG Gal l01 1 1.0 1.0570e-01 1.0 2.38e+07 1.6 2.8e+01 8.9e+04 1.3e+01 1 9 1 13 3 1 9 1 13 3 556 PCGAMG Opt l01 1 1.0 5.1617e-03 1.0 2.11e+06 1.4 3.6e+01 6.7e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 1021 PCSetUp 1 1.0 3.7940e-01 1.0 8.60e+07 1.1 9.0e+02 1.3e+04 3.1e+02 5 37 38 59 67 5 37 38 59 70 635 PCSetUpOnBlocks 20 1.0 4.9741e-03 33.8 6.76e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1360 PCApply 20 1.0 6.3042e-02 1.0 1.19e+08 1.1 1.3e+03 4.4e+03 2.0e+01 1 54 54 30 4 1 54 54 30 4 5545 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 11 11 Matrix 82 82 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 60 60 IS L to G Mapping 5 5 Vector 181 181 Star Forest Graph 34 34 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 4.64e-08 Average time for MPI_Barrier(): 2.465e-06 Average time for zero size MPI_Send(): 1.164e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== poisson weak scaling (3 processes with ndofs=10000) ==== [2026-03-28 11:49:31.780] [RANK: 0] [info] Using partitioner with 216000 cell data [2026-03-28 11:49:31.782] [RANK: 0] [info] Compute partition of cells across ranks [2026-03-28 11:49:31.782] [RANK: 0] [info] Building mesh dual graph [2026-03-28 11:49:31.782] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2026-03-28 11:49:31.842] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2026-03-28 11:49:31.845] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:31.845] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:31.845] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2026-03-28 11:49:31.848] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) [2026-03-28 11:49:31.848] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2026-03-28 11:49:45.270] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2026-03-28 11:49:45.280] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2026-03-28 11:49:45.284] [RANK: 0] [info] Extract basic topology: 212772->212772 [2026-03-28 11:49:45.285] [RANK: 0] [info] Build local dual graph [2026-03-28 11:49:45.285] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2026-03-28 11:49:45.326] [RANK: 0] [info] GPS pseudo-diameter:(162) 834-51709 [2026-03-28 11:49:45.333] [RANK: 0] [info] Create topology (single cell type) [2026-03-28 11:49:45.333] [RANK: 0] [info] Create topology (generalised) [2026-03-28 11:49:45.368] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2026-03-28 11:49:45.368] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2026-03-28 11:49:45.381] [RANK: 0] [info] Compute ghost indices [2026-03-28 11:49:45.381] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2026-03-28 11:49:45.385] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2026-03-28 11:49:45.389] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2026-03-28 11:49:45.390] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2026-03-28 11:49:45.404] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:45.409] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:45.409] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:45.409] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:45.417] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2026-03-28 11:49:45.417] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2026-03-28 11:49:45.417] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2026-03-28 11:49:45.417] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:45.418] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:45.418] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2026-03-28 11:49:45.418] [RANK: 0] [info] Checking required entities per dimension [2026-03-28 11:49:45.419] [RANK: 0] [info] Cell type: 0 dofmap: 53193x4 [2026-03-28 11:49:45.423] [RANK: 0] [info] Global index computation [2026-03-28 11:49:45.423] [RANK: 0] [info] Got 1 index_maps [2026-03-28 11:49:45.423] [RANK: 0] [info] Get global indices [2026-03-28 11:49:45.428] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:45.428] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times [2026-03-28 11:49:45.431] [RANK: 0] [info] Computing mesh entities of dimension 2 [2026-03-28 11:49:45.471] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:45.481] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:45.578] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:45.578] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:45.580] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2026-03-28 11:49:45.580] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2026-03-28 11:49:45.582] [RANK: 0] [info] Checking required entities per dimension [2026-03-28 11:49:45.582] [RANK: 0] [info] Cell type: 0 dofmap: 53193x4 [2026-03-28 11:49:45.586] [RANK: 0] [info] Global index computation [2026-03-28 11:49:45.586] [RANK: 0] [info] Got 1 index_maps [2026-03-28 11:49:45.587] [RANK: 0] [info] Get global indices [2026-03-28 11:49:45.595] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:45.595] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:45.596] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2026-03-28 11:49:45.596] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2026-03-28 11:49:45.596] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2026-03-28 11:49:45.616] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2026-03-28 11:49:45.616] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) [2026-03-28 11:49:45.654] [RANK: 0] [info] Column ghost size increased from 451 to 1224 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- [2026-03-28 11:49:45.723] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 13.660000 13.660000 Build dofmap data | 2 0.015000 0.030000 Build sparsity | 1 0.020000 0.020000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.140000 0.140000 Compute graph partition (SCOTCH) | 1 13.430000 13.430000 Compute local part of mesh dual graph (mixed) | 2 0.065000 0.130000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 4 0.000000 0.000000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.040000 0.040000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.010000 0.020000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.210000 0.210000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 13.430000 13.430000 SparsityPattern::finalize | 1 0.030000 0.030000 Topology: create | 1 0.070000 0.070000 Topology: determine shared index ownership | 1 0.030000 0.030000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble | 1 0.120000 0.120000 ZZZ Assemble matrix | 1 0.050000 0.050000 ZZZ Assemble vector | 1 0.000000 0.000000 ZZZ Create Mesh | 1 13.660000 13.660000 ZZZ Create RHS function | 1 0.040000 0.040000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.150000 0.150000 ZZZ FunctionSpace | 1 0.020000 0.020000 ZZZ Solve | 1 0.220000 0.220000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Sat Mar 28 11:49:45 2026 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 1.416e+01 1.000 1.416e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.554e+06 1.031 3.489e+06 1.047e+07 Flops/sec: 2.509e+05 1.031 2.464e+05 7.392e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.872e+05 1.223 5.757e+03 5.181e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.4161e+01 100.0% 1.0467e+07 100.0% 9.000e+01 100.0% 5.757e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 1.4679e-02 34.6 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 BuildTwoSidedF 2 1.0 1.4602e-02 40.4 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.7919e-03 1.0 1.95e+06 1.0 4.2e+01 5.5e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 3198 MatConvert 1 1.0 3.5621e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 1.5917e-02 8.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 3.2029e-03 1.1 3.77e+03 1.3 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 3 MatGetRowIJ 4 1.0 1.4010e-06 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 5.0243e-04 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 9.9963e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 6.4919e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 2.8137e-04 1.3 3.23e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 3388 VecNorm 8 1.0 4.0192e-04 2.6 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 1186 VecCopy 2 1.0 4.7085e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 5.9594e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 1.1163e-04 1.1 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 7472 VecAYPX 6 1.0 5.8001e-05 1.2 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 6164 VecScatterBegin 7 1.0 1.1442e-04 1.3 0.00e+00 0.0 4.2e+01 5.5e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 2.8875e-04 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 3.2754e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.8872e-04 1.1 0.00e+00 0.0 3.6e+01 8.0e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 2.6849e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 1.5210e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 7.7763e-05 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 6.3377e-02 1.0 2.83e+06 1.0 4.2e+01 5.5e+03 2.4e+01 0 80 47 45 33 0 80 47 45 44 132 PCSetUp 1 1.0 1.4867e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 6.0831e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 1 1 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 4.94e-08 Average time for MPI_Barrier(): 2.1974e-06 Average time for zero size MPI_Send(): 2.987e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line ==== poisson strong scaling (3 processes with ndofs=30000) ==== [2026-03-28 11:49:46.346] [RANK: 0] [info] Using partitioner with 216000 cell data [2026-03-28 11:49:46.348] [RANK: 0] [info] Compute partition of cells across ranks [2026-03-28 11:49:46.348] [RANK: 0] [info] Building mesh dual graph [2026-03-28 11:49:46.348] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2026-03-28 11:49:46.390] [RANK: 0] [info] Build nonlocal part of mesh dual graph [2026-03-28 11:49:46.410] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:49:46.410] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:49:46.410] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 [2026-03-28 11:49:46.412] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) [2026-03-28 11:49:46.412] [RANK: 0] [info] Compute graph partition using PT-SCOTCH [2026-03-28 11:49:59.971] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2026-03-28 11:49:59.971] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2026-03-28 11:49:59.977] [RANK: 0] [info] Extract basic topology: 212912->212912 [2026-03-28 11:49:59.978] [RANK: 0] [info] Build local dual graph [2026-03-28 11:49:59.978] [RANK: 0] [info] Build local part of mesh dual graph (mixed) [2026-03-28 11:50:00.038] [RANK: 0] [info] GPS pseudo-diameter:(166) 51449-3654 [2026-03-28 11:50:00.048] [RANK: 0] [info] Create topology (single cell type) [2026-03-28 11:50:00.049] [RANK: 0] [info] Create topology (generalised) [2026-03-28 11:50:00.059] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 [2026-03-28 11:50:00.059] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 [2026-03-28 11:50:00.077] [RANK: 0] [info] Compute ghost indices [2026-03-28 11:50:00.077] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 [2026-03-28 11:50:00.077] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 [2026-03-28 11:50:00.082] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2026-03-28 11:50:00.082] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2026-03-28 11:50:00.099] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:50:00.100] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:50:00.100] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:50:00.100] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:50:00.107] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 [2026-03-28 11:50:00.107] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 [2026-03-28 11:50:00.107] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 [2026-03-28 11:50:00.107] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:50:00.107] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:50:00.107] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 [2026-03-28 11:50:00.108] [RANK: 0] [info] Checking required entities per dimension [2026-03-28 11:50:00.108] [RANK: 0] [info] Cell type: 0 dofmap: 53228x4 [2026-03-28 11:50:00.112] [RANK: 0] [info] Global index computation [2026-03-28 11:50:00.112] [RANK: 0] [info] Got 1 index_maps [2026-03-28 11:50:00.113] [RANK: 0] [info] Get global indices [2026-03-28 11:50:00.113] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:50:00.113] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times [2026-03-28 11:50:00.116] [RANK: 0] [info] Computing mesh entities of dimension 2 [2026-03-28 11:50:00.156] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:50:00.158] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:50:00.248] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:50:00.248] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:50:00.250] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2026-03-28 11:50:00.250] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. [2026-03-28 11:50:00.251] [RANK: 0] [info] Checking required entities per dimension [2026-03-28 11:50:00.251] [RANK: 0] [info] Cell type: 0 dofmap: 53228x4 [2026-03-28 11:50:00.257] [RANK: 0] [info] Global index computation [2026-03-28 11:50:00.257] [RANK: 0] [info] Got 1 index_maps [2026-03-28 11:50:00.258] [RANK: 0] [info] Get global indices [2026-03-28 11:50:00.258] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 [2026-03-28 11:50:00.258] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 [2026-03-28 11:50:00.259] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2026-03-28 11:50:00.259] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) [2026-03-28 11:50:00.259] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) [2026-03-28 11:50:00.278] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) [2026-03-28 11:50:00.278] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) [2026-03-28 11:50:00.296] [RANK: 0] [info] Column ghost size increased from 468 to 1251 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 dolfinx hash: debian_1:0.9.0-6+b2 ufl hash: 475c28073ccb3c02130118a9af65e8309bf276c3 petsc version: Petsc Release Version 3.22.2, Nov 28, 2024 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- [2026-03-28 11:50:00.347] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 13.770000 13.770000 Build dofmap data | 2 0.005000 0.010000 Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.130000 0.130000 Compute graph partition (SCOTCH) | 1 13.550000 13.550000 Compute local part of mesh dual graph (mixed) | 2 0.060000 0.120000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.030000 0.030000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 2 0.000000 0.000000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.020000 0.020000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.210000 0.210000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 13.550000 