Running as unit: rb-build-amd64_31-57904.service; invocation ID: d1f239d3978a45608435fa06be5d6e13 ==================================================================================== Thu Sep 18 12:25:49 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_31) on jenkins, called using "ionos11-amd64 ionos5-amd64" as arguments. Thu Sep 18 12:25:49 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-DTAZ6onz" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 12:25:49 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Sep 18 12:25:49 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-BvksIc' Thu Sep 18 12:25:49 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Sep 18 12:25:49 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-8IXGUp' ok, let's check if allelecount is building anywhere yet… ok, allelecount is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of allelecount in forky on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Thu Sep 18 12:25:58 UTC 2025 I: starting to build allelecount/forky/amd64 on jenkins on '2025-09-18 12:25' Thu Sep 18 12:25:58 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_31/57904/console.log 1758198358 amd64 forky allelecount Thu Sep 18 12:25:58 UTC 2025 I: Downloading source for forky/allelecount=4.3.0-3 --2025-09-18 12:25:58-- http://deb.debian.org/debian/pool/main/a/allelecount/allelecount_4.3.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2409 (2.4K) [text/prs.lines.tag] Saving to: ‘allelecount_4.3.0-3.dsc’ 0K .. 100% 271M=0s 2025-09-18 12:25:58 (271 MB/s) - ‘allelecount_4.3.0-3.dsc’ saved [2409/2409] --2025-09-18 12:25:58-- http://deb.debian.org/debian/pool/main/a/allelecount/allelecount_4.3.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2409 (2.4K) [text/prs.lines.tag] Saving to: ‘allelecount_4.3.0-3.dsc’ 0K .. 100% 271M=0s 2025-09-18 12:25:58 (271 MB/s) - ‘allelecount_4.3.0-3.dsc’ saved [2409/2409] Thu Sep 18 12:25:58 UTC 2025 I: allelecount_4.3.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: allelecount Binary: allelecount, liballelecount-perl Architecture: any all Version: 4.3.0-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/cancerit/alleleCount Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/allelecount Vcs-Git: https://salsa.debian.org/med-team/allelecount.git Testsuite: autopkgtest, autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libhts-dev, libbz2-dev, libconst-fast-perl , libdevel-cover-perl , libfile-slurp-perl , libfile-which-perl , libipc-system-simple-perl , libjson-perl , libpod-coverage-perl , libtest-fatal-perl , libtry-tiny-perl , perl Package-List: allelecount deb science optional arch=any liballelecount-perl deb perl optional arch=all Checksums-Sha1: c2e81c130d21010097c4e304d46881f808bf7123 1390569 allelecount_4.3.0.orig.tar.gz 8ce5e32027ba0035ec6b911717e5431ddfbdfc1a 16284 allelecount_4.3.0-3.debian.tar.xz Checksums-Sha256: 5363ae12c2385c962728336a4498b1a29c9eaa3d4a24492d0debf897771cfd3c 1390569 allelecount_4.3.0.orig.tar.gz 4e2b1dff61b8c788d23bfe68c5d9da3cbc2bbda07722292979844a382adc0737 16284 allelecount_4.3.0-3.debian.tar.xz Files: 331975437e661cab1a950c3b3d2cc5c2 1390569 allelecount_4.3.0.orig.tar.gz c502a342cbf0a47e917195dbba8b23f4 16284 allelecount_4.3.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdYa30RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGIyA//arqKPufJ/W5SUy2ygPsuR31N1cRwMs38 x+sfUcis3ZSmz7wjtRyOW79JKxX/dazzaYiVTLrKfyeUkOPr4I6zS82CFR0qcqUJ dfHoD/6up2F/d0It4NVHLstPVGVr1nv+f0MW3L7ZrLvfRlxxRsngzlkEgh1e2VkN fBFMketCOf8QS4HtJwAXNz81o0gnqTXQ9xivgUt6IG/gX+jsudfWPj2z5YKiUMO9 NJgJWjsGIsAuCxotOy/zGkCOJTLP2LiQJceAQ1GGH3fV6cMn6tX3lBmYK4O5EBWH 6Z6nHbb3ZPNHPWzK9UetWP8M8+zQxMEr2jAJJFjrxwfrQcfuhRpnsGNlX1ewWWqi x73CDmVi4iLt/zGOezwh65aBqpI3rSsYzjkV3u+h9SNBkPgSRZgXfoUekaPK31ZV HiU9jDYtOOX5mNRiEYZtyUHb+i9rnJ0JcO1bEy62paJibUix76XG8BxJlEWZFtLS 5RKpl5nx2WOSv8h+wMRQ2+2qJfAPMlCgAvFXvDpQbQfgXUxn0MsGGuBkJqgm3L7p DGFs+BqfsMeD+M4/SJ4QzdemdFBhPQx3AoCJ2SJH6pZXoQc9a4p3Jtuev/7b41q1 cXjMyPrJlFq+cVwWua5C11wjr4zlXdaLDyTICjGC+pj1HskhfJGXcSob47kQZWEl Y2twcSopH4s= =uSbc -----END PGP SIGNATURE----- Thu Sep 18 12:25:58 UTC 2025 I: Checking whether the package is not for us Thu Sep 18 12:25:58 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Sep 18 12:25:58 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Sep 18 12:25:58 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Sep 18 12:25:58 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-YDXUL9' ==================================================================================== Thu Sep 18 12:25:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 allelecount forky /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9 4.3.0-3" as arguments. Thu Sep 18 12:25:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-Aa4Fmv3y" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 12:25:59 UTC 2025 I: Downloading source for forky/allelecount=4.3.0-3 Reading package lists... NOTICE: 'allelecount' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/allelecount.git Please use: git clone https://salsa.debian.org/med-team/allelecount.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1409 kB of source archives. Get:1 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (dsc) [2409 B] Get:2 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (tar) [1391 kB] Get:3 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (diff) [16.3 kB] Fetched 1409 kB in 0s (41.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'allelecount' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/allelecount.git Please use: git clone https://salsa.debian.org/med-team/allelecount.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1409 kB of source archives. Get:1 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (dsc) [2409 B] Get:2 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (tar) [1391 kB] Get:3 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (diff) [16.3 kB] Fetched 1409 kB in 0s (41.0 MB/s) Download complete and in download only mode ============================================================================= Building allelecount in forky on amd64 on ionos11-amd64 now. Date: Thu Sep 18 12:25:59 UTC 2025 Date UTC: Thu Sep 18 12:25:59 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 18 00:26:00 -12 2025 I: pbuilder-time-stamp: 1758198360 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [allelecount_4.3.0-3.dsc] I: copying [./allelecount_4.3.0.orig.tar.gz] I: copying [./allelecount_4.3.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./allelecount_4.3.0-3.dsc: no acceptable signature found dpkg-source: info: extracting allelecount in allelecount-4.3.0 dpkg-source: info: unpacking allelecount_4.3.0.orig.tar.gz dpkg-source: info: unpacking allelecount_4.3.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/50611/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f03b9b12f2be4f21b042ae8fee2a88b0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='50611' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/pbuilderrc_Lo8C --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b1 --logfile b1/build.log allelecount_4.3.0-3.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/50611/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev, libbz2-dev, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libjson-perl, libpod-coverage-perl, libtest-fatal-perl, libtry-tiny-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libconst-fast-perl; however: Package libconst-fast-perl is not installed. pbuilder-satisfydepends-dummy depends on libdevel-cover-perl; however: Package libdevel-cover-perl is not installed. pbuilder-satisfydepends-dummy depends on libfile-slurp-perl; however: Package libfile-slurp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfile-which-perl; however: Package libfile-which-perl is not installed. pbuilder-satisfydepends-dummy depends on libipc-system-simple-perl; however: Package libipc-system-simple-perl is not installed. pbuilder-satisfydepends-dummy depends on libjson-perl; however: Package libjson-perl is not installed. pbuilder-satisfydepends-dummy depends on libpod-coverage-perl; however: Package libpod-coverage-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-fatal-perl; however: Package libtest-fatal-perl is not installed. pbuilder-satisfydepends-dummy depends on libtry-tiny-perl; however: Package libtry-tiny-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libconst-fast-perl{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdata-optlist-perl{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-cover-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-slurp-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libipc-system-simple-perl{a} libjson-perl{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libparams-util-perl{a} libpipeline1{a} libpkgconf3{a} libpod-coverage-perl{a} libpod-parser-perl{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-install-perl{a} libtasn1-6{a} libtasn1-6-dev{a} libtest-fatal-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} libunistring5{a} liburi-perl{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libhttp-message-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc libtemplate-perl lynx publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 32.1 MB of archives. After unpacking 114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 35 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 50 http://deb.debian.org/debian forky/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get: 51 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.15.1-1 [140 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.15.1-1 [20.9 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.16.0-1 [431 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.23.1-1 [606 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.11.0-1 [101 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.15.1-1 [26.1 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.15.1-1 [196 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls-dev amd64 8.16.0-1 [562 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libdevel-cover-perl amd64 1.51-1 [196 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libfile-slurp-perl all 9999.32-2.1 [26.5 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.22.1+ds2-1 [499 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libhts-dev amd64 1.22.1+ds2-1 [1807 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libtest-fatal-perl all 0.017-2 [12.9 kB] Fetched 32.1 MB in 18s (1788 