Running as unit: rb-build-amd64_31-58002.service; invocation ID: 9d247e37ae354ec5b2ff870cbb5b7cfe ==================================================================================== Fri Sep 19 07:30:05 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_31) on jenkins, called using "ionos11-amd64 ionos5-amd64" as arguments. Fri Sep 19 07:30:05 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-CjNRaHie" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 19 07:30:05 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Sep 19 07:30:05 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-85DN0Q' Fri Sep 19 07:30:05 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Sep 19 07:30:05 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-7dN4yW' ok, let's check if disulfinder is building anywhere yet… ok, disulfinder is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of disulfinder in forky on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Fri Sep 19 07:30:21 UTC 2025 I: starting to build disulfinder/forky/amd64 on jenkins on '2025-09-19 07:30' Fri Sep 19 07:30:21 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_31/58002/console.log 1758267021 amd64 forky disulfinder Fri Sep 19 07:30:21 UTC 2025 I: Downloading source for forky/disulfinder=1.2.11-12 --2025-09-19 07:30:21-- http://deb.debian.org/debian/pool/main/d/disulfinder/disulfinder_1.2.11-12.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2201 (2.1K) [text/prs.lines.tag] Saving to: ‘disulfinder_1.2.11-12.dsc’ 0K .. 100% 115M=0s 2025-09-19 07:30:21 (115 MB/s) - ‘disulfinder_1.2.11-12.dsc’ saved [2201/2201] --2025-09-19 07:30:21-- http://deb.debian.org/debian/pool/main/d/disulfinder/disulfinder_1.2.11-12.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2201 (2.1K) [text/prs.lines.tag] Saving to: ‘disulfinder_1.2.11-12.dsc’ 0K .. 100% 115M=0s 2025-09-19 07:30:21 (115 MB/s) - ‘disulfinder_1.2.11-12.dsc’ saved [2201/2201] Fri Sep 19 07:30:21 UTC 2025 I: disulfinder_1.2.11-12.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: disulfinder Binary: disulfinder, disulfinder-data Architecture: any all Version: 1.2.11-12 Maintainer: Debian Med Packaging Team Uploaders: Guy Yachdav , Laszlo Kajan , Andreas Tille Homepage: https://disulfind.dsi.unifi.it/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/disulfinder Vcs-Git: https://salsa.debian.org/med-team/disulfinder.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-dev, libboost-graph-dev, libf2c2-dev, debhelper Package-List: disulfinder deb science optional arch=any disulfinder-data deb science optional arch=all Checksums-Sha1: 275abbe8b4ac8e7f83d8a38c81c7f75c0ec7481e 2480613 disulfinder_1.2.11.orig.tar.gz 52738db0241d3d67646b28e2f265eadbcad5a33e 8332 disulfinder_1.2.11-12.debian.tar.xz Checksums-Sha256: d653aaac3ea26e9f6106a371de4f43d05b781a8b8b690c97820e4b27ea9d3495 2480613 disulfinder_1.2.11.orig.tar.gz 407927fbe004d1c16487e4f787cd23d79ce80cdef4e4d17315b967109d5d33ca 8332 disulfinder_1.2.11-12.debian.tar.xz Files: a4f0ed137b56fc0674a207351b659eba 2480613 disulfinder_1.2.11.orig.tar.gz 53a5bfd7ad95f806bdee5a7888491ba0 8332 disulfinder_1.2.11-12.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHpPFYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFsKg//d8XmEUEc8jwvfScAQTiNjpgBaHrtO6Jd Cl0bAsD/btgLF43f6tk/Tlxe6aCHWy+Qgyh+xKucTvX/5JjxYF8lHutZBgDHNqHF yDtFygJBtMfeZZe5DX/EozWefBSFn9Pwmd0gqLcQ8PU/mJKI9l6dDo7i7UqBNOou 6zmszsM7thzUdxwXT1h78drmvXO+8FqawpyLxHMZbQ6OYb3bEsU2PLE1D/B+pASY Q59rtJvG491VAA3/uB7lb4vGwpq1L0gNKkVC9l4XsjP9sWsZE1AZ7jBLZEaL/ICN OdbLjV5POK5XTcKpTvA2sV+eBnBVstON6SnU1D0yetF7EQ4uac7hNZmpOqygX0x2 nXkodDk/TEktlBlpZBDULBdNt2809gWY7rUFxrg1qhVOZdpq9omytH6i2azY03JC IJfClHaDzLFvaaN2hbTqstue4eAW8LwzY4AoZ6mcr/c4Yox5ecDwUK2Zd2TF8WYI KiilYQK8eVQ4OKuYXFuRQeRKgX0yBr35lseBRk+ErWXIviimYFWudlrd4w0QA3kI vHrCNzl42xPHoZjA4xIxqpP7rjDNIbpUJAQbz6a1oAJ1bCewQUe4JKWzHMYwKgzM exeUdHdSwWOZVQsj11jeftTUSwdQhoXPKtas9SbpoHHE+irQE/9giPoDOHncynwU xtsP1O2LT8s= =WaZA -----END PGP SIGNATURE----- Fri Sep 19 07:30:21 UTC 2025 I: Checking whether the package is not for us Fri Sep 19 07:30:21 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri Sep 19 07:30:21 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri Sep 19 07:30:21 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Sep 19 07:30:21 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-jNB3Th' ==================================================================================== Fri Sep 19 07:30:22 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 disulfinder forky /srv/reproducible-results/rbuild-debian/r-b-build.6Xff4Uk1 1.2.11-12" as arguments. Fri Sep 19 07:30:22 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-aKxZIk7u" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 19 07:30:22 UTC 2025 I: Downloading source for forky/disulfinder=1.2.11-12 Reading package lists... NOTICE: 'disulfinder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/disulfinder.git Please use: git clone https://salsa.debian.org/med-team/disulfinder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2491 kB of source archives. Get:1 http://deb.debian.org/debian forky/main disulfinder 1.2.11-12 (dsc) [2201 B] Get:2 http://deb.debian.org/debian forky/main disulfinder 1.2.11-12 (tar) [2481 kB] Get:3 http://deb.debian.org/debian forky/main disulfinder 1.2.11-12 (diff) [8332 B] Fetched 2491 kB in 0s (10.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'disulfinder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/disulfinder.git Please use: git clone https://salsa.debian.org/med-team/disulfinder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2491 kB of source archives. Get:1 http://deb.debian.org/debian forky/main disulfinder 1.2.11-12 (dsc) [2201 B] Get:2 http://deb.debian.org/debian forky/main disulfinder 1.2.11-12 (tar) [2481 kB] Get:3 http://deb.debian.org/debian forky/main disulfinder 1.2.11-12 (diff) [8332 B] Fetched 2491 kB in 0s (10.1 MB/s) Download complete and in download only mode ============================================================================= Building disulfinder in forky on amd64 on ionos11-amd64 now. Date: Fri Sep 19 07:30:22 UTC 2025 Date UTC: Fri Sep 19 07:30:22 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 18 19:30:22 -12 2025 I: pbuilder-time-stamp: 1758267022 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [disulfinder_1.2.11-12.dsc] I: copying [./disulfinder_1.2.11.orig.tar.gz] I: copying [./disulfinder_1.2.11-12.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./disulfinder_1.2.11-12.dsc: no acceptable signature found dpkg-source: info: extracting disulfinder in disulfinder-1.2.11 dpkg-source: info: unpacking disulfinder_1.2.11.orig.tar.gz dpkg-source: info: unpacking disulfinder_1.2.11-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying variable_length_array dpkg-source: info: applying unknown_escape dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/757001/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6dd7f6f7425242f5bdef26f0481a09a1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='757001' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6Xff4Uk1/pbuilderrc_pw0U --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6Xff4Uk1/b1 --logfile b1/build.log disulfinder_1.2.11-12.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/757001/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-dev, libboost-graph-dev, libf2c2-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-graph-dev; however: Package libboost-graph-dev is not installed. pbuilder-satisfydepends-dummy depends on libf2c2-dev; however: Package libf2c2-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-dev{a} libboost-graph-dev{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libdebhelper-perl{a} libelf1t64{a} libf2c2{a} libf2c2-dev{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libicu-dev{a} libicu76{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libstdc++-14-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 51.4 MB of archives. After unpacking 367 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.3.0-8 [2670 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.3.0-8 [2673 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 36 http://deb.debian.org/debian forky/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 37 http://deb.debian.org/debian forky/main amd64 libboost-graph1.83.0 amd64 1.83.0-5 [368 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libboost-regex1.83.0 amd64 1.83.0-5 [336 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 40 http://deb.debian.org/debian forky/main amd64 libboost-regex1.83-dev amd64 1.83.0-5 [352 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libboost-serialization1.83.0 amd64 1.83.0-5 [343 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libboost-serialization1.83-dev amd64 1.83.0-5 [383 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libboost-test1.83.0 amd64 1.83.0-5 [488 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libboost-test1.83-dev amd64 1.83.0-5 [560 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libboost-graph1.83-dev amd64 1.83.0-5 [392 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libboost-graph-dev amd64 1.83.0.2+b2 [3700 B] Get: 47 http://deb.debian.org/debian forky/main amd64 libf2c2 amd64 20240504-1+b2 [124 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libf2c2-dev amd64 20240504-1+b2 [130 kB] Fetched 51.4 MB in 11s (4815 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/disulfinder-1.2.