13.550000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.070000 0.070000 Topology: determine shared index ownership | 1 0.020000 0.020000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble | 1 0.090000 0.090000 ZZZ Assemble matrix | 1 0.040000 0.040000 ZZZ Assemble vector | 1 0.010000 0.010000 ZZZ Create Mesh | 1 13.770000 13.770000 ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.140000 0.140000 ZZZ FunctionSpace | 1 0.000000 0.000000 ZZZ Solve | 1 0.210000 0.210000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Sat Mar 28 11:50:00 2026 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total Time (sec): 1.421e+01 1.000 1.421e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.555e+06 1.031 3.489e+06 1.047e+07 Flops/sec: 2.502e+05 1.031 2.455e+05 7.366e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.808e+05 1.165 5.737e+03 5.163e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.4211e+01 100.0% 1.0468e+07 100.0% 9.000e+01 100.0% 5.737e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 3.1473e-03 58.7 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 BuildTwoSidedF 2 1.0 3.1354e-03 62.5 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 2.0135e-03 1.0 1.95e+06 1.0 4.2e+01 5.5e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 2846 MatConvert 1 1.0 3.8483e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 4.4735e-03 2.9 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 2.8913e-03 1.0 3.74e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 4 MatGetRowIJ 4 1.0 1.4010e-06 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 3.7796e-04 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 1.0669e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 7.6936e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 2.9264e-04 1.2 3.23e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 3258 VecNorm 8 1.0 2.5705e-04 1.3 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 1854 VecCopy 2 1.0 4.5359e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 5.7793e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 1.4214e-04 1.1 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 5869 VecAYPX 6 1.0 9.6168e-05 1.1 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 3717 VecScatterBegin 7 1.0 1.5008e-04 1.1 0.00e+00 0.0 4.2e+01 5.5e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 1.4218e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 2.9943e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.1861e-04 1.0 0.00e+00 0.0 3.6e+01 8.0e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 3.2086e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 1.8950e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 6.9611e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 6.6639e-02 1.0 2.84e+06 1.0 4.2e+01 5.5e+03 2.4e+01 0 80 47 45 33 0 80 47 45 44 125 PCSetUp 1 1.0 1.3904e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 6.3717e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 1 1 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 4.88e-08 Average time for MPI_Barrier(): 1.507e-06 Average time for zero size MPI_Send(): 2.336e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --with-library-name-suffix=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-12-12 12:04:02 on reproducible Machine characteristics: Linux-6.1.0-28-amd64-x86_64-with-glibc2.40 Using PETSc directory: /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.22.2+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu-dist -I/usr/include/superlu -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -lsuperlu_dist -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: strong source: command line make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.9.0-2_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.9.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.9.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.9.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2588651 and its subdirectories I: Current time: Sat Mar 28 11:50:15 +14 2026 I: pbuilder-time-stamp: 1774648215 + false + set +x Fri Mar 27 21:50:15 UTC 2026 I: Signing ./b2/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo as fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc Fri Mar 27 21:50:15 UTC 2026 I: Signed ./b2/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo as ./b2/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc Fri Mar 27 21:50:15 UTC 2026 - build #2 for fenicsx-performance-tests/trixie/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Fri Mar 27 21:50:15 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-hgTRWdNs, removing. /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM: total 304 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 15:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 15:27 b2 -rw-r--r-- 1 jenkins jenkins 2467 Nov 10 15:03 fenicsx-performance-tests_0.9.0-2.dsc -rw------- 1 jenkins jenkins 291154 Feb 22 15:22 rbuildlog.j49b8Ri /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b1: total 6792 -rw-r--r-- 1 jenkins jenkins 287176 Feb 22 15:22 build.log -rw-r--r-- 1 jenkins jenkins 6272668 Feb 22 15:22 fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 18124 Feb 22 15:22 fenicsx-performance-tests-source_0.9.0-2_all.deb -rw-r--r-- 1 jenkins jenkins 6360 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2467 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2.dsc -rw-r--r-- 1 jenkins jenkins 16466 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 17348 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2042 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 285460 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1391 Feb 22 15:22 fenicsx-performance-tests_0.9.0-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b2: total 6772 -rw-r--r-- 1 jenkins jenkins 288986 Feb 22 15:27 build.log -rw-r--r-- 1 jenkins jenkins 6272692 Feb 22 15:27 fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 18124 Feb 22 15:27 fenicsx-performance-tests-source_0.9.0-2_all.deb -rw-r--r-- 1 jenkins jenkins 6360 Feb 22 15:27 fenicsx-performance-tests_0.9.0-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2467 Feb 22 15:27 fenicsx-performance-tests_0.9.0-2.dsc -rw-r--r-- 1 jenkins jenkins 16475 Feb 22 15:27 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 17357 Feb 22 15:27 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2042 Feb 22 15:27 fenicsx-performance-tests_0.9.0-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 285336 Feb 22 15:27 fenicsx-performance-tests_0.9.0-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1391 Feb 22 15:27 fenicsx-performance-tests_0.9.0-2_source.changes Sat Feb 22 15:27:16 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sat Feb 22 15:27:16 UTC 2025 I: fenicsx-performance-tests_0.9.0-2_amd64.changes: Format: 1.8 Date: Wed, 06 Nov 2024 07:19:30 +0000 Source: fenicsx-performance-tests Binary: fenicsx-performance-tests fenicsx-performance-tests-dbgsym fenicsx-performance-tests-source Architecture: amd64 all Version: 0.9.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Francesco Ballarin Description: fenicsx-performance-tests - Performance test codes for FEniCS/DOLFIN-X (binaries) fenicsx-performance-tests-source - Performance test codes for FEniCS/DOLFIN-X (source) Changes: fenicsx-performance-tests (0.9.0-2) unstable; urgency=medium . * Upload to unstable Checksums-Sha1: e62acd98e490b816a3406abf0bd5381baafce665 6272668 fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb 70201d75de6ec71f21330520c0dc9c5ada93cacf 18124 fenicsx-performance-tests-source_0.9.0-2_all.deb 19d64999a082346eab020420b1e3aff3b33d735f 16466 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo 4c692e6469396933e6522e22c0a1ae3349160954 285460 fenicsx-performance-tests_0.9.0-2_amd64.deb Checksums-Sha256: dbee369726c470563d437435555d2805ffbbd589e40575c1764a8ddb2d865b8d 6272668 fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb 780ddf0553809800fd57a1e069f987776c98ac93c1cf4396468f54e687751451 18124 fenicsx-performance-tests-source_0.9.0-2_all.deb 23eaebd8d1dad08fa22255a4cfd2b0d19ae837b4395bf3c9f452ccad2df98ffc 16466 fenicsx-performance-tests_0.9.0-2_amd64.buildinfo f8eccb039619ce80168e39218f2b88ac0fdebae48f2e7d629e0218b18428f0bc 285460 fenicsx-performance-tests_0.9.0-2_amd64.deb Files: c016a32f2cb6ccf520a982fdc88da78f 6272668 debug optional fenicsx-performance-tests-dbgsym_0.9.0-2_amd64.deb eccf4d16cdeb02a8ba0606a6b5636d72 18124 libdevel optional fenicsx-performance-tests-source_0.9.0-2_all.deb 5d3e39fee45f6e37f0c1172103bc170f 16466 libdevel optional fenicsx-performance-tests_0.9.0-2_amd64.buildinfo 23b8fa533bfa06749cc7c75b0af2d00c 285460 libdevel optional fenicsx-performance-tests_0.9.0-2_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/fenicsx-performance-tests_0.9.0-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/fenicsx-performance-tests_0.9.0-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/fenicsx-performance-tests_0.9.0-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/fenicsx-performance-tests_0.9.0-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbd/trixie/amd64/fenicsx-performance-tests_0.9.0-2.diffoscope.html' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/trixie/amd64/fenicsx-performance-tests_0.9.0-2.diffoscope.txt.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdjson/trixie/amd64/fenicsx-performance-tests_0.9.0-2.diffoscope.json.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/fenicsx-performance-tests_0.9.0-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 15:22:09.339926354 +0000 +++ b2/build.log 2025-02-22 15:27:16.421979894 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Feb 22 03:11:15 -12 2025 -I: pbuilder-time-stamp: 1740237075 +I: Current time: Sat Mar 28 11:45:12 +14 2026 +I: pbuilder-time-stamp: 1774647912 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2078850/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 27 21:45 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='b9ac3d08dbf449ba82faa1450e64986d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2078850' - PS1='# ' - PS2='> ' + INVOCATION_ID=d67deb64125d4b789a20936d5b7a984e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2588651 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/pbuilderrc_XZdh --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b1 --logfile b1/build.log fenicsx-performance-tests_0.9.0-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/pbuilderrc_nRM3 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b2 --logfile b2/build.log fenicsx-performance-tests_0.9.0-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2078850/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -82,7 +114,7 @@ Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.9~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19808 files and directories currently installed.) +(Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -467,10 +499,10 @@ Get: 348 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 350 http://deb.debian.org/debian trixie/main amd64 libdolfinx-dev amd64 1:0.9.0-6+b2 [202 kB] -Fetched 289 MB in 22s (13.3 MB/s) +Fetched 289 MB in 20s (14.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19808 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. @@ -483,7 +515,7 @@ Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20142 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20192 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. @@ -519,7 +551,7 @@ Unpacking libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21152 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21202 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_amd64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package libproc2-0:amd64. @@ -1587,8 +1619,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Feb 22 15:17:26 UTC 2025. -Universal Time is now: Sat Feb 22 15:17:26 UTC 2025. +Local time is now: Fri Mar 27 21:48:22 UTC 2026. +Universal Time is now: Fri Mar 27 21:48:22 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-4.1) ... @@ -1937,7 +1969,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes +I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.9.0-2 dpkg-buildpackage: info: source distribution unstable @@ -2021,7 +2057,7 @@ -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall --- Configuring done (9.6s) +-- Configuring done (2.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -2034,7 +2070,7 @@ -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -2042,29 +2078,29 @@ make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' -[ 9%] Generating Elasticity.c -[ 18%] Generating Poisson.c +[ 9%] Generating Poisson.c +[ 18%] Generating Elasticity.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Poisson.py ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Elasticity.py cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' -[ 27%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -/usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/main.cpp -[ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -[ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -[ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -/usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp +[ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -[ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o +[ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o +[ 63%] Building CXX object 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp +/usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp +[ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/c++ -DADIOS2_USE_MPI 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-DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/Elasticity.c -[ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/Poisson.c [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 @@ -2078,67 +2114,67 @@ make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== -[2025-02-22 03:20:17.247] [RANK: 0] [info] Using partitioner with 69312 cell data -[2025-02-22 03:20:17.247] [RANK: 0] [info] Compute partition of cells across ranks -[2025-02-22 03:20:17.248] [RANK: 0] [info] Building mesh dual graph -[2025-02-22 03:20:17.248] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2025-02-22 03:20:17.310] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2025-02-22 03:20:17.325] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:17.356] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:17.356] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2025-02-22 03:20:17.469] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) -[2025-02-22 03:20:17.469] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2025-02-22 03:20:29.305] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2025-02-22 03:20:29.348] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2025-02-22 03:20:29.411] [RANK: 0] [info] Extract basic topology: 69916->69916 -[2025-02-22 03:20:29.411] [RANK: 0] [info] Build local dual graph -[2025-02-22 