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../005-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../008-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../015-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../016-comerr-dev_2.1-1.47.2-3+b3_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../021-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../023-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../024-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../025-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../026-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../027-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../028-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../029-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../030-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../031-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../032-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../033-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../034-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../035-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../036-libgssrpc4t64_1.21.3-5_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../037-libkadm5clnt-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../038-libkdb5-10t64_1.21.3-5_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../039-libkadm5srv-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../040-krb5-multidev_1.21.3-5_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-5) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../041-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libbrotli-dev:amd64. Preparing to unpack .../042-libbrotli-dev_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli-dev:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../043-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../044-libparams-util-perl_1.102-3+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-3+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../045-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../046-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../047-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../048-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../049-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../050-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../051-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../052-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../053-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../054-libgnutls30t64_3.8.9-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../055-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../056-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../057-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../058-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../059-libnghttp3-9_1.11.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../060-libngtcp2-16_1.15.1-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.15.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../061-libngtcp2-crypto-gnutls8_1.15.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.15.1-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../062-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../063-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../064-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../065-libcurl3t64-gnutls_8.16.0-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.16.0-1) ... Selecting previously unselected package libevent-2.1-7t64:amd64. Preparing to unpack .../066-libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:amd64. Preparing to unpack .../067-libunbound8_1.23.1-1_amd64.deb ... Unpacking libunbound8:amd64 (1.23.1-1) ... Selecting previously unselected package libgnutls-dane0t64:amd64. Preparing to unpack .../068-libgnutls-dane0t64_3.8.9-3_amd64.deb ... Unpacking libgnutls-dane0t64:amd64 (3.8.9-3) ... Selecting previously unselected package libgnutls-openssl27t64:amd64. Preparing to unpack .../069-libgnutls-openssl27t64_3.8.9-3_amd64.deb ... Unpacking libgnutls-openssl27t64:amd64 (3.8.9-3) ... Selecting previously unselected package libidn2-dev:amd64. Preparing to unpack .../070-libidn2-dev_2.3.8-4_amd64.deb ... Unpacking libidn2-dev:amd64 (2.3.8-4) ... Selecting previously unselected package libp11-kit-dev:amd64. Preparing to unpack .../071-libp11-kit-dev_0.25.5-3_amd64.deb ... Unpacking libp11-kit-dev:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:amd64. Preparing to unpack .../072-libtasn1-6-dev_4.20.0-2_amd64.deb ... Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../073-libgmpxx4ldbl_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../074-libgmp-dev_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package nettle-dev:amd64. Preparing to unpack .../075-nettle-dev_3.10.1-1_amd64.deb ... Unpacking nettle-dev:amd64 (3.10.1-1) ... Selecting previously unselected package libgnutls28-dev:amd64. Preparing to unpack .../076-libgnutls28-dev_3.8.9-3_amd64.deb ... Unpacking libgnutls28-dev:amd64 (3.8.9-3) ... Selecting previously unselected package libkrb5-dev:amd64. Preparing to unpack .../077-libkrb5-dev_1.21.3-5_amd64.deb ... Unpacking libkrb5-dev:amd64 (1.21.3-5) ... Selecting previously unselected package libldap-dev:amd64. Preparing to unpack .../078-libldap-dev_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap-dev:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../079-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../080-pkgconf-bin_1.8.1-4_amd64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../081-pkgconf_1.8.1-4_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:amd64. Preparing to unpack .../082-libnghttp2-dev_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-dev:amd64. Preparing to unpack .../083-libnghttp3-dev_1.11.0-1_amd64.deb ... Unpacking libnghttp3-dev:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:amd64. Preparing to unpack .../084-libngtcp2-crypto-gnutls-dev_1.15.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls-dev:amd64 (1.15.1-1) ... Selecting previously unselected package libngtcp2-dev:amd64. Preparing to unpack .../085-libngtcp2-dev_1.15.1-1_amd64.deb ... Unpacking libngtcp2-dev:amd64 (1.15.1-1) ... Selecting previously unselected package libpsl-dev:amd64. Preparing to unpack .../086-libpsl-dev_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl-dev:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../087-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:amd64. Preparing to unpack .../088-librtmp-dev_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssl-dev:amd64. Preparing to unpack .../089-libssl-dev_3.5.2-1_amd64.deb ... Unpacking libssl-dev:amd64 (3.5.2-1) ... Selecting previously unselected package libssh2-1-dev:amd64. Preparing to unpack .../090-libssh2-1-dev_1.11.1-1_amd64.deb ... Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:amd64. Preparing to unpack .../091-libzstd-dev_1.5.7+dfsg-1.1_amd64.deb ... Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../092-libcurl4-gnutls-dev_8.16.0-1_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (8.16.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../093-libdeflate0_1.23-2_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-2) ... Selecting previously unselected package libdeflate-dev:amd64. Preparing to unpack .../094-libdeflate-dev_1.23-2_amd64.deb ... Unpacking libdeflate-dev:amd64 (1.23-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../095-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../096-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../097-libhtml-parser-perl_3.83-1+b2_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1+b2) ... Selecting previously unselected package libdevel-cover-perl. Preparing to unpack .../098-libdevel-cover-perl_1.51-1_amd64.deb ... Unpacking libdevel-cover-perl (1.51-1) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../099-libdevel-symdump-perl_2.18-5_all.deb ... Unpacking libdevel-symdump-perl (2.18-5) ... Selecting previously unselected package libfile-slurp-perl. Preparing to unpack .../100-libfile-slurp-perl_9999.32-2.1_all.deb ... Unpacking libfile-slurp-perl (9999.32-2.1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../101-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../102-libhtscodecs2_1.6.1-2_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-2) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../103-libhts3t64_1.22.1+ds2-1_amd64.deb ... Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../104-liblzma-dev_5.8.1-1.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.8.1-1.1) ... Selecting previously unselected package libhts-dev:amd64. Preparing to unpack .../105-libhts-dev_1.22.1+ds2-1_amd64.deb ... Unpacking libhts-dev:amd64 (1.22.1+ds2-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../106-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../107-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../108-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../109-libpod-coverage-perl_0.23-2_all.deb ... Unpacking libpod-coverage-perl (0.23-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../110-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libtest-fatal-perl. Preparing to unpack .../111-libtest-fatal-perl_0.017-2_all.deb ... Unpacking libtest-fatal-perl (0.017-2) ... Setting up libhtscodecs2:amd64 (1.6.1-2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libfile-slurp-perl (9999.32-2.1) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libtest-fatal-perl (0.017-2) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libunbound8:amd64 (1.23.1-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libssl-dev:amd64 (3.5.2-1) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.11.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libnghttp3-dev:amd64 (1.11.0-1) ... Setting up liblzma-dev:amd64 (5.8.1-1.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libjson-perl (4.10000-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.15.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdeflate-dev:amd64 (1.23-2) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libtool (2.5.4-5) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libngtcp2-dev:amd64 (1.15.1-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up libdevel-cover-perl (1.51-1) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.15.1-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libcurl3t64-gnutls:amd64 (8.16.0-1) ... Setting up debhelper (13.26) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.15.1-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:amd64 (8.16.0-1) ... Setting up libhts-dev:amd64 (1.22.1+ds2-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/allelecount-4.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../allelecount_4.3.0-3_source.changes dpkg-buildpackage: info: source package allelecount dpkg-buildpackage: info: source version 4.3.