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../disulfinder_1.2.11-12_source.changes dpkg-buildpackage: info: source package disulfinder dpkg-buildpackage: info: source version 1.2.11-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j40 distclean make[1]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' if [ -e "disulfind/src/Makefile" ]; then make -C disulfind/src clean; fi make[2]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' make -C NN clean make -C Common clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/NN' rm -f *~ *.o brnn-train brnn-test make -C SVM clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common' make -C eig clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/NN' make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libeig.a *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libCommon.a Eig Norm *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common' cd SVM && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' cd Input && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Input' rm *.o makeWindow makeSparseVector globalDescriptor createKernelDataset createBRNNDataset buildXfolds *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Input' cd Output && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Output' rm *.o makeASCIIOutput makeHTMLOutput *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Output' cd FSA-Alignment && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/FSA-Alignment' rm *.o fold_automata viterbi_aligner timed_transitions *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/FSA-Alignment' cd BRNN && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/BRNN' rm -f *.o core rm -f ./RNNs/*.o ./RNNs/core disulfind-conn make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/BRNN' rm disulfinder disultrainer *.o *~ -f make[2]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' rm -f *.[12345678] *.[12345678].gz #if [ -d "disulfind" ]; then rm -rf disulfind; fi if [ -d "disulfinder-1.2.11" ]; then rm -rf "disulfinder-1.2.11"; fi rm -rf patch-stamp \ initial-clean-stamp \ "disulfinder-1.2.11.tar.gz" \ .pc make[1]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/disulfinder.substvars debian/disulfinder-data.substvars debian/files rm -fr -- debian/disulfinder/ debian/tmp/ debian/disulfinder-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' dh_auto_build --no-parallel make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' make -C disulfind/src disulfinder make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/GlobalDescriptor.cpp -o Input/GlobalDescriptor.o In file included from Input/utils.h:2, from Input/GlobalDescriptor.cpp:3: Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: 'aa_codes' defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createBRNNDataset.cpp -o Input/createBRNNDataset.o In file included from Input/utils.h:2, from Input/createBRNNDataset.h:1, from Input/createBRNNDataset.cpp:2: Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: 'aa_codes' defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createKernelDataset.cpp -o Input/createKernelDataset.o In file included from Input/utils.h:2, from Input/createKernelDataset.h:1, from Input/createKernelDataset.cpp:2: Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeWindow.cpp -o Input/makeWindow.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeSparseVector.cpp -o Input/makeSparseVector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/buildXfolds.cpp -o Input/buildXfolds.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c SVM/SVMClassifier.cpp -o SVM/SVMClassifier.