03:20:29.411] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2025-02-22 03:20:29.495] [RANK: 0] [info] GPS pseudo-diameter:(119) 603-16248 -[2025-02-22 03:20:29.508] [RANK: 0] [info] Create topology (single cell type) -[2025-02-22 03:20:29.508] [RANK: 0] [info] Create topology (generalised) -[2025-02-22 03:20:29.523] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2025-02-22 03:20:29.544] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2025-02-22 03:20:29.655] [RANK: 0] [info] Compute ghost indices -[2025-02-22 03:20:29.655] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2025-02-22 03:20:29.666] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2025-02-22 03:20:29.711] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2025-02-22 03:20:29.714] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2025-02-22 03:20:29.842] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:29.852] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:29.877] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:29.889] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:29.911] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2025-02-22 03:20:29.915] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2025-02-22 03:20:29.915] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2025-02-22 03:20:29.925] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:29.939] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:29.939] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2025-02-22 03:20:29.981] [RANK: 0] [info] Checking required entities per dimension -[2025-02-22 03:20:29.981] [RANK: 0] [info] Cell type: 0 dofmap: 17479x4 -[2025-02-22 03:20:29.985] [RANK: 0] [info] Global index computation -[2025-02-22 03:20:29.985] [RANK: 0] [info] Got 1 index_maps -[2025-02-22 03:20:29.985] [RANK: 0] [info] Get global indices -[2025-02-22 03:20:30.036] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:30.052] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:13.965] [RANK: 0] [info] Using partitioner with 69312 cell data +[2026-03-28 11:49:13.966] [RANK: 0] [info] Compute partition of cells across ranks +[2026-03-28 11:49:13.966] [RANK: 0] [info] Building mesh dual graph +[2026-03-28 11:49:13.966] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2026-03-28 11:49:13.979] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2026-03-28 11:49:13.980] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:13.980] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:13.980] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2026-03-28 11:49:13.981] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) +[2026-03-28 11:49:13.981] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2026-03-28 11:49:21.652] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2026-03-28 11:49:21.665] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2026-03-28 11:49:21.667] [RANK: 0] [info] Extract basic topology: 69312->69312 +[2026-03-28 11:49:21.667] [RANK: 0] [info] Build local dual graph +[2026-03-28 11:49:21.667] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2026-03-28 11:49:21.687] [RANK: 0] [info] GPS pseudo-diameter:(119) 16877-1290 +[2026-03-28 11:49:21.689] [RANK: 0] [info] Create topology (single cell type) +[2026-03-28 11:49:21.689] [RANK: 0] [info] Create topology (generalised) +[2026-03-28 11:49:21.691] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2026-03-28 11:49:21.692] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2026-03-28 11:49:21.697] [RANK: 0] [info] Compute ghost indices +[2026-03-28 11:49:21.697] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2026-03-28 11:49:21.697] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2026-03-28 11:49:21.698] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2026-03-28 11:49:21.698] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2026-03-28 11:49:21.704] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:21.704] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:21.704] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:21.704] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:21.706] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2026-03-28 11:49:21.706] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2026-03-28 11:49:21.706] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2026-03-28 11:49:21.706] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:21.706] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:21.706] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2026-03-28 11:49:21.707] [RANK: 0] [info] Checking required entities per dimension +[2026-03-28 11:49:21.707] [RANK: 0] [info] Cell type: 0 dofmap: 17328x4 +[2026-03-28 11:49:21.710] [RANK: 0] [info] Global index computation +[2026-03-28 11:49:21.710] [RANK: 0] [info] Got 1 index_maps +[2026-03-28 11:49:21.710] [RANK: 0] [info] Get global indices +[2026-03-28 11:49:21.710] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:21.710] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times -[2025-02-22 03:20:30.101] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2025-02-22 03:20:30.173] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:30.186] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:30.413] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:30.414] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:30.415] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2025-02-22 03:20:30.415] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2025-02-22 03:20:30.417] [RANK: 0] [info] Checking required entities per dimension -[2025-02-22 03:20:30.417] [RANK: 0] [info] Cell type: 0 dofmap: 17479x4 -[2025-02-22 03:20:30.420] [RANK: 0] [info] Global index computation -[2025-02-22 03:20:30.421] [RANK: 0] [info] Got 1 index_maps -[2025-02-22 03:20:30.421] [RANK: 0] [info] Get global indices -[2025-02-22 03:20:30.456] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:30.456] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:30.464] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2025-02-22 03:20:30.464] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2025-02-22 03:20:30.464] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2025-02-22 03:20:30.524] [RANK: 0] [info] Column ghost size increased from 230 to 553 +[2026-03-28 11:49:21.712] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2026-03-28 11:49:21.734] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:21.734] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:21.785] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:21.785] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:21.786] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2026-03-28 11:49:21.786] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2026-03-28 11:49:21.787] [RANK: 0] [info] Checking required entities per dimension +[2026-03-28 11:49:21.787] [RANK: 0] [info] Cell type: 0 dofmap: 17328x4 +[2026-03-28 11:49:21.788] [RANK: 0] [info] Global index computation +[2026-03-28 11:49:21.788] [RANK: 0] [info] Got 1 index_maps +[2026-03-28 11:49:21.789] [RANK: 0] [info] Get global indices +[2026-03-28 11:49:21.789] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:21.789] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:21.789] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2026-03-28 11:49:21.789] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2026-03-28 11:49:21.789] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2026-03-28 11:49:21.802] [RANK: 0] [info] Column ghost size increased from 219 to 551 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -2152,7 +2188,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -[2025-02-22 03:20:31.073] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2026-03-28 11:49:21.893] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -2173,12 +2209,12 @@ MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 - Complexity: grid = 1.0916 operator = 1.37504 + Complexity: grid = 1.0958 operator = 1.39537 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int - 216 1 184 0 - 2532 3 170 37 - 30000 3 42 21 + 228 1 191 0 + 2646 3 171 37 + 30000 3 42 22 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly @@ -2203,26 +2239,26 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.07428 + factor fill ratio given 5., needed 1.09302 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=216, cols=216, bs=6 + rows=228, cols=228, bs=6 package used to perform factorization: petsc - total: nonzeros=42696, allocated nonzeros=42696 - using I-node routines: found 54 nodes, limit used is 5 + total: nonzeros=47376, allocated nonzeros=47376 + using I-node routines: found 59 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=216, cols=216, bs=6 - total: nonzeros=39744, allocated nonzeros=39744 + rows=228, cols=228, bs=6 + total: nonzeros=43344, allocated nonzeros=43344 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 71 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=216, cols=216, bs=6 - total: nonzeros=39744, allocated nonzeros=39744 + rows=228, cols=228, bs=6 + total: nonzeros=43344, allocated nonzeros=43344 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 71 nodes, limit used is 5 @@ -2230,8 +2266,8 @@ KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.262745, max 2.8902 - eigenvalues provided (min 0.0401956, max 2.62745) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.260654, max 2.86719 + eigenvalues provided (min 0.0421999, max 2.60654) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2242,18 +2278,18 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=2532, cols=2532, bs=6 - total: nonzeros=429624, allocated nonzeros=429624 + rows=2646, cols=2646, bs=6 + total: nonzeros=451476, allocated nonzeros=451476 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 262 nodes, limit used is 5 + using I-node (on process 0) routines: found 280 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.258328, max 2.84161 - eigenvalues provided (min 0.0694389, max 2.58328) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.258305, max 2.84136 + eigenvalues provided (min 0.0700383, max 2.58305) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2268,7 +2304,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3400 nodes, limit used is 5 + using I-node (on process 0) routines: found 3383 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -2277,47 +2313,47 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3400 nodes, limit used is 5 + using I-node (on process 0) routines: found 3383 nodes, limit used is 5 -[MPI_MAX] Summary of timings | reps wall avg wall tot ---------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 12.870000 12.870000 -Build dofmap data | 2 0.070000 0.140000 -Build sparsity | 1 0.030000 0.030000 -Compute connectivity 2-0 | 1 0.010000 0.010000 -Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.310000 0.310000 -Compute graph partition (SCOTCH) | 1 11.850000 11.850000 -Compute local part of mesh dual graph (mixed) | 2 0.080000 0.160000 -Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.180000 0.180000 -Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.110000 0.110000 -Distribute row-wise data (scalable) | 1 0.080000 0.080000 -GPS: create_level_structure | 6 0.005000 0.010000 -Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 -Init MPI | 1 0.500000 0.500000 -Init PETSc | 1 0.160000 0.160000 -Init dofmap from element dofmap | 2 0.005000 0.010000 -Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 3.840000 3.840000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.030000 0.030000 -SCOTCH: call SCOTCH_dgraphPart | 1 11.840000 11.840000 -SparsityPattern::finalize | 1 0.030000 0.030000 -Topology: create | 1 0.400000 0.400000 -Topology: determine shared index ownership | 1 0.160000 0.160000 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 -ZZZ Assemble matrix | 1 0.450000 0.450000 -ZZZ Assemble vector | 1 0.030000 0.030000 -ZZZ Create Mesh | 1 12.900000 12.900000 -ZZZ Create RHS function | 1 0.050000 0.050000 -ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.330000 0.330000 -ZZZ Create forms | 1 0.000000 0.000000 -ZZZ Create near-nullspace | 1 0.040000 0.040000 -ZZZ FunctionSpace | 1 0.050000 0.050000 -ZZZ Solve | 1 3.850000 3.850000 -*** Number of Krylov iterations: 19 +[MPI_MAX] Summary of timings | reps wall avg wall tot +------------------------------------------------------------------------------------------------------- +Build BoxMesh (tetrahedra) | 1 7.750000 7.750000 +Build dofmap data | 2 0.000000 0.000000 +Build sparsity | 1 0.000000 0.000000 +Compute connectivity 2-0 | 1 0.000000 0.000000 +Compute dof reordering map | 2 0.000000 0.000000 +Compute entities of dim = 2 | 1 0.070000 0.070000 +Compute graph partition (SCOTCH) | 1 7.680000 7.680000 +Compute local part of mesh dual graph (mixed) | 2 0.015000 0.030000 +Compute local-to-local map | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.000000 0.000000 +Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 +Distribute row-wise data (scalable) | 1 0.000000 0.000000 +GPS: create_level_structure | 2 0.000000 0.000000 +Gibbs-Poole-Stockmeyer ordering | 1 0.000000 0.000000 +Init MPI | 1 0.020000 0.020000 +Init PETSc | 1 0.010000 0.010000 +Init dofmap from element dofmap | 2 0.000000 0.000000 +Init logging | 1 0.000000 0.000000 +PETSc Krylov solver | 1 0.460000 0.460000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 +SCOTCH: call SCOTCH_dgraphPart | 1 7.680000 7.680000 +SparsityPattern::finalize | 1 0.010000 0.010000 +Topology: create | 1 0.020000 0.020000 +Topology: determine shared index ownership | 1 0.010000 0.010000 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 +ZZZ Assemble matrix | 1 0.070000 0.070000 +ZZZ Assemble vector | 1 0.000000 0.000000 +ZZZ Create Mesh | 1 7.750000 7.750000 +ZZZ Create RHS function | 1 0.010000 0.010000 +ZZZ Create boundary conditions | 1 0.000000 0.000000 +ZZZ Create facets and facet->cell connectivity | 1 0.070000 0.070000 +ZZZ Create forms | 1 0.000000 0.000000 +ZZZ Create near-nullspace | 1 0.010000 0.010000 +ZZZ FunctionSpace | 1 0.000000 0.000000 +ZZZ Solve | 1 0.460000 0.460000 +*** Number of Krylov iterations: 18 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** @@ -2325,17 +2361,17 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:20:34 2025 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Sat Mar 28 11:49:22 2026 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total -Time (sec): 1.773e+01 1.000 1.772e+01 +Time (sec): 8.391e+00 1.000 8.391e+00 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 2.164e+08 1.021 2.135e+08 6.404e+08 -Flops/sec: 1.221e+07 1.021 1.205e+07 3.614e+07 -MPI Msg Count: 8.080e+02 1.041 7.870e+02 2.361e+03 -MPI Msg Len (bytes): 7.313e+06 1.341 8.137e+03 1.921e+07 -MPI Reductions: 4.630e+02 1.000 +Flops: 2.214e+08 1.104 2.113e+08 6.338e+08 +Flops/sec: 2.638e+07 1.104 2.518e+07 7.553e+07 +MPI Msg Count: 7.820e+02 1.043 7.610e+02 2.283e+03 +MPI Msg Len (bytes): 7.514e+06 1.371 8.107e+03 1.851e+07 +MPI Reductions: 4.590e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops @@ -2343,7 +2379,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 1.7720e+01 100.0% 6.4041e+08 100.0% 2.361e+03 100.0% 8.137e+03 100.0% 4.450e+02 96.1% + 0: Main Stage: 8.3912e+00 100.0% 6.3381e+08 100.0% 2.283e+03 100.0% 8.107e+03 100.0% 4.410e+02 96.