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_clean --sourcedirectory=c cd c && make -j40 clean make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_clean --sourcedirectory=perl make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_configure --sourcedirectory=c dh_auto_configure --sourcedirectory=perl cd perl && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for alleleCount Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_build --sourcedirectory=c --no-parallel cd c && make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno mkdir -p ./bin mkdir -p ./htslib_tmp #Do some magic to ensure we compile ALLELECOUNT with the static libhts.a rather than libhts.so ln -fs /libhts.a ./htslib_tmp/libhts.a gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic -c src/bam_access.c -o src/bam_access.o gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -I/usr/local//include -Isrc/ -I/ -rdynamic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -o ./bin/alleleCounter ./src/bam_access.o -L./htslib_tmp -L/usr/local//lib -lhts -lpthread -lz -lbz2 -llzma -lm -ldl ./src/alleleCounter.c -Wl,-z,relro -Wl,-z,now gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic ./src/bam_access.o -L./htslib_tmp -lhts -lpthread -lz -lbz2 -llzma -lm -ldl -L/usr/local//lib -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now tests/bam_access_tests.c -o tests/bam_access_tests tests/bam_access_tests.c: In function ‘test_bam_access_get_position_base_counts’: tests/bam_access_tests.c:45:13: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 45 | int res = bam_access_get_position_base_counts(chr,pos,stats,0,NULL); | ^~~ sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS remove tmp hts location rm -rf ./htslib_tmp Binaries have been compiled. make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_build --sourcedirectory=perl cd perl && make -j40 make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' cp lib/Sanger/CGP/AlleleCount/Genotype.pm blib/lib/Sanger/CGP/AlleleCount/Genotype.pm cp lib/Sanger/CGP/AlleleCount.pm blib/lib/Sanger/CGP/AlleleCount.pm cp lib/Sanger/CGP/AlleleCount/ToJson.pm blib/lib/Sanger/CGP/AlleleCount/ToJson.pm cp bin/alleleCounter.pl blib/script/alleleCounter.pl cp bin/alleleCounterToJson.pl blib/script/alleleCounterToJson.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounterToJson.pl Manifying 2 pod documents Manifying 2 pod documents make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_test --sourcedirectory=c cd c && make -j40 test make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_test --sourcedirectory=perl cd perl && make -j40 test TEST_VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/1_pm_compile.t .. ok 1 - use Sanger::CGP::AlleleCount; ok 2 - use Sanger::CGP::AlleleCount::ToJson; ok 3 - use Sanger::CGP::AlleleCount::Genotype; ok 4 - Check version inheritance exists (Sanger::CGP::AlleleCount) ok 5 - Check version inheritance exists (Sanger::CGP::AlleleCount::ToJson) ok 6 - An object of class 'Sanger::CGP::AlleleCount::ToJson' isa 'Sanger::CGP::AlleleCount::ToJson' ok 7 - Check version inheritance exists (Sanger::CGP::AlleleCount::Genotype) ok 8 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' 1..8 ok t/2_pl_compile.t .. ok 1 - Compilation check: /build/reproducible-path/allelecount-4.3.0/perl/t/../bin/alleleCounterToJson.pl ok 2 - Compilation check: /build/reproducible-path/allelecount-4.3.0/perl/t/../bin/alleleCounter.pl 1..2 ok t/genotype.t ...... ok 1 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 2 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 3 - Check execution of loci profile (BAM) ok 4 - Expected result for defaults (BAM) ok 5 - Check execution of loci profile (BAM, pbq=20) ok 6 - Expected result for defaults (BAM, pbq=20) ok 7 - Check execution of loci profile (BAM, mapq=1) ok 8 - Expected result for defaults (BAM, mapq=1) ok 9 - Check execution of snp6 loci profile (BAM) ok 10 - Expected result for defaults (BAM) ok 11 - Check execution of snp6 loci profile (BAM, pbq=20) ok 12 - Expected result for defaults (BAM, pbq=20) ok 13 - Check execution of snp6 loci profile (BAM, mapq=1) ok 14 - Expected result for defaults (BAM, mapq>0) ok 15 - Check execution of loci profile (CRAM) ok 16 - Expected result for defaults (CRAM) ok 17 - Check execution of loci profile (CRAM, pbq=20) ok 18 - Expected result for defaults (CRAM, pbq=20) ok 19 - Check execution of loci profile (CRAM, mapq=1) ok 20 - Expected result for defaults (CRAM, mapq=1) ok 21 - Check execution of snp6 loci profile (CRAM) ok 22 - Expected result for defaults (CRAM) ok 23 - Check execution of snp6 loci profile (CRAM, pbq=20) ok 24 - Expected result for defaults (CRAM, pbq=20) ok 25 - Check execution of snp6 loci profile (CRAM, mapq=1) ok 26 - Expected result for defaults (CRAM, mapq=1) 1..26 ok t/tojson.t ........ ok 1 - An object of class 'Sanger::CGP::AlleleCount::ToJson' isa 'Sanger::CGP::AlleleCount::ToJson' ok 2 - Check conversion to JSON 1..2 ok All tests successful. Files=4, Tests=38, 1 wallclock secs ( 0.03 usr 0.01 sys + 0.61 cusr 0.14 csys = 0.79 CPU) Result: PASS make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_install --sourcedirectory=c dh_auto_install --sourcedirectory=perl cd perl && make -j40 install DESTDIR=/build/reproducible-path/allelecount-4.3.0/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' Manifying 2 pod documents Manifying 2 pod documents Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/ToJson.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/Genotype.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounterToJson.pl.1p Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounter.pl.1p Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::ToJson.3pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/bin/alleleCounterToJson.pl Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/bin/alleleCounter.pl make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'allelecount-dbgsym' in '../allelecount-dbgsym_4.3.0-3_amd64.deb'. dpkg-deb: building package 'allelecount' in '../allelecount_4.3.0-3_amd64.deb'. dpkg-deb: building package 'liballelecount-perl' in '../liballelecount-perl_4.3.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../allelecount_4.3.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../allelecount_4.3.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/50611 and its subdirectories I: Current time: Thu Sep 18 00:31:19 -12 2025 I: pbuilder-time-stamp: 1758198679 Thu Sep 18 12:31:19 UTC 2025 I: Signing ./b1/allelecount_4.3.0-3_amd64.buildinfo as allelecount_4.3.0-3_amd64.buildinfo.asc Thu Sep 18 12:31:19 UTC 2025 I: Signed ./b1/allelecount_4.3.0-3_amd64.buildinfo as ./b1/allelecount_4.3.0-3_amd64.buildinfo.asc Thu Sep 18 12:31:19 UTC 2025 - build #1 for allelecount/forky/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Thu Sep 18 12:31:19 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Aa4Fmv3y, removing. /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9: total 16 -rw-rw-r-- 1 jenkins jenkins 2409 Dec 10 2024 allelecount_4.3.0-3.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 12:31 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 12:25 b2 -rw------- 1 jenkins jenkins 3533 Sep 18 12:25 rbuildlog.JmSVCTE /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b1: total 196 -rw-r--r-- 1 jenkins jenkins 31072 Sep 18 12:31 allelecount-dbgsym_4.3.0-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 16284 Sep 18 12:31 allelecount_4.3.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2409 Sep 18 12:31 allelecount_4.3.0-3.dsc -rw-r--r-- 1 jenkins jenkins 7860 Sep 18 12:31 allelecount_4.3.0-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8742 Sep 18 12:31 allelecount_4.3.0-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1905 Sep 18 12:31 allelecount_4.3.0-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 30212 Sep 18 12:31 allelecount_4.3.0-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1410 Sep 18 12:31 allelecount_4.3.0-3_source.changes -rw-r--r-- 1 jenkins jenkins 57292 Sep 18 12:31 build.log -rw-r--r-- 1 jenkins jenkins 24944 Sep 18 12:31 liballelecount-perl_4.3.0-3_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b2: total 0 Thu Sep 18 12:31:19 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 18 00:26:00 -12 2025 I: pbuilder-time-stamp: 1758198360 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [allelecount_4.3.0-3.dsc] I: copying [./allelecount_4.3.0.orig.tar.gz] I: copying [./allelecount_4.3.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./allelecount_4.3.0-3.dsc: no acceptable signature found dpkg-source: info: extracting allelecount in allelecount-4.3.0 dpkg-source: info: unpacking allelecount_4.3.0.orig.tar.gz dpkg-source: info: unpacking allelecount_4.3.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/50611/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f03b9b12f2be4f21b042ae8fee2a88b0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='50611' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/pbuilderrc_Lo8C --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b1 --logfile b1/build.log allelecount_4.3.0-3.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/50611/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev, libbz2-dev, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libjson-perl, libpod-coverage-perl, libtest-fatal-perl, libtry-tiny-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libconst-fast-perl; however: Package libconst-fast-perl is not installed. pbuilder-satisfydepends-dummy depends on libdevel-cover-perl; however: Package libdevel-cover-perl is not installed. pbuilder-satisfydepends-dummy depends on libfile-slurp-perl; however: Package libfile-slurp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfile-which-perl; however: Package libfile-which-perl is not installed. pbuilder-satisfydepends-dummy depends on libipc-system-simple-perl; however: Package libipc-system-simple-perl is not installed. pbuilder-satisfydepends-dummy depends on libjson-perl; however: Package libjson-perl is not installed. pbuilder-satisfydepends-dummy depends on libpod-coverage-perl; however: Package libpod-coverage-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-fatal-perl; however: Package libtest-fatal-perl is not installed. pbuilder-satisfydepends-dummy depends on libtry-tiny-perl; however: Package libtry-tiny-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libconst-fast-perl{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdata-optlist-perl{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-cover-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-slurp-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libipc-system-simple-perl{a} libjson-perl{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libparams-util-perl{a} libpipeline1{a} libpkgconf3{a} libpod-coverage-perl{a} libpod-parser-perl{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-install-perl{a} libtasn1-6{a} libtasn1-6-dev{a} libtest-fatal-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} libunistring5{a} liburi-perl{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libhttp-message-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc libtemplate-perl lynx publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 32.1 MB of archives. After unpacking 114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 35 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 50 http://deb.debian.org/debian forky/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get: 51 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.15.1-1 [140 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.15.1-1 [20.9 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.16.0-1 [431 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.23.1-1 [606 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.11.0-1 [101 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.15.1-1 [26.1 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.15.1-1 [196 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls-dev amd64 8.16.0-1 [562 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libdevel-cover-perl amd64 1.51-1 [196 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libfile-slurp-perl all 9999.32-2.1 [26.5 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.22.1+ds2-1 [499 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libhts-dev amd64 1.22.1+ds2-1 [1807 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libtest-fatal-perl all 0.017-2 [12.9 kB] Fetched 32.1 MB in 18s (1788 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../005-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../008-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../015-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../016-comerr-dev_2.1-1.47.2-3+b3_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../021-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../023-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../024-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../025-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../026-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../027-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../028-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../029-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../030-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../031-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../032-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../033-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../034-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../035-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../036-libgssrpc4t64_1.21.3-5_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../037-libkadm5clnt-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../038-libkdb5-10t64_1.21.3-5_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../039-libkadm5srv-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../040-krb5-multidev_1.21.3-5_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-5) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../041-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libbrotli-dev:amd64. Preparing to unpack .../042-libbrotli-dev_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli-dev:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../043-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../044-libparams-util-perl_1.102-3+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-3+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../045-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../046-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../047-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../048-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../049-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../050-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../051-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../052-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../053-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../054-libgnutls30t64_3.8.9-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../055-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../056-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../057-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../058-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../059-libnghttp3-9_1.11.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../060-libngtcp2-16_1.15.1-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.15.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../061-libngtcp2-crypto-gnutls8_1.15.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.15.1-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../062-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../063-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../064-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../065-libcurl3t64-gnutls_8.16.0-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.16.0-1) ... Selecting previously unselected package libevent-2.1-7t64:amd64. Preparing to unpack .../066-libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:amd64. Preparing to unpack .../067-libunbound8_1.23.1-1_amd64.deb ... Unpacking libunbound8:amd64 (1.23.1-1) ... Selecting previously unselected package libgnutls-dane0t64:amd64. Preparing to unpack .../068-libgnutls-dane0t64_3.8.9-3_amd64.deb ... Unpacking libgnutls-dane0t64:amd64 (3.8.9-3) ... Selecting previously unselected package libgnutls-openssl27t64:amd64. Preparing to unpack .../069-libgnutls-openssl27t64_3.8.9-3_amd64.deb ... Unpacking libgnutls-openssl27t64:amd64 (3.8.9-3) ... Selecting previously unselected package libidn2-dev:amd64. Preparing to unpack .../070-libidn2-dev_2.3.8-4_amd64.deb ... Unpacking libidn2-dev:amd64 (2.3.8-4) ... Selecting previously unselected package libp11-kit-dev:amd64. Preparing to unpack .../071-libp11-kit-dev_0.25.5-3_amd64.deb ... Unpacking libp11-kit-dev:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:amd64. Preparing to unpack .../072-libtasn1-6-dev_4.20.0-2_amd64.deb ... Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../073-libgmpxx4ldbl_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../074-libgmp-dev_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package nettle-dev:amd64. Preparing to unpack .../075-nettle-dev_3.10.1-1_amd64.deb ... Unpacking nettle-dev:amd64 (3.10.1-1) ... Selecting previously unselected package libgnutls28-dev:amd64. Preparing to unpack .../076-libgnutls28-dev_3.8.9-3_amd64.deb ... Unpacking libgnutls28-dev:amd64 (3.8.9-3) ... Selecting previously unselected package libkrb5-dev:amd64. Preparing to unpack .../077-libkrb5-dev_1.21.3-5_amd64.deb ... Unpacking libkrb5-dev:amd64 (1.21.3-5) ... Selecting previously unselected package libldap-dev:amd64. Preparing to unpack .../078-libldap-dev_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap-dev:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../079-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../080-pkgconf-bin_1.8.1-4_amd64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../081-pkgconf_1.8.1-4_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:amd64. Preparing to unpack .../082-libnghttp2-dev_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-dev:amd64. Preparing to unpack .../083-libnghttp3-dev_1.11.0-1_amd64.deb ... Unpacking libnghttp3-dev:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:amd64. Preparing to unpack .../084-libngtcp2-crypto-gnutls-dev_1.15.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls-dev:amd64 (1.15.1-1) ... Selecting previously unselected package libngtcp2-dev:amd64. Preparing to unpack .../085-libngtcp2-dev_1.15.1-1_amd64.deb ... Unpacking libngtcp2-dev:amd64 (1.15.1-1) ... Selecting previously unselected package libpsl-dev:amd64. Preparing to unpack .../086-libpsl-dev_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl-dev:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../087-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:amd64. Preparing to unpack .../088-librtmp-dev_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssl-dev:amd64. Preparing to unpack .../089-libssl-dev_3.5.2-1_amd64.deb ... Unpacking libssl-dev:amd64 (3.5.2-1) ... Selecting previously unselected package libssh2-1-dev:amd64. Preparing to unpack .../090-libssh2-1-dev_1.11.1-1_amd64.deb ... Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:amd64. Preparing to unpack .../091-libzstd-dev_1.5.7+dfsg-1.1_amd64.deb ... Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../092-libcurl4-gnutls-dev_8.16.0-1_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (8.16.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../093-libdeflate0_1.23-2_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-2) ... Selecting previously unselected package libdeflate-dev:amd64. Preparing to unpack .../094-libdeflate-dev_1.23-2_amd64.deb ... Unpacking libdeflate-dev:amd64 (1.23-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../095-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../096-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../097-libhtml-parser-perl_3.83-1+b2_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1+b2) ... Selecting previously unselected package libdevel-cover-perl. Preparing to unpack .../098-libdevel-cover-perl_1.51-1_amd64.deb ... Unpacking libdevel-cover-perl (1.51-1) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../099-libdevel-symdump-perl_2.18-5_all.deb ... Unpacking libdevel-symdump-perl (2.18-5) ... Selecting previously unselected package libfile-slurp-perl. Preparing to unpack .../100-libfile-slurp-perl_9999.32-2.1_all.deb ... Unpacking libfile-slurp-perl (9999.32-2.1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../101-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../102-libhtscodecs2_1.6.1-2_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-2) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../103-libhts3t64_1.22.1+ds2-1_amd64.deb ... Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../104-liblzma-dev_5.8.1-1.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.8.1-1.1) ... Selecting previously unselected package libhts-dev:amd64. Preparing to unpack .../105-libhts-dev_1.22.1+ds2-1_amd64.deb ... Unpacking libhts-dev:amd64 (1.22.1+ds2-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../106-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../107-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../108-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../109-libpod-coverage-perl_0.23-2_all.deb ... Unpacking libpod-coverage-perl (0.23-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../110-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libtest-fatal-perl. Preparing to unpack .../111-libtest-fatal-perl_0.017-2_all.deb ... Unpacking libtest-fatal-perl (0.017-2) ... Setting up libhtscodecs2:amd64 (1.6.1-2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libfile-slurp-perl (9999.32-2.1) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libtest-fatal-perl (0.017-2) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libunbound8:amd64 (1.23.1-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libssl-dev:amd64 (3.5.2-1) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.11.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libnghttp3-dev:amd64 (1.11.0-1) ... Setting up liblzma-dev:amd64 (5.8.1-1.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libjson-perl (4.10000-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.15.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdeflate-dev:amd64 (1.23-2) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libtool (2.5.4-5) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libngtcp2-dev:amd64 (1.15.1-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up libdevel-cover-perl (1.51-1) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.15.1-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libcurl3t64-gnutls:amd64 (8.16.0-1) ... Setting up debhelper (13.26) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.15.1-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:amd64 (8.16.0-1) ... Setting up libhts-dev:amd64 (1.22.1+ds2-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/allelecount-4.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../allelecount_4.3.0-3_source.changes dpkg-buildpackage: info: source package allelecount dpkg-buildpackage: info: source version 4.3.