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeHTMLOutput.cpp -o Output/makeHTMLOutput.o Output/makeHTMLOutput.cpp: In function 'void makeHTMLOutput(std::string, const char*, int, std::string, std::ostream&)': Output/makeHTMLOutput.cpp:162:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~~ Output/makeHTMLOutput.cpp:162:33: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/utils.cpp -o Output/utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeASCIIOutput.cpp -o Output/makeASCIIOutput.o Output/makeASCIIOutput.cpp: In function 'void makeASCIIOutput(std::string, const char*, int, std::string, std::ostream&)': Output/makeASCIIOutput.cpp:144:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~~ Output/makeASCIIOutput.cpp:144:33: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/fsa.cpp -o FSA-Alignment/fsa.o In file included from FSA-Alignment/../Common/Matrix.h:13, from FSA-Alignment/../Common/CommonMethods.h:15, from FSA-Alignment/fsa.cpp:2: /usr/include/f2c.h:135:9: error: reference to 'complex' is ambiguous 135 | complex c; | ^~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/vector:64, from FSA-Alignment/fsa.h:3, from FSA-Alignment/fsa.cpp:1: /usr/include/c++/15/bits/stl_pair.h:105:11: note: candidates are: 'template class std::complex' 105 | class complex; | ^~~~~~~ /usr/include/f2c.h:17:31: note: 'typedef struct complex complex' 17 | typedef struct { real r, i; } complex; | ^~~~~~~ make[3]: *** [Makefile:48: FSA-Alignment/fsa.o] Error 1 make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' make[2]: *** [Makefile:24: disulfinder] Error 2 make[2]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" returned exit code 2 make[1]: *** [debian/rules:17: override_dh_auto_build] Error 25 make[1]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' make: *** [debian/rules:14: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/757001 and its subdirectories Starting cleanup. All cleanup done. Fri Sep 19 07:36:58 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-aKxZIk7u, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6Xff4Uk1: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 19 07:36 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 19 07:30 b2 -rw-rw-r-- 1 jenkins jenkins 2201 Jan 20 2022 disulfinder_1.2.11-12.dsc -rw------- 1 jenkins jenkins 3335 Sep 19 07:30 rbuildlog.N8IFoQr /srv/reproducible-results/rbuild-debian/r-b-build.6Xff4Uk1/b1: total 36 -rw-r--r-- 1 jenkins jenkins 36506 Sep 19 07:36 build.log /srv/reproducible-results/rbuild-debian/r-b-build.6Xff4Uk1/b2: total 0 Fri Sep 19 07:36:58 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 18 19:30:22 -12 2025 I: pbuilder-time-stamp: 1758267022 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [disulfinder_1.2.11-12.dsc] I: copying [./disulfinder_1.2.11.orig.tar.gz] I: copying [./disulfinder_1.2.11-12.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./disulfinder_1.2.11-12.dsc: no acceptable signature found dpkg-source: info: extracting disulfinder in disulfinder-1.2.11 dpkg-source: info: unpacking disulfinder_1.2.11.orig.tar.gz dpkg-source: info: unpacking disulfinder_1.2.11-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying variable_length_array dpkg-source: info: applying unknown_escape dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/757001/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6dd7f6f7425242f5bdef26f0481a09a1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='757001' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6Xff4Uk1/pbuilderrc_pw0U --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6Xff4Uk1/b1 --logfile b1/build.log disulfinder_1.2.11-12.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/757001/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-dev, libboost-graph-dev, libf2c2-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-graph-dev; however: Package libboost-graph-dev is not installed. pbuilder-satisfydepends-dummy depends on libf2c2-dev; however: Package libf2c2-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-dev{a} libboost-graph-dev{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libdebhelper-perl{a} libelf1t64{a} libf2c2{a} libf2c2-dev{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libicu-dev{a} libicu76{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libstdc++-14-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 51.4 MB of archives. After unpacking 367 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.3.0-8 [2670 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.3.0-8 [2673 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 36 http://deb.debian.org/debian forky/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 37 http://deb.debian.org/debian forky/main amd64 libboost-graph1.83.0 amd64 1.83.0-5 [368 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libboost-regex1.83.0 amd64 1.83.0-5 [336 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 40 