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -2367,81 +2403,81 @@ --- Event Stage 0: Main Stage -BuildTwoSided 109 1.0 4.9097e-01 4.1 0.00e+00 0.0 1.8e+02 4.0e+00 1.1e+02 2 0 8 0 24 2 0 8 0 24 0 -BuildTwoSidedF 83 1.0 4.7253e-01 4.8 0.00e+00 0.0 1.1e+02 5.5e+04 8.3e+01 2 0 4 31 18 2 0 4 31 19 0 -MatMult 199 1.0 1.1565e+00 1.0 1.17e+08 1.0 1.2e+03 5.8e+03 0.0e+00 6 54 51 36 0 6 54 51 36 0 300 -MatMultAdd 40 1.0 1.5110e-01 1.2 9.84e+06 1.0 1.6e+02 1.6e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 191 -MatMultTranspose 40 1.0 1.9276e-01 1.2 9.85e+06 1.0 1.6e+02 1.6e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 150 -MatSolve 20 0.0 5.1121e-03 0.0 1.70e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 333 -MatLUFactorSym 1 1.0 3.3444e-03 141.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatLUFactorNum 1 1.0 1.7348e-02 3973.4 5.42e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 313 -MatScale 6 1.0 1.0193e-02 5.4 5.94e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 171 -MatResidual 40 1.0 2.4838e-01 1.0 2.28e+07 1.0 2.4e+02 5.5e+03 0.0e+00 1 11 10 7 0 1 11 10 7 0 271 -MatAssemblyBegin 45 1.0 4.9070e-01 3.5 0.00e+00 0.0 1.1e+02 5.5e+04 2.3e+01 2 0 4 31 5 2 0 4 31 5 0 -MatAssemblyEnd 45 1.0 2.6614e-01 1.1 7.75e+04 1.2 1.7e+02 5.1e+02 9.0e+01 1 0 7 0 19 1 0 7 0 20 1 -MatGetRowIJ 1 0.0 1.1410e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 1 1.0 6.3032e-02 1.0 0.00e+00 0.0 4.0e+00 3.7e+02 1.5e+01 0 0 0 0 3 0 0 0 0 3 0 -MatGetOrdering 1 0.0 2.3133e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 4.7896e-03 1.0 0.00e+00 0.0 1.2e+02 8.2e+02 3.8e+01 0 0 5 1 8 0 0 5 1 9 0 -MatZeroEntries 2 1.0 1.2639e-02 38.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 1.9778e-02 12.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -MatAXPY 4 1.0 9.7262e-02 1.3 1.16e+05 1.0 2.4e+01 4.1e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 4 -MatTranspose 9 1.0 2.3959e-02 2.2 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 4 1 6 0 0 4 1 6 0 -MatMatMultSym 6 1.0 1.8367e-01 1.1 0.00e+00 0.0 6.0e+01 1.1e+04 2.0e+01 1 0 3 3 4 1 0 3 3 4 0 -MatMatMultNum 2 1.0 5.2259e-02 1.5 6.83e+06 1.0 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 386 -MatPtAPSymbolic 2 1.0 6.4700e-01 1.0 0.00e+00 0.0 6.0e+01 6.1e+04 1.4e+01 4 0 3 19 3 4 0 3 19 3 0 -MatPtAPNumeric 2 1.0 6.8538e-01 1.0 5.99e+07 1.1 2.8e+01 1.2e+05 1.2e+01 4 27 1 17 3 4 27 1 17 3 248 -MatTrnMatMultSym 1 1.0 1.1746e-01 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 -MatGetLocalMat 7 1.0 2.3488e-02 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 6 1.0 1.8940e-02 1.0 0.00e+00 0.0 8.4e+01 4.6e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 -MatCreateGraph 2 1.0 2.0079e-01 1.0 1.52e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 2 -VecMDot 20 1.0 5.8210e-02 1.2 1.21e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 61 -VecTDot 40 1.0 1.5349e-01 1.3 8.16e+05 1.0 0.0e+00 0.0e+00 4.0e+01 1 0 0 0 9 1 0 0 0 9 16 -VecNorm 42 1.0 1.3153e-01 1.0 6.50e+05 1.0 0.0e+00 0.0e+00 4.2e+01 1 0 0 0 9 1 0 0 0 9 15 -VecScale 22 1.0 3.7321e-04 3.0 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 959 -VecCopy 124 1.0 1.8398e-03 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 141 1.0 1.1134e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 40 1.0 2.1809e-03 1.7 7.97e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1075 -VecAYPX 258 1.0 7.1761e-03 1.5 2.12e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 876 -VecAXPBYCZ 80 1.0 2.6799e-03 1.3 2.20e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2428 -VecMAXPY 22 1.0 9.1051e-03 11.4 1.43e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 464 -VecAssemblyBegin 61 1.0 3.7485e-02 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 -VecAssemblyEnd 61 1.0 8.2234e-03 69.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecPointwiseMult 182 1.0 6.9874e-03 1.2 1.00e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 424 -VecScatterBegin 343 1.0 1.7784e-02 1.7 0.00e+00 0.0 1.8e+03 4.6e+03 0.0e+00 0 0 76 43 0 0 0 76 43 0 0 -VecScatterEnd 343 1.0 9.8372e-01 1.1 1.24e+04 1.5 0.0e+00 0.0e+00 0.0e+00 5 0 0 0 0 5 0 0 0 0 0 -VecNormalize 22 1.0 4.5353e-02 1.1 3.63e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 24 -SFSetGraph 26 1.0 3.3949e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 26 1.0 2.9405e-02 1.4 0.00e+00 0.0 2.5e+02 4.9e+02 2.6e+01 0 0 11 1 6 0 0 11 1 6 0 -SFBcastBegin 10 1.0 1.3157e-04 1.2 0.00e+00 0.0 6.0e+01 1.4e+03 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 -SFBcastEnd 10 1.0 1.2026e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFReduceBegin 3 1.0 1.0222e-04 1.0 0.00e+00 0.0 1.5e+01 6.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 -SFReduceEnd 3 1.0 6.4691e-05 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFPack 356 1.0 2.7824e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 356 1.0 9.2442e-04 1.2 1.24e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 34 -KSPSetUp 1 1.0 2.2721e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 1.6691e+00 1.0 1.35e+08 1.0 1.4e+03 4.9e+03 8.0e+01 9 62 59 35 17 9 62 59 35 18 239 -KSPGMRESOrthog 20 1.0 6.4603e-02 1.3 2.42e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 111 -PCSetUp_GAMG+ 1 1.0 2.1502e+00 1.0 8.18e+07 1.1 9.0e+02 1.3e+04 3.1e+02 12 37 38 59 67 12 37 38 59 70 109 - PCGAMGCreateG 2 1.0 2.0084e-01 1.0 1.52e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 2 - GAMG Coarsen 4 1.0 1.2516e-01 1.0 0.00e+00 0.0 2.0e+02 7.8e+03 5.5e+01 1 0 8 8 12 1 0 8 8 12 0 - GAMG MIS/Agg 2 1.0 1.2257e-01 1.0 0.00e+00 0.0 1.6e+02 8.4e+03 5.1e+01 1 0 7 7 11 1 0 7 7 11 0 - PCGAMGProl 2 1.0 6.4806e-02 1.0 0.00e+00 0.0 2.6e+02 3.2e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 - GAMG Prol-col 2 1.0 5.3297e-02 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 13 0 - GAMG Prol-lift 2 1.0 1.1018e-02 1.0 0.00e+00 0.0 3.6e+01 6.8e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 - PCGAMGOptProl 2 1.0 3.6723e-01 1.0 2.17e+07 1.0 1.9e+02 8.8e+03 6.6e+01 2 10 8 9 14 2 10 8 9 15 175 - GAMG smooth 2 1.0 1.7558e-01 1.1 7.38e+06 1.0 7.2e+01 1.4e+04 2.4e+01 1 3 3 5 5 1 3 3 5 5 124 - PCGAMGCreateL 2 1.0 1.4003e+00 1.0 5.99e+07 1.1 1.1e+02 6.5e+04 6.0e+01 8 27 5 36 13 8 27 5 36 13 121 - GAMG PtAP 2 1.0 1.3262e+00 1.0 5.99e+07 1.1 8.8e+01 7.9e+04 2.6e+01 7 27 4 36 6 7 27 4 36 6 128 - GAMG Reduce 1 1.0 6.2527e-01 1.0 2.00e+07 1.3 4.7e+01 5.0e+04 4.7e+01 3 9 2 12 10 3 9 2 12 11 87 -PCGAMG Squ l00 1 1.0 1.1747e-01 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 -PCGAMG Gal l00 1 1.0 7.7619e-01 1.0 4.07e+07 1.1 6.0e+01 7.7e+04 1.3e+01 4 18 3 24 3 4 18 3 24 3 149 -PCGAMG Opt l00 1 1.0 8.0373e-02 1.1 5.06e+06 1.0 3.6e+01 2.2e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 187 -PCGAMG Gal l01 1 1.0 5.5019e-01 1.0 2.00e+07 1.3 2.8e+01 8.3e+04 1.3e+01 3 9 1 12 3 3 9 1 12 3 99 -PCGAMG Opt l01 1 1.0 7.5124e-02 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2.3004e-02 1.0 0.00e+00 0.0 1.6e+02 8.1e+03 5.1e+01 0 0 7 7 11 0 0 7 7 12 0 + PCGAMGProl 2 1.0 8.5169e-03 1.0 0.00e+00 0.0 2.6e+02 3.0e+03 7.6e+01 0 0 11 4 17 0 0 11 4 17 0 + GAMG Prol-col 2 1.0 3.1333e-03 1.0 0.00e+00 0.0 2.2e+02 2.5e+03 5.6e+01 0 0 10 3 12 0 0 10 3 13 0 + GAMG Prol-lift 2 1.0 5.1161e-03 1.0 0.00e+00 0.0 3.6e+01 6.1e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 + PCGAMGOptProl 2 1.0 3.6165e-02 1.0 2.28e+07 1.1 1.9e+02 8.5e+03 6.6e+01 0 10 8 9 14 0 10 8 9 15 1802 + GAMG smooth 2 1.0 2.6647e-02 1.0 7.77e+06 1.1 7.2e+01 1.4e+04 2.4e+01 0 3 3 5 5 0 3 3 5 5 829 + PCGAMGCreateL 2 1.0 3.0547e-01 1.0 6.54e+07 1.2 1.1e+02 6.5e+04 6.0e+01 4 28 5 38 13 4 28 5 38 14 580 + GAMG PtAP 2 1.0 3.0267e-01 1.0 6.54e+07 1.2 8.8e+01 7.9e+04 2.6e+01 4 28 4 38 6 4 28 4 38 6 585 + GAMG Reduce 1 1.0 1.1347e-01 1.0 2.55e+07 1.6 4.7e+01 5.1e+04 4.7e+01 1 9 2 13 10 1 9 2 13 11 517 +PCGAMG Squ l00 1 1.0 2.1897e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 +PCGAMG Gal l00 1 1.0 1.9203e-01 1.0 3.99e+07 1.0 6.0e+01 7.7e+04 1.3e+01 2 19 3 25 3 2 19 3 25 3 616 +PCGAMG Opt l00 1 1.0 1.8318e-02 1.0 5.03e+06 1.0 3.6e+01 2.1e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 820 +PCGAMG Gal l01 1 1.0 1.1071e-01 1.0 2.55e+07 1.6 2.8e+01 8.5e+04 1.3e+01 1 9 1 13 3 1 9 1 13 3 530 +PCGAMG Opt l01 1 1.0 5.4255e-03 1.0 2.18e+06 1.4 3.6e+01 6.9e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 999 +PCSetUp 1 1.0 3.8858e-01 1.0 8.83e+07 1.2 9.0e+02 1.2e+04 3.1e+02 5 38 39 60 68 5 38 39 60 70 625 +PCSetUpOnBlocks 19 1.0 4.7037e-03 30.2 6.28e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1335 +PCApply 19 1.0 6.1409e-02 1.0 1.15e+08 1.1 1.2e+03 4.4e+03 1.9e+01 1 53 53 29 4 1 53 53 29 4 5439 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -2464,9 +2500,9 @@ Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== -Average time to get PetscTime(): 7.748e-07 -Average time for MPI_Barrier(): 6.1604e-06 -Average time for zero size MPI_Send(): 4.435e-06 +Average time to get PetscTime(): 4.49e-08 +Average time for MPI_Barrier(): 1.8802e-06 +Average time for zero size MPI_Send(): 1.423e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) @@ -2530,67 +2566,67 @@ Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== elasticity strong scaling (3 processes with ndofs=30000) ==== -[2025-02-22 03:20:36.389] [RANK: 0] [info] Using partitioner with 69312 cell data -[2025-02-22 03:20:36.390] [RANK: 0] [info] Compute partition of cells across ranks -[2025-02-22 03:20:36.390] [RANK: 0] [info] Building mesh dual graph -[2025-02-22 03:20:36.390] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2025-02-22 03:20:36.464] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2025-02-22 03:20:36.475] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:36.477] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:36.478] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2025-02-22 03:20:36.479] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) -[2025-02-22 03:20:36.479] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2025-02-22 03:20:49.458] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2025-02-22 03:20:49.504] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2025-02-22 03:20:49.567] [RANK: 0] [info] Extract basic topology: 68440->68440 -[2025-02-22 03:20:49.567] [RANK: 0] [info] Build local dual graph -[2025-02-22 03:20:49.567] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2025-02-22 03:20:49.660] [RANK: 0] [info] GPS pseudo-diameter:(119) 16615-1177 -[2025-02-22 03:20:49.673] [RANK: 0] [info] Create topology (single cell type) -[2025-02-22 03:20:49.673] [RANK: 0] [info] Create topology (generalised) -[2025-02-22 03:20:49.684] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2025-02-22 03:20:49.696] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2025-02-22 03:20:49.758] [RANK: 0] [info] Compute ghost indices -[2025-02-22 03:20:49.758] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2025-02-22 03:20:49.764] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2025-02-22 03:20:49.798] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2025-02-22 03:20:49.800] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2025-02-22 03:20:49.910] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:49.924] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:49.936] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:49.952] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:49.986] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2025-02-22 03:20:49.989] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2025-02-22 03:20:49.989] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2025-02-22 03:20:50.009] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:50.032] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:50.032] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2025-02-22 03:20:50.101] [RANK: 0] [info] Checking required entities per dimension -[2025-02-22 03:20:50.101] [RANK: 0] [info] Cell type: 0 dofmap: 17110x4 -[2025-02-22 03:20:50.110] [RANK: 0] [info] Global index computation -[2025-02-22 03:20:50.111] [RANK: 0] [info] Got 1 index_maps -[2025-02-22 03:20:50.111] [RANK: 0] [info] Get global indices -[2025-02-22 03:20:50.160] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:50.176] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:22.937] [RANK: 0] [info] Using partitioner with 69312 cell data +[2026-03-28 11:49:22.938] [RANK: 0] [info] Compute partition of cells across ranks +[2026-03-28 11:49:22.938] [RANK: 0] [info] Building mesh dual graph +[2026-03-28 11:49:22.938] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2026-03-28 11:49:22.951] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2026-03-28 11:49:22.952] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:22.952] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:22.952] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2026-03-28 11:49:22.953] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) +[2026-03-28 11:49:22.953] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2026-03-28 11:49:30.688] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2026-03-28 11:49:30.688] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2026-03-28 11:49:30.691] [RANK: 0] [info] Extract basic topology: 69496->69496 +[2026-03-28 11:49:30.691] [RANK: 0] [info] Build local dual graph +[2026-03-28 11:49:30.691] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2026-03-28 11:49:30.711] [RANK: 0] [info] GPS pseudo-diameter:(118) 1167-16893 +[2026-03-28 11:49:30.714] [RANK: 0] [info] Create topology (single cell type) +[2026-03-28 11:49:30.714] [RANK: 0] [info] Create topology (generalised) +[2026-03-28 11:49:30.715] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2026-03-28 11:49:30.715] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2026-03-28 11:49:30.720] [RANK: 0] [info] Compute ghost indices +[2026-03-28 11:49:30.720] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2026-03-28 11:49:30.720] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2026-03-28 11:49:30.722] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2026-03-28 11:49:30.722] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2026-03-28 11:49:30.726] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:30.726] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:30.727] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:30.727] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:30.728] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2026-03-28 11:49:30.728] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2026-03-28 11:49:30.728] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2026-03-28 11:49:30.728] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:30.728] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:30.728] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2026-03-28 