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_clean --sourcedirectory=c cd c && make -j40 clean make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_clean --sourcedirectory=perl make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_configure --sourcedirectory=c dh_auto_configure --sourcedirectory=perl cd perl && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for alleleCount Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_build --sourcedirectory=c --no-parallel cd c && make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno mkdir -p ./bin mkdir -p ./htslib_tmp #Do some magic to ensure we compile ALLELECOUNT with the static libhts.a rather than libhts.so ln -fs /libhts.a ./htslib_tmp/libhts.a gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic -c src/bam_access.c -o src/bam_access.o gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -I/usr/local//include -Isrc/ -I/ -rdynamic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -o ./bin/alleleCounter ./src/bam_access.o -L./htslib_tmp -L/usr/local//lib -lhts -lpthread -lz -lbz2 -llzma -lm -ldl ./src/alleleCounter.c -Wl,-z,relro -Wl,-z,now gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic ./src/bam_access.o -L./htslib_tmp -lhts -lpthread -lz -lbz2 -llzma -lm -ldl -L/usr/local//lib -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now tests/bam_access_tests.c -o tests/bam_access_tests tests/bam_access_tests.c: In function ‘test_bam_access_get_position_base_counts’: tests/bam_access_tests.c:45:13: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 45 | int res = bam_access_get_position_base_counts(chr,pos,stats,0,NULL); | ^~~ sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS remove tmp hts location rm -rf ./htslib_tmp Binaries have been compiled. make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_build --sourcedirectory=perl cd perl && make -j40 make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' cp lib/Sanger/CGP/AlleleCount/Genotype.pm blib/lib/Sanger/CGP/AlleleCount/Genotype.pm cp lib/Sanger/CGP/AlleleCount.pm blib/lib/Sanger/CGP/AlleleCount.pm cp lib/Sanger/CGP/AlleleCount/ToJson.pm blib/lib/Sanger/CGP/AlleleCount/ToJson.pm cp bin/alleleCounter.pl blib/script/alleleCounter.pl cp bin/alleleCounterToJson.pl blib/script/alleleCounterToJson.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounterToJson.pl Manifying 2 pod documents Manifying 2 pod documents make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_test --sourcedirectory=c cd c && make -j40 test make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_test --sourcedirectory=perl cd perl && make -j40 test TEST_VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/1_pm_compile.t .. ok 1 - use Sanger::CGP::AlleleCount; ok 2 - use Sanger::CGP::AlleleCount::ToJson; ok 3 - use Sanger::CGP::AlleleCount::Genotype; ok 4 - Check version inheritance exists (Sanger::CGP::AlleleCount) ok 5 - Check version inheritance exists (Sanger::CGP::AlleleCount::ToJson) ok 6 - An object of class 'Sanger::CGP::AlleleCount::ToJson' isa 'Sanger::CGP::AlleleCount::ToJson' ok 7 - Check version inheritance exists (Sanger::CGP::AlleleCount::Genotype) ok 8 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' 1..8 ok t/2_pl_compile.t .. ok 1 - Compilation check: /build/reproducible-path/allelecount-4.3.0/perl/t/../bin/alleleCounterToJson.pl ok 2 - Compilation check: /build/reproducible-path/allelecount-4.3.0/perl/t/../bin/alleleCounter.pl 1..2 ok t/genotype.t ...... ok 1 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 2 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 3 - Check execution of loci profile (BAM) ok 4 - Expected result for defaults (BAM) ok 5 - Check execution of loci profile (BAM, pbq=20) ok 6 - Expected result for defaults (BAM, pbq=20) ok 7 - Check execution of loci profile (BAM, mapq=1) ok 8 - Expected result for defaults (BAM, mapq=1) ok 9 - Check execution of snp6 loci profile (BAM) ok 10 - Expected result for defaults (BAM) ok 11 - Check execution of snp6 loci profile (BAM, pbq=20) ok 12 - Expected result for defaults (BAM, pbq=20) ok 13 - Check execution of snp6 loci profile (BAM, mapq=1) ok 14 - Expected result for defaults (BAM, mapq>0) ok 15 - Check execution of loci profile (CRAM) ok 16 - Expected result for defaults (CRAM) ok 17 - Check execution of loci profile (CRAM, pbq=20) ok 18 - Expected result for defaults (CRAM, pbq=20) ok 19 - Check execution of loci profile (CRAM, mapq=1) ok 20 - Expected result for defaults (CRAM, mapq=1) ok 21 - Check execution of snp6 loci profile (CRAM) ok 22 - Expected result for defaults (CRAM) ok 23 - Check execution of snp6 loci profile (CRAM, pbq=20) ok 24 - Expected result for defaults (CRAM, pbq=20) ok 25 - Check execution of snp6 loci profile (CRAM, mapq=1) ok 26 - Expected result for defaults (CRAM, mapq=1) 1..26 ok t/tojson.t ........ ok 1 - An object of class 'Sanger::CGP::AlleleCount::ToJson' isa 'Sanger::CGP::AlleleCount::ToJson' ok 2 - Check conversion to JSON 1..2 ok All tests successful. Files=4, Tests=38, 1 wallclock secs ( 0.03 usr 0.01 sys + 0.61 cusr 0.14 csys = 0.79 CPU) Result: PASS make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_install --sourcedirectory=c dh_auto_install --sourcedirectory=perl cd perl && make -j40 install DESTDIR=/build/reproducible-path/allelecount-4.3.0/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' Manifying 2 pod documents Manifying 2 pod documents Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/ToJson.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/Genotype.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounterToJson.pl.1p Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounter.pl.1p Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::ToJson.3pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/bin/alleleCounterToJson.pl Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/bin/alleleCounter.pl make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'allelecount-dbgsym' in '../allelecount-dbgsym_4.3.0-3_amd64.deb'. dpkg-deb: building package 'allelecount' in '../allelecount_4.3.0-3_amd64.deb'. dpkg-deb: building package 'liballelecount-perl' in '../liballelecount-perl_4.3.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../allelecount_4.3.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../allelecount_4.3.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/50611 and its subdirectories I: Current time: Thu Sep 18 00:31:19 -12 2025 I: pbuilder-time-stamp: 1758198679 Thu Sep 18 12:31:19 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu Sep 18 12:31:19 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu Sep 18 12:31:19 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Sep 18 12:31:19 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-jJwyxQ' ==================================================================================== Wed Oct 21 18:54:20 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "2 allelecount forky /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9 4.3.0-3" as arguments. Wed Oct 21 18:54:20 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-6gf22jWo" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Oct 21 18:54:20 UTC 2026 I: Downloading source for forky/allelecount=4.3.0-3 Reading package lists... NOTICE: 'allelecount' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/allelecount.git Please use: git clone https://salsa.debian.org/med-team/allelecount.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1409 kB of source archives. Get:1 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (dsc) [2409 B] Get:2 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (tar) [1391 kB] Get:3 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (diff) [16.3 kB] Fetched 1409 kB in 0s (65.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'allelecount' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/allelecount.git Please use: git clone https://salsa.debian.org/med-team/allelecount.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1409 kB of source archives. Get:1 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (dsc) [2409 B] Get:2 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (tar) [1391 kB] Get:3 http://deb.debian.org/debian forky/main allelecount 4.3.0-3 (diff) [16.3 kB] Fetched 1409 kB in 0s (65.0 MB/s) Download complete and in download only mode ============================================================================= Re-Building allelecount in forky on amd64 on ionos5-amd64 now. Date: Wed Oct 21 18:54:20 UTC 2026 Date UTC: Wed Oct 21 18:54:20 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/pbuilderrc_Yxbq + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' allelecount = debian-installer -o allelecount = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' allelecount = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/pbuilderrc_Yxbq --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b2 --logfile b2/build.log allelecount_4.3.0-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 22 08:54:20 +14 2026 I: pbuilder-time-stamp: 1792608860 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [allelecount_4.3.0-3.dsc] I: copying [./allelecount_4.3.0.orig.tar.gz] I: copying [./allelecount_4.3.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./allelecount_4.3.0-3.dsc: no acceptable signature found dpkg-source: info: extracting allelecount in allelecount-4.3.0 dpkg-source: info: unpacking allelecount_4.3.0.orig.tar.gz dpkg-source: info: unpacking allelecount_4.3.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 21 18:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=2ce644fcc4504abd8468b00c5c6f3ac4 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1847914 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/pbuilderrc_Yxbq --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b2 --logfile b2/build.log allelecount_4.3.0-3.dsc' SUDO_GID=110 SUDO_HOME=/var/lib/jenkins SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev, libbz2-dev, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libjson-perl, libpod-coverage-perl, libtest-fatal-perl, libtry-tiny-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libconst-fast-perl; however: Package libconst-fast-perl is not installed. pbuilder-satisfydepends-dummy depends on libdevel-cover-perl; however: Package libdevel-cover-perl is not installed. pbuilder-satisfydepends-dummy depends on libfile-slurp-perl; however: Package libfile-slurp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfile-which-perl; however: Package libfile-which-perl is not installed. pbuilder-satisfydepends-dummy depends on libipc-system-simple-perl; however: Package libipc-system-simple-perl is not installed. pbuilder-satisfydepends-dummy depends on libjson-perl; however: Package libjson-perl is not installed. pbuilder-satisfydepends-dummy depends on libpod-coverage-perl; however: Package libpod-coverage-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-fatal-perl; however: Package libtest-fatal-perl is not installed. pbuilder-satisfydepends-dummy depends on libtry-tiny-perl; however: Package