http://deb.debian.org/debian forky/main amd64 libboost-regex1.83-dev amd64 1.83.0-5 [352 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libboost-serialization1.83.0 amd64 1.83.0-5 [343 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libboost-serialization1.83-dev amd64 1.83.0-5 [383 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libboost-test1.83.0 amd64 1.83.0-5 [488 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libboost-test1.83-dev amd64 1.83.0-5 [560 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libboost-graph1.83-dev amd64 1.83.0-5 [392 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libboost-graph-dev amd64 1.83.0.2+b2 [3700 B] Get: 47 http://deb.debian.org/debian forky/main amd64 libf2c2 amd64 20240504-1+b2 [124 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libf2c2-dev amd64 20240504-1+b2 [130 kB] Fetched 51.4 MB in 11s (4815 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/disulfinder-1.2.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../disulfinder_1.2.11-12_source.changes dpkg-buildpackage: info: source package disulfinder dpkg-buildpackage: info: source version 1.2.11-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j40 distclean make[1]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' if [ -e "disulfind/src/Makefile" ]; then make -C disulfind/src clean; fi make[2]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' make -C NN clean make -C Common clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/NN' rm -f *~ *.o brnn-train brnn-test make -C SVM clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common' make -C eig clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/NN' make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libeig.a *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libCommon.a Eig Norm *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common' cd SVM && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' cd Input && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Input' rm *.o makeWindow makeSparseVector globalDescriptor createKernelDataset createBRNNDataset buildXfolds *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Input' cd Output && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Output' rm *.o makeASCIIOutput makeHTMLOutput *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Output' cd FSA-Alignment && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/FSA-Alignment' rm *.o fold_automata viterbi_aligner timed_transitions *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/FSA-Alignment' cd BRNN && make clean make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/BRNN' rm -f *.o core rm -f ./RNNs/*.o ./RNNs/core disulfind-conn make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/BRNN' rm disulfinder disultrainer *.o *~ -f make[2]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' rm -f *.[12345678] *.[12345678].gz #if [ -d "disulfind" ]; then rm -rf disulfind; fi if [ -d "disulfinder-1.2.11" ]; then rm -rf "disulfinder-1.2.11"; fi rm -rf patch-stamp \ initial-clean-stamp \ "disulfinder-1.2.11.tar.gz" \ .pc make[1]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/disulfinder.substvars debian/disulfinder-data.substvars debian/files rm -fr -- debian/disulfinder/ debian/tmp/ debian/disulfinder-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' dh_auto_build --no-parallel make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' make -C disulfind/src disulfinder make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/GlobalDescriptor.cpp -o Input/GlobalDescriptor.o In file included from Input/utils.h:2, from Input/GlobalDescriptor.cpp:3: Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: 'aa_codes' defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createBRNNDataset.cpp -o Input/createBRNNDataset.o In file included from Input/utils.h:2, from Input/createBRNNDataset.h:1, from Input/createBRNNDataset.cpp:2: Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: 'aa_codes' defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createKernelDataset.cpp -o Input/createKernelDataset.o In file included from Input/utils.h:2, from Input/createKernelDataset.h:1, from Input/createKernelDataset.cpp:2: Input/Protein.h:19:20: warning: 'aa_three_codes' defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: 'tdb_aa_codes' defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeWindow.cpp -o Input/makeWindow.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeSparseVector.cpp -o Input/makeSparseVector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/buildXfolds.cpp -o Input/buildXfolds.