11:49:30.728] [RANK: 0] [info] Checking required entities per dimension +[2026-03-28 11:49:30.729] [RANK: 0] [info] Cell type: 0 dofmap: 17374x4 +[2026-03-28 11:49:30.730] [RANK: 0] [info] Global index computation +[2026-03-28 11:49:30.730] [RANK: 0] [info] Got 1 index_maps +[2026-03-28 11:49:30.730] [RANK: 0] [info] Get global indices +[2026-03-28 11:49:30.730] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:30.730] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times -[2025-02-22 03:20:50.209] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2025-02-22 03:20:50.235] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:50.268] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:50.447] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:50.461] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:50.478] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2025-02-22 03:20:50.478] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2025-02-22 03:20:50.479] [RANK: 0] [info] Checking required entities per dimension -[2025-02-22 03:20:50.479] [RANK: 0] [info] Cell type: 0 dofmap: 17110x4 -[2025-02-22 03:20:50.482] [RANK: 0] [info] Global index computation -[2025-02-22 03:20:50.483] [RANK: 0] [info] Got 1 index_maps -[2025-02-22 03:20:50.483] [RANK: 0] [info] Get global indices -[2025-02-22 03:20:50.531] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:50.544] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:50.617] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2025-02-22 03:20:50.617] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2025-02-22 03:20:50.617] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2025-02-22 03:20:50.814] [RANK: 0] [info] Column ghost size increased from 226 to 565 +[2026-03-28 11:49:30.731] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2026-03-28 11:49:30.743] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:30.743] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:30.791] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:30.791] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:30.792] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2026-03-28 11:49:30.792] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2026-03-28 11:49:30.792] [RANK: 0] [info] Checking required entities per dimension +[2026-03-28 11:49:30.792] [RANK: 0] [info] Cell type: 0 dofmap: 17374x4 +[2026-03-28 11:49:30.794] [RANK: 0] [info] Global index computation +[2026-03-28 11:49:30.794] [RANK: 0] [info] Got 1 index_maps +[2026-03-28 11:49:30.794] [RANK: 0] [info] Get global indices +[2026-03-28 11:49:30.794] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:30.794] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:30.794] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2026-03-28 11:49:30.794] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2026-03-28 11:49:30.794] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2026-03-28 11:49:30.806] [RANK: 0] [info] Column ghost size increased from 215 to 567 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -2604,7 +2640,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -[2025-02-22 03:20:51.352] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2026-03-28 11:49:30.892] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -2625,11 +2661,11 @@ MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 - Complexity: grid = 1.0928 operator = 1.37906 + Complexity: grid = 1.094 operator = 1.38723 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int - 222 1 175 0 - 2562 3 171 36 + 234 1 194 0 + 2586 3 170 39 30000 3 42 22 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes @@ -2655,35 +2691,35 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.09116 + factor fill ratio given 5., needed 1.10501 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=222, cols=222, bs=6 + rows=234, cols=234, bs=6 package used to perform factorization: petsc - total: nonzeros=42228, allocated nonzeros=42228 - using I-node routines: found 62 nodes, limit used is 5 + total: nonzeros=50004, allocated nonzeros=50004 + using I-node routines: found 60 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=222, cols=222, bs=6 - total: nonzeros=38700, allocated nonzeros=38700 + rows=234, cols=234, bs=6 + total: nonzeros=45252, allocated nonzeros=45252 total number of mallocs used during MatSetValues calls=0 - using I-node routines: found 73 nodes, limit used is 5 + using I-node routines: found 75 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=222, cols=222, bs=6 - total: nonzeros=38700, allocated nonzeros=38700 + rows=234, cols=234, bs=6 + total: nonzeros=45252, allocated nonzeros=45252 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 73 nodes, limit used is 5 + using I-node (on process 0) routines: found 75 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.25788, max 2.83668 - eigenvalues provided (min 0.0550126, max 2.5788) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.260119, max 2.86131 + eigenvalues provided (min 0.0457575, max 2.60119) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2694,18 +2730,18 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=2562, cols=2562, bs=6 - total: nonzeros=435708, allocated nonzeros=435708 + rows=2586, cols=2586, bs=6 + total: nonzeros=439380, allocated nonzeros=439380 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 266 nodes, limit used is 5 + using I-node (on process 0) routines: found 264 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.257083, max 2.82791 - eigenvalues provided (min 0.0723455, max 2.57083) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.258674, max 2.84542 + eigenvalues provided (min 0.0716515, max 2.58674) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2720,7 +2756,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3345 nodes, limit used is 5 + using I-node (on process 0) routines: found 3395 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -2729,46 +2765,46 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3345 nodes, limit used is 5 + using I-node (on process 0) routines: found 3395 nodes, limit used is 5 -[MPI_MAX] Summary of timings | reps wall avg wall tot ---------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 13.830000 13.830000 -Build dofmap data | 2 0.100000 0.200000 -Build sparsity | 1 0.030000 0.030000 -Compute connectivity 2-0 | 1 0.000000 0.000000 -Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.270000 0.270000 -Compute graph partition (SCOTCH) | 1 13.000000 13.000000 -Compute local part of mesh dual graph (mixed) | 2 0.080000 0.160000 -Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.080000 0.080000 -Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.110000 0.110000 -Distribute row-wise data (scalable) | 1 0.120000 0.120000 -GPS: create_level_structure | 2 0.005000 0.010000 -Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 -Init MPI | 1 0.560000 0.560000 -Init PETSc | 1 0.010000 0.010000 -Init dofmap from element dofmap | 2 0.005000 0.010000 -Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 2.490000 2.490000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 13.000000 13.000000 -SparsityPattern::finalize | 1 0.050000 0.050000 -Topology: create | 1 0.310000 0.310000 -Topology: determine shared index ownership | 1 0.080000 0.080000 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 -ZZZ Assemble matrix | 1 0.430000 0.430000 -ZZZ Assemble vector | 1 0.030000 0.030000 -ZZZ Create Mesh | 1 13.830000 13.830000 -ZZZ Create RHS function | 1 0.100000 0.100000 -ZZZ Create boundary conditions | 1 0.090000 0.090000 -ZZZ Create facets and facet->cell connectivity | 1 0.270000 0.270000 -ZZZ Create forms | 1 0.000000 0.000000 -ZZZ Create near-nullspace | 1 0.020000 0.020000 -ZZZ FunctionSpace | 1 0.100000 0.100000 -ZZZ Solve | 1 2.500000 2.500000 +[MPI_MAX] Summary of timings | reps wall avg wall tot +------------------------------------------------------------------------------------------------------- +Build BoxMesh (tetrahedra) | 1 7.800000 7.800000 +Build dofmap data | 2 0.000000 0.000000 +Build sparsity | 1 0.000000 0.000000 +Compute connectivity 2-0 | 1 0.000000 0.000000 +Compute dof reordering map | 2 0.000000 0.000000 +Compute entities of dim = 2 | 1 0.060000 0.060000 +Compute graph partition (SCOTCH) | 1 7.730000 7.730000 +Compute local part of mesh dual graph (mixed) | 2 0.020000 0.040000 +Compute local-to-local map | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.010000 0.010000 +Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.010000 0.010000 +Distribute row-wise data (scalable) | 1 0.000000 0.000000 +GPS: create_level_structure | 4 0.005000 0.010000 +Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 +Init MPI | 1 0.190000 0.190000 +Init PETSc | 1 0.000000 0.000000 +Init dofmap from element dofmap | 2 0.000000 0.000000 +Init logging | 1 0.000000 0.000000 +PETSc Krylov solver | 1 0.450000 0.450000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 +SCOTCH: call SCOTCH_dgraphPart | 1 7.730000 7.730000 +SparsityPattern::finalize | 1 0.010000 0.010000 +Topology: create | 1 0.020000 0.020000 +Topology: determine shared index ownership | 1 0.010000 0.010000 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 +ZZZ Assemble matrix | 1 0.070000 0.070000 +ZZZ Assemble vector | 1 0.010000 0.010000 +ZZZ Create Mesh | 1 7.800000 7.800000 +ZZZ Create RHS function | 1 0.000000 0.000000 +ZZZ Create boundary conditions | 1 0.000000 0.000000 +ZZZ Create facets and facet->cell connectivity | 1 0.060000 0.060000 +ZZZ Create forms | 1 0.000000 0.000000 +ZZZ Create near-nullspace | 1 0.000000 0.000000 +ZZZ FunctionSpace | 1 0.000000 0.000000 +ZZZ Solve | 1 0.460000 0.460000 *** Number of Krylov iterations: 19 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** @@ -2777,17 +2813,17 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:20:53 2025 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Sat Mar 28 11:49:31 2026 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total -Time (sec): 1.747e+01 1.000 1.746e+01 +Time (sec): 8.411e+00 1.000 8.411e+00 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 2.270e+08 1.103 2.139e+08 6.418e+08 -Flops/sec: 1.300e+07 1.104 1.225e+07 3.675e+07 -MPI Msg Count: 8.040e+02 1.043 7.823e+02 2.347e+03 -MPI Msg Len (bytes): 7.929e+06 1.455 8.193e+03 1.923e+07 -MPI Reductions: 4.620e+02 1.000 +Flops: 2.257e+08 1.076 2.168e+08 6.504e+08 +Flops/sec: 2.684e+07 1.076 2.578e+07 7.733e+07 +MPI Msg Count: 8.060e+02 1.043 7.843e+02 2.353e+03 +MPI Msg Len (bytes): 7.258e+06 1.268 8.091e+03 1.904e+07 +MPI Reductions: 4.630e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops @@ -2795,7 +2831,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 1.7464e+01 100.0% 6.4176e+08 100.0% 2.347e+03 100.0% 8.193e+03 100.0% 4.440e+02 96.1% + 0: Main Stage: 8.4106e+00 100.0% 6.5043e+08 100.0% 2.353e+03 100.0% 8.091e+03 100.0% 4.450e+02 96.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -2819,81 +2855,81 @@ --- Event Stage 0: Main Stage -BuildTwoSided 109 1.0 2.8795e-01 1.9 0.00e+00 0.0 1.8e+02 4.0e+00 1.1e+02 1 0 7 0 24 1 0 7 0 25 0 -BuildTwoSidedF 83 1.0 2.8801e-01 1.9 0.00e+00 0.0 9.8e+01 6.0e+04 8.3e+01 1 0 4 31 18 1 0 4 31 19 0 -MatMult 199 1.0 7.7451e-01 1.0 1.24e+08 1.1 1.2e+03 5.8e+03 0.0e+00 4 54 51 36 0 4 54 51 36 0 449 -MatMultAdd 40 1.0 6.5573e-02 1.1 9.96e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 442 -MatMultTranspose 40 1.0 8.2111e-02 1.2 9.98e+06 1.0 1.6e+02 1.6e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 354 -MatSolve 20 0.0 3.2926e-03 0.0 1.68e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 512 -MatLUFactorSym 1 1.0 6.8091e-03 245.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatLUFactorNum 1 1.0 4.9271e-03 0.0 5.13e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1041 -MatScale 6 1.0 1.7698e-03 1.0 6.02e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 990 -MatResidual 40 1.0 1.5977e-01 1.1 2.42e+07 1.1 2.4e+02 5.5e+03 0.0e+00 1 11 10 7 0 1 11 10 7 0 422 -MatAssemblyBegin 45 1.0 2.9273e-01 1.7 0.00e+00 0.0 9.8e+01 6.0e+04 2.3e+01 1 0 4 31 5 1 0 4 31 5 0 -MatAssemblyEnd 45 1.0 1.3781e-01 1.2 9.68e+04 2.0 1.7e+02 5.2e+02 9.0e+01 1 0 7 0 19 1 0 7 0 20 2 -MatGetRowIJ 1 0.0 4.8704e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 1 1.0 2.1605e-02 1.0 0.00e+00 0.0 4.0e+00 3.4e+02 1.5e+01 0 0 0 0 3 0 0 0 0 3 0 -MatGetOrdering 1 0.0 1.7221e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 3.9010e-02 1.0 0.00e+00 0.0 1.2e+02 8.5e+02 3.7e+01 0 0 5 1 8 0 0 5 1 8 0 -MatZeroEntries 2 1.0 5.4245e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 3.9925e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -MatAXPY 4 1.0 4.6699e-02 1.1 1.18e+05 1.0 2.4e+01 4.1e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 7 -MatTranspose 9 1.0 3.1360e-02 1.2 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 4 1 6 0 0 4 1 6 0 -MatMatMultSym 6 1.0 1.3790e-01 1.3 0.00e+00 0.0 6.0e+01 1.1e+04 2.0e+01 1 0 3 3 4 1 0 3 3 5 0 -MatMatMultNum 2 1.0 3.9731e-02 1.1 7.26e+06 1.1 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 510 -MatPtAPSymbolic 2 1.0 4.0013e-01 1.0 0.00e+00 0.0 6.0e+01 6.0e+04 1.4e+01 2 0 3 19 3 2 0 3 19 3 0 -MatPtAPNumeric 2 1.0 4.4330e-01 1.0 6.31e+07 1.2 2.8e+01 1.2e+05 1.2e+01 3 27 1 17 3 3 27 1 17 3 384 -MatTrnMatMultSym 1 1.0 1.1754e-01 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 -MatGetLocalMat 7 1.0 9.4871e-03 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 6 1.0 2.2713e-02 1.6 0.00e+00 0.0 8.4e+01 4.5e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 -MatCreateGraph 2 1.0 1.2135e-01 1.0 1.56e+05 1.0 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 11 1 0 6 1 11 4 -VecMDot 20 1.0 3.9715e-02 1.2 1.20e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 5 90 -VecTDot 40 1.0 4.6564e-02 1.5 8.03e+05 1.0 0.0e+00 0.0e+00 4.0e+01 0 0 0 0 9 0 0 0 0 9 52 -VecNorm 42 1.0 7.2592e-02 1.6 6.40e+05 1.0 0.0e+00 0.0e+00 4.2e+01 0 0 0 0 9 0 0 0 0 9 26 -VecScale 22 1.0 2.8881e-04 1.2 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1240 -VecCopy 124 1.0 1.4433e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 141 1.0 6.8906e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 40 1.0 1.5792e-03 1.1 7.84e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1485 -VecAYPX 258 1.0 8.7055e-03 1.6 2.11e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 723 -VecAXPBYCZ 80 1.0 1.0687e-02 6.0 2.19e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 609 -VecMAXPY 22 1.0 1.0494e-03 1.4 1.42e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4034 -VecAssemblyBegin 61 1.0 3.6358e-02 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 14 0 -VecAssemblyEnd 61 1.0 2.0717e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecPointwiseMult 182 1.0 1.2331e-02 2.9 9.96e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 240 -VecScatterBegin 343 1.0 9.4239e-03 1.1 0.00e+00 0.0 1.8e+03 4.6e+03 0.0e+00 0 0 76 43 0 0 0 76 43 0 0 -VecScatterEnd 343 