libtry-tiny-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libconst-fast-perl{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdata-optlist-perl{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-cover-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-slurp-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libipc-system-simple-perl{a} libjson-perl{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libparams-util-perl{a} libpipeline1{a} libpkgconf3{a} libpod-coverage-perl{a} libpod-parser-perl{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-install-perl{a} libtasn1-6{a} libtasn1-6-dev{a} libtest-fatal-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} libunistring5{a} liburi-perl{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libhttp-message-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc libtemplate-perl lynx publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 32.1 MB of archives. After unpacking 114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 35 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 50 http://deb.debian.org/debian forky/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get: 51 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.15.1-1 [140 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.15.1-1 [20.9 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.16.0-1 [431 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.23.1-1 [606 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.11.0-1 [101 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.15.1-1 [26.1 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.15.1-1 [196 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls-dev amd64 8.16.0-1 [562 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libdevel-cover-perl amd64 1.51-1 [196 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libfile-slurp-perl all 9999.32-2.1 [26.5 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.22.1+ds2-1 [499 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libhts-dev amd64 1.22.1+ds2-1 [1807 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libtest-fatal-perl all 0.017-2 [12.9 kB] Fetched 32.1 MB in 11s (3050 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../005-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../008-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../015-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../016-comerr-dev_2.1-1.47.2-3+b3_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../021-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../023-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../024-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../025-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../026-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../027-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../028-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../029-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../030-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../031-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../032-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../033-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../034-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../035-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../036-libgssrpc4t64_1.21.3-5_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../037-libkadm5clnt-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../038-libkdb5-10t64_1.21.3-5_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../039-libkadm5srv-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../040-krb5-multidev_1.21.3-5_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-5) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../041-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libbrotli-dev:amd64. Preparing to unpack .../042-libbrotli-dev_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli-dev:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../043-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../044-libparams-util-perl_1.102-3+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-3+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../045-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../046-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../047-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../048-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../049-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../050-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../051-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../052-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../053-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../054-libgnutls30t64_3.8.9-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../055-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../056-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../057-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../058-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../059-libnghttp3-9_1.11.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../060-libngtcp2-16_1.15.1-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.15.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../061-libngtcp2-crypto-gnutls8_1.15.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.15.1-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../062-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../063-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../064-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../065-libcurl3t64-gnutls_8.16.0-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.16.0-1) ... Selecting previously unselected package libevent-2.1-7t64:amd64. Preparing to unpack .../066-libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:amd64. Preparing to unpack .../067-libunbound8_1.23.1-1_amd64.deb ... Unpacking libunbound8:amd64 (1.23.1-1) ... Selecting previously unselected package libgnutls-dane0t64:amd64. Preparing to unpack .../068-libgnutls-dane0t64_3.8.9-3_amd64.deb ... Unpacking libgnutls-dane0t64:amd64 (3.8.9-3) ... Selecting previously unselected package libgnutls-openssl27t64:amd64. Preparing to unpack .../069-libgnutls-openssl27t64_3.8.9-3_amd64.deb ... Unpacking libgnutls-openssl27t64:amd64 (3.8.9-3) ... Selecting previously unselected package libidn2-dev:amd64. Preparing to unpack .../070-libidn2-dev_2.3.8-4_amd64.deb ... Unpacking libidn2-dev:amd64 (2.3.8-4) ... Selecting previously unselected package libp11-kit-dev:amd64. Preparing to unpack .../071-libp11-kit-dev_0.25.5-3_amd64.deb ... Unpacking libp11-kit-dev:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:amd64. Preparing to unpack .../072-libtasn1-6-dev_4.20.0-2_amd64.deb ... Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../073-libgmpxx4ldbl_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../074-libgmp-dev_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package nettle-dev:amd64. Preparing to unpack .../075-nettle-dev_3.10.1-1_amd64.deb ... Unpacking nettle-dev:amd64 (3.10.1-1) ... Selecting previously unselected package libgnutls28-dev:amd64. Preparing to unpack .../076-libgnutls28-dev_3.8.9-3_amd64.deb ... Unpacking libgnutls28-dev:amd64 (3.8.9-3) ... Selecting previously unselected package libkrb5-dev:amd64. Preparing to unpack .../077-libkrb5-dev_1.21.3-5_amd64.deb ... Unpacking libkrb5-dev:amd64 (1.21.3-5) ... Selecting previously unselected package libldap-dev:amd64. Preparing to unpack .../078-libldap-dev_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap-dev:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../079-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../080-pkgconf-bin_1.8.1-4_amd64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../081-pkgconf_1.8.1-4_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:amd64. Preparing to unpack .../082-libnghttp2-dev_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-dev:amd64. Preparing to unpack .../083-libnghttp3-dev_1.11.0-1_amd64.deb ... Unpacking libnghttp3-dev:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:amd64. Preparing to unpack .../084-libngtcp2-crypto-gnutls-dev_1.15.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls-dev:amd64 (1.15.1-1) ... Selecting previously unselected package libngtcp2-dev:amd64. Preparing to unpack .../085-libngtcp2-dev_1.15.1-1_amd64.deb ... Unpacking libngtcp2-dev:amd64 (1.15.1-1) ... Selecting previously unselected package libpsl-dev:amd64. Preparing to unpack .../086-libpsl-dev_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl-dev:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../087-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:amd64. Preparing to unpack .../088-librtmp-dev_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssl-dev:amd64. Preparing to unpack .../089-libssl-dev_3.5.2-1_amd64.deb ... Unpacking libssl-dev:amd64 (3.5.2-1) ... Selecting previously unselected package libssh2-1-dev:amd64. Preparing to unpack .../090-libssh2-1-dev_1.11.1-1_amd64.deb ... Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:amd64. Preparing to unpack .../091-libzstd-dev_1.5.7+dfsg-1.1_amd64.deb ... Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../092-libcurl4-gnutls-dev_8.16.0-1_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (8.16.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../093-libdeflate0_1.23-2_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-2) ... Selecting previously unselected package libdeflate-dev:amd64. Preparing to unpack .../094-libdeflate-dev_1.23-2_amd64.deb ... Unpacking libdeflate-dev:amd64 (1.23-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../095-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../096-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../097-libhtml-parser-perl_3.83-1+b2_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1+b2) ... Selecting previously unselected package libdevel-cover-perl. Preparing to unpack .../098-libdevel-cover-perl_1.51-1_amd64.deb ... Unpacking libdevel-cover-perl (1.51-1) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../099-libdevel-symdump-perl_2.18-5_all.deb ... Unpacking libdevel-symdump-perl (2.18-5) ... Selecting previously unselected package libfile-slurp-perl. Preparing to unpack .../100-libfile-slurp-perl_9999.32-2.1_all.deb ... Unpacking libfile-slurp-perl (9999.32-2.1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../101-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../102-libhtscodecs2_1.6.1-2_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-2) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../103-libhts3t64_1.22.1+ds2-1_amd64.deb ... Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../104-liblzma-dev_5.8.1-1.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.8.1-1.1) ... Selecting previously unselected package libhts-dev:amd64. Preparing to unpack .../105-libhts-dev_1.22.1+ds2-1_amd64.deb ... Unpacking libhts-dev:amd64 (1.22.1+ds2-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../106-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../107-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../108-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../109-libpod-coverage-perl_0.23-2_all.deb ... Unpacking libpod-coverage-perl (0.23-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../110-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libtest-fatal-perl. Preparing to unpack .../111-libtest-fatal-perl_0.017-2_all.deb ... Unpacking libtest-fatal-perl (0.017-2) ... Setting up libhtscodecs2:amd64 (1.6.1-2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libfile-slurp-perl (9999.32-2.1) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libtest-fatal-perl (0.017-2) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libunbound8:amd64 (1.23.1-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libssl-dev:amd64 (3.5.2-1) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.11.