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c SVM/SVMClassifier.cpp -o SVM/SVMClassifier.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeHTMLOutput.cpp -o Output/makeHTMLOutput.o Output/makeHTMLOutput.cpp: In function 'void makeHTMLOutput(std::string, const char*, int, std::string, std::ostream&)': Output/makeHTMLOutput.cpp:162:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~~ Output/makeHTMLOutput.cpp:162:33: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/utils.cpp -o Output/utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeASCIIOutput.cpp -o Output/makeASCIIOutput.o Output/makeASCIIOutput.cpp: In function 'void makeASCIIOutput(std::string, const char*, int, std::string, std::ostream&)': Output/makeASCIIOutput.cpp:144:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~~ Output/makeASCIIOutput.cpp:144:33: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/fsa.cpp -o FSA-Alignment/fsa.o In file included from FSA-Alignment/../Common/Matrix.h:13, from FSA-Alignment/../Common/CommonMethods.h:15, from FSA-Alignment/fsa.cpp:2: /usr/include/f2c.h:135:9: error: reference to 'complex' is ambiguous 135 | complex c; | ^~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/vector:64, from FSA-Alignment/fsa.h:3, from FSA-Alignment/fsa.cpp:1: /usr/include/c++/15/bits/stl_pair.h:105:11: note: candidates are: 'template class std::complex' 105 | class complex; | ^~~~~~~ /usr/include/f2c.h:17:31: note: 'typedef struct complex complex' 17 | typedef struct { real r, i; } complex; | ^~~~~~~ make[3]: *** [Makefile:48: FSA-Alignment/fsa.o] Error 1 make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' make[2]: *** [Makefile:24: disulfinder] Error 2 make[2]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" returned exit code 2 make[1]: *** [debian/rules:17: override_dh_auto_build] Error 25 make[1]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' make: *** [debian/rules:14: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/757001 and its subdirectories disulfinder failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/disulfinder_1.2.11-12.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/disulfinder_1.2.11-12.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/disulfinder_1.2.11-12.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/disulfinder_1.2.11-12.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/disulfinder_1.2.11-12_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/disulfinder_1.2.11-12.diff.gz' Fri Sep 19 07:36:59 UTC 2025 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 80.5% -- replaced with stdout Fri Sep 19 07:36:59 UTC 2025 I: https://tests.reproducible-builds.org/debian/forky/amd64/disulfinder : reproducible ➤ FTBFS INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-19 07:37:00] INFO: Starting at 2025-09-19 07:37:00.068433 [2025-09-19 07:37:00] INFO: Generating the pages of 1 package(s) [2025-09-19 07:37:00] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/disulfinder didn't produce a buildlog, even though it has been built. [2025-09-19 07:37:00] INFO: Finished at 2025-09-19 07:37:00.341588, took: 0:00:00.273158 Fri Sep 19 07:37:00 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/disulfinder.html [2025-09-19 07:37:00] INFO: Starting at 2025-09-19 07:37:00.637594 [2025-09-19 07:37:00] INFO: Scheduling packages in amd64/forky [2025-09-19 07:37:00] INFO: jenkins scheduled in forky/amd64, reason: 'reproducible ➤ FTBFS': disulfinder [2025-09-19 07:37:01] INFO: Finished at 2025-09-19 07:37:01.070096, took: 0:00:00.432506 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/disulfinder_1.2.11-12.rbuild.log: 77.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/disulfinder_1.2.11-12.rbuild.log.gz [2025-09-19 07:37:01] INFO: Starting at 2025-09-19 07:37:01.379086 [2025-09-19 07:37:01] INFO: Generating the pages of 1 package(s) [2025-09-19 07:37:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/disulfinder_1.2.11-12.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/disulfinder_1.2.11-12.diff.gz is missing [2025-09-19 07:37:01] INFO: Finished at 2025-09-19 07:37:01.649184, took: 0:00:00.270101 All cleanup done. Fri Sep 19 07:37:01 UTC 2025 - total duration: 0h 6m 54s. Fri Sep 19 07:37:01 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-CjNRaHie, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 6min 56.609s CPU time consumed: 3.034s Memory peak: 58.2M (swap: 0B)