1.0 5.2222e-01 1.4 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0.00e+00 0.0 2.2e+02 2.5e+03 5.6e+01 0 0 10 3 12 0 0 10 3 13 0 + GAMG Prol-lift 2 1.0 5.1828e-03 1.0 0.00e+00 0.0 3.6e+01 6.3e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 + PCGAMGOptProl 2 1.0 3.5050e-02 1.0 2.27e+07 1.1 1.9e+02 8.6e+03 6.6e+01 0 10 8 9 14 0 10 8 9 15 1848 + GAMG smooth 2 1.0 2.5683e-02 1.0 7.74e+06 1.1 7.2e+01 1.4e+04 2.4e+01 0 3 3 5 5 0 3 3 5 5 855 + PCGAMGCreateL 2 1.0 2.9817e-01 1.0 6.32e+07 1.2 1.1e+02 6.6e+04 6.0e+01 4 27 5 37 13 4 27 5 37 13 589 + GAMG PtAP 2 1.0 2.9552e-01 1.0 6.32e+07 1.2 8.8e+01 8.0e+04 2.6e+01 4 27 4 37 6 4 27 4 37 6 595 + GAMG Reduce 1 1.0 1.0835e-01 1.0 2.38e+07 1.6 4.7e+01 5.3e+04 4.7e+01 1 9 2 13 10 1 9 2 13 11 542 +PCGAMG Squ l00 1 1.0 2.1363e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 +PCGAMG Gal l00 1 1.0 1.8988e-01 1.0 3.93e+07 1.0 6.0e+01 7.6e+04 1.3e+01 2 18 3 24 3 2 18 3 24 3 616 +PCGAMG Opt l00 1 1.0 1.7315e-02 1.0 5.06e+06 1.0 3.6e+01 2.1e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 867 +PCGAMG Gal l01 1 1.0 1.0570e-01 1.0 2.38e+07 1.6 2.8e+01 8.9e+04 1.3e+01 1 9 1 13 3 1 9 1 13 3 556 +PCGAMG Opt l01 1 1.0 5.1617e-03 1.0 2.11e+06 1.4 3.6e+01 6.7e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 1021 +PCSetUp 1 1.0 3.7940e-01 1.0 8.60e+07 1.1 9.0e+02 1.3e+04 3.1e+02 5 37 38 59 67 5 37 38 59 70 635 +PCSetUpOnBlocks 20 1.0 4.9741e-03 33.8 6.76e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1360 +PCApply 20 1.0 6.3042e-02 1.0 1.19e+08 1.1 1.3e+03 4.4e+03 2.0e+01 1 54 54 30 4 1 54 54 30 4 5545 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -2916,9 +2952,9 @@ Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== -Average time to get PetscTime(): 7.468e-07 -Average time for MPI_Barrier(): 1.8984e-06 -Average time for zero size MPI_Send(): 3.10233e-06 +Average time to get PetscTime(): 4.64e-08 +Average time for MPI_Barrier(): 2.465e-06 +Average time for zero size MPI_Send(): 1.164e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) @@ -2982,69 +3018,69 @@ Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== poisson weak scaling (3 processes with ndofs=10000) ==== -[2025-02-22 03:20:55.200] [RANK: 0] [info] Using partitioner with 216000 cell data -[2025-02-22 03:20:55.212] [RANK: 0] [info] Compute partition of cells across ranks -[2025-02-22 03:20:55.212] [RANK: 0] [info] Building mesh dual graph -[2025-02-22 03:20:55.212] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2025-02-22 03:20:55.418] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2025-02-22 03:20:55.436] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:20:55.464] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:20:55.464] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2025-02-22 03:20:55.478] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) -[2025-02-22 03:20:55.478] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2025-02-22 03:21:12.498] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2025-02-22 03:21:12.520] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2025-02-22 03:21:12.591] [RANK: 0] [info] Extract basic topology: 212928->212928 -[2025-02-22 03:21:12.592] [RANK: 0] [info] Build local dual graph -[2025-02-22 03:21:12.592] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2025-02-22 03:21:12.711] [RANK: 0] [info] GPS pseudo-diameter:(169) 1857-51524 -[2025-02-22 03:21:12.737] [RANK: 0] [info] Create topology (single cell type) -[2025-02-22 03:21:12.737] [RANK: 0] [info] Create topology (generalised) -[2025-02-22 03:21:12.870] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2025-02-22 03:21:12.876] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2025-02-22 03:21:12.897] [RANK: 0] [info] Compute ghost indices -[2025-02-22 03:21:12.897] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2025-02-22 03:21:12.924] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2025-02-22 03:21:12.935] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2025-02-22 03:21:12.935] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2025-02-22 03:21:12.981] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:12.988] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:12.989] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:12.989] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:13.017] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2025-02-22 03:21:13.025] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2025-02-22 03:21:13.025] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2025-02-22 03:21:13.045] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:13.046] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:13.046] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2025-02-22 03:21:13.047] [RANK: 0] [info] Checking required entities per dimension -[2025-02-22 03:21:13.048] [RANK: 0] [info] Cell type: 0 dofmap: 53232x4 -[2025-02-22 03:21:13.074] [RANK: 0] [info] Global index computation -[2025-02-22 03:21:13.074] [RANK: 0] [info] Got 1 index_maps -[2025-02-22 03:21:13.076] [RANK: 0] [info] Get global indices -[2025-02-22 03:21:13.081] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:13.081] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:31.780] [RANK: 0] [info] Using partitioner with 216000 cell data +[2026-03-28 11:49:31.782] [RANK: 0] [info] Compute partition of cells across ranks +[2026-03-28 11:49:31.782] [RANK: 0] [info] Building mesh dual graph +[2026-03-28 11:49:31.782] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2026-03-28 11:49:31.842] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2026-03-28 11:49:31.845] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:31.845] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:31.845] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2026-03-28 11:49:31.848] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) +[2026-03-28 11:49:31.848] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2026-03-28 11:49:45.270] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2026-03-28 11:49:45.280] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2026-03-28 11:49:45.284] [RANK: 0] [info] Extract basic topology: 212772->212772 +[2026-03-28 11:49:45.285] [RANK: 0] [info] Build local dual graph +[2026-03-28 11:49:45.285] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2026-03-28 11:49:45.326] [RANK: 0] [info] GPS pseudo-diameter:(162) 834-51709 +[2026-03-28 11:49:45.333] [RANK: 0] [info] Create topology (single cell type) +[2026-03-28 11:49:45.333] [RANK: 0] [info] Create topology (generalised) +[2026-03-28 11:49:45.368] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2026-03-28 11:49:45.368] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2026-03-28 11:49:45.381] [RANK: 0] [info] Compute ghost indices +[2026-03-28 11:49:45.381] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2026-03-28 11:49:45.385] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2026-03-28 11:49:45.389] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2026-03-28 11:49:45.390] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2026-03-28 11:49:45.404] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:45.409] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:45.409] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:45.409] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:45.417] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2026-03-28 11:49:45.417] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2026-03-28 11:49:45.417] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2026-03-28 11:49:45.417] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:45.418] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:45.418] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2026-03-28 11:49:45.418] [RANK: 0] [info] Checking required entities per dimension +[2026-03-28 11:49:45.419] [RANK: 0] [info] Cell type: 0 dofmap: 53193x4 +[2026-03-28 11:49:45.423] [RANK: 0] [info] Global index computation +[2026-03-28 11:49:45.423] [RANK: 0] [info] Got 1 index_maps +[2026-03-28 11:49:45.423] [RANK: 0] [info] Get global indices +[2026-03-28 11:49:45.428] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:45.428] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times -[2025-02-22 03:21:13.097] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2025-02-22 03:21:13.276] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:13.280] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:13.499] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:13.499] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:13.518] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2025-02-22 03:21:13.518] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2025-02-22 03:21:13.526] [RANK: 0] [info] Checking required entities per dimension -[2025-02-22 03:21:13.526] [RANK: 0] [info] Cell type: 0 dofmap: 53232x4 -[2025-02-22 03:21:13.549] [RANK: 0] [info] Global index computation -[2025-02-22 03:21:13.549] [RANK: 0] [info] Got 1 index_maps -[2025-02-22 03:21:13.550] [RANK: 0] [info] Get global indices -[2025-02-22 03:21:13.565] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:13.565] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:13.567] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2025-02-22 03:21:13.568] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2025-02-22 03:21:13.568] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2025-02-22 03:21:13.696] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2025-02-22 03:21:13.696] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) -[2025-02-22 03:21:13.803] [RANK: 0] [info] Column ghost size increased from 475 to 1281 +[2026-03-28 11:49:45.431] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2026-03-28 11:49:45.471] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:45.481] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:45.578] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:45.578] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:45.580] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2026-03-28 11:49:45.580] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2026-03-28 11:49:45.582] [RANK: 0] [info] Checking required entities per dimension +[2026-03-28 11:49:45.582] [RANK: 0] [info] Cell type: 0 dofmap: 53193x4 +[2026-03-28 11:49:45.586] [RANK: 0] [info] Global index computation +[2026-03-28 11:49:45.586] [RANK: 0] [info] Got 1 index_maps +[2026-03-28 11:49:45.587] [RANK: 0] [info] Get global indices +[2026-03-28 11:49:45.595] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:45.595] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:45.596] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2026-03-28 11:49:45.596] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2026-03-28 11:49:45.596] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2026-03-28 11:49:45.616] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2026-03-28 11:49:45.616] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) +[2026-03-28 11:49:45.654] [RANK: 0] [info] Column ghost size increased from 451 to 1224 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -3058,7 +3094,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -[2025-02-22 03:21:14.098] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2026-03-28 11:49:45.723] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -3104,41 +3140,41 @@ [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 17.910000 17.910000 -Build dofmap data | 2 0.045000 0.090000 -Build sparsity | 1 0.060000 0.060000 +Build BoxMesh (tetrahedra) | 1 13.660000 13.660000 +Build dofmap data | 2 0.015000 0.030000 +Build sparsity | 1 0.020000 0.020000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.420000 0.420000 -Compute graph partition (SCOTCH) | 1 16.990000 16.990000 -Compute local part of mesh dual graph (mixed) | 2 0.210000 0.420000 -Compute local-to-local map | 1 0.010000 0.010000 -Compute non-local part of mesh dual graph | 1 0.070000 0.070000 +Compute entities of dim = 2 | 1 0.140000 0.140000 +Compute graph partition (SCOTCH) | 1 13.430000 13.430000 +Compute local part of mesh dual graph (mixed) | 2 0.065000 0.130000 +Compute local-to-local map | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.140000 0.140000 -Distribute row-wise data (scalable) | 1 0.020000 0.020000 -GPS: create_level_structure | 5 0.002000 0.010000 -Gibbs-Poole-Stockmeyer ordering | 1 0.030000 0.030000 -Init MPI | 1 0.490000 0.490000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 +Distribute row-wise data (scalable) | 1 0.000000 0.000000 +GPS: create_level_structure | 4 0.000000 0.000000 +Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 +Init MPI | 1 0.040000 0.040000 Init PETSc | 1 0.000000 0.000000 -Init dofmap from element dofmap | 2 0.030000 0.060000 +Init dofmap from element dofmap | 2 0.010000 0.020000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 1.110000 1.110000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.020000 0.020000 -SCOTCH: call SCOTCH_dgraphPart | 1 16.970000 16.970000 -SparsityPattern::finalize | 1 0.070000 0.070000 -Topology: create | 1 0.250000 0.250000 -Topology: determine shared index ownership | 1 0.140000 0.140000 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.030000 0.030000 -ZZZ Assemble | 1 0.520000 0.520000 -ZZZ Assemble matrix | 1 0.250000 0.250000 -ZZZ Assemble vector | 1 0.030000 0.030000 -ZZZ Create Mesh | 1 17.910000 17.910000 -ZZZ Create RHS function | 1 0.110000 0.110000 -ZZZ Create boundary conditions | 1 0.020000 0.020000 -ZZZ Create facets and facet->cell connectivity | 1 0.420000 0.420000 -ZZZ FunctionSpace | 1 0.050000 0.050000 -ZZZ Solve | 1 1.130000 1.130000 +PETSc Krylov solver | 1 0.210000 0.210000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 +SCOTCH: call SCOTCH_dgraphPart | 1 13.430000 13.430000 +SparsityPattern::finalize | 1 0.030000 0.030000 +Topology: create | 1 0.070000 0.070000 +Topology: determine shared index ownership | 1 0.030000 0.030000 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 +ZZZ Assemble | 1 0.120000 0.120000 +ZZZ Assemble matrix | 1 0.050000 0.050000 +ZZZ Assemble vector | 1 0.000000 0.000000 +ZZZ Create Mesh | 1 13.660000 13.660000 +ZZZ Create RHS function | 1 0.040000 0.040000 +ZZZ Create boundary conditions | 1 0.000000 0.000000 +ZZZ Create facets and facet->cell connectivity | 1 0.150000 0.150000 +ZZZ FunctionSpace | 1 0.020000 0.020000 +ZZZ Solve | 1 0.220000 0.220000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -3147,16 +3183,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:21:15 2025 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Sat Mar 28 11:49:45 2026 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total -Time (sec): 2.002e+01 1.000 2.002e+01 +Time (sec): 1.416e+01 1.000 1.416e+01 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 3.529e+06 1.024 3.488e+06 1.046e+07 -Flops/sec: 1.763e+05 1.024 1.742e+05 5.227e+05 +Flops: 3.554e+06 1.031 3.489e+06 1.047e+07 +Flops/sec: 2.509e+05 1.031 2.464e+05 7.392e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 -MPI Msg Len (bytes): 1.985e+05 1.249 5.990e+03 5.391e+05 +MPI Msg Len (bytes): 1.872e+05 1.223 5.757e+03 5.181e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -3165,7 +3201,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 2.0021e+01 100.0% 1.0465e+07 100.0% 9.000e+01 100.0% 5.990e+03 100.0% 5.400e+01 75.0% + 0: Main Stage: 1.4161e+01 100.0% 1.0467e+07 100.0% 9.000e+01 100.0% 5.757e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3189,32 +3225,32 @@ --- Event Stage 0: Main Stage -BuildTwoSided 5 1.0 9.2423e-02 48.4 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 -BuildTwoSidedF 2 1.0 9.2392e-02 49.8 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatMult 7 1.0 1.5458e-02 2.1 1.93e+06 1.0 4.2e+01 5.7e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 371 -MatConvert 1 1.0 2.0081e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 -MatAssemblyBegin 5 1.0 9.5744e-02 7.