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libnghttp3-dev:amd64 (1.11.0-1) ... Setting up liblzma-dev:amd64 (5.8.1-1.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libjson-perl (4.10000-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.15.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdeflate-dev:amd64 (1.23-2) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libtool (2.5.4-5) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libngtcp2-dev:amd64 (1.15.1-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up libdevel-cover-perl (1.51-1) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.15.1-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libcurl3t64-gnutls:amd64 (8.16.0-1) ... Setting up debhelper (13.26) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.15.1-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:amd64 (8.16.0-1) ... Setting up libhts-dev:amd64 (1.22.1+ds2-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/allelecount-4.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../allelecount_4.3.0-3_source.changes dpkg-buildpackage: info: source package allelecount dpkg-buildpackage: info: source version 4.3.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_clean --sourcedirectory=c cd c && make -j42 clean make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_clean --sourcedirectory=perl make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_configure --sourcedirectory=c dh_auto_configure --sourcedirectory=perl cd perl && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for alleleCount Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_build --sourcedirectory=c --no-parallel cd c && make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno mkdir -p ./bin mkdir -p ./htslib_tmp #Do some magic to ensure we compile ALLELECOUNT with the static libhts.a rather than libhts.so ln -fs /libhts.a ./htslib_tmp/libhts.a gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic -c src/bam_access.c -o src/bam_access.o gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -I/usr/local//include -Isrc/ -I/ -rdynamic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -o ./bin/alleleCounter ./src/bam_access.o -L./htslib_tmp -L/usr/local//lib -lhts -lpthread -lz -lbz2 -llzma -lm -ldl ./src/alleleCounter.c -Wl,-z,relro -Wl,-z,now gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/allelecount-4.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic ./src/bam_access.o -L./htslib_tmp -lhts -lpthread -lz -lbz2 -llzma -lm -ldl -L/usr/local//lib -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now tests/bam_access_tests.c -o tests/bam_access_tests tests/bam_access_tests.c: In function ‘test_bam_access_get_position_base_counts’: tests/bam_access_tests.c:45:13: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 45 | int res = bam_access_get_position_base_counts(chr,pos,stats,0,NULL); | ^~~ sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS remove tmp hts location rm -rf ./htslib_tmp Binaries have been compiled. make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_build --sourcedirectory=perl cd perl && make -j42 make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' cp lib/Sanger/CGP/AlleleCount/Genotype.pm blib/lib/Sanger/CGP/AlleleCount/Genotype.pm cp lib/Sanger/CGP/AlleleCount/ToJson.pm blib/lib/Sanger/CGP/AlleleCount/ToJson.pm cp lib/Sanger/CGP/AlleleCount.pm blib/lib/Sanger/CGP/AlleleCount.pm cp bin/alleleCounter.pl blib/script/alleleCounter.pl cp bin/alleleCounterToJson.pl blib/script/alleleCounterToJson.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounterToJson.pl Manifying 2 pod documents Manifying 2 pod documents make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_test --sourcedirectory=c cd c && make -j42 test make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_test --sourcedirectory=perl cd perl && make -j42 test TEST_VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/1_pm_compile.t .. ok 1 - use Sanger::CGP::AlleleCount; ok 2 - use Sanger::CGP::AlleleCount::ToJson; ok 3 - use Sanger::CGP::AlleleCount::Genotype; ok 4 - Check version inheritance exists (Sanger::CGP::AlleleCount) ok 5 - Check version inheritance exists (Sanger::CGP::AlleleCount::ToJson) ok 6 - An object of class 'Sanger::CGP::AlleleCount::ToJson' isa 'Sanger::CGP::AlleleCount::ToJson' ok 7 - Check version inheritance exists (Sanger::CGP::AlleleCount::Genotype) ok 8 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' 1..8 ok t/2_pl_compile.t .. ok 1 - Compilation check: /build/reproducible-path/allelecount-4.3.0/perl/t/../bin/alleleCounterToJson.pl ok 2 - Compilation check: /build/reproducible-path/allelecount-4.3.0/perl/t/../bin/alleleCounter.pl 1..2 ok t/genotype.t ...... ok 1 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 2 - An object of class 'Sanger::CGP::AlleleCount::Genotype' isa 'Sanger::CGP::AlleleCount::Genotype' ok 3 - Check execution of loci profile (BAM) ok 4 - Expected result for defaults (BAM) ok 5 - Check execution of loci profile (BAM, pbq=20) ok 6 - Expected result for defaults (BAM, pbq=20) ok 7 - Check execution of loci profile (BAM, mapq=1) ok 8 - Expected result for defaults (BAM, mapq=1) ok 9 - Check execution of snp6 loci profile (BAM) ok 10 - Expected result for defaults (BAM) ok 11 - Check execution of snp6 loci profile (BAM, pbq=20) ok 12 - Expected result for defaults (BAM, pbq=20) ok 13 - Check execution of snp6 loci profile (BAM, mapq=1) ok 14 - Expected result for defaults (BAM, mapq>0) ok 15 - Check execution of loci profile (CRAM) ok 16 - Expected result for defaults (CRAM) ok 17 - Check execution of loci profile (CRAM, pbq=20) ok 18 - Expected result for defaults (CRAM, pbq=20) ok 19 - Check execution of loci profile (CRAM, mapq=1) ok 20 - Expected result for defaults (CRAM, mapq=1) ok 21 - Check execution of snp6 loci profile (CRAM) ok 22 - Expected result for defaults (CRAM) ok 23 - Check execution of snp6 loci profile (CRAM, pbq=20) ok 24 - Expected result for defaults (CRAM, pbq=20) ok 25 - Check execution of snp6 loci profile (CRAM, mapq=1) ok 26 - Expected result for defaults (CRAM, mapq=1) 1..26 ok t/tojson.t ........ ok 1 - An object of class 'Sanger::CGP::AlleleCount::ToJson' isa 'Sanger::CGP::AlleleCount::ToJson' ok 2 - Check conversion to JSON 1..2 ok All tests successful. Files=4, Tests=38, 3 wallclock secs ( 0.02 usr 0.02 sys + 0.65 cusr 0.11 csys = 0.80 CPU) Result: PASS make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_install --sourcedirectory=c dh_auto_install --sourcedirectory=perl cd perl && make -j42 install DESTDIR=/build/reproducible-path/allelecount-4.3.0/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' Manifying 2 pod documents Manifying 2 pod documents Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/ToJson.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/Genotype.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounter.pl.1p Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounterToJson.pl.1p Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::ToJson.3pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/bin/alleleCounterToJson.pl Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/bin/alleleCounter.pl make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'allelecount' in '../allelecount_4.3.0-3_amd64.deb'. dpkg-deb: building package 'allelecount-dbgsym' in '../allelecount-dbgsym_4.3.0-3_amd64.deb'. dpkg-deb: building package 'liballelecount-perl' in '../liballelecount-perl_4.3.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../allelecount_4.3.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../allelecount_4.3.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1847914 and its subdirectories I: Current time: Thu Oct 22 08:55:48 +14 2026 I: pbuilder-time-stamp: 1792608948 + false + set +x Wed Oct 21 18:55:48 UTC 2026 I: Signing ./b2/allelecount_4.3.0-3_amd64.buildinfo as allelecount_4.3.0-3_amd64.buildinfo.asc Wed Oct 21 18:55:48 UTC 2026 I: Signed ./b2/allelecount_4.3.0-3_amd64.buildinfo as ./b2/allelecount_4.3.0-3_amd64.buildinfo.asc Wed Oct 21 18:55:48 UTC 2026 - build #2 for allelecount/forky/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Wed Oct 21 18:55:48 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-6gf22jWo, removing. /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9: total 76 -rw-rw-r-- 1 jenkins jenkins 2409 Dec 10 2024 allelecount_4.3.0-3.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 12:31 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 12:32 b2 -rw------- 1 jenkins jenkins 61112 Sep 18 12:31 rbuildlog.JmSVCTE /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b1: total 200 -rw-r--r-- 1 jenkins jenkins 31072 Sep 18 12:31 allelecount-dbgsym_4.3.0-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 16284 Sep 18 12:31 allelecount_4.3.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2409 Sep 18 12:31 allelecount_4.3.0-3.dsc -rw-r--r-- 1 jenkins jenkins 7860 Sep 18 12:31 allelecount_4.3.0-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8742 Sep 18 12:31 allelecount_4.3.0-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1905 Sep 18 12:31 allelecount_4.3.0-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 30212 Sep 18 12:31 allelecount_4.3.0-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1410 Sep 18 12:31 allelecount_4.3.0-3_source.changes -rw-r--r-- 1 jenkins jenkins 57292 Sep 18 12:31 build.log -rw-r--r-- 1 jenkins jenkins 24944 Sep 18 12:31 liballelecount-perl_4.3.0-3_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b2: total 200 -rw-r--r-- 1 jenkins jenkins 31072 Sep 18 12:32 allelecount-dbgsym_4.3.0-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 16284 Sep 18 12:32 allelecount_4.3.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2409 Sep 18 12:32 allelecount_4.3.0-3.dsc -rw-rw-r-- 1 jenkins jenkins 7860 Sep 18 12:32 allelecount_4.3.0-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8742 Sep 18 12:32 allelecount_4.3.0-3_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1905 Sep 18 12:32 allelecount_4.3.0-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 30212 Sep 18 12:32 allelecount_4.3.0-3_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1410 Sep 18 12:32 allelecount_4.3.0-3_source.changes -rw-rw-r-- 1 jenkins jenkins 59226 Sep 18 12:32 build.log -rw-r--r-- 1 jenkins jenkins 24944 Sep 18 12:32 liballelecount-perl_4.3.0-3_all.deb Thu Sep 18 12:32:48 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu Sep 18 12:32:48 UTC 2025 I: allelecount_4.3.0-3_amd64.changes: Format: 1.8 Date: Tue, 10 Dec 2024 17:19:18 +0100 Source: allelecount Binary: allelecount allelecount-dbgsym liballelecount-perl Architecture: amd64 all Version: 4.3.