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatAssemblyEnd 5 1.0 2.4597e-02 1.6 3.95e+03 1.3 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 0 -MatGetRowIJ 4 1.0 8.7270e-05 9.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 8.9449e-04 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 -MatSetPreallCOO 2 1.0 1.1621e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetValuesCOO 2 1.0 2.8984e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecTDot 16 1.0 9.0097e-03 10.2 3.21e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 106 -VecNorm 8 1.0 1.7034e-02 1.9 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 28 -VecCopy 2 1.0 1.8677e-04 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 2.9627e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 5.5690e-04 1.3 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1498 -VecAYPX 6 1.0 3.7828e-04 1.7 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 945 -VecScatterBegin 7 1.0 3.2093e-04 1.1 0.00e+00 0.0 4.2e+01 5.7e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 -VecScatterEnd 7 1.0 8.7135e-03 8.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 1.1168e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 3 1.0 3.4549e-04 1.2 0.00e+00 0.0 3.6e+01 8.3e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 -SFPack 7 1.0 8.6785e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 7 1.0 1.4986e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 1.8919e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 5.2255e-01 1.0 2.82e+06 1.0 4.2e+01 5.7e+03 2.4e+01 3 80 47 45 33 3 80 47 45 44 16 -PCSetUp 1 1.0 5.9081e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 3 0 0 0 3 3 0 0 0 4 0 -PCApply 8 1.0 4.9583e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 +BuildTwoSided 5 1.0 1.4679e-02 34.6 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 +BuildTwoSidedF 2 1.0 1.4602e-02 40.4 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatMult 7 1.0 1.7919e-03 1.0 1.95e+06 1.0 4.2e+01 5.5e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 3198 +MatConvert 1 1.0 3.5621e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 +MatAssemblyBegin 5 1.0 1.5917e-02 8.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatAssemblyEnd 5 1.0 3.2029e-03 1.1 3.77e+03 1.3 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 3 +MatGetRowIJ 4 1.0 1.4010e-06 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 5.0243e-04 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 +MatSetPreallCOO 2 1.0 9.9963e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetValuesCOO 2 1.0 6.4919e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecTDot 16 1.0 2.8137e-04 1.3 3.23e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 3388 +VecNorm 8 1.0 4.0192e-04 2.6 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 1186 +VecCopy 2 1.0 4.7085e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 5.9594e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 1.1163e-04 1.1 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 7472 +VecAYPX 6 1.0 5.8001e-05 1.2 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 6164 +VecScatterBegin 7 1.0 1.1442e-04 1.3 0.00e+00 0.0 4.2e+01 5.5e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 +VecScatterEnd 7 1.0 2.8875e-04 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 3.2754e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 3 1.0 1.8872e-04 1.1 0.00e+00 0.0 3.6e+01 8.0e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 +SFPack 7 1.0 2.6849e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 7 1.0 1.5210e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 7.7763e-05 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 6.3377e-02 1.0 2.83e+06 1.0 4.2e+01 5.5e+03 2.4e+01 0 80 47 45 33 0 80 47 45 44 132 +PCSetUp 1 1.0 1.4867e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 +PCApply 8 1.0 6.0831e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -3231,9 +3267,9 @@ Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== -Average time to get PetscTime(): 1.2023e-06 -Average time for MPI_Barrier(): 5.6294e-06 -Average time for zero size MPI_Send(): 7.25467e-05 +Average time to get PetscTime(): 4.94e-08 +Average time for MPI_Barrier(): 2.1974e-06 +Average time for zero size MPI_Send(): 2.987e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) @@ -3290,69 +3326,69 @@ Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line ==== poisson strong scaling (3 processes with ndofs=30000) ==== -[2025-02-22 03:21:16.615] [RANK: 0] [info] Using partitioner with 216000 cell data -[2025-02-22 03:21:16.622] [RANK: 0] [info] Compute partition of cells across ranks -[2025-02-22 03:21:16.622] [RANK: 0] [info] Building mesh dual graph -[2025-02-22 03:21:16.622] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2025-02-22 03:21:16.791] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2025-02-22 03:21:16.819] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:16.819] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:16.819] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2025-02-22 03:21:16.834] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) -[2025-02-22 03:21:16.834] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2025-02-22 03:21:34.937] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2025-02-22 03:21:34.960] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2025-02-22 03:21:35.035] [RANK: 0] [info] Extract basic topology: 212816->212816 -[2025-02-22 03:21:35.036] [RANK: 0] [info] Build local dual graph -[2025-02-22 03:21:35.036] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2025-02-22 03:21:35.238] [RANK: 0] [info] GPS pseudo-diameter:(168) 52481-731 -[2025-02-22 03:21:35.272] [RANK: 0] [info] Create topology (single cell type) -[2025-02-22 03:21:35.272] [RANK: 0] [info] Create topology (generalised) -[2025-02-22 03:21:35.289] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2025-02-22 03:21:35.316] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2025-02-22 03:21:35.495] [RANK: 0] [info] Compute ghost indices -[2025-02-22 03:21:35.495] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2025-02-22 03:21:35.508] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2025-02-22 03:21:35.610] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2025-02-22 03:21:35.620] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2025-02-22 03:21:35.873] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:35.896] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:35.944] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:35.972] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:36.058] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2025-02-22 03:21:36.072] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2025-02-22 03:21:36.072] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2025-02-22 03:21:36.087] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:36.087] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:36.087] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2025-02-22 03:21:36.089] [RANK: 0] [info] Checking required entities per dimension -[2025-02-22 03:21:36.089] [RANK: 0] [info] Cell type: 0 dofmap: 53204x4 -[2025-02-22 03:21:36.103] [RANK: 0] [info] Global index computation -[2025-02-22 03:21:36.104] [RANK: 0] [info] Got 1 index_maps -[2025-02-22 03:21:36.113] [RANK: 0] [info] Get global indices -[2025-02-22 03:21:36.116] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:36.117] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:46.346] [RANK: 0] [info] Using partitioner with 216000 cell data +[2026-03-28 11:49:46.348] [RANK: 0] [info] Compute partition of cells across ranks +[2026-03-28 11:49:46.348] [RANK: 0] [info] Building mesh dual graph +[2026-03-28 11:49:46.348] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2026-03-28 11:49:46.390] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2026-03-28 11:49:46.410] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:49:46.410] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:49:46.410] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2026-03-28 11:49:46.412] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) +[2026-03-28 11:49:46.412] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2026-03-28 11:49:59.971] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2026-03-28 11:49:59.971] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2026-03-28 11:49:59.977] [RANK: 0] [info] Extract basic topology: 212912->212912 +[2026-03-28 11:49:59.978] [RANK: 0] [info] Build local dual graph +[2026-03-28 11:49:59.978] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2026-03-28 11:50:00.038] [RANK: 0] [info] GPS pseudo-diameter:(166) 51449-3654 +[2026-03-28 11:50:00.048] [RANK: 0] [info] Create topology (single cell type) +[2026-03-28 11:50:00.049] [RANK: 0] [info] Create topology (generalised) +[2026-03-28 11:50:00.059] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2026-03-28 11:50:00.059] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2026-03-28 11:50:00.077] [RANK: 0] [info] Compute ghost indices +[2026-03-28 11:50:00.077] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2026-03-28 11:50:00.077] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2026-03-28 11:50:00.082] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2026-03-28 11:50:00.082] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2026-03-28 11:50:00.099] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:50:00.100] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:50:00.100] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:50:00.100] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:50:00.107] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2026-03-28 11:50:00.107] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2026-03-28 11:50:00.107] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2026-03-28 11:50:00.107] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:50:00.107] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:50:00.107] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2026-03-28 11:50:00.108] [RANK: 0] [info] Checking required entities per dimension +[2026-03-28 11:50:00.108] [RANK: 0] [info] Cell type: 0 dofmap: 53228x4 +[2026-03-28 11:50:00.112] [RANK: 0] [info] Global index computation +[2026-03-28 11:50:00.112] [RANK: 0] [info] Got 1 index_maps +[2026-03-28 11:50:00.113] [RANK: 0] [info] Get global indices +[2026-03-28 11:50:00.113] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:50:00.113] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times -[2025-02-22 03:21:36.122] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2025-02-22 03:21:36.233] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:36.233] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:36.365] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:36.365] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:36.371] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2025-02-22 03:21:36.371] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2025-02-22 03:21:36.377] [RANK: 0] [info] Checking required entities per dimension -[2025-02-22 03:21:36.377] [RANK: 0] [info] Cell type: 0 dofmap: 53204x4 -[2025-02-22 03:21:36.388] [RANK: 0] [info] Global index computation -[2025-02-22 03:21:36.388] [RANK: 0] [info] Got 1 index_maps -[2025-02-22 03:21:36.389] [RANK: 0] [info] Get global indices -[2025-02-22 03:21:36.391] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2025-02-22 03:21:36.391] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2025-02-22 03:21:36.392] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2025-02-22 03:21:36.394] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2025-02-22 03:21:36.394] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2025-02-22 03:21:36.480] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2025-02-22 03:21:36.480] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) -[2025-02-22 03:21:36.564] [RANK: 0] [info] Column ghost size increased from 456 to 1271 +[2026-03-28 11:50:00.116] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2026-03-28 11:50:00.156] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:50:00.158] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:50:00.248] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:50:00.248] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:50:00.250] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2026-03-28 11:50:00.250] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2026-03-28 11:50:00.251] [RANK: 0] [info] Checking required entities per dimension +[2026-03-28 11:50:00.251] [RANK: 0] [info] Cell type: 0 dofmap: 53228x4 +[2026-03-28 11:50:00.257] [RANK: 0] [info] Global index computation +[2026-03-28 11:50:00.257] [RANK: 0] [info] Got 1 index_maps +[2026-03-28 11:50:00.258] [RANK: 0] [info] Get global indices +[2026-03-28 11:50:00.258] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2026-03-28 11:50:00.258] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2026-03-28 11:50:00.259] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2026-03-28 11:50:00.259] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2026-03-28 11:50:00.259] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2026-03-28 11:50:00.278] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2026-03-28 11:50:00.278] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) +[2026-03-28 11:50:00.296] [RANK: 0] [info] Column ghost size increased from 468 to 1251 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -3366,7 +3402,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -[2025-02-22 03:21:36.889] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2026-03-28 11:50:00.347] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -3412,41 +3448,41 @@ [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 19.510000 19.510000 -Build dofmap data | 2 0.025000 0.050000 -Build sparsity | 1 0.030000 0.030000 +Build BoxMesh (tetrahedra) | 1 13.770000 13.770000 +Build dofmap data | 2 0.005000 0.010000 +Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.010000 