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: allelecount - NGS copy number algorithms liballelecount-perl - Perl interface to NGS copy number algorithms Changes: allelecount (4.3.0-3) unstable; urgency=medium . * Build with make 4.4.1 (no-parallel) * Standards-Version: 4.7.0 (routine-update) * Update lintian override info format in d/liballelecount-perl.lintian-overrides on line 2. * Fix d/copyright (thanks to lrc) Checksums-Sha1: 0e9bfd048e33842b5ef453170ab6f1d61a0a29f7 31072 allelecount-dbgsym_4.3.0-3_amd64.deb a54c87c817fdfd54748fe27b5530b798c9f2d268 7860 allelecount_4.3.0-3_amd64.buildinfo 7e00ad7e543f49dbbde3565c4fa29c4e88e0c292 30212 allelecount_4.3.0-3_amd64.deb 99d307af701801cb98ad99bd0a224aae93fa047a 24944 liballelecount-perl_4.3.0-3_all.deb Checksums-Sha256: 8741f95487c1b920b766bf3aefa67faef5ec797e5ac8b0e89d54475c64b7175d 31072 allelecount-dbgsym_4.3.0-3_amd64.deb 4c337fff478f17a9d147da69e9aed13dead3e3c13e9fde722b88d6212cea3a66 7860 allelecount_4.3.0-3_amd64.buildinfo e49ada1ef9f62185d4576a034e4608bbe95cb5a8ba00296bb5c896291f3f4ed5 30212 allelecount_4.3.0-3_amd64.deb 042e25e0a5107134a3c6b5bb32b4b6174d2ee30bb268d6a83e0cf30d88a09bb7 24944 liballelecount-perl_4.3.0-3_all.deb Files: a2fc91ad455c737d38c15fbd602c84a7 31072 debug optional allelecount-dbgsym_4.3.0-3_amd64.deb 611b351fd05c3fd672dcae8c79788f3a 7860 science optional allelecount_4.3.0-3_amd64.buildinfo 876124307aaa6afb82309dfc3db02d32 30212 science optional allelecount_4.3.0-3_amd64.deb 0d3f54e03ac7c7b530093a66a0838114 24944 perl optional liballelecount-perl_4.3.0-3_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/allelecount_4.3.0-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/allelecount_4.3.0-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/allelecount_4.3.0-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/allelecount_4.3.0-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/allelecount_4.3.0-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/allelecount_4.3.0-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-18 12:31:19.446030152 +0000 +++ b2/build.log 2025-09-18 12:32:48.582137061 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Sep 18 00:26:00 -12 2025 -I: pbuilder-time-stamp: 1758198360 +I: Current time: Thu Oct 22 08:54:20 +14 2026 +I: pbuilder-time-stamp: 1792608860 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/50611/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 21 18:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f03b9b12f2be4f21b042ae8fee2a88b0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='50611' - PS1='# ' - PS2='> ' + INVOCATION_ID=2ce644fcc4504abd8468b00c5c6f3ac4 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1847914 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/pbuilderrc_Lo8C --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b1 --logfile b1/build.log allelecount_4.3.0-3.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/pbuilderrc_Yxbq --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b2 --logfile b2/build.log allelecount_4.3.0-3.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/50611/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -240,7 +272,7 @@ Get: 110 http://deb.debian.org/debian forky/main amd64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libtest-fatal-perl all 0.017-2 [12.9 kB] -Fetched 32.1 MB in 18s (1788 kB/s) +Fetched 32.1 MB in 11s (3050 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -705,7 +737,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/allelecount-4.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../allelecount_4.3.0-3_source.changes +I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/allelecount-4.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../allelecount_4.3.0-3_source.changes dpkg-buildpackage: info: source package allelecount dpkg-buildpackage: info: source version 4.3.0-3 dpkg-buildpackage: info: source distribution unstable @@ -717,7 +753,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_clean --sourcedirectory=c - cd c && make -j40 clean + cd c && make -j42 clean make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' @@ -770,11 +806,11 @@ Binaries have been compiled. make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_build --sourcedirectory=perl - cd perl && make -j40 + cd perl && make -j42 make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' cp lib/Sanger/CGP/AlleleCount/Genotype.pm blib/lib/Sanger/CGP/AlleleCount/Genotype.pm -cp lib/Sanger/CGP/AlleleCount.pm blib/lib/Sanger/CGP/AlleleCount.pm cp lib/Sanger/CGP/AlleleCount/ToJson.pm blib/lib/Sanger/CGP/AlleleCount/ToJson.pm +cp lib/Sanger/CGP/AlleleCount.pm blib/lib/Sanger/CGP/AlleleCount.pm cp bin/alleleCounter.pl blib/script/alleleCounter.pl cp bin/alleleCounterToJson.pl blib/script/alleleCounterToJson.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounter.pl @@ -786,7 +822,7 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_test --sourcedirectory=c - cd c && make -j40 test + cd c && make -j42 test make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/c' sh ./tests/runtests.sh Running unit tests: @@ -799,7 +835,7 @@ make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/c' dh_auto_test --sourcedirectory=perl - cd perl && make -j40 test TEST_VERBOSE=1 + cd perl && make -j42 test TEST_VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/1_pm_compile.t .. @@ -853,7 +889,7 @@ 1..2 ok All tests successful. -Files=4, Tests=38, 1 wallclock secs ( 0.03 usr 0.01 sys + 0.61 cusr 0.14 csys = 0.79 CPU) +Files=4, Tests=38, 3 wallclock secs ( 0.02 usr 0.02 sys + 0.65 cusr 0.11 csys = 0.80 CPU) Result: PASS make[2]: Leaving directory '/build/reproducible-path/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/reproducible-path/allelecount-4.3.0' @@ -863,15 +899,15 @@ make[1]: Entering directory '/build/reproducible-path/allelecount-4.3.0' dh_auto_install --sourcedirectory=c dh_auto_install --sourcedirectory=perl - cd perl && make -j40 install DESTDIR=/build/reproducible-path/allelecount-4.3.0/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr + cd perl && make -j42 install DESTDIR=/build/reproducible-path/allelecount-4.3.0/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/reproducible-path/allelecount-4.3.0/perl' Manifying 2 pod documents Manifying 2 pod documents Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/ToJson.pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/Genotype.pm -Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounterToJson.pl.1p Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounter.pl.1p +Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounterToJson.pl.1p Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::ToJson.3pm Installing /build/reproducible-path/allelecount-4.3.0/debian/tmp/usr/bin/alleleCounterToJson.pl @@ -897,8 +933,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'allelecount-dbgsym' in '../allelecount-dbgsym_4.3.0-3_amd64.deb'. dpkg-deb: building package 'allelecount' in '../allelecount_4.3.0-3_amd64.deb'. +dpkg-deb: building package 'allelecount-dbgsym' in '../allelecount-dbgsym_4.3.0-3_amd64.deb'. dpkg-deb: building package 'liballelecount-perl' in '../liballelecount-perl_4.3.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../allelecount_4.3.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../allelecount_4.3.0-3_amd64.changes @@ -907,12 +943,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1847914/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/50611 and its subdirectories -I: Current time: Thu Sep 18 00:31:19 -12 2025 -I: pbuilder-time-stamp: 1758198679 +I: removing directory /srv/workspace/pbuilder/1847914 and its subdirectories +I: Current time: Thu Oct 22 08:55:48 +14 2026 +I: pbuilder-time-stamp: 1792608948 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/allelecount_4.3.0-3.diff: 71.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/allelecount_4.3.0-3.diff.gz b2/build.log: 80.5% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.0% -- replaced with stdout Thu Sep 18 12:32:49 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_allelecount_forky_amd64_1758198769 + touch /var/log/reproducible-builds/diffoscope_stamp_allelecount_forky_amd64_1758198769 + RESULT=0 + systemd-run '--description=diffoscope on allelecount/4.3.0-3 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_31-57904 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9 --run-session -c jenkins-reproducible-forky-diffoscope-62394f50-09ec-4fc6-abb3-b2940c400717 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/dbd-tmp-fldOcum ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/allelecount_4.3.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/allelecount_4.3.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/allelecount_4.3.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b1/allelecount_4.3.0-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b2/allelecount_4.3.0-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_31-57904.service; invocation ID: e3c6ed6d77eb41e4af8641bfe183eaac # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/allelecount_4.3.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/allelecount_4.3.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/allelecount_4.3.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b1/allelecount_4.3.0-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.8Lqa2oK9/b2/allelecount_4.3.0-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 204ms CPU time consumed: 178ms Memory peak: 17.9M (swap: 0B) _ _ _ _ __ _| | | ___| | ___ ___ ___ _ _ _ __ | |_ / _` | | |/ _ \ |/ _ \/ __/ _ \| | | | '_ \| __| | (_| | | | __/ | __/ (_| (_) | |_| | | | | |_ \__,_|_|_|\___|_|\___|\___\___/ \__,_|_| |_|\__| Thu Sep 18 12:32:49 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 18 12:32:49 UTC 2025 I: allelecount from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-18 12:32:50] INFO: Starting at 2025-09-18 12:32:50.428165 [2025-09-18 12:32:50] INFO: Generating the pages of 1 package(s) [2025-09-18 12:32:50] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/allelecount didn't produce a buildlog, even though it has been built. [2025-09-18 12:32:50] INFO: Finished at 2025-09-18 12:32:50.663405, took: 0:00:00.235244 Thu Sep 18 12:32:50 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/allelecount.html Thu Sep 18 12:32:50 UTC 2025 I: Removing signed allelecount_4.3.0-3_amd64.buildinfo.asc files: removed './b1/allelecount_4.3.0-3_amd64.buildinfo.asc' removed './b2/allelecount_4.3.0-3_amd64.buildinfo.asc' 1758198770 amd64 forky allelecount Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/allelecount_4.3.0-3.rbuild.log: 78.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/allelecount_4.3.0-3.rbuild.log.gz [2025-09-18 12:32:50] INFO: Starting at 2025-09-18 12:32:50.984102 [2025-09-18 12:32:51] INFO: Generating the pages of 1 package(s) [2025-09-18 12:32:51] INFO: Finished at 2025-09-18 12:32:51.212489, took: 0:00:00.228389 All cleanup done. Thu Sep 18 12:32:51 UTC 2025 - total duration: 0h 7m 0s. Thu Sep 18 12:32:51 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-DTAZ6onz, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 7min 2.129s CPU time consumed: 3.071s Memory peak: 36.9M (swap: 0B)