0.010000 -Compute dof reordering map | 2 0.005000 0.010000 -Compute entities of dim = 2 | 1 0.250000 0.250000 -Compute graph partition (SCOTCH) | 1 18.090000 18.090000 -Compute local part of mesh dual graph (mixed) | 2 0.180000 0.360000 +Compute dof reordering map | 2 0.000000 0.000000 +Compute entities of dim = 2 | 1 0.130000 0.130000 +Compute graph partition (SCOTCH) | 1 13.550000 13.550000 +Compute local part of mesh dual graph (mixed) | 2 0.060000 0.120000 Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.040000 0.040000 +Compute non-local part of mesh dual graph | 1 0.030000 0.030000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.110000 0.110000 -Distribute row-wise data (scalable) | 1 0.030000 0.030000 -GPS: create_level_structure | 5 0.004000 0.020000 -Gibbs-Poole-Stockmeyer ordering | 1 0.040000 0.040000 -Init MPI | 1 0.630000 0.630000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 +Distribute row-wise data (scalable) | 1 0.000000 0.000000 +GPS: create_level_structure | 2 0.000000 0.000000 +Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 +Init MPI | 1 0.020000 0.020000 Init PETSc | 1 0.010000 0.010000 -Init dofmap from element dofmap | 2 0.015000 0.030000 +Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 1.010000 1.010000 +PETSc Krylov solver | 1 0.210000 0.210000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 18.080000 18.080000 -SparsityPattern::finalize | 1 0.070000 0.070000 -Topology: create | 1 0.890000 0.890000 -Topology: determine shared index ownership | 1 0.290000 0.290000 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.020000 0.020000 -ZZZ Assemble | 1 0.490000 0.490000 -ZZZ Assemble matrix | 1 0.240000 0.240000 -ZZZ Assemble vector | 1 0.050000 0.050000 -ZZZ Create Mesh | 1 19.510000 19.510000 -ZZZ Create RHS function | 1 0.090000 0.090000 +SCOTCH: call SCOTCH_dgraphPart | 1 13.550000 13.550000 +SparsityPattern::finalize | 1 0.010000 0.010000 +Topology: create | 1 0.070000 0.070000 +Topology: determine shared index ownership | 1 0.020000 0.020000 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 +ZZZ Assemble | 1 0.090000 0.090000 +ZZZ Assemble matrix | 1 0.040000 0.040000 +ZZZ Assemble vector | 1 0.010000 0.010000 +ZZZ Create Mesh | 1 13.770000 13.770000 +ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.260000 0.260000 -ZZZ FunctionSpace | 1 0.020000 0.020000 -ZZZ Solve | 1 1.020000 1.020000 +ZZZ Create facets and facet->cell connectivity | 1 0.140000 0.140000 +ZZZ FunctionSpace | 1 0.000000 0.000000 +ZZZ Solve | 1 0.210000 0.210000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -3455,16 +3491,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos11-amd64 with 3 processes, by pbuilder1 on Sat Feb 22 03:21:37 2025 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Sat Mar 28 11:50:00 2026 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total -Time (sec): 2.130e+01 1.000 2.130e+01 +Time (sec): 1.421e+01 1.000 1.421e+01 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 3.558e+06 1.031 3.489e+06 1.047e+07 -Flops/sec: 1.671e+05 1.031 1.638e+05 4.914e+05 +Flops: 3.555e+06 1.031 3.489e+06 1.047e+07 +Flops/sec: 2.502e+05 1.031 2.455e+05 7.366e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 -MPI Msg Len (bytes): 1.919e+05 1.214 5.874e+03 5.287e+05 +MPI Msg Len (bytes): 1.808e+05 1.165 5.737e+03 5.163e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -3473,7 +3509,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 2.1297e+01 100.0% 1.0466e+07 100.0% 9.000e+01 100.0% 5.874e+03 100.0% 5.400e+01 75.0% + 0: Main Stage: 1.4211e+01 100.0% 1.0468e+07 100.0% 9.000e+01 100.0% 5.737e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3497,32 +3533,32 @@ --- Event Stage 0: Main Stage -BuildTwoSided 5 1.0 1.1305e-01 990.5 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 -BuildTwoSidedF 2 1.0 1.1314e-01 516.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatMult 7 1.0 1.2415e-02 1.0 1.95e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 462 -MatConvert 1 1.0 3.2827e-02 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 -MatAssemblyBegin 5 1.0 1.1630e-01 9.9 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatAssemblyEnd 5 1.0 2.3899e-02 1.2 3.82e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 0 -MatGetRowIJ 4 1.0 1.6938e-05 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 8.3066e-04 6.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 -MatSetPreallCOO 2 1.0 1.3892e-02 4.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetValuesCOO 2 1.0 7.1247e-03 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecTDot 16 1.0 1.1149e-03 1.7 3.23e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 855 -VecNorm 8 1.0 1.1306e-02 9.2 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 42 -VecCopy 2 1.0 1.1951e-04 5.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 1.4994e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 8.6036e-03 29.0 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 97 -VecAYPX 6 1.0 2.6117e-04 4.3 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1369 -VecScatterBegin 7 1.0 3.7247e-04 1.2 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 -VecScatterEnd 7 1.0 6.3178e-03 2.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 1.2571e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 3 1.0 2.9344e-04 1.1 0.00e+00 0.0 3.6e+01 8.2e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 -SFPack 7 1.0 9.3811e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 7 1.0 1.8260e-04 129.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 1.4555e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 4.7322e-01 1.0 2.84e+06 1.0 4.2e+01 5.6e+03 2.4e+01 2 80 47 45 33 2 80 47 45 44 18 -PCSetUp 1 1.0 5.4211e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 3 0 0 0 3 3 0 0 0 4 0 -PCApply 8 1.0 4.4946e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 +BuildTwoSided 5 1.0 3.1473e-03 58.7 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 +BuildTwoSidedF 2 1.0 3.1354e-03 62.5 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatMult 7 1.0 2.0135e-03 1.0 1.95e+06 1.0 4.2e+01 5.5e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 2846 +MatConvert 1 1.0 3.8483e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 +MatAssemblyBegin 5 1.0 4.4735e-03 2.9 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatAssemblyEnd 5 1.0 2.8913e-03 1.0 3.74e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 4 +MatGetRowIJ 4 1.0 1.4010e-06 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 3.7796e-04 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 +MatSetPreallCOO 2 1.0 1.0669e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetValuesCOO 2 1.0 7.6936e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecTDot 16 1.0 2.9264e-04 1.2 3.23e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 3258 +VecNorm 8 1.0 2.5705e-04 1.3 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 1854 +VecCopy 2 1.0 4.5359e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 5.7793e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 1.4214e-04 1.1 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 5869 +VecAYPX 6 1.0 9.6168e-05 1.1 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 3717 +VecScatterBegin 7 1.0 1.5008e-04 1.1 0.00e+00 0.0 4.2e+01 5.5e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 +VecScatterEnd 7 1.0 1.4218e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 2.9943e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 3 1.0 1.1861e-04 1.0 0.00e+00 0.0 3.6e+01 8.0e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 +SFPack 7 1.0 3.2086e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 7 1.0 1.8950e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 6.9611e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 6.6639e-02 1.0 2.84e+06 1.0 4.2e+01 5.5e+03 2.4e+01 0 80 47 45 33 0 80 47 45 44 125 +PCSetUp 1 1.0 1.3904e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 +PCApply 8 1.0 6.3717e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -3539,9 +3575,9 @@ Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== -Average time to get PetscTime(): 8.679e-07 -Average time for MPI_Barrier(): 5.2024e-06 -Average time for zero size MPI_Send(): 6.55467e-06 +Average time to get PetscTime(): 4.88e-08 +Average time for MPI_Barrier(): 1.507e-06 +Average time for zero size MPI_Send(): 2.336e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) @@ -3602,7 +3638,7 @@ dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -3643,12 +3679,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2588651/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2078850 and its subdirectories -I: Current time: Sat Feb 22 03:22:08 -12 2025 -I: pbuilder-time-stamp: 1740237728 +I: removing directory /srv/workspace/pbuilder/2588651 and its subdirectories +I: Current time: Sat Mar 28 11:50:15 +14 2026 +I: pbuilder-time-stamp: 1774648215 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/fenicsx-performance-tests_0.9.0-2.diff: 84.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/fenicsx-performance-tests_0.9.0-2.diff.gz b2/build.log: 83.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 83.9% -- replaced with stdout Sat Feb 22 15:27:18 UTC 2025 I: diffoscope 289 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_fenicsx-performance-tests_trixie_amd64_1740238038 + touch /var/log/reproducible-builds/diffoscope_stamp_fenicsx-performance-tests_trixie_amd64_1740238038 + RESULT=0 + systemd-run '--description=diffoscope on fenicsx-performance-tests/0.9.0-2 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_31-33683 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM --run-session -c jenkins-reproducible-trixie-diffoscope-c973fe73-3085-4d98-9cb0-90628ff19420 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/dbd-tmp-CksYejU ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/fenicsx-performance-tests_0.9.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/fenicsx-performance-tests_0.9.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/fenicsx-performance-tests_0.9.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b1/fenicsx-performance-tests_0.9.0-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b2/fenicsx-performance-tests_0.9.0-2_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_31-33683.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/fenicsx-performance-tests_0.9.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/fenicsx-performance-tests_0.9.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/fenicsx-performance-tests_0.9.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b1/fenicsx-performance-tests_0.9.0-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1YiLT6fM/b2/fenicsx-performance-tests_0.9.0-2_amd64.changes ## close_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 254.104s) 136.244s 1082 calls readelf 101.175s 127 calls diff 15.199s 220 calls objdump 0.826s 2 calls objcopy 0.452s 20 calls xz 0.206s 22 calls strings 0.001s 18 calls cmp (internal) ## compare_files (cumulative) (total time: 716.110s) 137.709s 1 call abc.DotChangesFile 137.678s 2 calls abc.DebFile 137.597s 4 calls abc.XzFile 137.266s 2 calls abc.DebDataTarFile 136.642s 2 calls abc.ElfFile 27.327s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.908s 37 calls diffoscope.comparators.elf.ElfSection 0.886s 3 calls diffoscope.comparators.elf.ElfStringSection 0.067s 2 calls abc.TarFile 0.014s 1 call abc.TextFile 0.008s 2 calls abc.Md5sumsFile 0.008s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## container_extract (total time: 0.578s) 0.453s 20 calls diffoscope.comparators.xz.XzContainer 0.059s 16 calls diffoscope.comparators.deb.DebTarContainer 0.058s 24 calls diffoscope.comparators.deb.DebContainer 0.008s 18 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.187s) 0.187s 261 calls linediff ## has_same_content_as (total time: 0.003s) 0.000s 4 calls abc.Md5sumsFile 0.000s 3 calls abc.DebFile 0.000s 4 calls abc.TextFile 0.000s 2 calls abc.DebDataTarFile 0.000s 4 calls abc.XzFile 0.000s 2 calls abc.ElfFile 0.000s 37 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.TarFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 139.472s) 139.467s 2 calls outputs 0.005s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 1.381s) 1.375s 1 call html 0.003s 1 call text 0.003s 1 call json ## recognizes (total time: 0.559s) 0.246s 900 calls diffoscope.comparators.utils.archive.ArchiveMember 0.196s 1808 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.071s 12 calls diffoscope.comparators.binary.FilesystemFile 0.045s 324 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.490s) 0.490s 74 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 2min 19.781s CPU time consumed: 3min 4.821s Sat Feb 22 15:29:38 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Feb 22 15:29:38 UTC 2025 E: fenicsx-performance-tests failed to build reproducibly in trixie on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 15:29:38] INFO: Starting at 2025-02-22 15:29:38.840141 [2025-02-22 15:29:38] INFO: Generating the pages of 1 package(s) [2025-02-22 15:29:39] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/fenicsx-performance-tests didn't produce a buildlog, even though it has been built. [2025-02-22 15:29:39] INFO: Finished at 2025-02-22 15:29:39.261689, took: 0:00:00.421555 Sat Feb 22 15:29:39 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/fenicsx-performance-tests.html Sat Feb 22 15:29:39 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 15:29:39 UTC 2025 I: Submitting 20K b1/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc https://buildinfo.debian.net/19d64999a082346eab020420b1e3aff3b33d735f/fenicsx-performance-tests_0.9.0-2_all Sat Feb 22 15:29:41 UTC 2025 I: Submitting 20K b2/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc https://buildinfo.debian.net/bffd22cf9bf90ce545ab8676dea3b9afae8e02a8/fenicsx-performance-tests_0.9.0-2_all Sat Feb 22 15:29:44 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 15:29:44 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 15:29:44 UTC 2025 I: Removing signed fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc files: removed './b1/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc' removed './b2/fenicsx-performance-tests_0.9.0-2_amd64.buildinfo.asc' 1740238184 amd64 trixie fenicsx-performance-tests Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/fenicsx-performance-tests_0.9.0-2.rbuild.log: 83.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/fenicsx-performance-tests_0.9.0-2.rbuild.log.gz [2025-02-22 15:29:44] INFO: Starting at 2025-02-22 15:29:44.841529 [2025-02-22 15:29:44] INFO: Generating the pages of 1 package(s) [2025-02-22 15:29:45] INFO: Finished at 2025-02-22 15:29:45.258654, took: 0:00:00.417131 All cleanup done. Sat Feb 22 15:29:45 UTC 2025 - total duration: 0h 18m 42s. Sat Feb 22 15:29:45 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-nOlIJAru, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 18min 48.925s CPU time consumed: 7.533s